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Pathways
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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:glycogen degradation pathway
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Accession:PW:0000534 term browser browse the term
Definition:Those metabolic reactions involved in the breakdown of glycogen to glucose-6-phosphate. Glucose-6-phosphate can then be dephosphorylated to glucose or it can be utilized via glycolysis for energy production; an alternative pathway of G6P utilization is the oxidative phase of the pentose phosphate shunt. A small percentage of glucose-6-phosphate can be converted to hexosamines.
Synonyms:related_synonym: Glycogen breakdown (glycogenolysis);   glycogen catabolic process;   glycogenolysis
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glycogen degradation pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGL amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase ISO RGD PMID:15180797 PMID:6449198 PMID:11766064 RGD:1642741, RGD:1642743, RGD:2304191 NCBI chr 1:99,849,258...99,924,023
Ensembl chr 1:99,850,361...99,924,023 		JBrowse link
G CALM1 calmodulin 1 TAS RGD PMID:10487978 RGD:2305981 NCBI chr14:90,396,502...90,408,268
Ensembl chr14:90,396,502...90,408,268 		JBrowse link
G CALM2 calmodulin 2 TAS RGD PMID:10487978 RGD:2305981 NCBI chr 2:47,160,082...47,176,936
Ensembl chr 2:47,160,084...47,176,921 		JBrowse link
G CALM3 calmodulin 3 TAS RGD PMID:10487978 RGD:2305981 NCBI chr19:46,601,074...46,610,782
Ensembl chr19:46,601,074...46,610,782 		JBrowse link
G G6PC1 glucose-6-phosphatase catalytic subunit 1 ISO RGD PMID:15138155 RGD:1582633 NCBI chr17:42,900,799...42,914,438
Ensembl chr17:42,900,797...42,914,438 		JBrowse link
G PGM1 phosphoglucomutase 1 TAS RGD PMID:9549096 RGD:2304188 NCBI chr 1:63,593,411...63,660,245
Ensembl chr 1:63,593,411...63,660,245 		JBrowse link
G PGM2 phosphoglucomutase 2 TAS RGD PMID:9549096 RGD:2304188 NCBI chr 4:37,826,686...37,862,937
Ensembl chr 4:37,826,660...37,862,937 		JBrowse link
G PGM3 phosphoglucomutase 3 TAS RGD PMID:9549096 RGD:2304188 NCBI chr 6:83,148,705...83,193,900
Ensembl chr 6:83,147,324...83,193,936 		JBrowse link
G PHKA1 phosphorylase kinase regulatory subunit alpha 1 TAS RGD PMID:10487978 RGD:2305981 NCBI chr  X:72,578,814...72,714,306
Ensembl chr  X:72,578,814...72,714,319 		JBrowse link
G PHKA2 phosphorylase kinase regulatory subunit alpha 2 TAS RGD PMID:10487978 RGD:2305981 NCBI chr  X:18,892,298...18,984,114
Ensembl chr  X:18,892,298...18,984,114 		JBrowse link
G PHKB phosphorylase kinase regulatory subunit beta TAS RGD PMID:10487978 RGD:2305981 NCBI chr16:47,461,299...47,701,523
Ensembl chr16:47,461,123...47,701,523 		JBrowse link
G PHKG1 phosphorylase kinase catalytic subunit gamma 1 TAS RGD PMID:10487978 RGD:2305981 NCBI chr 7:56,080,295...56,092,952
Ensembl chr 7:56,080,283...56,092,996 		JBrowse link
G PHKG2 phosphorylase kinase catalytic subunit gamma 2 TAS RGD PMID:10487978 RGD:2305981 NCBI chr16:30,748,425...30,761,176
Ensembl chr16:30,748,293...30,761,176 		JBrowse link
G PPP1CA protein phosphatase 1 catalytic subunit alpha TAS
ISO		 RGD PMID:14715909 PMID:7720853 RGD:2304325, RGD:2304267 NCBI chr11:67,398,183...67,401,858
Ensembl chr11:67,398,181...67,421,183 		JBrowse link
G PPP1CB protein phosphatase 1 catalytic subunit beta TAS
ISO		 RGD PMID:14715909 PMID:7720853 RGD:2304325, RGD:2304267 NCBI chr 2:28,751,604...28,802,940
Ensembl chr 2:28,751,640...28,802,940 		JBrowse link
G PPP1CC protein phosphatase 1 catalytic subunit gamma TAS RGD PMID:14715909 RGD:2304325 NCBI chr12:110,708,376...110,742,891
Ensembl chr12:110,719,680...110,742,939 		JBrowse link
G PPP1R3A protein phosphatase 1 regulatory subunit 3A TAS RGD PMID:14715909 RGD:2304325 NCBI chr 7:113,876,777...113,919,009
Ensembl chr 7:113,876,777...114,075,920 		JBrowse link
G PPP1R3B protein phosphatase 1 regulatory subunit 3B TAS
ISO		 RGD PMID:14715909 PMID:11716774 PMID:7720853 RGD:2304325, RGD:2306167, RGD:2304267 NCBI chr 8:9,136,255...9,151,539
Ensembl chr 8:9,136,255...9,151,574 		JBrowse link
G PPP1R3C protein phosphatase 1 regulatory subunit 3C ISO RGD PMID:11716774 RGD:2306167 NCBI chr10:91,628,442...91,633,071
Ensembl chr10:91,628,442...91,633,071 		JBrowse link
G PPP1R3D protein phosphatase 1 regulatory subunit 3D ISO RGD PMID:11716774 RGD:2306167 NCBI chr20:59,936,663...59,940,305
Ensembl chr20:59,936,663...59,940,305 		JBrowse link
G PPP1R3E protein phosphatase 1 regulatory subunit 3E ISO RGD PMID:15752363 RGD:2306166 NCBI chr14:23,295,652...23,302,859
Ensembl chr14:23,295,652...23,302,859 		JBrowse link
G PYGB glycogen phosphorylase B TAS RGD PMID:11340058 PMID:1544539 RGD:1642822, RGD:2304109 NCBI chr20:25,248,085...25,298,012
Ensembl chr20:25,248,085...25,298,012 		JBrowse link
G PYGL glycogen phosphorylase L ISO
TAS		 RGD PMID:15138155 PMID:6449198 PMID:1544539 PMID:11340058 PMID:16125296 RGD:1582633, RGD:1642743, RGD:2304109, RGD:1642822, RGD:1601233 NCBI chr14:50,905,217...50,944,483
Ensembl chr14:50,857,891...50,944,483 		JBrowse link
G PYGM glycogen phosphorylase, muscle associated TAS
ISO		 RGD PMID:11340058 PMID:6449198 PMID:11692172 PMID:1544539 RGD:1642822, RGD:1642743, RGD:1599897, RGD:2304109 NCBI chr11:64,746,389...64,760,715
Ensembl chr11:64,746,389...64,759,974 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 5958
    classic metabolic pathway 1803
      carbohydrate metabolic pathway 540
        glycogen metabolic pathway 32
          glycogen degradation pathway 24
            altered glycogen degradation pathway 0
Path 2
Term Annotations click to browse term
  pathway 5958
    regulatory pathway 3604
      homeostasis pathway 1667
        glucose homeostasis pathway 347
          glucose biosynthesis pathway 96
            glycogen degradation pathway 24
              altered glycogen degradation pathway 0
paths to the root