Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:metabolic pathway of cofactors, vitamins, nutrients
go back to main search page
Accession:PW:0000135 term browser browse the term
Definition:Those reactions involved in the synthesis, utilization and/or degradation of cofactors, vitamins and other nutrients. Cofactors are necessary for the proper function of certain proteins and enzymes; they can be inorganic such as the metal ions or the iron-sulfur cluster or organic. Organic compounds that are tightly bound to proteins are also referred to as prosthetic groups. Often, they are or are made from vitamins, compounds that are vital but in small amounts and which are insufficiently synthesized by the organism. Some of these molecules can also perform signaling functions.
Synonyms:related_synonym: Metabolism of vitamins and cofactors

GViewer not supported for the selected species.

show annotations for term's descendants           Sort by:
ADP-ribosylation pathway, cyclic ribosylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bst1 bone marrow stromal cell antigen 1 ISO RGD PMID:23576305 RGD:11250406 NCBI chrNW_004955480:8,273,887...8,304,127
Ensembl chrNW_004955480:8,271,165...8,304,548 		JBrowse link
G Cd38 CD38 molecule ISO RGD PMID:23576305 RGD:11250406 NCBI chrNW_004955480:8,177,178...8,218,483
Ensembl chrNW_004955480:8,178,473...8,217,643 		JBrowse link
ADP-ribosylation pathway, mono and poly-ribosylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aplf aprataxin and PNKP like factor ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004955424:16,338,546...16,449,074
Ensembl chrNW_004955424:16,336,228...16,448,766 		JBrowse link
G Chfr checkpoint with forkhead and ring finger domains ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004955482:233,485...267,064
Ensembl chrNW_004955482:233,486...267,064 		JBrowse link
G Macrod1 mono-ADP ribosylhydrolase 1 ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004955422:20,906,406...21,046,448
Ensembl chrNW_004955422:20,906,521...21,046,345 		JBrowse link
G Macrod2 mono-ADP ribosylhydrolase 2 ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004955415:23,398,409...25,239,184
Ensembl chrNW_004955415:23,398,776...25,226,450 		JBrowse link
G Oard1 O-acyl-ADP-ribose deacylase 1 ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004955437:7,736,747...7,742,950
Ensembl chrNW_004955437:7,736,747...7,743,176 		JBrowse link
G Parg poly(ADP-ribose) glycohydrolase ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004955556:435,264...539,935
Ensembl chrNW_004955556:435,027...535,941 		JBrowse link
G Parp1 poly(ADP-ribose) polymerase 1 ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004955489:520,875...557,609
Ensembl chrNW_004955489:520,875...557,615 		JBrowse link
G Parp10 poly(ADP-ribose) polymerase family member 10 ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004955454:2,644,718...2,651,962
Ensembl chrNW_004955454:2,645,003...2,651,604 		JBrowse link
G Parp11 poly(ADP-ribose) polymerase family member 11 ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004955413:1,549,572...1,682,395
Ensembl chrNW_004955413:1,615,304...1,682,410 		JBrowse link
G Parp12 poly(ADP-ribose) polymerase family member 12 ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004955494:3,126,451...3,158,550
Ensembl chrNW_004955494:3,126,454...3,157,904 		JBrowse link
G Parp14 poly(ADP-ribose) polymerase family member 14 ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004955427:21,878,980...21,929,097
Ensembl chrNW_004955427:21,879,740...21,927,883 		JBrowse link
G Parp16 poly(ADP-ribose) polymerase family member 16 ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004955450:10,157,731...10,177,939
Ensembl chrNW_004955450:10,157,731...10,178,803 		JBrowse link
G Parp2 poly(ADP-ribose) polymerase 2 ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004955550:1,138,976...1,152,293
Ensembl chrNW_004955550:1,140,460...1,151,491 		JBrowse link
G Parp3 poly(ADP-ribose) polymerase family member 3 ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004955532:3,591,484...3,597,549
Ensembl chrNW_004955532:3,591,499...3,597,549 		JBrowse link
G Parp4 poly(ADP-ribose) polymerase family member 4 ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004955425:20,957,032...21,047,971 JBrowse link
G Parp6 poly(ADP-ribose) polymerase family member 6 ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004955450:4,863,713...4,900,509
Ensembl chrNW_004955450:4,863,564...4,901,847 		JBrowse link
G Parp8 poly(ADP-ribose) polymerase family member 8 ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004955446:16,332,614...16,516,719
Ensembl chrNW_004955446:16,332,893...16,516,717 		JBrowse link
G Parp9 poly(ADP-ribose) polymerase family member 9 ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004955427:21,770,158...21,806,091
Ensembl chrNW_004955427:21,770,577...21,804,717 		JBrowse link
G Rnf146 ring finger protein 146 ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004955436:8,312,096...8,331,648 JBrowse link
G Tiparp TCDD inducible poly(ADP-ribose) polymerase ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004955448:7,687,668...7,716,481
Ensembl chrNW_004955448:7,687,668...7,716,707 		JBrowse link
G Tnks tankyrase ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004955463:5,589,194...5,770,141
Ensembl chrNW_004955463:5,588,423...5,764,581 		JBrowse link
G Tnks2 tankyrase 2 ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004955425:1,419,013...1,492,267
Ensembl chrNW_004955425:1,417,679...1,492,267 		JBrowse link
G Zc3hav1 zinc finger CCCH-type containing, antiviral 1 ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004955494:3,925,478...3,985,469
Ensembl chrNW_004955494:3,926,413...3,983,736 		JBrowse link
altered folate cycle metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1l1 aldehyde dehydrogenase 1 family member L1 ISO RGD PMID:22353665 RGD:7242562 NCBI chrNW_004955421:21,420,264...21,506,004
Ensembl chrNW_004955421:21,420,147...21,527,037 		JBrowse link
G Dhfr dihydrofolate reductase ISO RGD PMID:22108709 RGD:7242557 NCBI chrNW_004955418:29,274,170...29,283,028 JBrowse link
G Folr1 folate receptor alpha ISO RGD PMID:22108709 RGD:7242557 NCBI chrNW_004955414:19,188,830...19,197,728
Ensembl chrNW_004955414:19,187,388...19,197,728 		JBrowse link
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 ISO RGD PMID:22108709 RGD:7242557 NCBI chrNW_004955466:5,422,141...5,485,773
