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Pathways

PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:stress response pathway
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Accession:PW:0000237 term browser browse the term
Definition:The pathway(s) elicited as a physiological response to various types of insults, injuries, shocks and other situations the organism perceives as threatening.



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altered p53 signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ets1 ETS proto-oncogene 1, transcription factor ISO RGD PMID:22713868 RGD:8663430 NCBI chr 8:31,045,909...31,168,010
Ensembl chr 8:31,045,945...31,168,010
JBrowse link
G Mdm2 MDM2 proto-oncogene ISO RGD PMID:19165225 PMID:23262034 RGD:2316186, RGD:8663434 NCBI chr 7:53,290,660...53,315,205
Ensembl chr 7:53,290,664...53,314,915
JBrowse link
G Mdm4 MDM4 regulator of p53 ISO RGD PMID:23262034 RGD:8663434 NCBI chr13:44,432,596...44,516,165
Ensembl chr13:44,406,213...44,474,226
JBrowse link
G Mre11 MRE11 homolog, double strand break repair nuclease ISO RGD PMID:23263379 RGD:8663431 NCBI chr 8:11,618,876...11,680,451
Ensembl chr 8:11,632,354...11,678,279
JBrowse link
G Nfya nuclear transcription factor Y subunit alpha ISO RGD PMID:23263379 PMID:22713868 RGD:8663431, RGD:8663430 NCBI chr 9:12,587,437...12,613,911
Ensembl chr 9:12,586,259...12,613,898
JBrowse link
G Nfyb nuclear transcription factor Y subunit beta ISO RGD PMID:23263379 PMID:22713868 RGD:8663431, RGD:8663430 NCBI chr 7:20,964,988...20,980,569
Ensembl chr 7:20,964,993...20,980,565
JBrowse link
G Nfyc nuclear transcription factor Y subunit gamma ISO RGD PMID:23263379 PMID:22713868 RGD:8663431, RGD:8663430 NCBI chr 5:134,336,802...134,405,372
Ensembl chr 5:134,336,808...134,405,377
JBrowse link
G Pin1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 ISO RGD PMID:22713868 RGD:8663430 NCBI chr 8:19,189,408...19,200,785
Ensembl chr 8:19,189,373...19,200,785
JBrowse link
G Srebf2 sterol regulatory element binding transcription factor 2 ISO RGD PMID:23263379 PMID:22713868 RGD:8663431, RGD:8663430 NCBI chr 7:113,663,202...113,720,850
Ensembl chr 7:113,663,202...113,720,848
JBrowse link
G Tp53 tumor protein p53 ISO DNA:mutations:exon RGD PMID:19165225 PMID:19078924 PMID:20951313 PMID:18772397 PMID:23263379 More... RGD:2316186, RGD:4143515, RGD:5133242, RGD:5490966, RGD:8663431, RGD:8663430, RGD:8693397 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
JBrowse link
G Tp63 tumor protein p63 ISO RGD PMID:23263379 PMID:22713868 RGD:8663431, RGD:8663430 NCBI chr11:74,838,858...75,049,764
Ensembl chr11:74,838,859...75,049,398
JBrowse link
G Tp73 tumor protein p73 ISO RGD PMID:23263379 PMID:22713868 RGD:8663431, RGD:8663430 NCBI chr 5:164,621,377...164,703,958
Ensembl chr 5:164,621,377...164,681,128
JBrowse link
G Vdr vitamin D receptor ISO RGD PMID:22713868 RGD:8663430 NCBI chr 7:128,987,981...129,037,677
Ensembl chr 7:128,987,981...129,037,677
JBrowse link
endoplasmic reticulum stress - the unfolded protein response pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf4 activating transcription factor 4 ISO RGD PMID:22733998 RGD:10450872 NCBI chr 7:111,804,135...111,806,457
Ensembl chr 7:111,804,183...111,806,446
JBrowse link
G Atf6 activating transcription factor 6 ISO RGD PMID:22733998 RGD:10450872 NCBI chr13:82,927,579...83,106,381
Ensembl chr13:82,930,034...83,107,177
JBrowse link
G Creb3 cAMP responsive element binding protein 3 ISO RGD PMID:22733998 RGD:10450872 NCBI chr 5:57,817,865...57,823,233
Ensembl chr 5:57,817,832...57,824,390
JBrowse link
G Creb3l1 cAMP responsive element binding protein 3-like 1 ISO RGD PMID:22733998 RGD:10450872 NCBI chr 3:77,952,589...77,993,513
Ensembl chr 3:77,952,540...77,993,456
JBrowse link
G Creb3l2 cAMP responsive element binding protein 3-like 2 ISO RGD PMID:22733998 RGD:10450872 NCBI chr 4:65,907,570...66,112,078
Ensembl chr 4:65,907,655...66,023,763
JBrowse link
G Creb3l3 cAMP responsive element binding protein 3-like 3 ISO RGD PMID:22733998 RGD:10450872 NCBI chr 7:8,622,614...8,631,053
Ensembl chr 7:8,622,614...8,631,048
JBrowse link
G Creb3l4 cAMP responsive element binding protein 3-like 4 ISO RGD PMID:22733998 RGD:10450872 NCBI chr 2:175,690,340...175,695,846
Ensembl chr 2:175,690,335...175,695,932
JBrowse link
G Eif2a eukaryotic translation initiation factor 2A ISO RGD PMID:22733998 RGD:10450872 NCBI chr 2:142,761,303...142,794,767
Ensembl chr 2:142,761,416...142,795,068
