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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:metabolic pathway of secondary metabolites
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Accession:PW:0000147 term browser browse the term
Definition:Those reactions involved in the synthesis, utilization and/or degradation of secondary metabolites - products of cellular metabolism that are not essential for, or not directly involved in the normal growth, development or reproduction of an organism. Many of the chemicals that plants or microorganisms produce are secondary metabolites.



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butirosin and neomycin biosynthetic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gck glucokinase IEA KEGG rno:00524 NCBI chr14:84,999,019...85,041,098
Ensembl chr14:80,785,060...80,826,995
JBrowse link
G Hk1 hexokinase 1 IEA KEGG rno:00524 NCBI chr20:30,773,222...30,874,814
Ensembl chr20:30,230,486...30,332,131
JBrowse link
G Hk2 hexokinase 2 IEA KEGG rno:00524 NCBI chr 4:116,792,258...116,841,275
Ensembl chr 4:115,234,509...115,283,530
JBrowse link
G Hk3 hexokinase 3 IEA KEGG rno:00524 NCBI chr17:9,602,119...9,620,038
Ensembl chr17:9,599,865...9,614,863
JBrowse link
caffeine metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp1a2 cytochrome P450, family 1, subfamily a, polypeptide 2 IEA KEGG rno:00232 NCBI chr 8:66,971,261...66,978,149
Ensembl chr 8:58,075,367...58,082,312
JBrowse link
G Cyp2a1 cytochrome P450, family 2, subfamily a, polypeptide 1 IEA KEGG rno:00232 NCBI chr 1:91,359,278...91,372,554
Ensembl chr 1:82,231,611...82,244,887
JBrowse link
G Cyp2a2 cytochrome P450, family 2, subfamily a, polypeptide 2 IEA KEGG rno:00232 NCBI chr 1:91,391,492...91,417,158
Ensembl chr 1:82,263,833...82,289,487
JBrowse link
G Cyp2a3 cytochrome P450, family 2, subfamily a, polypeptide 3 IEA KEGG rno:00232 NCBI chr 1:91,299,584...91,307,650
Ensembl chr 1:82,169,949...82,179,979
JBrowse link
G Nat1 N-acetyltransferase 1 IEA KEGG rno:00232 NCBI chr16:26,984,882...27,005,194
Ensembl chr16:22,208,194...22,238,520
JBrowse link
G Nat2 N-acetyltransferase 2 IEA KEGG rno:00232 NCBI chr16:26,974,874...27,005,191
Ensembl chr16:22,208,194...22,238,520
JBrowse link
G Nat3 N-acetyltransferase 3 IEA KEGG rno:00232 NCBI chr16:22,149,605...22,175,962
Ensembl chr16:22,150,431...22,151,303
JBrowse link
G Uox urate oxidase IEA KEGG rno:00232 NCBI chr 2:238,147,130...238,183,320
Ensembl chr 2:235,440,619...235,523,029
JBrowse link
G Xdh xanthine dehydrogenase IEA KEGG rno:00232 NCBI chr 6:27,282,319...27,344,022
Ensembl chr 6:21,530,113...21,592,268
JBrowse link
monoterpenoid biosynthetic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aox1 aldehyde oxidase 1 IEA KEGG rno:00760 NCBI chr 9:67,073,831...67,152,980
Ensembl chr 9:59,579,649...59,658,770
JBrowse link
G Aox2 aldehyde oxidase 2 IEA KEGG rno:00760 NCBI chr 9:67,322,291...67,411,694
Ensembl chr 9:59,828,084...59,916,146
JBrowse link
G Bst1 bone marrow stromal cell antigen 1 IEA KEGG rno:00760 NCBI chr14:71,466,179...71,482,671
Ensembl chr14:67,252,998...67,270,180
JBrowse link
G Cd38 CD38 molecule IEA KEGG rno:00760 NCBI chr14:71,384,532...71,424,794
Ensembl chr14:67,172,063...67,211,986
JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 IEA KEGG rno:00760 NCBI chr 1:22,518,051...22,583,044
Ensembl chr 1:20,698,764...20,763,715
JBrowse link
G Enpp3 ectonucleotide pyrophosphatase/phosphodiesterase 3 IEA KEGG rno:00760 NCBI chr 1:22,382,717...22,454,324
Ensembl chr 1:20,563,697...20,635,041
JBrowse link
G Nadk NAD kinase IEA KEGG rno:00760 NCBI chr 5:171,427,973...171,458,586
Ensembl chr 5:166,145,481...166,176,322
JBrowse link
G Nadsyn1 NAD synthetase 1 IEA KEGG rno:00760 NCBI chr 1:208,410,914...208,439,242
Ensembl chr 1:198,981,604...199,009,869
JBrowse link
G Nampt nicotinamide phosphoribosyltransferase IEA KEGG rno:00760 NCBI chr 6:55,152,756...55,189,547
Ensembl chr 6:49,424,332...49,462,100
JBrowse link