Ensembl chrNW_004955466:5,420,702...5,485,773 		JBrowse link
G Mthfr methylenetetrahydrofolate reductase ISO RGD PMID:22108709 RGD:7242557 NCBI chrNW_004955486:2,096,379...2,112,240
Ensembl chrNW_004955486:2,096,379...2,112,240 		JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase ISO RGD PMID:22108709 RGD:7242557 NCBI chrNW_004955492:3,372,915...3,474,173
Ensembl chrNW_004955492:3,376,512...3,474,180 		JBrowse link
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase ISO RGD PMID:22108709 RGD:7242557 NCBI chrNW_004955504:5,412,290...5,435,409
Ensembl chrNW_004955504:5,413,586...5,435,645 		JBrowse link
G Slc46a1 solute carrier family 46 member 1 ISO RGD PMID:22108709 RGD:7242557 NCBI chrNW_004955481:4,735,325...4,741,810
Ensembl chrNW_004955481:4,734,967...4,745,586 		JBrowse link
altered folate mediated one-carbon metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 ISO RGD PMID:22353665 RGD:7242562 NCBI chrNW_004955466:5,422,141...5,485,773
Ensembl chrNW_004955466:5,420,702...5,485,773 		JBrowse link
G Mthfr methylenetetrahydrofolate reductase ISO RGD PMID:22353665 RGD:7242562 NCBI chrNW_004955486:2,096,379...2,112,240
Ensembl chrNW_004955486:2,096,379...2,112,240 		JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase ISO RGD PMID:22353665 RGD:7242562 NCBI chrNW_004955492:3,372,915...3,474,173
Ensembl chrNW_004955492:3,376,512...3,474,180 		JBrowse link
altered retinoid cycle metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca4 ATP binding cassette subfamily A member 4 ISO RGD PMID:20212494 RGD:8547536 NCBI chrNW_004955423:612,098...738,702
Ensembl chrNW_004955423:612,098...736,035 		JBrowse link
G Lrat lecithin retinol acyltransferase ISO RGD PMID:20212494 RGD:8547536 NCBI chrNW_004955471:2,603,395...2,610,988
Ensembl chrNW_004955471:2,603,678...2,609,079 		JBrowse link
G Rbp3 retinol binding protein 3 ISO RGD PMID:20212494 RGD:8547536 NCBI chrNW_004955556:2,217,528...2,225,369
Ensembl chrNW_004955556:2,217,440...2,225,501 		JBrowse link
G Rdh12 retinol dehydrogenase 12 ISO RGD PMID:20212494 RGD:8547536 NCBI chrNW_004955466:2,473,145...2,485,779
Ensembl chrNW_004955466:2,473,096...2,487,623 		JBrowse link
G Rlbp1 retinaldehyde binding protein 1 ISO RGD PMID:20212494 RGD:8547536 NCBI chrNW_004955416:15,862,510...15,873,261
Ensembl chrNW_004955416:15,862,426...15,873,327 		JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 ISO RGD PMID:20212494 RGD:8547536 NCBI chrNW_004955423:23,184,326...23,208,206
Ensembl chrNW_004955423:23,183,937...23,208,282 		JBrowse link
biotin metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Btd biotinidase ISO SMPDB SMP:00066 NCBI chrNW_004955430:7,960,036...7,988,754
Ensembl chrNW_004955430:7,960,039...7,988,754 		JBrowse link
G Hlcs holocarboxylase synthetase ISO SMPDB SMP:00066 NCBI chrNW_004955407:35,870,820...36,062,066
Ensembl chrNW_004955407:35,873,826...36,074,868 		JBrowse link
G Spcs1 signal peptidase complex subunit 1 ISO SMPDB SMP:00066 NCBI chrNW_004955430:2,689,927...2,692,119
Ensembl chrNW_004955430:2,689,927...2,692,119 		JBrowse link
cytosolic iron-sulfur cluster protein assembly pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ciao1 cytosolic iron-sulfur assembly component 1 ISO RGD PMID:25245479 PMID:25583461 RGD:11554190 RGD:11554192 NCBI chrNW_004955470:3,822,606...3,828,563
Ensembl chrNW_004955470:3,822,582...3,828,563 		JBrowse link
G Ciao2a cytosolic iron-sulfur assembly component 2A ISO RGD PMID:25245479 PMID:25583461 RGD:11554190 RGD:11554192 NCBI chrNW_004955450:11,306,099...11,327,688
Ensembl chrNW_004955450:11,306,099...11,331,758 		JBrowse link
G Ciao2b cytosolic iron-sulfur assembly component 2B ISO RGD PMID:25245479 PMID:25583461 RGD:11554190 RGD:11554192 NCBI chrNW_004955433:23,435,373...23,437,383 JBrowse link
G Ciao3 cytosolic iron-sulfur assembly component 3 ISO RGD PMID:25245479 PMID:25583461 RGD:11554190 RGD:11554192 NCBI chrNW_004955442:16,465,759...16,475,110
Ensembl chrNW_004955442:16,465,178...16,475,110 		JBrowse link
G Ciapin1 cytokine induced apoptosis inhibitor 1 ISO RGD PMID:25245479 PMID:25583461 RGD:11554190 RGD:11554192 NCBI chrNW_004955433:15,065,031...15,081,392
Ensembl chrNW_004955433:15,065,031...15,081,293 		JBrowse link
G Mms19 MMS19 homolog, cytosolic iron-sulfur assembly component ISO RGD PMID:25245479 PMID:25583461 RGD:11554190 RGD:11554192 NCBI chrNW_004955507:3,593,413...3,623,781
Ensembl chrNW_004955507:3,593,413...3,623,781 		JBrowse link
G Ndor1 NADPH dependent diflavin oxidoreductase 1 ISO RGD PMID:25245479 PMID:25583461 RGD:11554190 RGD:11554192 NCBI chrNW_004955513:5,208,040...5,216,618
Ensembl chrNW_004955513:5,208,151...5,216,182 		JBrowse link
G Nubp1 NUBP iron-sulfur cluster assembly factor 1, cytosolic ISO RGD PMID:25245479 PMID:25583461 RGD:11554190 RGD:11554192 NCBI chrNW_004955442:7,717,422...7,732,496
Ensembl chrNW_004955442:7,717,422...7,732,496 		JBrowse link
G Nubp2 NUBP iron-sulfur cluster assembly factor 2, cytosolic ISO RGD PMID:25245479 PMID:25583461 RGD:11554190 RGD:11554192 NCBI chrNW_004955442:15,482,916...15,486,830
Ensembl chrNW_004955442:15,483,549...15,486,741 		JBrowse link
de novo nicotinamide adenine dinucleotide biosynthetic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nadsyn1 NAD synthetase 1 ISO RGD PMID:20007326 RGD:11099972 NCBI chrNW_004955422:15,067,711...15,113,942
Ensembl chrNW_004955422:15,066,708...15,114,049 		JBrowse link
G Nmnat1 nicotinamide nucleotide adenylyltransferase 1 ISO RGD PMID:20007326 RGD:11099972 NCBI chrNW_004955486:3,637,794...3,655,744
Ensembl chrNW_004955486:3,637,794...3,655,598 		JBrowse link
G Nmnat2 nicotinamide nucleotide adenylyltransferase 2 ISO RGD PMID:20007326 RGD:11099972 NCBI chrNW_004955406:22,077,247...22,274,668
Ensembl chrNW_004955406:22,076,343...22,227,200 		JBrowse link
G Nmnat3 nicotinamide nucleotide adenylyltransferase 3 ISO RGD PMID:20007326 RGD:11099972 NCBI chrNW_004955508:5,909,808...6,024,301
Ensembl chrNW_004955508:5,913,898...6,022,128 		JBrowse link
G Qprt quinolinate phosphoribosyltransferase ISO RGD PMID:20007326 RGD:11099972 NCBI chrNW_004955493:7,225,472...7,243,078
Ensembl chrNW_004955493:7,224,983...7,242,852 		JBrowse link
folate cycle metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1l1 aldehyde dehydrogenase 1 family member L1 ISO RGD PMID:22353665 RGD:7242562 NCBI chrNW_004955421:21,420,264...21,506,004
Ensembl chrNW_004955421:21,420,147...21,527,037 		JBrowse link
G Amt aminomethyltransferase ISO RGD PMID:20645850 RGD:7242560 NCBI chrNW_004955532:1,351,743...1,358,220
