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ONTOLOGY REPORT - ANNOTATIONS


Term:O-linked glycan biosynthetic pathway
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Accession:PW:0000194 term browser browse the term
Definition:Those metabolic reactions involved in the synthesis of O-linked glycans. Sugars are serially added to a fully synthesized polypeptide chain. The initial step involves the transfer of N-acetylgalactosamine to the carboxy group of a serine or threonine. The location of the residue appears to be dictated by structure rather than amino acid signature.
Synonyms:related_synonym: KEGG:00512;   KEGG:00514


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O-linked glycan biosynthetic pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G B3gnt6 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 JBrowse link 1 163,143,027 163,149,496 RGD:6907045
G B4galt1 beta-1,4-galactosyltransferase 1 JBrowse link 5 57,121,768 57,168,610 RGD:6907045
G B4galt2 beta-1,4-galactosyltransferase 2 JBrowse link 5 136,707,510 136,717,345 RGD:6907045
G B4galt3 beta-1,4-galactosyltransferase 3 JBrowse link 13 89,643,847 89,649,880 RGD:6907045
G B4galt5 beta-1,4-galactosyltransferase 5 JBrowse link 3 164,039,731 164,055,561 RGD:6907045
G C1galt1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 JBrowse link 4 33,890,353 33,943,219 RGD:6907045
G C1galt1c1 C1GALT1-specific chaperone 1 JBrowse link X 124,921,686 124,926,171 RGD:6907045
G Chst10 carbohydrate sulfotransferase 10 JBrowse link 9 45,528,928 45,559,365 RGD:6907045
G Colgalt1 collagen beta(1-O)galactosyltransferase 1 JBrowse link 16 20,039,969 20,052,277 RGD:6907045
G Colgalt2 collagen beta(1-O)galactosyltransferase 2 JBrowse link 13 69,797,558 69,902,916 RGD:6907045
G Fut4 fucosyltransferase 4 JBrowse link 8 13,258,768 13,262,729 RGD:6907045
G Fut7 fucosyltransferase 7 JBrowse link 3 2,637,281 2,646,497 RGD:6907045
G Fut9 fucosyltransferase 9 JBrowse link 5 40,032,855 40,237,591 RGD:6907045
G Galnt1 polypeptide N-acetylgalactosaminyltransferase 1 JBrowse link 18 16,141,062 16,187,271 RGD:6907045
G Galnt10 polypeptide N-acetylgalactosaminyltransferase 10 JBrowse link 10 43,067,316 43,208,992 RGD:6907045
G Galnt11 polypeptide N-acetylgalactosaminyltransferase 11 JBrowse link 4 6,297,255 6,330,765 RGD:6907045
G Galnt12 polypeptide N-acetylgalactosaminyltransferase 12 JBrowse link 5 62,718,733 62,751,345 RGD:6907045
G Galnt13 polypeptide N-acetylgalactosaminyltransferase 13 JBrowse link 3 39,967,056 40,625,144 RGD:6907045
G Galnt14 polypeptide N-acetylgalactosaminyltransferase 14 JBrowse link 6 24,770,308 24,985,711 RGD:6907045
G Galnt16 polypeptide N-acetylgalactosaminyltransferase 16 JBrowse link 6 104,069,853 104,250,177 RGD:6907045
G Galnt17 polypeptide N-acetylgalactosaminyltransferase 17 JBrowse link 12 28,381,879 29,268,457 RGD:6907045
G Galnt18 polypeptide N-acetylgalactosaminyltransferase 18 JBrowse link 1 176,296,186 176,607,466 RGD:6907045
G Galnt2 polypeptide N-acetylgalactosaminyltransferase 2 JBrowse link 19 57,043,858 57,115,123 RGD:6907045
G Galnt3 polypeptide N-acetylgalactosaminyltransferase 3 JBrowse link 3 52,174,469 52,212,395 RGD:6907045
G Galnt4 polypeptide N-acetylgalactosaminyltransferase 4 JBrowse link 7 41,305,437 41,309,621 RGD:6907045
G Galnt5 polypeptide N-acetylgalactosaminyltransferase 5 JBrowse link 3 44,025,964 44,072,073 RGD:6907045
G Galnt6 polypeptide N-acetylgalactosaminyltransferase 6 JBrowse link 7 142,322,172 142,364,281 RGD:6907045
G Galnt7 polypeptide N-acetylgalactosaminyltransferase 7 JBrowse link 16 35,935,059 36,062,734 RGD:6907045
G Galntl5 polypeptide N-acetylgalactosaminyltransferase-like 5 JBrowse link 4 6,333,049 6,450,137 RGD:6907045