JBrowse link
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 ISO RGD PMID:22733998 RGD:10450872 NCBI chr 4:102,805,495...102,866,914
Ensembl chr 4:102,805,510...102,866,911
JBrowse link
G Ern1 endoplasmic reticulum to nucleus signaling 1 ISO RGD PMID:22733998 RGD:10450872 NCBI chr10:91,326,889...91,421,201
Ensembl chr10:91,330,654...91,421,029
JBrowse link
G Xbp1 X-box binding protein 1 ISO RGD PMID:22733998 RGD:10450872 NCBI chr14:80,390,629...80,395,713
Ensembl chr14:80,390,643...80,395,693
JBrowse link
glutathione conjugation pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gsta1 glutathione S-transferase alpha 1 ISS
IDA
RGD PMID:10720752 PMID:17197701 RGD:1358120, RGD:1641938 NCBI chr 9:23,703,476...23,720,121
Ensembl chr 9:23,703,477...23,720,121
JBrowse link
G Gsta2 glutathione S-transferase alpha 2 ISS
IDA
RGD PMID:10720752 PMID:17197701 RGD:1358120, RGD:1641938 NCBI chr 8:79,184,535...79,196,827
Ensembl chr 8:79,184,322...79,196,798
JBrowse link
G Gsta4 glutathione S-transferase alpha 4 ISO
IDA
RGD PMID:10720752 PMID:11018474 RGD:1358120, RGD:1641942 NCBI chr 8:79,066,967...79,084,193
Ensembl chr 8:79,066,934...79,084,182
JBrowse link
G Gstk1 glutathione S-transferase kappa 1 ISS RGD PMID:10720752 RGD:1358120 NCBI chr 4:71,118,979...71,123,298
Ensembl chr 4:71,118,896...71,123,292
JBrowse link
G Gstm1 glutathione S-transferase mu 1 ISS RGD PMID:10720752 RGD:1358120 NCBI chr 2:195,649,845...195,655,402
Ensembl chr 2:195,649,845...195,655,411
JBrowse link
G Gstm2 glutathione S-transferase mu 2 IAGP RGD PMID:12624007 RGD:631154 NCBI chr 2:195,624,015...195,628,774
Ensembl chr 2:195,544,426...195,628,961
JBrowse link
G Gstm3 glutathione S-transferase mu 3 ISS RGD PMID:10720752 RGD:1358120 NCBI chr 2:195,590,450...195,612,578
Ensembl chr 2:195,607,289...195,612,475
JBrowse link
G Gstm5 glutathione S-transferase, mu 5 ISS RGD PMID:10720752 RGD:1358120 NCBI chr 2:195,531,599...195,534,562
Ensembl chr 2:195,531,495...195,534,553
JBrowse link
G Gstm6l glutathione S-transferase, mu 6-like ISS RGD PMID:14576844 RGD:1358122 NCBI chr 2:195,544,424...195,549,895
Ensembl chr 2:195,544,426...195,628,961
JBrowse link
G Gstm7 glutathione S-transferase, mu 7 TAS RGD PMID:10720752 RGD:1358120 NCBI chr 2:195,566,701...195,572,149
Ensembl chr 2:195,566,701...195,572,203
JBrowse link
G Gsto1 glutathione S-transferase omega 1 ISS RGD PMID:10720752 RGD:1358120 NCBI chr 1:246,721,089...246,731,228
Ensembl chr 1:246,721,221...246,731,468
JBrowse link
G Gsto2 glutathione S-transferase omega 2 ISO RGD PMID:10720752 RGD:1358120 NCBI chr 1:246,731,314...246,757,592
Ensembl chr 1:246,732,089...246,753,866
JBrowse link
G Gstp1 glutathione S-transferase pi 1 IDA RGD PMID:15110098 PMID:11018474 RGD:1357965, RGD:1641942 NCBI chr 1:201,337,762...201,340,230
Ensembl chr 1:201,321,672...201,340,226
JBrowse link
G Gstt1 glutathione S-transferase theta 1 ISS RGD PMID:10720752 RGD:1358120 NCBI chr20:12,856,613...12,873,586
Ensembl chr20:12,856,669...12,873,585
JBrowse link
G Gstt2 glutathione S-transferase theta 2 ISS RGD PMID:10720752 RGD:1358120 NCBI chr20:12,819,617...12,823,288
Ensembl chr20:12,819,170...12,823,288
JBrowse link
multidrug resistance protein mediated transport pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb4 ATP binding cassette subfamily B member 4 ISS RGD PMID:12433976 RGD:1358123 NCBI chr 4:25,150,998...25,209,489
Ensembl chr 4:25,151,953...25,209,202
JBrowse link
multidrug resistance-associated protein mediated transport pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcc1 ATP binding cassette subfamily C member 1 ISS RGD PMID:12433976 RGD:1358123 NCBI chr10:528,961...655,179
Ensembl chr10:531,812...655,114
JBrowse link
G Abcc10 ATP binding cassette subfamily C member 10 ISO RGD PMID:12433976 RGD:1358123 NCBI chr 9:14,657,242...14,677,178
Ensembl chr 9:14,657,264...14,677,178
JBrowse link
G Abcc12 ATP binding cassette subfamily C member 12 ISS RGD PMID:12801629 RGD:1302885 NCBI chr19:20,549,298...20,621,991
Ensembl chr19:20,549,405...20,620,734
JBrowse link
G Abcc2 ATP binding cassette subfamily C member 2 TAS RGD PMID:11557524 RGD:70559 NCBI chr 1:242,664,657...242,723,239
Ensembl chr 1:242,664,657...242,723,238
JBrowse link
G Abcc3 ATP binding cassette subfamily C member 3 ISS RGD PMID:12433976 RGD:1358123 NCBI chr10:79,296,681...79,342,749
Ensembl chr10:79,296,693...79,342,595
JBrowse link
G Abcc4 ATP binding cassette subfamily C member 4 ISS RGD PMID:12433976 RGD:1358123 NCBI chr15:95,541,186...95,774,898