Ensembl chrNW_004955532:1,351,743...1,358,220 		JBrowse link
G Dhfr dihydrofolate reductase ISO RGD PMID:22108709 RGD:7242557 NCBI chrNW_004955418:29,274,170...29,283,028 JBrowse link
G Dld dihydrolipoamide dehydrogenase ISO RGD PMID:20645850 RGD:7242560 NCBI chrNW_004955410:12,212,981...12,238,561
Ensembl chrNW_004955410:12,212,963...12,238,561 		JBrowse link
G Dmgdh dimethylglycine dehydrogenase ISO RGD PMID:20645850 RGD:7242560 NCBI chrNW_004955425:22,045,977...22,103,381
Ensembl chrNW_004955425:22,045,993...22,102,852 		JBrowse link
G Folr1 folate receptor alpha ISO RGD PMID:22108709 RGD:7242557 NCBI chrNW_004955414:19,188,830...19,197,728
Ensembl chrNW_004955414:19,187,388...19,197,728 		JBrowse link
G Fpgs folylpolyglutamate synthase ISO RGD PMID:16859665 RGD:7242559 NCBI chrNW_004955419:853,891...871,729
Ensembl chrNW_004955419:851,152...871,522 		JBrowse link
G Gcsh glycine cleavage system protein H ISO RGD PMID:20645850 RGD:7242560 NCBI chrNW_004955522:3,858,156...3,869,730
Ensembl chrNW_004955522:3,857,628...3,870,228 		JBrowse link
G Ggh gamma-glutamyl hydrolase ISO RGD PMID:16859665 RGD:7242559 NCBI chrNW_004955444:15,901,225...15,930,358
Ensembl chrNW_004955444:15,900,485...15,931,338 		JBrowse link
G Gldc glycine decarboxylase ISO RGD PMID:20645850 RGD:7242560 NCBI chrNW_004955434:10,431,434...10,533,118
Ensembl chrNW_004955434:10,431,983...10,533,002 		JBrowse link
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 ISO RGD PMID:22108709 RGD:7242557 NCBI chrNW_004955466:5,422,141...5,485,773
Ensembl chrNW_004955466:5,420,702...5,485,773 		JBrowse link
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like ISO RGD PMID:22108709 RGD:7242557 NCBI chrNW_004955439:10,432,732...10,621,991
Ensembl chrNW_004955439:10,438,883...10,621,768 		JBrowse link
G Mthfd2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase ISO RGD PMID:20645850 PMID:22108709 RGD:7242557 RGD:7242560 NCBI chrNW_004955424:11,538,344...11,550,119
Ensembl chrNW_004955424:11,539,399...11,550,220 		JBrowse link
G Mthfd2l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like ISO RGD PMID:22108709 RGD:7242557 NCBI chrNW_004955474:450,676...558,659
Ensembl chrNW_004955474:450,680...558,716 		JBrowse link
G Mthfr methylenetetrahydrofolate reductase ISO RGD PMID:22108709 RGD:7242557 NCBI chrNW_004955486:2,096,379...2,112,240
Ensembl chrNW_004955486:2,096,379...2,112,240 		JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase ISO RGD PMID:22108709 RGD:7242557 NCBI chrNW_004955492:3,372,915...3,474,173
Ensembl chrNW_004955492:3,376,512...3,474,180 		JBrowse link
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase ISO RGD PMID:22108709 RGD:7242557 NCBI chrNW_004955504:5,412,290...5,435,409
Ensembl chrNW_004955504:5,413,586...5,435,645 		JBrowse link
G Sardh sarcosine dehydrogenase ISO RGD PMID:20645850 RGD:7242560 NCBI chrNW_004955513:2,933,918...2,975,645
Ensembl chrNW_004955513:2,933,918...2,976,931 		JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 ISO RGD PMID:22108709 RGD:7242557 NCBI chrNW_004955478:10,972,791...11,001,535
Ensembl chrNW_004955478:10,978,139...11,001,202 		JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 ISO RGD PMID:20645850 PMID:22108709 RGD:7242557 RGD:7242560 NCBI chrNW_004955458:4,957,614...4,962,691
Ensembl chrNW_004955458:4,957,602...4,962,691 		JBrowse link
G Slc19a1 solute carrier family 19 member 1 ISO RGD PMID:20814827 PMID:22108709 RGD:7242426 RGD:7242557 NCBI chrNW_004955407:42,132,216...42,154,252
Ensembl chrNW_004955407:42,132,165...42,141,992 		JBrowse link
G Slc25a32 solute carrier family 25 member 32 ISO RGD PMID:22332074 RGD:7242561 NCBI chrNW_004955417:27,530,806...27,545,103
Ensembl chrNW_004955417:27,527,144...27,546,043 		JBrowse link
G Slc46a1 solute carrier family 46 member 1 ISO RGD PMID:20814827 PMID:22108709 RGD:7242426 RGD:7242557 NCBI chrNW_004955481:4,735,325...4,741,810
Ensembl chrNW_004955481:4,734,967...4,745,586 		JBrowse link
folate mediated one-carbon metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1l1 aldehyde dehydrogenase 1 family member L1 ISO RGD PMID:14729668 RGD:1547843 NCBI chrNW_004955421:21,420,264...21,506,004
Ensembl chrNW_004955421:21,420,147...21,527,037 		JBrowse link
G Atic 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase ISO RGD PMID:9332377 PMID:22332074 RGD:70804 RGD:7242561 NCBI chrNW_004955457:704,213...729,702
Ensembl chrNW_004955457:704,213...730,134 		JBrowse link
G Dhfr dihydrofolate reductase ISO RGD PMID:11502523 PMID:22332074 RGD:1298877 RGD:7242561 NCBI chrNW_004955418:29,274,170...29,283,028 JBrowse link
G Dmgdh dimethylglycine dehydrogenase ISO RGD PMID:15358367 RGD:1547831 NCBI chrNW_004955425:22,045,977...22,103,381
Ensembl chrNW_004955425:22,045,993...22,102,852 		JBrowse link
G Gart phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase ISO RGD PMID:12450384 PMID:22332074 RGD:1547842 RGD:7242561 NCBI chrNW_004955407:32,944,638...32,975,142
Ensembl chrNW_004955407:32,944,164...32,973,863 		JBrowse link
G Gnmt glycine N-methyltransferase ISO RGD PMID:8278367 RGD:1545057 NCBI chrNW_004955437:8,944,288...8,946,642
Ensembl chrNW_004955437:8,944,047...8,946,642 		JBrowse link
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 ISO RGD PMID:2186031 PMID:22332074 RGD:1299513 RGD:7242561 NCBI chrNW_004955466:5,422,141...5,485,773
Ensembl chrNW_004955466:5,420,702...5,485,773 		JBrowse link
G Mthfd2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase ISO RGD PMID:9454603 RGD:1540378 NCBI chrNW_004955424:11,538,344...11,550,119
Ensembl chrNW_004955424:11,539,399...11,550,220 		JBrowse link
G Mthfr methylenetetrahydrofolate reductase ISO RGD PMID:11933257 PMID:22332074 RGD:1535021 RGD:7242561 NCBI chrNW_004955486:2,096,379...2,112,240
Ensembl chrNW_004955486:2,096,379...2,112,240 		JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase ISO RGD PMID:15845641 PMID:20814827 RGD:1359026 RGD:7242426 NCBI chrNW_004955492:3,372,915...3,474,173
Ensembl chrNW_004955492:3,376,512...3,474,180 		JBrowse link
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase ISO RGD PMID:20814827 RGD:7242426 NCBI chrNW_004955504:5,412,290...5,435,409
Ensembl chrNW_004955504:5,413,586...5,435,645 		JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 ISO RGD PMID:3110140 PMID:15671219 PMID:22332074 RGD:1359815 RGD:2300383 RGD:7242561 NCBI chrNW_004955478:10,972,791...11,001,535
