PATHWAY ONTOLOGY - ANNOTATIONS
The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml ).
Term: metabolic pathway of secondary metabolites
Accession: PW:0000147
browse the term
Definition: Those reactions involved in the synthesis, utilization and/or degradation of secondary metabolites - products of cellular metabolism that are not essential for, or not directly involved in the normal growth, development or reproduction of an organism. Many of the chemicals that plants or microorganisms produce are secondary metabolites.
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Gck
glucokinase
IEA
KEGG
rno:00524
NCBI chr14:84,999,019...85,041,098
Ensembl chr14:80,785,060...80,826,995
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Hk1
hexokinase 1
IEA
KEGG
rno:00524
NCBI chr20:30,773,222...30,874,814
Ensembl chr20:30,230,486...30,332,131
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Hk2
hexokinase 2
IEA
KEGG
rno:00524
NCBI chr 4:116,792,258...116,841,275
Ensembl chr 4:115,234,509...115,283,530
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Hk3
hexokinase 3
IEA
KEGG
rno:00524
NCBI chr17:9,602,119...9,620,038
Ensembl chr17:9,599,865...9,614,863
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Cyp1a2
cytochrome P450, family 1, subfamily a, polypeptide 2
IEA
KEGG
rno:00232
NCBI chr 8:66,971,261...66,978,149
Ensembl chr 8:58,075,367...58,082,312
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Cyp2a1
cytochrome P450, family 2, subfamily a, polypeptide 1
IEA
KEGG
rno:00232
NCBI chr 1:91,359,278...91,372,554
Ensembl chr 1:82,231,611...82,244,887
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Cyp2a2
cytochrome P450, family 2, subfamily a, polypeptide 2
IEA
KEGG
rno:00232
NCBI chr 1:91,391,492...91,417,158
Ensembl chr 1:82,263,833...82,289,487
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Cyp2a3
cytochrome P450, family 2, subfamily a, polypeptide 3
IEA
KEGG
rno:00232
NCBI chr 1:91,299,584...91,307,650
Ensembl chr 1:82,169,949...82,179,979
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Nat1
N-acetyltransferase 1
IEA
KEGG
rno:00232
NCBI chr16:26,984,882...27,005,194
Ensembl chr16:22,208,194...22,238,520
G
Nat2
N-acetyltransferase 2
IEA
KEGG
rno:00232
NCBI chr16:26,974,874...27,005,191
Ensembl chr16:22,208,194...22,238,520
G
Nat3
N-acetyltransferase 3
IEA
KEGG
rno:00232
NCBI chr16:22,149,605...22,175,962
Ensembl chr16:22,150,431...22,151,303
G
Uox
urate oxidase
IEA
KEGG
rno:00232
NCBI chr 2:238,147,130...238,183,320
Ensembl chr 2:235,440,619...235,523,029
G
Xdh
xanthine dehydrogenase
IEA
KEGG
rno:00232
NCBI chr 6:27,282,319...27,344,022
Ensembl chr 6:21,530,113...21,592,268
G
Aox1
aldehyde oxidase 1
IEA
KEGG
rno:00760
NCBI chr 9:67,073,831...67,152,980
Ensembl chr 9:59,579,649...59,658,770
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Aox2
aldehyde oxidase 2
IEA
KEGG
rno:00760
NCBI chr 9:67,322,291...67,411,694
Ensembl chr 9:59,828,084...59,916,146
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Bst1
bone marrow stromal cell antigen 1
IEA
KEGG
rno:00760
NCBI chr14:71,466,179...71,482,671
Ensembl chr14:67,252,998...67,270,180
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Cd38
CD38 molecule
IEA
KEGG
rno:00760
NCBI chr14:71,384,532...71,424,794
Ensembl chr14:67,172,063...67,211,986
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Enpp1
ectonucleotide pyrophosphatase/phosphodiesterase 1
IEA
KEGG
rno:00760
NCBI chr 1:22,518,051...22,583,044
Ensembl chr 1:20,698,764...20,763,715
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Enpp3
ectonucleotide pyrophosphatase/phosphodiesterase 3
IEA
KEGG
rno:00760
NCBI chr 1:22,382,717...22,454,324
Ensembl chr 1:20,563,697...20,635,041
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Nadk
NAD kinase
IEA
KEGG
rno:00760
NCBI chr 5:171,427,973...171,458,586
Ensembl chr 5:166,145,481...166,176,322
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Nadsyn1
NAD synthetase 1
IEA
KEGG
rno:00760
NCBI chr 1:208,410,914...208,439,242
Ensembl chr 1:198,981,604...199,009,869
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Nampt
nicotinamide phosphoribosyltransferase
IEA
KEGG
rno:00760
NCBI chr 6:55,152,756...55,189,547
Ensembl chr 6:49,424,332...49,462,100
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Naprt
nicotinate phosphoribosyltransferase
IEA
KEGG
rno:00760
NCBI chr 7:109,457,328...109,460,817
Ensembl chr 7:107,576,627...107,580,102
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Nmnat1
nicotinamide nucleotide adenylyltransferase 1
IEA