Ensembl chr15:95,542,315...95,774,283
JBrowse link
G Abcc5 ATP binding cassette subfamily C member 5 IDA RGD PMID:10893247 RGD:632215 NCBI chr11:80,473,809...80,567,257
Ensembl chr11:80,473,872...80,567,253
JBrowse link
G Abcc6 ATP binding cassette subfamily C member 6 ISS RGD PMID:12433976 RGD:1358123 NCBI chr 1:96,447,224...96,501,464
Ensembl chr 1:96,447,251...96,501,464
JBrowse link
multispecific organic anion transporter mediated transport pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc22a6 solute carrier family 22 member 6 IDA RGD PMID:9228014 RGD:68822 NCBI chr 1:205,522,579...205,531,179
Ensembl chr 1:205,522,729...205,531,173
JBrowse link
G Slc22a7 solute carrier family 22 member 7 IDA RGD PMID:9650585 RGD:70525 NCBI chr 9:14,547,073...14,554,354
Ensembl chr 9:14,547,849...14,553,921
JBrowse link
G Slco1a1 solute carrier organic anion transporter family, member 1a1 IDA RGD PMID:12006354 RGD:625763 NCBI chr 4:174,877,045...174,950,900
Ensembl chr 4:174,876,593...174,950,873
JBrowse link
G Slco1a3 solute carrier organic anion transporter family member 1A3 IDA RGD PMID:8702823 RGD:729732 NCBI chr 4:174,975,119...175,018,640
Ensembl chr 4:174,975,122...175,014,586
JBrowse link
G Slco1a4 solute carrier organic anion transporter family, member 1a4 ISS RGD PMID:9294213 RGD:729806 NCBI chr 4:174,710,004...174,764,810
Ensembl chr 4:174,710,004...175,254,573
JBrowse link
G Slco1a5 solute carrier organic anion transporter family, member 1A5 TAS RGD PMID:11867608 RGD:70527 NCBI chr 4:175,172,390...175,254,598
Ensembl chr 4:174,710,004...175,254,573
JBrowse link
G Slco1a6 solute carrier organic anion transporter family, member 1a6 ISS RGD PMID:12433976 RGD:1358123 NCBI chr 4:175,072,143...175,107,950
Ensembl chr 4:175,072,143...175,117,263
JBrowse link
G Slco1b2 solute carrier organic anion transporter family member 1B2 IDA RGD PMID:10838093 RGD:68850 NCBI chr 4:174,551,463...174,619,988
Ensembl chr 4:174,551,480...174,619,981
JBrowse link
G Slco1c1 solute carrier organic anion transporter family, member 1c1 IDA RGD PMID:11981753 RGD:634158 NCBI chr 4:174,466,621...174,513,290
Ensembl chr 4:174,466,631...174,513,289
JBrowse link
G Slco4a1 solute carrier organic anion transporter family, member 4a1 TAS RGD PMID:11316767 RGD:727314 NCBI chr 3:167,559,177...167,578,307
Ensembl chr 3:167,559,316...167,578,305
JBrowse link
G Slco4c1 solute carrier organic anion transporter family, member 4C1 IDA RGD PMID:14993604 RGD:1303977 NCBI chr 9:97,177,497...97,229,161
Ensembl chr 9:97,178,861...97,229,715
JBrowse link
nuclear factor, erythroid 2 like 2 signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brca1 BRCA1, DNA repair associated ISO RGD PMID:24647116 RGD:11535066 NCBI chr10:86,417,441...86,477,762
Ensembl chr10:86,418,000...86,477,304
JBrowse link
G Btrc beta-transducin repeat containing E3 ubiquitin protein ligase ISO RGD PMID:24647116 PMID:25937177 RGD:11535066, RGD:11535070 NCBI chr 1:244,210,299...244,380,126
Ensembl chr 1:244,210,314...244,376,721
JBrowse link
G Cdkn1a cyclin-dependent kinase inhibitor 1A ISO RGD PMID:24647116 RGD:11535066 NCBI chr20:7,149,177...7,159,727
Ensembl chr20:7,149,217...7,159,585
JBrowse link
G Chd6 chromodomain helicase DNA binding protein 6 ISO RGD PMID:24647116 RGD:11535066 NCBI chr 3:149,596,509...149,757,765
Ensembl chr 3:149,596,509...149,757,755
JBrowse link
G Crebbp CREB binding protein ISO RGD PMID:24647116 RGD:11535066 NCBI chr10:11,335,551...11,461,888
Ensembl chr10:11,335,953...11,461,888
JBrowse link
G Cul1 cullin 1 ISO RGD PMID:24647116 RGD:11535066 NCBI chr 4:76,551,952...76,625,830
Ensembl chr 4:76,551,983...76,627,980
JBrowse link
G Cul3 cullin 3 ISO RGD PMID:24647116 RGD:11535066 NCBI chr 9:81,592,641...81,670,428
Ensembl chr 9:81,592,641...81,670,462
JBrowse link
G Dpp3 dipeptidylpeptidase 3 ISO RGD PMID:24647116 RGD:11535066 NCBI chr 1:202,204,683...202,228,501
Ensembl chr 1:202,204,693...202,228,541
JBrowse link
G Gadd45gip1 GADD45G interacting protein 1 ISO RGD PMID:24647116 RGD:11535066 NCBI chr19:23,320,662...23,323,211
Ensembl chr19:23,320,159...23,323,236
JBrowse link
G Gsk3a glycogen synthase kinase 3 alpha ISO RGD PMID:25937177 RGD:11535070 NCBI chr 1:80,815,843...80,825,732
Ensembl chr 1:80,815,850...80,825,802
JBrowse link
G Gsk3b glycogen synthase kinase 3 beta ISO RGD PMID:25937177 RGD:11535070 NCBI chr11:62,498,997...62,648,665
Ensembl chr11:62,504,316...62,648,646