Ensembl chrNW_004955478:10,978,139...11,001,202 		JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 ISO RGD PMID:3110140 PMID:15671219 PMID:22332074 RGD:1359815 RGD:2300383 RGD:7242561 NCBI chrNW_004955458:4,957,614...4,962,691
Ensembl chrNW_004955458:4,957,602...4,962,691 		JBrowse link
G Tyms thymidylate synthetase ISO RGD PMID:9894005 PMID:22332074 RGD:1545055 RGD:7242561 NCBI chrNW_004955402:9,295,862...9,304,952
Ensembl chrNW_004955402:9,296,321...9,306,631 		JBrowse link
folate metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1l1 aldehyde dehydrogenase 1 family member L1 ISO SMPDB
RGD		 PMID:14729668 RGD:1547843 SMP:00053 NCBI chrNW_004955421:21,420,264...21,506,004
Ensembl chrNW_004955421:21,420,147...21,527,037 		JBrowse link
G Dhfr dihydrofolate reductase ISO SMPDB
RGD		 PMID:11502523 RGD:1298877 SMP:00053 NCBI chrNW_004955418:29,274,170...29,283,028 JBrowse link
G Dmgdh dimethylglycine dehydrogenase ISO RGD PMID:15358367 RGD:1547831 NCBI chrNW_004955425:22,045,977...22,103,381
Ensembl chrNW_004955425:22,045,993...22,102,852 		JBrowse link
G Fpgs folylpolyglutamate synthase ISO SMPDB SMP:00053 NCBI chrNW_004955419:853,891...871,729
Ensembl chrNW_004955419:851,152...871,522 		JBrowse link
G Ftcd formimidoyltransferase cyclodeaminase ISO SMPDB SMP:00053 NCBI chrNW_004955407:42,608,249...42,617,167
Ensembl chrNW_004955407:42,607,872...42,617,166 		JBrowse link
G Gart phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase ISO RGD PMID:12450384 RGD:1547842 NCBI chrNW_004955407:32,944,638...32,975,142
Ensembl chrNW_004955407:32,944,164...32,973,863 		JBrowse link
G Ggh gamma-glutamyl hydrolase ISO SMPDB SMP:00053 NCBI chrNW_004955444:15,901,225...15,930,358
Ensembl chrNW_004955444:15,900,485...15,931,338 		JBrowse link
G Gnmt glycine N-methyltransferase ISO RGD PMID:15347642 RGD:1359070 NCBI chrNW_004955437:8,944,288...8,946,642
Ensembl chrNW_004955437:8,944,047...8,946,642 		JBrowse link
G Mtfmt mitochondrial methionyl-tRNA formyltransferase ISO SMPDB SMP:00053 NCBI chrNW_004955450:10,399,472...10,415,813
Ensembl chrNW_004955450:10,399,470...10,415,872 		JBrowse link
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 ISO SMPDB
RGD		 PMID:2186031 RGD:1299513 SMP:00053 NCBI chrNW_004955466:5,422,141...5,485,773
Ensembl chrNW_004955466:5,420,702...5,485,773 		JBrowse link
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like ISO SMPDB SMP:00053 NCBI chrNW_004955439:10,432,732...10,621,991
Ensembl chrNW_004955439:10,438,883...10,621,768 		JBrowse link
G Mthfd2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase ISO SMPDB
RGD		 PMID:9454603 RGD:1540378 SMP:00053 NCBI chrNW_004955424:11,538,344...11,550,119
Ensembl chrNW_004955424:11,539,399...11,550,220 		JBrowse link
G Mthfr methylenetetrahydrofolate reductase ISO SMPDB
RGD		 PMID:11933257 RGD:1535021 SMP:00053 NCBI chrNW_004955486:2,096,379...2,112,240
Ensembl chrNW_004955486:2,096,379...2,112,240 		JBrowse link
G Mthfs methenyltetrahydrofolate synthetase ISO SMPDB SMP:00053 NCBI chrNW_004955533:720,255...756,893
Ensembl chrNW_004955533:720,353...756,893 		JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase ISO RGD PMID:15845641 RGD:1359026 NCBI chrNW_004955492:3,372,915...3,474,173
Ensembl chrNW_004955492:3,376,512...3,474,180 		JBrowse link
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase ISO RGD PMID:15979034 RGD:1359037 NCBI chrNW_004955504:5,412,290...5,435,409
Ensembl chrNW_004955504:5,413,586...5,435,645 		JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 ISO RGD PMID:15671219 RGD:1359815 NCBI chrNW_004955478:10,972,791...11,001,535
Ensembl chrNW_004955478:10,978,139...11,001,202 		JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 ISO RGD PMID:15671219 RGD:1359815 NCBI chrNW_004955458:4,957,614...4,962,691
Ensembl chrNW_004955458:4,957,602...4,962,691 		JBrowse link
G Slc19a1 solute carrier family 19 member 1 ISO RGD PMID:11600421 RGD:735239 NCBI chrNW_004955407:42,132,216...42,154,252
Ensembl chrNW_004955407:42,132,165...42,141,992 		JBrowse link
G Slc46a1 solute carrier family 46 member 1 ISO SMPDB SMP:00053 NCBI chrNW_004955481:4,735,325...4,741,810
Ensembl chrNW_004955481:4,734,967...4,745,586 		JBrowse link
G Tyms thymidylate synthetase ISO RGD PMID:9894005 RGD:1545055 NCBI chrNW_004955402:9,295,862...9,304,952
Ensembl chrNW_004955402:9,296,321...9,306,631 		JBrowse link
glutathione metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anpep alanyl aminopeptidase, membrane ISO SMPDB SMP:00015 NCBI chrNW_004955416:15,415,981...15,442,032
Ensembl chrNW_004955416:15,424,932...15,444,075 		JBrowse link
G Casp7 caspase 7 ISO SMPDB SMP:00015 NCBI chrNW_004955431:18,685,408...18,723,221
Ensembl chrNW_004955431:18,686,190...18,723,524 		JBrowse link
G Gclc glutamate-cysteine ligase catalytic subunit ISO RGD
SMPDB		 PMID:16137247 PMID:16183645 RGD:1582661 RGD:1582663 SMP:00015 NCBI chrNW_004955411:2,593,523...2,617,553
Ensembl chrNW_004955411:2,593,541...2,616,539 		JBrowse link
G Gclm glutamate-cysteine ligase modifier subunit ISO RGD
SMPDB		 PMID:16137247 PMID:16183645 RGD:1582661 RGD:1582663 SMP:00015 NCBI chrNW_004955423:782,468...805,384
Ensembl chrNW_004955423:782,468...805,384 		JBrowse link
G Ggct gamma-glutamylcyclotransferase ISO SMPDB SMP:00015 NCBI chrNW_004955410:31,732,272...31,739,020
Ensembl chrNW_004955410:31,731,312...31,739,020 		JBrowse link
G Ggt6 gamma-glutamyltransferase 6 ISO SMPDB SMP:00015 NCBI chrNW_004955467:12,385,525...12,388,806
Ensembl chrNW_004955467:12,385,394...12,389,521 		JBrowse link
G Gpx1 glutathione peroxidase 1 ISO SMPDB SMP:00015 NCBI chrNW_004955532:1,298,336...1,298,830 JBrowse link
G Gsr glutathione-disulfide reductase ISO SMPDB SMP:00015 NCBI chrNW_004955463:7,130,459...7,153,631
Ensembl chrNW_004955463:7,131,364...7,153,583 		JBrowse link
G Gss glutathione synthetase ISO SMPDB SMP:00015 NCBI chrNW_004955422:26,427,581...26,483,380
Ensembl chrNW_004955422:26,427,581...26,463,781 		JBrowse link
G Oplah 5-oxoprolinase, ATP-hydrolysing ISO SMPDB SMP:00015 NCBI chrNW_004955454:2,707,819...2,735,375
Ensembl chrNW_004955454:2,707,819...2,720,992 		JBrowse link
heme biosynthetic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alad aminolevulinate dehydratase ISO RGD PMID:16839620 PMID:26785297 RGD:11554188 RGD:4144542 NCBI chrNW_004955419:14,093,010...14,104,376
Ensembl chrNW_004955419:14,093,010...14,104,545 		JBrowse link
G Alas1 5'-aminolevulinate synthase 1 ISO RGD PMID:16125296 PMID:16839620 PMID:26785297 RGD:11554188 RGD:1601233 RGD:4144542 NCBI chrNW_004955532:3,810,469...3,823,456
