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Pathways
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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (https://rgd.mcw.edu/rgdweb/contact/contactus.html).
Term:glycogen biosynthetic pathway
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Accession:PW:0000532 term browser browse the term
Definition:Those metabolic reactions leading to the biosynthesis of glycogen, a highly branched polysaccharide. Glycogen is the storage form of glucose in the cell; it represents an energy reserve that can be mobilized when and where there is a need for glucose.
Synonyms:related_synonym: Glycogen synthesis;   glycogen biosynthetic process;   glycogenesis
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glycogen biosynthetic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GBE1 1,4-alpha-glucan branching enzyme 1 ISO RGD PMID:6449198 RGD:1642743 NCBI chr 3:81,489,703...81,761,645
Ensembl chr 3:81,489,703...81,761,645 		JBrowse link
G GCK glucokinase ISO RGD PMID:15138155 RGD:1582633 NCBI chr 7:44,143,213...44,189,439
Ensembl chr 7:44,143,213...44,198,170 		JBrowse link
G GSK3A glycogen synthase kinase 3 alpha TAS RGD PMID:17530463 RGD:2306093 NCBI chr19:42,230,190...42,242,602
Ensembl chr19:42,226,225...42,242,625 		JBrowse link
G GSK3B glycogen synthase kinase 3 beta TAS RGD PMID:17530463 RGD:2306093 NCBI chr 3:119,821,321...120,094,447
Ensembl chr 3:119,821,321...120,094,994 		JBrowse link
G GYG1 glycogenin 1 ISO RGD PMID:8224611 PMID:10710493 RGD:2303736, RGD:2304070 NCBI chr 3:148,991,540...149,031,775
Ensembl chr 3:148,991,408...149,031,775 		JBrowse link
G GYS1 glycogen synthase 1 TAS
ISO 		RGD PMID:12297270 PMID:6449198 RGD:2304106, RGD:1642743 NCBI chr19:48,968,130...48,993,309
Ensembl chr19:48,968,130...48,993,310 		JBrowse link
G GYS2 glycogen synthase 2 ISO
TAS 		RGD PMID:15138155 PMID:6449198 PMID:12297270 RGD:1582633, RGD:1642743, RGD:2304106 NCBI chr12:21,532,577...21,604,847
Ensembl chr12:21,536,107...21,604,847 		JBrowse link
G PGM1 phosphoglucomutase 1 TAS RGD PMID:9549096 RGD:2304188 NCBI chr 1:63,593,411...63,660,245
Ensembl chr 1:63,593,411...63,660,245 		JBrowse link
G PGM2 phosphoglucomutase 2 TAS RGD PMID:9549096 RGD:2304188 NCBI chr 4:37,826,686...37,862,937
Ensembl chr 4:37,826,660...37,862,937 		JBrowse link
G PGM3 phosphoglucomutase 3 TAS RGD PMID:9549096 RGD:2304188 NCBI chr 6:83,148,705...83,193,900
Ensembl chr 6:83,147,324...83,193,936 		JBrowse link
G PPP1CA protein phosphatase 1 catalytic subunit alpha TAS
ISO 		RGD PMID:14715909 PMID:7720853 RGD:2304325, RGD:2304267 NCBI chr11:67,398,183...67,401,858
Ensembl chr11:67,398,181...67,421,183 		JBrowse link
G PPP1CB protein phosphatase 1 catalytic subunit beta TAS
ISO 		RGD PMID:14715909 PMID:7720853 RGD:2304325, RGD:2304267 NCBI chr 2:28,751,604...28,802,940
Ensembl chr 2:28,751,640...28,802,940 		JBrowse link
G PPP1CC protein phosphatase 1 catalytic subunit gamma TAS RGD PMID:14715909 RGD:2304325 NCBI chr12:110,708,376...110,742,891
Ensembl chr12:110,719,680...110,742,939 		JBrowse link
G PPP1R3A protein phosphatase 1 regulatory subunit 3A TAS RGD PMID:14715909 RGD:2304325 NCBI chr 7:113,876,777...113,919,009
Ensembl chr 7:113,876,777...114,075,920 		JBrowse link
G PPP1R3B protein phosphatase 1 regulatory subunit 3B TAS
ISO 		RGD PMID:14715909 PMID:11716774 PMID:7720853 RGD:2304325, RGD:2306167, RGD:2304267 NCBI chr 8:9,136,255...9,151,539
Ensembl chr 8:9,136,255...9,151,574 		JBrowse link
G PPP1R3C protein phosphatase 1 regulatory subunit 3C ISO RGD PMID:11716774 RGD:2306167 NCBI chr10:91,628,442...91,633,071
Ensembl chr10:91,628,442...91,633,071 		JBrowse link
G PPP1R3D protein phosphatase 1 regulatory subunit 3D ISO RGD PMID:11716774 RGD:2306167 NCBI chr20:59,936,663...59,940,305
Ensembl chr20:59,936,663...59,940,305 		JBrowse link
G PPP1R3E protein phosphatase 1 regulatory subunit 3E ISO RGD PMID:15752363 RGD:2306166 NCBI chr14:23,295,652...23,302,859
Ensembl chr14:23,295,652...23,302,859 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 5957
    classic metabolic pathway 1802
      carbohydrate metabolic pathway 540
        glycogen metabolic pathway 32
          glycogen biosynthetic pathway 18
            altered glycogen biosynthetic pathway 0
Path 2
Term Annotations click to browse term
  pathway 5957
    regulatory pathway 3600
      homeostasis pathway 1667
        glucose homeostasis pathway 347
          glucose utilization pathway 120
            glucose storage pathway 18
              glycogen biosynthetic pathway 18
                altered glycogen biosynthetic pathway 0
paths to the root