JBrowse link
G Ikbkb inhibitor of nuclear factor kappa B kinase subunit beta ISO RGD PMID:24647116 RGD:11535066 NCBI chr16:69,319,487...69,373,251
Ensembl chr16:69,319,554...69,373,250
JBrowse link
G Keap1 Kelch-like ECH-associated protein 1 IMP
ISO
IDA
RGD PMID:11439354 PMID:24647116 PMID:26419687 PMID:20026152 RGD:727319, RGD:11535066, RGD:11530066, RGD:6902900 NCBI chr 8:19,768,375...19,777,862
Ensembl chr 8:19,768,375...19,777,862
JBrowse link
G Maff MAF bZIP transcription factor F ISO RGD PMID:24647116 RGD:11535066 NCBI chr 7:110,912,367...110,923,711
Ensembl chr 7:110,912,499...110,923,851
JBrowse link
G Mafg MAF bZIP transcription factor G ISO RGD PMID:24647116 RGD:11535066 NCBI chr10:105,903,307...105,911,808
Ensembl chr10:105,903,237...105,912,026
JBrowse link
G Mafk MAF bZIP transcription factor K ISO RGD PMID:24647116 RGD:11535066 NCBI chr12:14,834,628...14,856,414
Ensembl chr12:14,833,984...14,837,048
Ensembl chr12:14,833,984...14,837,048
JBrowse link
G Ncoa3 nuclear receptor coactivator 3 ISO RGD PMID:24647116 RGD:11535066 NCBI chr 3:154,738,566...154,821,395
Ensembl chr 3:154,738,581...154,818,594
JBrowse link
G Nfe2l2 NFE2 like bZIP transcription factor 2 ISO RGD PMID:26419687 PMID:25937177 PMID:24647116 RGD:11530066, RGD:11535070, RGD:11535066 NCBI chr 3:60,594,239...60,621,712
Ensembl chr 3:60,594,242...60,621,737
JBrowse link
G Nqo1 NAD(P)H quinone dehydrogenase 1 IEP RGD PMID:31889292 PMID:31432116 RGD:21201308, RGD:25823187 NCBI chr19:35,295,633...35,310,528
Ensembl chr19:35,295,573...35,310,557
JBrowse link
G Palb2 partner and localizer of BRCA2 ISO RGD PMID:24647116 RGD:11535066 NCBI chr 1:176,665,076...176,689,053
Ensembl chr 1:176,665,076...176,688,990
JBrowse link
G Pgam5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase ISO RGD PMID:24647116 RGD:11535066 NCBI chr12:46,409,324...46,416,410
Ensembl chr12:46,409,369...46,416,420
JBrowse link
G Pten phosphatase and tensin homolog ISO RGD PMID:25937177 RGD:11535070 NCBI chr 1:230,630,443...230,697,070
Ensembl chr 1:230,630,338...230,696,838
JBrowse link
G Rbx1 ring-box 1 ISO RGD PMID:24647116 RGD:11535066 NCBI chr 7:112,976,863...113,001,051
Ensembl chr 7:112,990,835...113,001,051
JBrowse link
G Rnf4 ring finger protein 4 ISO RGD PMID:24647116 RGD:11535066 NCBI chr14:76,401,292...76,423,270
Ensembl chr14:76,401,299...76,422,566
JBrowse link
G Siah2 siah E3 ubiquitin protein ligase 2 ISO RGD PMID:24647116 RGD:11535066 NCBI chr 2:142,913,924...142,931,752
Ensembl chr 2:142,914,003...142,931,950
JBrowse link
G Skp1 S-phase kinase-associated protein 1 ISO RGD PMID:24647116 RGD:11535066 NCBI chr10:36,401,987...36,417,066
Ensembl chr10:36,402,153...36,417,388
JBrowse link
G Sqstm1 sequestosome 1 ISO RGD PMID:24647116 RGD:11535066 NCBI chr10:34,525,517...34,536,670
Ensembl chr10:34,525,519...34,536,673
JBrowse link
oxidative stress response pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmox1 heme oxygenase 1 IDA blood protein analysis (MMO:0000166), western blot assay (MMO:0000669) RGD PMID:29091898 RGD:15090820 NCBI chr19:13,466,287...13,474,082
Ensembl chr19:13,467,244...13,474,079
JBrowse link
G Nfe2l2 NFE2 like bZIP transcription factor 2 IDA RGD PMID:29091898 RGD:15090820 NCBI chr 3:60,594,239...60,621,712
Ensembl chr 3:60,594,242...60,621,737
JBrowse link
G Nqo1 NAD(P)H quinone dehydrogenase 1 IDA blood protein analysis (MMO:0000166), western blot assay (MMO:0000669) RGD PMID:12603827 PMID:29091898 RGD:727509, RGD:15090820 NCBI chr19:35,295,633...35,310,528
Ensembl chr19:35,295,573...35,310,557
JBrowse link
p53 signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase ISO PID
RGD
PMID:20679336 PID:200206, RGD:8662965 NCBI chr 3:14,979,853...15,083,065
Ensembl chr 3:14,979,853...15,083,065
JBrowse link
G Adgrb1 adhesion G protein-coupled receptor B1 IEA KEGG rno:04115 NCBI chr 7:106,404,827...106,476,902
Ensembl chr 7:106,404,958...106,476,902
JBrowse link
G Akt1 AKT serine/threonine kinase 1 ISO PID PID:200206 NCBI chr 6:131,713,716...131,735,319
Ensembl chr 6:131,713,720...131,733,921
JBrowse link
G Apaf1 apoptotic peptidase activating factor 1 IEA KEGG rno:04115 NCBI chr 7:25,494,143...25,579,540
Ensembl chr 7:25,494,609...25,579,540
JBrowse link
G Atm ATM serine/threonine kinase ISO
IEA
KEGG
PID
RGD
PMID:19450511 PMID:16601750 PID:200206 rno:04115, RGD:2316155, RGD:2316156 NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437
JBrowse link
G Atr ATR serine/threonine kinase ISO PID PID:200206 NCBI chr 8:96,426,704...96,524,152