Ensembl chrNW_004955532:3,810,464...3,823,456 		JBrowse link
G Alas2 5'-aminolevulinate synthase 2 ISO RGD PMID:16839620 PMID:26785297 RGD:11554188 RGD:4144542 NCBI chrNW_004955475:2,362,368...2,382,680
Ensembl chrNW_004955475:2,362,118...2,377,864 		JBrowse link
G Cpox coproporphyrinogen oxidase ISO RGD PMID:16839620 PMID:26785297 RGD:11554188 RGD:4144542 NCBI chrNW_004955427:152,397...163,570
Ensembl chrNW_004955427:152,894...164,030 		JBrowse link
G Fech ferrochelatase ISO RGD PMID:16839620 PMID:26785297 RGD:11554188 RGD:4144542 NCBI chrNW_004955402:41,902,868...41,938,099
Ensembl chrNW_004955402:41,902,868...41,938,174 		JBrowse link
G Hmbs hydroxymethylbilane synthase ISO RGD PMID:593266 PMID:1781034 PMID:6694518 PMID:6712591 PMID:6893114 More... RGD:11554188 RGD:2301704 RGD:25330343 RGD:25440495 RGD:26884337 RGD:26923963 RGD:4144542 NCBI chrNW_004955412:20,192,519...20,202,635
Ensembl chrNW_004955412:20,192,522...20,202,635 		JBrowse link
G Ppox protoporphyrinogen oxidase ISO RGD PMID:3663105 PMID:16839620 PMID:26785297 RGD:11554188 RGD:1599180 RGD:4144542 NCBI chrNW_004955468:12,930,387...12,934,437
Ensembl chrNW_004955468:12,930,495...12,934,437 		JBrowse link
G Slc25a38 solute carrier family 25 member 38 ISO RGD PMID:26785297 PMID:27476175 RGD:11554188 RGD:11556278 NCBI chrNW_004955420:29,988,147...29,996,485
Ensembl chrNW_004955420:29,988,147...29,996,486 		JBrowse link
G Tspo translocator protein ISO RGD PMID:26785297 RGD:11554188 NCBI chrNW_004955413:28,309,105...28,315,075
Ensembl chrNW_004955413:28,308,658...28,315,075 		JBrowse link
G Urod uroporphyrinogen decarboxylase ISO RGD PMID:10416273 PMID:16839620 PMID:26785297 RGD:11554188 RGD:2303399 RGD:4144542 NCBI chrNW_004955464:13,226,271...13,228,908
Ensembl chrNW_004955464:13,221,551...13,229,253 		JBrowse link
G Uros uroporphyrinogen III synthase ISO RGD PMID:3327431 PMID:16839620 PMID:26785297 RGD:11554188 RGD:4144542 RGD:4144823 NCBI chrNW_004955477:3,673,583...3,707,761
Ensembl chrNW_004955477:3,673,532...3,707,760 		JBrowse link
heme degradation pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmox1 heme oxygenase 1 ISO RGD PMID:15226268 RGD:1547877 NCBI chrNW_004955405:43,124,447...43,128,873
Ensembl chrNW_004955405:43,124,510...43,130,979 		JBrowse link
mitochondrial iron-sulfur cluster export pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb7 ATP binding cassette subfamily B member 7 ISO RGD PMID:25245479 RGD:11554190 NCBI chrNW_004955562:1,079,884...1,220,806
Ensembl chrNW_004955562:1,077,198...1,221,061 		JBrowse link
G Gfer growth factor, augmenter of liver regeneration ISO RGD PMID:25245479 RGD:11554190 NCBI chrNW_004955442:15,280,753...15,283,405
Ensembl chrNW_004955442:15,281,419...15,283,266 		JBrowse link
mitochondrial iron-sulfur cluster protein biogenesis pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bola3 bolA family member 3 ISO RGD PMID:25245479 RGD:11554190 NCBI chrNW_004955424:11,583,508...11,590,626
Ensembl chrNW_004955424:11,583,370...11,590,947 		JBrowse link
G Fdx1 ferredoxin 1 ISO RGD PMID:25245479 RGD:11554190 NCBI chrNW_004955412:12,280,900...12,312,930
Ensembl chrNW_004955412:12,286,408...12,316,707 		JBrowse link
G Fdx2 ferredoxin 2 ISO RGD PMID:25245479 RGD:11554190 NCBI chrNW_004955495:1,590,493...1,594,760
Ensembl chrNW_004955495:1,590,493...1,594,760 		JBrowse link
G Fdxr ferredoxin reductase ISO RGD PMID:25245479 RGD:11554190 NCBI chrNW_004955553:1,746,759...1,755,316
Ensembl chrNW_004955553:1,746,670...1,755,315 		JBrowse link
G Glrx5 glutaredoxin 5 ISO RGD PMID:25245479 RGD:11554190 NCBI chrNW_004955438:17,067,017...17,076,162
Ensembl chrNW_004955438:17,066,955...17,075,789 		JBrowse link
G Hscb HscB mitochondrial iron-sulfur cluster cochaperone ISO RGD PMID:25245479 RGD:11554190 NCBI chrNW_004955455:3,005,617...3,013,393 JBrowse link
G Hspa9 heat shock protein family A (Hsp70) member 9 ISO RGD PMID:25245479 RGD:11554190 NCBI chrNW_004955418:1,915,985...1,931,017
Ensembl chrNW_004955418:1,915,985...1,931,017 		JBrowse link
G Iba57 iron-sulfur cluster assembly factor IBA57 ISO RGD PMID:25245479 RGD:11554190 NCBI chrNW_004955581:284,488...289,225
Ensembl chrNW_004955581:286,121...289,139 		JBrowse link
G Isca1 iron-sulfur cluster assembly 1 ISO RGD PMID:25245479 RGD:11554190 NCBI chrNW_004955432:1,335,481...1,349,852
Ensembl chrNW_004955432:1,335,481...1,349,847 		JBrowse link
G Isca2 iron-sulfur cluster assembly 2 ISO RGD PMID:25245479 RGD:11554190 NCBI chrNW_004955523:1,008,246...1,010,030
Ensembl chrNW_004955523:1,008,246...1,010,041 		JBrowse link
G Iscu iron-sulfur cluster assembly enzyme ISO RGD PMID:25245479 RGD:11554190 NCBI chrNW_004955455:9,833,924...9,840,547
Ensembl chrNW_004955455:9,833,924...9,841,619 		JBrowse link
G Lyrm4 LYR motif containing 4 ISO RGD PMID:25245479 RGD:11554190 NCBI chrNW_004955465:8,346,012...8,470,251 JBrowse link
G Nfs1 NFS1 cysteine desulfurase ISO RGD PMID:25245479 RGD:11554190 NCBI chrNW_004955422:25,759,988...25,785,560
Ensembl chrNW_004955422:25,760,099...25,785,108 		JBrowse link
G Nfu1 NFU1 iron-sulfur cluster scaffold ISO RGD PMID:25245479 RGD:11554190 NCBI chrNW_004955424:15,648,213...15,671,383
Ensembl chrNW_004955424:15,647,623...15,674,573 		JBrowse link
G Nubpl NUBP iron-sulfur cluster assembly factor, mitochondrial ISO RGD PMID:25245479 RGD:11554190 NCBI chrNW_004955409:28,873,609...29,073,196
Ensembl chrNW_004955409:28,872,189...29,073,206 		JBrowse link
molybdenum cofactor biosynthetic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gphn gephyrin ISO RGD PMID:16784786 RGD:1625104 NCBI chrNW_004955466:3,017,474...3,526,375
Ensembl chrNW_004955466:3,016,479...3,526,231 		JBrowse link
G Mocs1 molybdenum cofactor synthesis 1 ISO RGD PMID:16784786 RGD:1625104 NCBI chrNW_004955437:6,840,451...6,870,685
Ensembl chrNW_004955437:6,840,451...6,870,685 		JBrowse link
G Mocs2 molybdenum cofactor synthesis 2 ISO RGD PMID:16784786 RGD:1625104 NCBI chrNW_004955446:14,295,737...14,305,735
Ensembl chrNW_004955446:14,295,737...14,307,838 		JBrowse link
G Mocs3 molybdenum cofactor synthesis 3 ISO RGD PMID:16784786 RGD:1625104 NCBI chrNW_004955445:7,470,030...7,472,323
Ensembl chrNW_004955445:7,470,888...7,472,267 		JBrowse link
niacin metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aox1 aldehyde oxidase 1 ISO SMPDB SMP:00048 NCBI chrNW_004955403:827,538...875,856
Ensembl chrNW_004955403:828,066...872,218 		JBrowse link
G Bst1 bone marrow stromal cell antigen 1 ISO SMPDB SMP:00048 NCBI chrNW_004955480:8,273,887...8,304,127
