Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:spermidine metabolic pathway
go back to main search page
Accession:PW:0000396 term browser browse the term
Definition:Polyamine metabolism plays important roles in a number of cellular processes. Spermidine and spermine are formed in two consecutive reactions carried out by distinct enzymes that employ the decarboxylated form of AdoMet as an aminopropyl donor.
Synonyms:related_synonym: spermidine metabolic process


show annotations for term's descendants           Sort by:
spermidine metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G 2410018D16Rik RIKEN cDNA 2410018D16 gene ISO SMPDB SMP:00445 NCBI chr11:40,570,141...40,586,030
Ensembl chr11:40,570,141...40,586,030 		JBrowse link
G Amd1 S-adenosylmethionine decarboxylase 1 ISS
ISO		 SMPDB
RGD		 PMID:10430362 PMID:10712236 PMID:1415709 SMP:00445, RGD:1578320, RGD:7242911, RGD:7242912 NCBI chr10:40,163,454...40,178,184
Ensembl chr10:40,163,454...40,178,184 		JBrowse link
G Mat2a methionine adenosyltransferase 2A ISO SMPDB SMP:00445 NCBI chr 6:72,409,779...72,416,539
Ensembl chr 6:72,409,782...72,416,541 		JBrowse link
G Odc1 ornithine decarboxylase, structural 1 ISS
ISO		 SMPDB
RGD		 PMID:10430362 PMID:1415709 PMID:2292587 SMP:00445, RGD:1578320, RGD:7242912, RGD:7242932 NCBI chr12:17,594,906...17,601,503
Ensembl chr12:17,594,795...17,601,506 		JBrowse link
G Sat1 spermidine/spermine N1-acetyl transferase 1 ISO RGD PMID:2292587 RGD:7242932 NCBI chr  X:153,996,128...153,999,345
Ensembl chr  X:153,996,128...153,999,445 		JBrowse link
G Sms spermine synthase ISO SMPDB SMP:00445 NCBI chr  X:156,226,847...156,275,283
Ensembl chr  X:156,226,851...156,275,283 		JBrowse link
G Srm spermidine synthase ISO SMPDB
RGD		 PMID:23073625 PMID:16931179 PMID:2292587 SMP:00445, RGD:7242425, RGD:7242920, RGD:7242932 NCBI chr 4:148,675,970...148,679,076
Ensembl chr 4:148,675,960...148,679,450 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 6070
    classic metabolic pathway 1858
      biogenic amines and polyamines metabolic pathway 28
        polyamine metabolic pathway 13
          spermidine metabolic pathway 7
Path 2
Term Annotations click to browse term
  pathway 6070
    regulatory pathway 3685
      homeostasis pathway 1721
        organic chemical homeostasis pathway 454
          S-adenosylmethionine homeostasis pathway 286
            polyamine metabolic pathway 13
              spermidine metabolic pathway 7
paths to the root