Ensembl chr 8:96,426,724...96,524,136
JBrowse link
G Bax BCL2 associated X, apoptosis regulator IEA KEGG rno:04115 NCBI chr 1:95,940,001...95,945,407
Ensembl chr 1:95,938,808...95,945,368
JBrowse link
G Bbc3 Bcl-2 binding component 3 IEA KEGG rno:04115 NCBI chr 1:77,013,281...77,022,509
Ensembl chr 1:77,014,543...77,022,509
JBrowse link
G Bid BH3 interacting domain death agonist IEA KEGG rno:04115 NCBI chr 4:154,113,198...154,136,353
Ensembl chr 4:154,113,198...154,134,720
JBrowse link
G Brca1 BRCA1, DNA repair associated ISO RGD PMID:20679336 RGD:8662965 NCBI chr10:86,417,441...86,477,762
Ensembl chr10:86,418,000...86,477,304
JBrowse link
G Casp3 caspase 3 IEA KEGG rno:04115 NCBI chr16:45,662,910...45,681,171
Ensembl chr16:45,662,910...45,684,648
JBrowse link
G Casp8 caspase 8 IEA KEGG rno:04115 NCBI chr 9:60,263,863...60,312,542
Ensembl chr 9:60,264,075...60,312,542
JBrowse link
G Casp9 caspase 9 IEA KEGG rno:04115 NCBI chr 5:154,108,872...154,126,628
Ensembl chr 5:154,109,046...154,126,626
JBrowse link
G Ccna2 cyclin A2 ISO PID PID:200206 NCBI chr 2:119,427,239...119,433,645
Ensembl chr 2:119,426,089...119,433,577
JBrowse link
G Ccnb1 cyclin B1 IEA KEGG rno:04115 NCBI chr 2:31,912,190...31,921,163
Ensembl chr 2:31,912,193...31,921,172
JBrowse link
G Ccnb2 cyclin B2 IEA KEGG rno:04115 NCBI chr 8:71,087,594...71,100,794
Ensembl chr 8:71,087,595...71,100,874
JBrowse link
G Ccnb3 cyclin B3 IEA KEGG rno:04115 NCBI chr  X:15,478,050...15,543,292
Ensembl chr  X:15,478,065...15,542,885
JBrowse link
G Ccnd1 cyclin D1 IEA KEGG rno:04115 NCBI chr 1:200,089,002...200,098,524
Ensembl chr 1:200,089,002...200,098,602
JBrowse link
G Ccnd2 cyclin D2 IEA KEGG rno:04115 NCBI chr 4:159,966,883...159,989,261
Ensembl chr 4:159,962,363...159,989,495
JBrowse link
G Ccnd3 cyclin D3 IEA KEGG rno:04115 NCBI chr 9:13,394,161...13,400,341
Ensembl chr 9:13,394,169...13,489,371
JBrowse link
G Ccne1 cyclin E1 IEA KEGG rno:04115 NCBI chr 1:90,781,947...90,791,188
Ensembl chr 1:90,781,949...90,791,101
JBrowse link
G Ccne2 cyclin E2 IEA KEGG rno:04115 NCBI chr 5:24,285,078...24,298,258
Ensembl chr 5:24,284,922...24,297,632
JBrowse link
G Ccng1 cyclin G1 ISO
IEA
PID
KEGG
PID:200206 rno:04115 NCBI chr10:25,176,231...25,182,604
Ensembl chr10:25,176,234...25,181,641
JBrowse link
G Ccng2 cyclin G2 IEA KEGG rno:04115 NCBI chr14:14,804,321...14,812,819
Ensembl chr14:14,804,322...14,812,830
JBrowse link
G Cd82 Cd82 molecule IEA KEGG rno:04115 NCBI chr 3:79,387,361...79,431,847
Ensembl chr 3:79,385,887...79,431,809
JBrowse link
G Cdk1 cyclin-dependent kinase 1 IEA KEGG rno:04115 NCBI chr20:19,266,226...19,281,417
Ensembl chr20:19,266,248...19,281,408
JBrowse link
G Cdk2 cyclin dependent kinase 2 ISO
IEA
PID
KEGG
PID:200206 rno:04115 NCBI chr 7:1,129,878...1,137,431
Ensembl chr 7:1,129,811...1,137,403
JBrowse link
G Cdk4 cyclin-dependent kinase 4 IEA KEGG rno:04115 NCBI chr 7:62,886,124...62,889,562
Ensembl chr 7:62,883,105...62,942,403
JBrowse link
G Cdk6 cyclin-dependent kinase 6 IEA KEGG rno:04115 NCBI chr 4:30,637,650...30,829,688
Ensembl chr 4:30,646,460...30,829,634
JBrowse link
G Cdkn1a cyclin-dependent kinase inhibitor 1A IEA KEGG rno:04115 NCBI chr20:7,149,177...7,159,727
Ensembl chr20:7,149,217...7,159,585
JBrowse link
G Cdkn2a cyclin-dependent kinase inhibitor 2A IEA KEGG rno:04115 NCBI chr 5:103,984,949...103,992,143
Ensembl chr 5:103,984,949...104,003,149
JBrowse link
G Chek1 checkpoint kinase 1 ISO
IEA
KEGG
PID
RGD
PMID:19450511 PMID:16601750 PID:200206 rno:04115, RGD:2316155, RGD:2316156 NCBI chr 8:36,420,565...36,443,477
Ensembl chr 8:36,420,569...36,441,009
JBrowse link
G Chek2 checkpoint kinase 2 ISO
IEA
KEGG
PID
RGD
PMID:19450511 PMID:16601750 PID:200206 rno:04115, RGD:2316155, RGD:2316156 NCBI chr12:45,788,823...45,821,382
Ensembl chr12:45,788,827...45,821,286
JBrowse link
G Cop1 COP1, E3 ubiquitin ligase IEA KEGG rno:04115 NCBI chr13:71,467,164...71,561,826
Ensembl chr13:71,429,961...71,538,890
JBrowse link
G Crebbp CREB binding protein ISO PID
RGD
PMID:19450511 PMID:20679336 PID:200206, RGD:2316155, RGD:8662965 NCBI chr10:11,335,551...11,461,888
Ensembl chr10:11,335,953...11,461,888
JBrowse link
G Cse1l chromosome segregation 1 like ISO PID PID:200206 NCBI chr 3:155,641,104...155,678,866
Ensembl chr 3:155,641,166...155,678,865
JBrowse link
G Csnk1a1 casein kinase 1, alpha 1 ISO PID PID:200206 NCBI chr18:55,017,049...55,050,184
Ensembl chr18:55,017,055...55,049,271
JBrowse link