G Galntl6 polypeptide N-acetylgalactosaminyltransferase-like 6 JBrowse link 16 34,551,052 35,803,840 RGD:6907045
G Gcnt1 glucosaminyl (N-acetyl) transferase 1 JBrowse link 1 236,547,729 236,585,037 RGD:6907045
G Gcnt3 glucosaminyl (N-acetyl) transferase 3, mucin type JBrowse link 8 76,449,078 76,459,431 RGD:6907045
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase JBrowse link 12 16,117,767 16,126,211 RGD:6907045
G Mfng MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase JBrowse link 7 119,978,981 119,996,824 RGD:6907045
G Mgat5b alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B JBrowse link 10 105,861,734 105,932,048 RGD:6907045
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase JBrowse link X 71,540,870 71,585,906 RGD:6907045
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 JBrowse link 12 22,716,421 22,726,982 RGD:6907045
G Pofut1 protein O-fucosyltransferase 1 JBrowse link 3 148,722,864 148,749,743 RGD:6907045
G Pofut2 protein O-fucosyltransferase 2 JBrowse link 20 12,117,811 12,128,747 RGD:6907045
G Pomgnt1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) JBrowse link 5 135,007,343 135,017,220 RGD:6907045
G Pomt1 protein-O-mannosyltransferase 1 JBrowse link 3 11,253,424 11,271,873 RGD:6907045
G Pomt2 protein-O-mannosyltransferase 2 JBrowse link 6 111,137,329 111,176,991 RGD:6907045
G Rfng RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase JBrowse link 10 109,963,726 109,966,821 RGD:6907045
G St3gal1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 JBrowse link 7 107,895,045 107,963,158 RGD:6907045
G St3gal2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 JBrowse link 19 43,273,251 43,324,265 RGD:6907045
G St3gal3 ST3 beta-galactoside alpha-2,3-sialyltransferase 3 JBrowse link 5 136,765,309 136,965,642 RGD:6907045
G St6gal1 ST6 beta-galactoside alpha-2,6-sialyltransferase 1 JBrowse link 11 80,927,601 80,981,424 RGD:6907045
G St6gal2 ST6 beta-galactoside alpha-2,6-sialyltransferase 2 JBrowse link 9 6,966,291 7,060,499 RGD:6907045
G St6galnac1 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 JBrowse link 10 105,713,305 105,723,700 RGD:6907045
G Ugt1a1 UDP glucuronosyltransferase family 1 member A1 JBrowse link 9 95,295,701 95,302,822 RGD:6907045
G Ugt1a2 UDP glucuronosyltransferase 1 family, polypeptide A2 JBrowse link 9 95,285,592 95,302,822 RGD:6907045
G Ugt1a3 UDP glycosyltransferase 1 family, polypeptide A3 JBrowse link 9 95,274,707 95,302,822 RGD:6907045
G Ugt1a5 UDP glucuronosyltransferase family 1 member A5 JBrowse link 9 95,256,628 95,302,822 RGD:6907045
G Ugt1a6 UDP glucuronosyltransferase family 1 member A6 JBrowse link 9 95,241,609 95,302,822 RGD:6907045
G Ugt1a7c UDP glucuronosyltransferase 1 family, polypeptide A7C JBrowse link 9 95,233,957 95,302,822 RGD:6907045
G Ugt1a8 UDP glucuronosyltransferase family 1 member A8 JBrowse link 9 95,221,474 95,302,822 RGD:6907045
G Ugt1a9 UDP glucuronosyltransferase family 1 member A9 JBrowse link 9 95,161,157 95,302,822 RGD:6907045
G Ugt2a1 UDP glucuronosyltransferase family 2 member A1 JBrowse link 14 22,192,970 22,217,094 RGD:6907045
G Ugt2a3 UDP glucuronosyltransferase family 2 member A3 JBrowse link 14 22,251,507 22,267,899 RGD:6907045
G Ugt2b UDP glycosyltransferase 2 family, polypeptide B RGD:6907045
G Ugt2b17 UDP glucuronosyltransferase family 2 member B17 JBrowse link 14 22,724,399 22,736,148 RGD:6907045
G Ugt2b37 UDP-glucuronosyltransferase 2 family, member 37 JBrowse link 14 22,495,084 22,534,865 RGD:6907045

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Path 1
Term Annotations click to browse term
  pathway 6063
    classic metabolic pathway 1852
      carbohydrate metabolic pathway 525
        glycan metabolic pathway 190
          O-linked glycan biosynthetic pathway 62
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.