G Naprt nicotinate phosphoribosyltransferase IEA KEGG rno:00760 NCBI chr 7:109,457,328...109,460,817
Ensembl chr 7:107,576,627...107,580,102
JBrowse link
G Nmnat1 nicotinamide nucleotide adenylyltransferase 1 IEA KEGG rno:00760 NCBI chr 5:165,193,301...165,211,213
Ensembl chr 5:159,910,242...159,928,180
JBrowse link
G Nmnat2 nicotinamide nucleotide adenylyltransferase 2 IEA KEGG rno:00760 NCBI chr13:65,105,950...65,277,350
Ensembl chr13:65,105,950...65,278,484
JBrowse link
G Nnmt nicotinamide N-methyltransferase IEA KEGG rno:00760 NCBI chr 8:57,820,156...57,851,301
Ensembl chr 8:48,933,598...48,946,655
JBrowse link
G Nnt nicotinamide nucleotide transhydrogenase IEA KEGG rno:00760 NCBI chr 2:53,144,157...53,237,857
Ensembl chr 2:51,411,413...51,504,823
JBrowse link
G Nt5c1a 5'-nucleotidase, cytosolic IA IEA KEGG rno:00760 NCBI chr 5:135,473,107...135,494,400
Ensembl chr 5:135,473,231...135,499,338
JBrowse link
G Nt5c1b 5'-nucleotidase, cytosolic IB IEA KEGG rno:00760 NCBI chr 6:33,139,053...33,156,489
Ensembl chr 6:33,139,064...33,156,481
JBrowse link
G Nt5c3a 5'-nucleotidase, cytosolic IIIA IEA KEGG rno:00760 NCBI chr 4:87,491,828...87,534,838
Ensembl chr 4:86,161,643...86,204,628
JBrowse link
G Nt5e 5' nucleotidase, ecto IEA KEGG rno:00760 NCBI chr 8:98,150,925...98,195,646
Ensembl chr 8:89,270,696...89,314,881
JBrowse link
G Nt5m 5',3'-nucleotidase, mitochondrial IEA KEGG rno:00760 NCBI chr10:45,151,902...45,178,687
Ensembl chr10:44,652,975...44,679,150
JBrowse link
G Nudt12 nudix hydrolase 12 IEA KEGG rno:00760 NCBI chr 9:106,188,930...106,202,340
Ensembl chr 9:98,742,360...98,755,039
JBrowse link
G Qprt quinolinate phosphoribosyltransferase IEA KEGG rno:00760 NCBI chr 1:191,148,715...191,164,006
Ensembl chr 1:181,718,190...181,733,486
JBrowse link
terpenoid biosynthetic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat1 acetyl-CoA acetyltransferase 1 IEA KEGG rno:00900 NCBI chr 8:62,876,003...62,905,080
Ensembl chr 8:53,979,813...54,008,855
JBrowse link
G Acat2 acetyl-CoA acetyltransferase 2 IEA KEGG rno:00900 NCBI chr 1:50,100,840...50,118,886
Ensembl chr 1:47,695,788...47,752,821
JBrowse link
G Dhdds dehydrodolichyl diphosphate synthase subunit IEA KEGG rno:00900 NCBI chr 5:146,198,359...146,224,479
Ensembl chr 5:146,197,457...146,224,454
JBrowse link
G Fdps farnesyl diphosphate synthase IEA KEGG rno:00900 NCBI chr 2:176,795,192...176,804,816
Ensembl chr 2:174,486,665...174,507,776
JBrowse link
G Ggps1 geranylgeranyl diphosphate synthase 1 IEA KEGG rno:00900 NCBI chr17:55,958,750...55,982,762
Ensembl chr17:51,263,263...51,276,220
JBrowse link
G Hmgcr 3-hydroxy-3-methylglutaryl-CoA reductase IEA KEGG rno:00900 NCBI chr 2:29,732,163...29,754,276
Ensembl chr 2:27,997,525...28,019,703
JBrowse link
G Hmgcs1 3-hydroxy-3-methylglutaryl-CoA synthase 1 IEA KEGG rno:00900 NCBI chr 2:53,379,457...53,399,807
Ensembl chr 2:51,649,497...51,667,100
JBrowse link
G Hmgcs2 3-hydroxy-3-methylglutaryl-CoA synthase 2 IEA KEGG rno:00900 NCBI chr 2:188,564,348...188,590,872
Ensembl chr 2:185,875,616...185,902,130
JBrowse link
G Idi1 isopentenyl-diphosphate delta isomerase 1 IEA KEGG rno:00900 NCBI chr17:66,539,761...66,547,524
Ensembl chr17:61,629,594...61,637,357
JBrowse link
G Idi2l3 isopentenyl-diphosphate delta isomerase 2 like 3 IEA KEGG rno:00900 NCBI chr17:66,243,932...66,258,028
Ensembl chr17:61,519,390...61,531,603
JBrowse link
G Mvd mevalonate diphosphate decarboxylase IEA KEGG rno:00900 NCBI chr19:67,404,911...67,414,974
Ensembl chr19:50,496,367...50,507,971
JBrowse link
G Mvk mevalonate kinase IEA KEGG rno:00900 NCBI chr12:47,802,002...47,819,503
Ensembl chr12:42,141,384...42,158,882
JBrowse link
G Pdss2 decaprenyl diphosphate synthase subunit 2 IEA KEGG rno:00900 NCBI chr20:48,291,788...48,520,846
Ensembl chr20:46,709,649...46,938,708
JBrowse link
G Pmvk phosphomevalonate kinase IEA KEGG rno:00900 NCBI chr 2:177,174,344...177,184,076
Ensembl chr 2:174,876,657...174,886,364
JBrowse link

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