G Csnk1d casein kinase 1, delta ISO PID PID:200206 NCBI chr10:106,221,992...106,256,620
Ensembl chr10:106,221,992...106,256,614
JBrowse link
G Csnk1e casein kinase 1, epsilon ISO PID PID:200206 NCBI chr 7:110,983,322...111,006,926
Ensembl chr 7:110,983,318...111,006,794
JBrowse link
G Csnk1g1 casein kinase 1, gamma 1 ISO PID PID:200206 NCBI chr 8:66,439,760...66,577,247
Ensembl chr 8:66,439,864...66,572,826
JBrowse link
G Csnk1g2 casein kinase 1, gamma 2 ISO PID PID:200206 NCBI chr 7:9,076,739...9,095,082
Ensembl chr 7:9,076,740...9,095,052
JBrowse link
G Csnk1g3 casein kinase 1, gamma 3 ISO PID PID:200206 NCBI chr18:47,299,547...47,386,538
Ensembl chr18:47,299,579...47,386,535
JBrowse link
G Cycs cytochrome c, somatic IEA KEGG rno:04115 NCBI chr 4:79,651,894...79,653,994
Ensembl chr 4:79,651,378...79,654,054
Ensembl chr18:79,651,378...79,654,054
JBrowse link
G Cyct cytochrome c, testis IEA KEGG rno:04115 NCBI chr 3:61,290,090...61,297,158
Ensembl chr 3:60,913,562...61,297,158
JBrowse link
G Daxx death-domain associated protein ISO PID PID:200206 NCBI chr20:4,970,090...4,976,145
Ensembl chr20:4,970,092...4,975,843
JBrowse link
G Dyrk2 dual specificity tyrosine phosphorylation regulated kinase 2 ISO PID PID:200206 NCBI chr 7:54,348,724...54,381,363
Ensembl chr 7:54,349,610...54,380,106
JBrowse link
G E4f1 E4F transcription factor 1 ISO PID PID:200206 NCBI chr10:13,471,478...13,495,018
Ensembl chr10:13,474,456...13,485,974
JBrowse link
G Ei24 EI24, autophagy associated transmembrane protein IEA KEGG rno:04115 NCBI chr 8:36,494,289...36,510,653
Ensembl chr 8:36,494,289...36,510,571
JBrowse link
G Ep300 E1A binding protein p300 ISO PID PID:200206 NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088
Ensembl chr 7:113,106,247...113,136,088
JBrowse link
G Fas Fas cell surface death receptor IEA KEGG rno:04115 NCBI chr 1:231,798,963...231,832,591
Ensembl chr 1:231,798,960...231,832,591
JBrowse link
G Fbxo11 F-box protein 11 ISO PID PID:200206 NCBI chr 6:6,486,761...6,562,664
Ensembl chr 6:6,486,015...6,562,662
JBrowse link
G Gadd45a growth arrest and DNA-damage-inducible, alpha IEA KEGG rno:04115 NCBI chr 4:96,154,789...96,157,091
Ensembl chr 4:96,154,789...96,157,115
JBrowse link
G Gadd45b growth arrest and DNA-damage-inducible, beta IEA KEGG rno:04115 NCBI chr 7:8,778,004...8,780,306
Ensembl chr 7:8,778,007...8,780,046
JBrowse link
G Gadd45g growth arrest and DNA-damage-inducible, gamma IEA KEGG rno:04115 NCBI chr17:13,376,842...13,378,587
Ensembl chr17:13,376,839...13,378,610
JBrowse link
G Gsk3b glycogen synthase kinase 3 beta ISO PID PID:200206 NCBI chr11:62,498,997...62,648,665
Ensembl chr11:62,504,316...62,648,646
JBrowse link
G Gtse1 G-2 and S-phase expressed 1 IEA KEGG rno:04115 NCBI chr 7:116,949,997...116,966,826
Ensembl chr 7:116,950,053...116,966,806
JBrowse link
G Hdac1 histone deacetylase 1 ISO RGD PMID:19450511 RGD:2316155 NCBI chr 5:141,853,992...141,881,057
Ensembl chr 5:141,853,989...141,881,111
JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 ISO PID PID:200206 NCBI chr 4:67,439,327...67,619,223
Ensembl chr 4:67,440,501...67,619,223
JBrowse link
G Huwe1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 ISO PID PID:200206 NCBI chr  X:20,873,795...21,001,378
Ensembl chr  X:20,873,795...21,001,262
JBrowse link
G Igf1 insulin-like growth factor 1 IEA KEGG rno:04115 NCBI chr 7:22,282,895...22,361,972
Ensembl chr 7:22,282,930...22,359,296
JBrowse link
G Igfbp3 insulin-like growth factor binding protein 3 IEA KEGG rno:04115 NCBI chr14:82,056,347...82,064,083
Ensembl chr14:82,056,347...82,064,083
JBrowse link
G Kat2a lysine acetyltransferase 2A ISO RGD PMID:20679336 RGD:8662965 NCBI chr10:85,632,216...85,640,561
Ensembl chr10:85,632,216...85,640,166
JBrowse link
G Kat2b lysine acetyltransferase 2B ISO RGD PMID:20679336 RGD:8662965 NCBI chr 9:6,562,525...6,667,064
Ensembl chr 9:6,562,288...6,667,064
JBrowse link
G Kat5 lysine acetyltransferase 5 ISO PID
RGD
PMID:19450511 PMID:20679336 PID:200206, RGD:2316155, RGD:8662965 NCBI chr 1:202,895,751...202,903,178
Ensembl chr 1:202,895,751...202,903,458
JBrowse link
G Kat8 lysine acetyltransferase 8 ISO PID
RGD
PMID:19450511 PID:200206, RGD:2316155 NCBI chr 1:182,524,355...182,536,638
Ensembl chr 1:182,515,327...182,536,633
JBrowse link
G Kmt5a lysine methyltransferase 5A ISO PID PID:200206 NCBI chr12:32,139,353...32,167,777
Ensembl chr12:32,139,178...32,162,711
JBrowse link
G Mapk14 mitogen activated protein kinase 14 ISO PID PID:200206 NCBI chr20:6,749,646...6,810,590
