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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:retinol metabolic pathway
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Accession:PW:0000141 term browser browse the term
Definition:Those reactions involving retinol, a fat-soluble vitamin that is the dietary form of vitamin A and is important for bone growth and in vision. Precursors of retinol such as carotenoid or retinyl esters are derived from diet and are converted to retinal and retinol, respectively.
Synonyms:related_synonym: Retinoid metabolism and transport;   retinol metabolic process

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retinol metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA1 ATP binding cassette subfamily A member 1 ISO RGD PMID:21718801 RGD:6484679 NCBI chr11:60,761,669...60,869,753
Ensembl chr11:60,761,655...60,890,496
JBrowse link
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO SMPDB SMP:00074 NCBI chr 1:84,940,411...84,994,789
Ensembl chr 1:84,940,411...84,994,789
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 ISO SMPDB
RGD
PMID:12547725 RGD:1576367 SMP:00074 NCBI chr30:23,074,432...23,170,374
Ensembl chr30:23,074,432...23,340,030
JBrowse link
G AWAT1 acyl-CoA wax alcohol acyltransferase 1 ISO SMPDB SMP:00074 NCBI chr  X:54,678,459...54,684,666
Ensembl chr  X:54,622,317...54,684,231
JBrowse link
G BCO1 beta-carotene oxygenase 1 ISO SMPDB
RGD
PMID:21569862 PMID:21718801 RGD:6484679 RGD:6903956 SMP:00074 NCBI chr 5:70,598,743...70,637,273
Ensembl chr 5:70,599,284...70,637,017
JBrowse link
G CD36 CD36 molecule (CD36 blood group) ISO RGD PMID:21718801 RGD:6484679 NCBI chr18:20,299,808...20,375,856
Ensembl chr18:20,339,050...20,372,639
JBrowse link
G CPNE6 copine 6 ISO SMPDB SMP:00074 NCBI chr 8:4,046,532...4,058,498
Ensembl chr 8:4,046,544...4,084,744
JBrowse link
G CYP26A1 cytochrome P450 family 26 subfamily A member 1 ISO SMPDB SMP:00074 NCBI chr28:7,423,955...7,432,359
Ensembl chr28:7,428,772...7,432,370
JBrowse link
G CYP2A13 cytochrome P450 family 2 subfamily A polypeptide 13 ISO SMPDB SMP:00074 NCBI chr 1:112,932,246...112,938,248
Ensembl chr 1:112,931,985...112,938,350
JBrowse link
G CYP2A7 cytochrome P450, family 2, subfamily A, polypeptide 7 ISO SMPDB SMP:00074 NCBI chr 1:112,900,508...112,906,745
Ensembl chr 1:112,900,403...112,907,076
JBrowse link
G CYP2B6 cytochrome P450 2B11 ISO SMPDB SMP:00074 NCBI chr 1:112,817,561...112,833,294
Ensembl chr 1:112,816,502...112,833,293
JBrowse link
G CYP3A4 cytochrome P450, family 3, subfamily A, polypeptide 4 ISO SMPDB SMP:00074 NCBI chr 6:9,836,685...9,869,520
Ensembl chr 6:9,777,659...9,869,352
JBrowse link
G DGAT1 diacylglycerol O-acyltransferase 1 ISO SMPDB SMP:00074 NCBI chr13:37,745,395...37,761,337
Ensembl chr13:37,741,706...37,756,916
JBrowse link
G DHRS3 dehydrogenase/reductase 3 ISO SMPDB SMP:00074 NCBI chr 2:83,826,361...83,865,412
Ensembl chr 2:83,826,374...83,865,426
JBrowse link
G DHRS9 dehydrogenase/reductase 9 ISO SMPDB SMP:00074 NCBI chr36:13,859,935...13,881,432
Ensembl chr36:13,866,959...13,880,179
JBrowse link
G DNAJB11 DnaJ heat shock protein family (Hsp40) member B11 ISO SMPDB SMP:00074 NCBI chr34:19,182,850...19,202,229
Ensembl chr34:19,182,400...19,202,238
JBrowse link
G ERP29 endoplasmic reticulum protein 29 ISO SMPDB SMP:00074 NCBI chr26:9,608,352...9,616,711
Ensembl chr26:9,608,399...9,616,338
JBrowse link
G HSP90B1 heat shock protein 90 beta family member 1 ISO SMPDB SMP:00074 NCBI chr15:42,456,793...42,474,122
Ensembl chr15:42,456,764...42,579,311
JBrowse link
G HSPA5 heat shock protein family A (Hsp70) member 5 ISO SMPDB SMP:00074 NCBI chr 9:57,850,870...57,855,607