Ensembl chrNW_004955480:8,271,165...8,304,548 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 ISO SMPDB SMP:00048 NCBI chrNW_004955436:12,416,147...12,477,214
Ensembl chrNW_004955436:12,415,737...12,480,359 		JBrowse link
G Nadk NAD kinase ISO SMPDB SMP:00048 NCBI chrNW_004955486:9,191,923...9,217,547
Ensembl chrNW_004955486:9,191,923...9,217,538 		JBrowse link
G Nadsyn1 NAD synthetase 1 ISO SMPDB SMP:00048 NCBI chrNW_004955422:15,067,711...15,113,942
Ensembl chrNW_004955422:15,066,708...15,114,049 		JBrowse link
G Nampt nicotinamide phosphoribosyltransferase ISO SMPDB SMP:00048 NCBI chrNW_004955410:10,717,664...10,742,109
Ensembl chrNW_004955410:10,717,664...10,751,177 		JBrowse link
G Nmnat2 nicotinamide nucleotide adenylyltransferase 2 ISO SMPDB SMP:00048 NCBI chrNW_004955406:22,077,247...22,274,668
Ensembl chrNW_004955406:22,076,343...22,227,200 		JBrowse link
G Nmrk1 nicotinamide riboside kinase 1 ISO SMPDB SMP:00048 NCBI chrNW_004955512:3,990,706...4,043,334
Ensembl chrNW_004955512:3,994,486...4,013,227 		JBrowse link
G Nnmt nicotinamide N-methyltransferase ISO SMPDB SMP:00048 NCBI chrNW_004955412:15,892,906...15,916,166 JBrowse link
G Nnt nicotinamide nucleotide transhydrogenase ISO SMPDB SMP:00048 NCBI chrNW_004955446:18,685,511...18,778,024
Ensembl chrNW_004955446:18,685,516...18,778,024 		JBrowse link
G Nt5c2 5'-nucleotidase, cytosolic II ISO SMPDB SMP:00048 NCBI chrNW_004955485:7,318,006...7,394,448
Ensembl chrNW_004955485:7,317,588...7,394,448 		JBrowse link
G Nudt12 nudix hydrolase 12 ISO SMPDB SMP:00048 NCBI chrNW_004955418:10,459,644...10,474,124
Ensembl chrNW_004955418:10,459,638...10,474,124 		JBrowse link
G Pnp purine nucleoside phosphorylase ISO SMPDB SMP:00048 NCBI chrNW_004955550:1,290,816...1,299,553
Ensembl chrNW_004955550:1,290,244...1,298,068 		JBrowse link
G Qprt quinolinate phosphoribosyltransferase ISO SMPDB SMP:00048 NCBI chrNW_004955493:7,225,472...7,243,078
Ensembl chrNW_004955493:7,224,983...7,242,852 		JBrowse link
nicotinamide adenine dinucleotide biosynthesis, the salvage pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nadsyn1 NAD synthetase 1 ISO RGD PMID:20007326 RGD:11099972 NCBI chrNW_004955422:15,067,711...15,113,942
Ensembl chrNW_004955422:15,066,708...15,114,049 		JBrowse link
G Nampt nicotinamide phosphoribosyltransferase ISO RGD PMID:20007326 RGD:11099972 NCBI chrNW_004955410:10,717,664...10,742,109
Ensembl chrNW_004955410:10,717,664...10,751,177 		JBrowse link
G Naprt nicotinate phosphoribosyltransferase ISO RGD PMID:20007326 RGD:11099972 NCBI chrNW_004955454:2,280,223...2,283,613
Ensembl chrNW_004955454:2,280,223...2,283,613 		JBrowse link
G Nmnat1 nicotinamide nucleotide adenylyltransferase 1 ISO RGD PMID:20007326 RGD:11099972 NCBI chrNW_004955486:3,637,794...3,655,744
Ensembl chrNW_004955486:3,637,794...3,655,598 		JBrowse link
G Nmnat2 nicotinamide nucleotide adenylyltransferase 2 ISO RGD PMID:20007326 RGD:11099972 NCBI chrNW_004955406:22,077,247...22,274,668
Ensembl chrNW_004955406:22,076,343...22,227,200 		JBrowse link
G Nmnat3 nicotinamide nucleotide adenylyltransferase 3 ISO RGD PMID:20007326 RGD:11099972 NCBI chrNW_004955508:5,909,808...6,024,301
Ensembl chrNW_004955508:5,913,898...6,022,128 		JBrowse link
G Nmrk1 nicotinamide riboside kinase 1 ISO RGD PMID:20007326 RGD:11099972 NCBI chrNW_004955512:3,990,706...4,043,334
Ensembl chrNW_004955512:3,994,486...4,013,227 		JBrowse link
G Nmrk2 nicotinamide riboside kinase 2 ISO RGD PMID:20007326 RGD:11099972 NCBI chrNW_004955495:5,749,303...5,754,889
Ensembl chrNW_004955495:5,749,309...5,756,367 		JBrowse link
nicotinamide adenine dinucleotide metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gapdh glyceraldehyde-3-phosphate dehydrogenase ISO SMPDB SMP:00124 NCBI chrNW_004955413:4,162,467...4,166,783
Ensembl chrNW_004955413:4,162,467...4,166,783 		JBrowse link
G Got1 glutamic-oxaloacetic transaminase 1 ISO RGD PMID:16368075 PMID:18020963 RGD:11251688 RGD:5129954 NCBI chrNW_004955507:5,346,937...5,370,072
Ensembl chrNW_004955507:5,346,838...5,370,072 		JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 ISO SMPDB
RGD		 PMID:16368075 PMID:18020963 RGD:11251688 RGD:5129954 SMP:00129 NCBI chrNW_004955433:16,121,795...16,145,129
Ensembl chrNW_004955433:16,122,824...16,145,113 		JBrowse link
G Gpd1 glycerol-3-phosphate dehydrogenase 1 ISO SMPDB
RGD		 PMID:16368075 PMID:18020963 RGD:11251688 RGD:5129954 SMP:00124 NCBI chrNW_004955547:676,661...683,906
Ensembl chrNW_004955547:676,342...690,777 		JBrowse link
G Gpd2 glycerol-3-phosphate dehydrogenase 2 ISO SMPDB
RGD		 PMID:16368075 PMID:18020963 RGD:11251688 RGD:5129954 SMP:00124 NCBI chrNW_004955449:16,695,855...16,804,184
Ensembl chrNW_004955449:16,695,435...16,802,908 		JBrowse link
G Mdh1 malate dehydrogenase 1 ISO RGD PMID:16368075 PMID:18020963 RGD:11251688 RGD:5129954 NCBI chrNW_004955424:20,707,765...20,723,493
Ensembl chrNW_004955424:20,706,058...20,723,493 		JBrowse link
G Mdh2 malate dehydrogenase 2 ISO SMPDB
RGD		 PMID:16368075 PMID:18020963 RGD:11251688 RGD:5129954 SMP:00129 NCBI chrNW_004955456:14,819,406...14,833,547
Ensembl chrNW_004955456:14,819,406...14,837,142 		JBrowse link
G Nadk NAD kinase ISO RGD PMID:25641397 RGD:11250407 NCBI chrNW_004955486:9,191,923...9,217,547
Ensembl chrNW_004955486:9,191,923...9,217,538 		JBrowse link
G Nadk2 NAD kinase 2, mitochondrial ISO RGD PMID:25641397 RGD:11250407 NCBI chrNW_004955426:21,002,849...21,049,187
Ensembl chrNW_004955426:21,004,785...21,049,050 		JBrowse link
G Nnt nicotinamide nucleotide transhydrogenase ISO RGD PMID:20007326 RGD:11099972 NCBI chrNW_004955446:18,685,511...18,778,024
Ensembl chrNW_004955446:18,685,516...18,778,024 		JBrowse link
G Slc1a3 solute carrier family 1 member 3 ISO RGD PMID:16368075 PMID:18020963 RGD:11251688 RGD:5129954 NCBI chrNW_004955426:21,371,985...21,450,749
Ensembl chrNW_004955426:21,371,985...21,451,069 		JBrowse link
G Slc22a13 solute carrier family 22 member 13 ISO RGD PMID:25837229 RGD:11251687 NCBI chrNW_004955421:5,027,568...5,040,000 JBrowse link
G Slc25a11 solute carrier family 25 member 11 ISO SMPDB SMP:00129 NCBI chrNW_004955467:10,349,378...10,352,649
Ensembl chrNW_004955467:10,349,378...10,355,368 		JBrowse link
G Slc25a12 solute carrier family 25 member 12 ISO SMPDB
RGD		 PMID:16368075 PMID:18020963 RGD:11251688 RGD:5129954 SMP:00129 NCBI chrNW_004955449:3,093,603...3,182,513
Ensembl chrNW_004955449:3,093,603...3,186,737 		JBrowse link