Ensembl chr20:6,749,670...6,810,589
JBrowse link
G Mapk8 mitogen-activated protein kinase 8 ISO PID PID:200206 NCBI chr16:8,638,897...8,721,960
Ensembl chr16:8,638,924...8,721,981
JBrowse link
G Mapk9 mitogen-activated protein kinase 9 ISO PID PID:200206 NCBI chr10:34,169,661...34,211,138
Ensembl chr10:34,169,675...34,210,178
JBrowse link
G Mdm2 MDM2 proto-oncogene ISO
IEA
KEGG
PID
RGD
PMID:19450511 PMID:16601750 PID:200206 rno:04115, RGD:2316155, RGD:2316156 NCBI chr 7:53,290,660...53,315,205
Ensembl chr 7:53,290,664...53,314,915
JBrowse link
G Mdm4 MDM4 regulator of p53 ISO
IEA
KEGG
PID
RGD
PMID:19450511 PMID:16601750 PID:200206 rno:04115, RGD:2316155, RGD:2316156 NCBI chr13:44,432,596...44,516,165
Ensembl chr13:44,406,213...44,474,226
JBrowse link
G Muc1 mucin 1, cell surface associated ISO RGD PMID:20679336 RGD:8662965 NCBI chr 2:174,635,989...174,640,738
Ensembl chr 2:174,635,995...174,640,733
JBrowse link
G Nedd8 NEDD8 ubiquitin like modifier ISO PID PID:200206 NCBI chr15:29,153,556...29,165,575
Ensembl chr15:29,153,556...29,166,160
JBrowse link
G Perp p53 apoptosis effector related to PMP22 IEA KEGG rno:04115 NCBI chr 1:13,542,067...13,554,514
Ensembl chr 1:13,542,067...13,554,511
JBrowse link
G Pin1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 ISO PID
RGD
PMID:20679336 PID:200206, RGD:8662965 NCBI chr 8:19,189,408...19,200,785
Ensembl chr 8:19,189,373...19,200,785
JBrowse link
G Pmaip1 phorbol-12-myristate-13-acetate-induced protein 1 IEA KEGG rno:04115 NCBI chr18:59,986,020...59,992,434
Ensembl chr18:59,986,017...59,992,429
JBrowse link
G Pou4f1 POU class 4 homeobox 1 ISO RGD PMID:20679336 RGD:8662965 NCBI chr15:81,253,714...81,260,057
Ensembl chr15:81,257,781...81,259,728
JBrowse link
G Pou4f2 POU class 4 homeobox 2 ISO RGD PMID:20679336 RGD:8662965 NCBI chr19:29,486,686...29,490,327
Ensembl chr19:29,486,686...29,490,327
JBrowse link
G Ppm1d protein phosphatase, Mg2+/Mn2+ dependent, 1D ISO
IEA
PID
KEGG
PID:200206 rno:04115 NCBI chr10:70,172,603...70,208,607
Ensembl chr10:70,172,603...70,208,607
JBrowse link
G Ppp1r13b protein phosphatase 1, regulatory subunit 13B ISO RGD PMID:20679336 RGD:8662965 NCBI chr 6:130,890,682...130,963,845
Ensembl chr 6:130,890,679...130,963,330
JBrowse link
G Ppp1r13l protein phosphatase 1, regulatory subunit 13 like ISO PID
RGD
PMID:20679336 PID:200206, RGD:8662965 NCBI chr 1:79,010,997...79,030,714
Ensembl chr 1:79,011,745...79,030,712
JBrowse link
G Ppp2ca protein phosphatase 2 catalytic subunit alpha ISO PID PID:200206 NCBI chr10:36,358,110...36,377,864
Ensembl chr10:36,358,101...36,377,862
JBrowse link
G Prkcd protein kinase C, delta ISO PID PID:200206 NCBI chr16:5,769,217...5,799,380
Ensembl chr16:5,769,215...5,799,352
JBrowse link
G Prmt5 protein arginine methyltransferase 5 ISO PID PID:200206 NCBI chr15:27,968,893...27,978,291
Ensembl chr15:27,968,910...27,978,296
JBrowse link
G Pten phosphatase and tensin homolog IEA KEGG rno:04115 NCBI chr 1:230,630,443...230,697,070
Ensembl chr 1:230,630,338...230,696,838
JBrowse link
G Ptpa protein phosphatase 2 phosphatase activator ISO PID PID:200206 NCBI chr 3:13,689,742...13,720,287
Ensembl chr 3:13,689,741...13,722,549
JBrowse link
G Rassf1 Ras association domain family member 1 ISO PID PID:200206 NCBI chr 8:108,225,023...108,236,164
Ensembl chr 8:108,225,023...108,236,164
JBrowse link
G Rchy1 ring finger and CHY zinc finger domain containing 1 ISO
IEA
KEGG
PID
RGD
PMID:19450511 PID:200206 rno:04115, RGD:2316155 NCBI chr14:16,113,263...16,129,017
Ensembl chr14:16,113,224...16,129,167
JBrowse link
G Rpl11 ribosomal protein L11 ISO PID PID:200206 NCBI chr 5:148,274,060...148,277,708
Ensembl chr 5:148,274,069...148,277,599
JBrowse link
G Rpl23 ribosomal protein L23 ISO PID PID:200206 NCBI chr10:82,771,878...82,775,840
Ensembl chr10:82,771,538...82,775,870
JBrowse link
G Rpl5 ribosomal protein L5 ISO PID PID:200206 NCBI chr14:1,843,856...1,850,301
Ensembl chr14:1,843,770...1,850,290
JBrowse link
G Rpl5l1 ribosomal protein L5-like 1 ISO PID PID:200206 NCBI chr 9:113,949,013...113,949,987 JBrowse link
G Rprm reprimo, TP53 dependent G2 arrest mediator homolog IEA KEGG rno:04115 NCBI chr 3:38,539,581...38,540,998
Ensembl chr 3:38,539,581...38,540,998
JBrowse link
G Rrm2 ribonucleotide reductase regulatory subunit M2 IEA KEGG rno:04115 NCBI chr 6:41,339,858...41,346,774
Ensembl chr 6:41,340,557...41,346,773
JBrowse link