Ensembl chr 9:57,850,922...57,855,257
JBrowse link
G HYOU1 hypoxia up-regulated 1 ISO SMPDB SMP:00074 NCBI chr 5:14,795,750...14,808,203
Ensembl chr 5:14,795,750...14,807,262
JBrowse link
G LOC100856533 alcohol dehydrogenase E chain ISO SMPDB SMP:00074 NCBI chr32:21,422,428...21,437,058 JBrowse link
G LRAT lecithin retinol acyltransferase ISO SMPDB
RGD
PMID:21718801 RGD:6484679 SMP:00074 NCBI chr15:52,399,773...52,409,590
Ensembl chr15:52,399,544...52,406,176
JBrowse link
G PDIA2 protein disulfide isomerase family A member 2 ISO SMPDB SMP:00074 NCBI chr 6:40,218,566...40,221,924
Ensembl chr 6:40,218,550...40,231,402
JBrowse link
G PDIA4 protein disulfide isomerase family A member 4 ISO SMPDB SMP:00074 NCBI chr16:1,797,537...1,818,877
Ensembl chr16:1,797,552...1,818,251
JBrowse link
G PDIA6 protein disulfide isomerase family A member 6 ISO SMPDB SMP:00074 NCBI chr17:7,653,834...7,674,136
Ensembl chr17:7,654,175...7,685,999
JBrowse link
G PLB1 phospholipase B1 ISO RGD PMID:8117729 PMID:21718801 RGD:6484679 RGD:6903951 NCBI chr17:22,420,679...22,558,318
Ensembl chr17:22,440,651...22,557,737
JBrowse link
G PNLIP pancreatic lipase ISO RGD PMID:21718801 RGD:6484679 NCBI chr28:27,139,028...27,156,457
Ensembl chr28:27,139,230...27,212,178
JBrowse link
G PNLIPRP2 pancreatic lipase related protein 2 ISO RGD PMID:21718801 RGD:6484679 NCBI chr28:27,190,641...27,212,185
Ensembl chr28:27,139,230...27,212,178
JBrowse link
G PNPLA4 patatin like phospholipase domain containing 4 ISO SMPDB SMP:00074 NCBI chr  X:4,775,702...4,925,027
Ensembl chr  X:4,874,240...4,924,976
JBrowse link
G PPIB peptidylprolyl isomerase B ISO SMPDB SMP:00074 NCBI chr30:28,654,193...28,660,129
Ensembl chr30:28,654,200...28,788,801
JBrowse link
G RBP2 retinol binding protein 2 ISO RGD PMID:21718801 RGD:6484679 NCBI chr23:35,619,215...35,642,249
Ensembl chr23:35,619,221...35,642,213
JBrowse link
G RDH11 retinol dehydrogenase 11 ISO SMPDB SMP:00074 NCBI chr 8:41,651,970...41,669,661
Ensembl chr 8:41,614,921...41,669,576
JBrowse link
G RDH12 retinol dehydrogenase 12 ISO SMPDB SMP:00074 NCBI chr 8:41,685,045...41,696,120
Ensembl chr 8:41,684,996...41,695,447
JBrowse link
G RDH16 retinol dehydrogenase 16 ISO SMPDB SMP:00074 NCBI chr10:1,124,322...1,134,138
Ensembl chr10:1,124,320...1,130,453
JBrowse link
G RDH8 retinol dehydrogenase 8 ISO SMPDB SMP:00074 NCBI chr20:51,029,633...51,035,910
Ensembl chr20:51,029,609...51,035,951
JBrowse link
G RETSAT retinol saturase ISO SMPDB SMP:00074 NCBI chr17:39,668,185...39,682,166
Ensembl chr17:39,668,256...39,680,560
JBrowse link
G RPE65 retinoid isomerohydrolase RPE65 ISO SMPDB SMP:00074 NCBI chr 6:76,887,399...76,911,133
Ensembl chr 6:76,887,399...76,911,131
JBrowse link
G SCARB1 scavenger receptor class B member 1 ISO RGD PMID:21718801 RGD:6484679 NCBI chr26:5,035,797...5,122,383
Ensembl chr26:5,049,407...5,121,468
JBrowse link
G SDF2L1 stromal cell derived factor 2 like 1 ISO SMPDB SMP:00074 NCBI chr26:30,918,788...30,920,873
Ensembl chr26:30,918,811...30,920,868
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 4046
    classic metabolic pathway 1010
      metabolic pathway pertinent to the brain 92
        retinoid metabolic pathway 58
          retinol metabolic pathway 39
Path 2
Term Annotations click to browse term
  pathway 4046
    regulatory pathway 2499
      homeostasis pathway 1305
        organic chemical homeostasis pathway 363
          vitamin homeostasis 102
            vitamin A homeostasis 102
              retinoid metabolic pathway 58
                retinol metabolic pathway 39
paths to the root