KEGG
rno:00760
NCBI chr 5:165,193,301...165,211,213
Ensembl chr 5:159,910,242...159,928,180
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Nmnat2
nicotinamide nucleotide adenylyltransferase 2
IEA
KEGG
rno:00760
NCBI chr13:65,105,950...65,277,350
Ensembl chr13:65,105,950...65,278,484
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Nnmt
nicotinamide N-methyltransferase
IEA
KEGG
rno:00760
NCBI chr 8:57,820,156...57,851,301
Ensembl chr 8:48,933,598...48,946,655
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Nnt
nicotinamide nucleotide transhydrogenase
IEA
KEGG
rno:00760
NCBI chr 2:53,144,157...53,237,857
Ensembl chr 2:51,411,413...51,504,823
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Nt5c1a
5'-nucleotidase, cytosolic IA
IEA
KEGG
rno:00760
NCBI chr 5:135,473,107...135,494,400
Ensembl chr 5:135,473,231...135,499,338
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Nt5c1b
5'-nucleotidase, cytosolic IB
IEA
KEGG
rno:00760
NCBI chr 6:33,139,053...33,156,489
Ensembl chr 6:33,139,064...33,156,481
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Nt5c3a
5'-nucleotidase, cytosolic IIIA
IEA
KEGG
rno:00760
NCBI chr 4:87,491,828...87,534,838
Ensembl chr 4:86,161,643...86,204,628
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Nt5e
5' nucleotidase, ecto
IEA
KEGG
rno:00760
NCBI chr 8:98,150,925...98,195,646
Ensembl chr 8:89,270,696...89,314,881
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Nt5m
5',3'-nucleotidase, mitochondrial
IEA
KEGG
rno:00760
NCBI chr10:45,151,902...45,178,687
Ensembl chr10:44,652,975...44,679,150
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Nudt12
nudix hydrolase 12
IEA
KEGG
rno:00760
NCBI chr 9:106,188,930...106,202,340
Ensembl chr 9:98,742,360...98,755,039
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Qprt
quinolinate phosphoribosyltransferase
IEA
KEGG
rno:00760
NCBI chr 1:191,148,715...191,164,006
Ensembl chr 1:181,718,190...181,733,486
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Acat1
acetyl-CoA acetyltransferase 1
IEA
KEGG
rno:00900
NCBI chr 8:62,876,003...62,905,080
Ensembl chr 8:53,979,813...54,008,855
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Acat2
acetyl-CoA acetyltransferase 2
IEA
KEGG
rno:00900
NCBI chr 1:50,100,840...50,118,886
Ensembl chr 1:47,695,788...47,752,821
G
Dhdds
dehydrodolichyl diphosphate synthase subunit
IEA
KEGG
rno:00900
NCBI chr 5:146,198,359...146,224,479
Ensembl chr 5:146,197,457...146,224,454
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Fdps
farnesyl diphosphate synthase
IEA
KEGG
rno:00900
NCBI chr 2:176,795,192...176,804,816
Ensembl chr 2:174,486,665...174,507,776
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Ggps1
geranylgeranyl diphosphate synthase 1
IEA
KEGG
rno:00900
NCBI chr17:55,958,750...55,982,762
Ensembl chr17:51,263,263...51,276,220
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Hmgcr
3-hydroxy-3-methylglutaryl-CoA reductase
IEA
KEGG
rno:00900
NCBI chr 2:29,732,163...29,754,276
Ensembl chr 2:27,997,525...28,019,703
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Hmgcs1
3-hydroxy-3-methylglutaryl-CoA synthase 1
IEA
KEGG
rno:00900
NCBI chr 2:53,379,457...53,399,807
Ensembl chr 2:51,649,497...51,667,100
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Hmgcs2
3-hydroxy-3-methylglutaryl-CoA synthase 2
IEA
KEGG
rno:00900
NCBI chr 2:188,564,348...188,590,872
Ensembl chr 2:185,875,616...185,902,130
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Idi1
isopentenyl-diphosphate delta isomerase 1
IEA
KEGG
rno:00900
NCBI chr17:66,539,761...66,547,524
Ensembl chr17:61,629,594...61,637,357
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Idi2l3
isopentenyl-diphosphate delta isomerase 2 like 3
IEA
KEGG
rno:00900
NCBI chr17:66,243,932...66,258,028
Ensembl chr17:61,519,390...61,531,603
G
Mvd
mevalonate diphosphate decarboxylase
IEA
KEGG
rno:00900
NCBI chr19:67,404,911...67,414,974
Ensembl chr19:50,496,367...50,507,971
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Mvk
mevalonate kinase
IEA
KEGG
rno:00900
NCBI chr12:47,802,002...47,819,503
Ensembl chr12:42,141,384...42,158,882
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Pdss2
decaprenyl diphosphate synthase subunit 2
IEA
KEGG
rno:00900
NCBI chr20:48,291,788...48,520,846
Ensembl chr20:46,709,649...46,938,708
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Pmvk
phosphomevalonate kinase
IEA
KEGG
rno:00900
NCBI chr 2:177,174,344...177,184,076
Ensembl chr 2:174,876,657...174,886,364
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all