G Rrm2b ribonucleotide reductase regulatory TP53 inducible subunit M2B IEA KEGG rno:04115 NCBI chr 7:69,077,024...69,108,742
Ensembl chr 7:69,078,291...69,108,633
JBrowse link
G Serpinb5 serpin family B member 5 IEA KEGG rno:04115 NCBI chr13:22,985,557...23,005,756
Ensembl chr13:22,985,557...23,005,756
JBrowse link
G Serpine1 serpin family E member 1 IEA KEGG rno:04115 NCBI chr12:19,601,272...19,611,657
Ensembl chr12:19,601,272...19,611,657
JBrowse link
G Sesn1 sestrin 1 IEA KEGG rno:04115 NCBI chr20:45,294,876...45,387,698
Ensembl chr20:45,294,871...45,387,697
JBrowse link
G Sesn3 sestrin 3 IEA KEGG rno:04115 NCBI chr 8:11,133,822...11,189,436
Ensembl chr 8:11,133,678...11,185,842
JBrowse link
G Setd7 SET domain containing 7, histone lysine methyltransferase ISO PID
RGD
PMID:19450511 PID:200206, RGD:2316155 NCBI chr 2:135,562,683...135,605,468
Ensembl chr 2:135,562,683...135,605,468
JBrowse link
G Sfn stratifin IEA KEGG rno:04115 NCBI chr 5:145,826,722...145,827,994
Ensembl chr 5:145,826,201...145,831,314
JBrowse link
G Shisa5 shisa family member 5 IEA KEGG rno:04115 NCBI chr 8:109,691,504...109,706,411
Ensembl chr 8:109,691,522...109,706,408
JBrowse link
G Siah1 siah E3 ubiquitin protein ligase 1 IEA KEGG rno:04115 NCBI chr19:20,378,908...20,402,512
Ensembl chr19:20,378,439...20,403,808
JBrowse link
G Sirt1 sirtuin 1 ISO RGD PMID:19450511 RGD:2316155 NCBI chr20:25,307,225...25,329,273
Ensembl chr20:25,306,917...25,329,260
JBrowse link
G Skp2 S-phase kinase associated protein 2 ISO PID PID:200206 NCBI chr 2:58,161,226...58,189,293
Ensembl chr 2:58,161,229...58,189,338
JBrowse link
G Smyd2 SET and MYND domain containing 2 ISO PID
RGD
PMID:19450511 PID:200206, RGD:2316155 NCBI chr13:101,425,270...101,466,576
Ensembl chr13:101,425,273...101,466,576
JBrowse link
G Steap3 STEAP3 metalloreductase IEA KEGG rno:04115 NCBI chr13:31,351,954...31,397,344
Ensembl chr13:31,351,954...31,396,519
JBrowse link
G Tp53 tumor protein p53 ISO
IEA
KEGG
PID
RGD
PMID:19450511 PMID:16601750 PID:200206 rno:04115, RGD:2316155, RGD:2316156 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
JBrowse link
G Tp53bp2 tumor protein p53 binding protein, 2 ISO RGD PMID:20679336 RGD:8662965 NCBI chr13:94,088,769...94,145,436
Ensembl chr13:94,088,709...94,145,432
JBrowse link
G Tp73 tumor protein p73 IEA KEGG rno:04115 NCBI chr 5:164,621,377...164,703,958
Ensembl chr 5:164,621,377...164,681,128
JBrowse link
G Trim28 tripartite motif-containing 28 ISO PID PID:200206 NCBI chr 1:73,652,441...73,659,388
Ensembl chr 1:73,652,709...73,659,380
JBrowse link
G Tsc2 TSC complex subunit 2 IEA KEGG rno:04115 NCBI chr10:13,621,135...13,655,773
Ensembl chr10:13,621,136...13,655,951
JBrowse link
G Ttc5 tetratricopeptide repeat domain 5 ISO PID PID:200206 NCBI chr15:23,993,046...24,010,710
Ensembl chr15:23,993,048...24,010,668
JBrowse link
G Ube2d1 ubiquitin-conjugating enzyme E2D 1 ISO PID PID:200206 NCBI chr20:17,309,315...17,343,770
Ensembl chr20:17,309,315...17,342,295
JBrowse link
G Usp7 ubiquitin specific peptidase 7 ISO PID
RGD
PMID:19450511 PID:200206, RGD:2316155 NCBI chr10:6,880,684...6,925,355
Ensembl chr10:6,828,795...6,925,355
JBrowse link
G Ybx1 Y box binding protein 1 ISO RGD PMID:20679336 RGD:8662965 NCBI chr 5:132,882,137...132,898,885
Ensembl chr 5:132,882,145...132,898,862
JBrowse link
G Yy1 YY1 transcription factor ISO PID PID:200206 NCBI chr 6:127,706,739...127,736,499
Ensembl chr 6:127,707,596...127,732,747
JBrowse link
G Zfp385a zinc finger protein 385A ISO RGD PMID:20679336 RGD:8662965 NCBI chr 7:134,448,914...134,475,548
Ensembl chr 7:134,448,921...134,475,548
JBrowse link
G Zfp420 zinc finger protein 420 ISO RGD PMID:20679336 RGD:8662965 NCBI chr 1:85,092,810...85,143,682
Ensembl chr 1:85,093,085...85,106,693
Ensembl chr 1:85,093,085...85,106,693
JBrowse link
G Zmat3 zinc finger, matrin type 3 IEA KEGG rno:04115 NCBI chr 2:115,106,046...115,136,888
Ensembl chr 2:115,106,966...115,136,863
JBrowse link
G Znhit1 zinc finger, HIT-type containing 1 ISO RGD PMID:20679336 RGD:8662965 NCBI chr12:19,686,606...19,692,880
Ensembl chr12:19,686,148...19,692,880
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 6098
    regulatory pathway 3874
      stress response pathway 198
        altered stress response pathway + 13
        endoplasmic reticulum stress - the unfolded protein response pathway 11
        mitochondrial unfolded protein response pathway 0
        oxidative stress response pathway + 63
        p53 signaling pathway + 129
paths to the root