G Slc25a13 solute carrier family 25 member 13 ISO RGD PMID:16368075 RGD:11251688 NCBI chrNW_004955432:12,685,253...12,788,307
Ensembl chrNW_004955432:12,684,596...12,826,667 		JBrowse link
G Slc36a4 solute carrier family 36 member 4 ISO RGD PMID:25837229 RGD:11251687 NCBI chrNW_004955414:1,236,179...1,286,680
Ensembl chrNW_004955414:1,236,141...1,285,610 		JBrowse link
G Slc5a8 solute carrier family 5 member 8 ISO RGD PMID:25837229 RGD:11251687 NCBI chrNW_004955405:36,717,579...36,769,074
Ensembl chrNW_004955405:36,725,892...36,769,074 		JBrowse link
G Slc7a5 solute carrier family 7 member 5 ISO RGD PMID:25837229 RGD:11251687 NCBI chrNW_004955541:2,103,437...2,129,668
Ensembl chrNW_004955541:2,103,384...2,130,310 		JBrowse link
pantothenic acid metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Coasy Coenzyme A synthase ISO SMPDB SMP:00027 NCBI chrNW_004955451:16,457,707...16,460,631
Ensembl chrNW_004955451:16,457,707...16,460,631 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 ISO SMPDB SMP:00027 NCBI chrNW_004955436:12,416,147...12,477,214
Ensembl chrNW_004955436:12,415,737...12,480,359 		JBrowse link
G Pank1 pantothenate kinase 1 ISO SMPDB SMP:00027 NCBI chrNW_004955425:3,384,023...3,433,808
Ensembl chrNW_004955425:3,384,200...3,432,431 		JBrowse link
G Ppcdc phosphopantothenoylcysteine decarboxylase ISO SMPDB SMP:00027 NCBI chrNW_004955450:2,971,874...2,985,034
Ensembl chrNW_004955450:2,971,874...2,985,191 		JBrowse link
G Ppcs phosphopantothenoylcysteine synthetase ISO SMPDB SMP:00027 NCBI chrNW_004955537:2,080,865...2,084,199
Ensembl chrNW_004955537:2,080,865...2,085,003 		JBrowse link
G Vnn1 vanin 1 ISO SMPDB SMP:00027 NCBI chrNW_004955436:13,238,307...13,266,800
Ensembl chrNW_004955436:13,238,603...13,259,577 		JBrowse link
porphyrin metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alad aminolevulinate dehydratase ISO SMPDB SMP:00024 NCBI chrNW_004955419:14,093,010...14,104,376
Ensembl chrNW_004955419:14,093,010...14,104,545 		JBrowse link
G Alas1 5'-aminolevulinate synthase 1 ISO SMPDB SMP:00024 NCBI chrNW_004955532:3,810,469...3,823,456
Ensembl chrNW_004955532:3,810,464...3,823,456 		JBrowse link
G Blvra biliverdin reductase A ISO SMPDB SMP:00024 NCBI chrNW_004955460:129,077...167,345
Ensembl chrNW_004955460:125,854...167,506 		JBrowse link
G Cpox coproporphyrinogen oxidase ISO SMPDB SMP:00024 NCBI chrNW_004955427:152,397...163,570
Ensembl chrNW_004955427:152,894...164,030 		JBrowse link
G Fech ferrochelatase ISO SMPDB SMP:00024 NCBI chrNW_004955402:41,902,868...41,938,099
Ensembl chrNW_004955402:41,902,868...41,938,174 		JBrowse link
G Ftmt ferritin mitochondrial ISO SMPDB SMP:00024 NCBI chrNW_004955521:76,591...77,470 JBrowse link
G Gusb glucuronidase beta ISO SMPDB SMP:00024 NCBI chrNW_004955456:8,377,161...8,392,298
Ensembl chrNW_004955456:8,378,654...8,392,252 		JBrowse link
G Hmbs hydroxymethylbilane synthase ISO SMPDB SMP:00024 NCBI chrNW_004955412:20,192,519...20,202,635
Ensembl chrNW_004955412:20,192,522...20,202,635 		JBrowse link
G Hmox1 heme oxygenase 1 ISO SMPDB SMP:00024 NCBI chrNW_004955405:43,124,447...43,128,873
Ensembl chrNW_004955405:43,124,510...43,130,979 		JBrowse link
G LOC102017801 cytochrome c oxidase assembly protein COX15 homolog ISO SMPDB SMP:00024 NCBI chrNW_004955507:5,600,605...5,617,556
Ensembl chrNW_004955507:5,600,605...5,617,556 		JBrowse link
G LOC102022268 protoheme IX farnesyltransferase, mitochondrial ISO SMPDB SMP:00024 NCBI chrNW_004955467:3,294,200...3,415,778
Ensembl chrNW_004955467:3,292,018...3,415,778 		JBrowse link
G Ppox protoporphyrinogen oxidase ISO SMPDB SMP:00024 NCBI chrNW_004955468:12,930,387...12,934,437
Ensembl chrNW_004955468:12,930,495...12,934,437 		JBrowse link
G Urod uroporphyrinogen decarboxylase ISO SMPDB SMP:00024 NCBI chrNW_004955464:13,226,271...13,228,908
Ensembl chrNW_004955464:13,221,551...13,229,253 		JBrowse link
G Uros uroporphyrinogen III synthase ISO SMPDB SMP:00024 NCBI chrNW_004955477:3,673,583...3,707,761
Ensembl chrNW_004955477:3,673,532...3,707,760 		JBrowse link
retinoic acid metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 ISO RGD PMID:15950969 PMID:21138835 PMID:21621639 RGD:6484672 RGD:6771322 RGD:6771354 NCBI chrNW_004955450:16,406,578...16,453,048
Ensembl chrNW_004955450:16,406,436...16,453,180 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family member A3 ISO RGD PMID:15950969 PMID:21138835 PMID:21621639 RGD:6484672 RGD:6771322 RGD:6771354 NCBI chrNW_004955416:27,823,611...27,858,112
Ensembl chrNW_004955416:27,823,611...27,858,173 		JBrowse link
G Crabp1 cellular retinoic acid binding protein 1 ISO RGD PMID:21621639 RGD:6484672 NCBI chrNW_004955450:810,206...817,011
Ensembl chrNW_004955450:810,151...817,059 		JBrowse link
G Crabp2 cellular retinoic acid binding protein 2 ISO RGD PMID:15950969 PMID:21621639 RGD:6484672 RGD:6771322 NCBI chrNW_004955545:2,777,523...2,782,567
Ensembl chrNW_004955545:2,777,474...2,782,567 		JBrowse link
G Dhrs9 dehydrogenase/reductase 9 ISO RGD PMID:15950969 PMID:21138835 PMID:21621639 RGD:6484672 RGD:6771322 RGD:6771354 NCBI chrNW_004955449:5,360,486...5,380,279
Ensembl chrNW_004955449:5,359,617...5,380,267 		JBrowse link
G Fabp5 fatty acid binding protein 5 ISO RGD PMID:21621639 RGD:6484672 NCBI chrNW_004955444:325,515...329,248
Ensembl chrNW_004955444:325,515...331,516 		JBrowse link
G LOC102023166 cytochrome P450 26B1 ISO RGD PMID:21138835 PMID:21621639 RGD:6484672 RGD:6771354 NCBI chrNW_004955424:13,336,189...13,355,368
Ensembl chrNW_004955424:13,336,189...13,355,423 		JBrowse link
G Lrat lecithin retinol acyltransferase ISO RGD PMID:21621639 RGD:6484672 NCBI chrNW_004955471:2,603,395...2,610,988
Ensembl chrNW_004955471:2,603,678...2,609,079 		JBrowse link
G Rbp1 retinol binding protein 1 ISO RGD PMID:15950969 PMID:21621639 RGD:6484672 RGD:6771322 NCBI chrNW_004955508:6,046,738...6,072,202
Ensembl chrNW_004955508:6,046,316...6,072,288 		JBrowse link
G Rbp4 retinol binding protein 4 ISO RGD PMID:21621639 PMID:21782034 RGD:6484671 RGD:6484672 NCBI chrNW_004955507:112,342...120,050
Ensembl chrNW_004955507:108,669...120,584 		JBrowse link
G Rdh10 retinol dehydrogenase 10 ISO RGD PMID:21138835 PMID:21621639 RGD:6484672 RGD:6771354 NCBI chrNW_004955444:6,878,722...6,909,421
Ensembl chrNW_004955444:6,878,722...6,909,421 		JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 ISO RGD PMID:21621639 PMID:21782034 RGD:6484671 RGD:6484672 NCBI chrNW_004955450:3,579,081...3,602,538
Ensembl chrNW_004955450:3,580,662...3,602,600 		JBrowse link
G Ttr transthyretin ISO RGD PMID:21782034 RGD:6484671 NCBI chrNW_004955402:18,921,235...18,927,976
Ensembl chrNW_004955402:18,921,274...18,928,108 		JBrowse link
retinoid cycle metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca4 ATP binding cassette subfamily A member 4 ISO RGD PMID:21447403 RGD:6893650 NCBI chrNW_004955423:612,098...738,702
Ensembl chrNW_004955423:612,098...736,035 		JBrowse link
G Lrat lecithin retinol acyltransferase ISO RGD PMID:21447403 RGD:6893650 NCBI chrNW_004955471:2,603,395...2,610,988
Ensembl chrNW_004955471:2,603,678...2,609,079 		JBrowse link
G Opn1sw opsin 1, short wave sensitive ISO RGD PMID:21704730 RGD:6893536 NCBI chrNW_004955479:9,573,594...9,576,668
Ensembl chrNW_004955479:9,573,594...9,576,668 		JBrowse link
G Rbp1 retinol binding protein 1 ISO RGD PMID:21447403 RGD:6893650 NCBI chrNW_004955508:6,046,738...6,072,202
Ensembl chrNW_004955508:6,046,316...6,072,288 		JBrowse link
G Rbp3 retinol binding protein 3 ISO RGD PMID:21447403 RGD:6893650 NCBI chrNW_004955556:2,217,528...2,225,369
Ensembl chrNW_004955556:2,217,440...2,225,501 		JBrowse link
G Rdh10 retinol dehydrogenase 10 ISO RGD PMID:21447403 RGD:6893650 NCBI chrNW_004955444:6,878,722...6,909,421
Ensembl chrNW_004955444:6,878,722...6,909,421 		JBrowse link
G Rdh11 retinol dehydrogenase 11 ISO RGD PMID:21447403 RGD:6893650 NCBI chrNW_004955466:2,506,641...2,521,506
Ensembl chrNW_004955466:2,508,338...2,520,903 		JBrowse link
G Rdh12 retinol dehydrogenase 12 ISO RGD PMID:21447403 RGD:6893650 NCBI chrNW_004955466:2,473,145...2,485,779
Ensembl chrNW_004955466:2,473,096...2,487,623 		JBrowse link
G Rdh5 retinol dehydrogenase 5 ISO RGD PMID:21447403 RGD:6893650 NCBI chrNW_004955458:3,356,324...3,361,701
Ensembl chrNW_004955458:3,352,012...3,365,080 		JBrowse link
G Rdh8 retinol dehydrogenase 8 ISO RGD PMID:21447403 RGD:6893650 NCBI chrNW_004955495:1,388,385...1,393,209
Ensembl chrNW_004955495:1,388,424...1,392,552 		JBrowse link
G Rho rhodopsin ISO RGD PMID:21704730 RGD:6893536 NCBI chrNW_004955429:17,787,337...17,791,982
Ensembl chrNW_004955429:17,787,337...17,791,982 		JBrowse link
G Rlbp1 retinaldehyde binding protein 1 ISO RGD PMID:20188572 RGD:6903223 NCBI chrNW_004955416:15,862,510...15,873,261
Ensembl chrNW_004955416:15,862,426...15,873,327 		JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 ISO RGD PMID:21447403 PMID:21785167 RGD:6893650 RGD:6893661 NCBI chrNW_004955423:23,184,326...23,208,206
Ensembl chrNW_004955423:23,183,937...23,208,282 		JBrowse link
retinol metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca1 ATP binding cassette subfamily A member 1 ISO RGD PMID:21718801 RGD:6484679 NCBI chrNW_004955419:21,553,863...21,681,626
Ensembl chrNW_004955419:21,553,835...21,681,619 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 ISO RGD
SMPDB		 PMID:12547725 RGD:1576367 SMP:00074 NCBI chrNW_004955450:16,406,578...16,453,048
Ensembl chrNW_004955450:16,406,436...16,453,180 		JBrowse link
G Awat1 acyl-CoA wax alcohol acyltransferase 1 ISO SMPDB SMP:00074 NCBI chrNW_004955475:9,780,080...9,785,675
Ensembl chrNW_004955475:9,780,080...9,789,448 		JBrowse link
G Bco1 beta-carotene oxygenase 1 ISO SMPDB
RGD		 PMID:21569862 PMID:21718801 RGD:6484679 RGD:6903956 SMP:00074 NCBI chrNW_004955522:3,985,515...4,018,116
Ensembl chrNW_004955522:3,985,266...4,018,886 		JBrowse link
G Cd36 CD36 molecule (CD36 blood group) ISO RGD PMID:21718801 RGD:6484679 NCBI chrNW_004955410:5,003,720...5,120,903
Ensembl chrNW_004955410:5,003,668...5,075,313 		JBrowse link
G Dgat1 diacylglycerol O-acyltransferase 1 ISO SMPDB SMP:00074 NCBI chrNW_004955454:2,933,904...2,944,675
Ensembl chrNW_004955454:2,934,152...2,944,492 		JBrowse link
G Dhrs3 dehydrogenase/reductase 3 ISO SMPDB SMP:00074 NCBI chrNW_004955486:1,439,179...1,473,476
Ensembl chrNW_004955486:1,439,179...1,474,130 		JBrowse link
G Dhrs9 dehydrogenase/reductase 9 ISO SMPDB SMP:00074 NCBI chrNW_004955449:5,360,486...5,380,279
Ensembl chrNW_004955449:5,359,617...5,380,267 		JBrowse link
G Dnajb11 DnaJ heat shock protein family (Hsp40) member B11 ISO SMPDB SMP:00074 NCBI chrNW_004955420:21,097,292...21,113,053
Ensembl chrNW_004955420:21,097,941...21,112,792 		JBrowse link
G Erp29 endoplasmic reticulum protein 29 ISO SMPDB SMP:00074 NCBI chrNW_004955482:8,572,227...8,579,589
Ensembl chrNW_004955482:8,572,227...8,579,946 		JBrowse link
G Hsp90b1 heat shock protein 90 beta family member 1 ISO SMPDB SMP:00074 NCBI chrNW_004955405:38,629,691...38,645,202
Ensembl chrNW_004955405:38,629,691...38,645,202 		JBrowse link
G Hspa5 heat shock protein family A (Hsp70) member 5 ISO SMPDB SMP:00074 NCBI chrNW_004955419:3,055,420...3,060,208
Ensembl chrNW_004955419:3,055,420...3,062,131 		JBrowse link
G Hyou1 hypoxia up-regulated 1 ISO SMPDB SMP:00074 NCBI chrNW_004955412:20,149,104...20,161,378
Ensembl chrNW_004955412:20,148,953...20,161,172 		JBrowse link
G Lrat lecithin retinol acyltransferase ISO SMPDB
RGD		 PMID:21718801 RGD:6484679 SMP:00074 NCBI chrNW_004955471:2,603,395...2,610,988
Ensembl chrNW_004955471:2,603,678...2,609,079 		JBrowse link
G Pdia2 protein disulfide isomerase family A member 2 ISO SMPDB SMP:00074 NCBI chrNW_004955442:16,898,563...16,901,867
Ensembl chrNW_004955442:16,898,635...16,901,799 		JBrowse link
G Pdia4 protein disulfide isomerase family A member 4 ISO SMPDB SMP:00074 NCBI chrNW_004955491:4,344,874...4,360,205
Ensembl chrNW_004955491:4,344,874...4,360,205 		JBrowse link
G Pdia6 protein disulfide isomerase family A member 6 ISO SMPDB SMP:00074 NCBI chrNW_004955487:5,735,698...5,744,601
Ensembl chrNW_004955487:5,735,698...5,748,015 		JBrowse link
G Plb1 phospholipase B1 ISO RGD PMID:8117729 PMID:21718801 RGD:6484679 RGD:6903951 NCBI chrNW_004955469:10,370,646...10,511,263
Ensembl chrNW_004955469:10,401,178...10,511,057 		JBrowse link
G Pnliprp2 pancreatic lipase related protein 2 ISO RGD PMID:21718801 RGD:6484679 NCBI chrNW_004955431:21,425,345...21,442,979
Ensembl chrNW_004955431:21,425,330...21,442,979 		JBrowse link
G Pnpla4 patatin like phospholipase domain containing 4 ISO SMPDB SMP:00074 NCBI chrNW_004955499:5,875,706...5,925,809
Ensembl chrNW_004955499:5,892,761...5,924,736 		JBrowse link
G Ppib peptidylprolyl isomerase B ISO SMPDB SMP:00074 NCBI chrNW_004955450:11,241,279...11,246,628
Ensembl chrNW_004955450:11,241,279...11,249,056 		JBrowse link
G Rbp2 retinol binding protein 2 ISO RGD PMID:21718801 RGD:6484679 NCBI chrNW_004955508:6,111,558...6,135,929
Ensembl chrNW_004955508:6,111,168...6,136,010 		JBrowse link
G Rdh11 retinol dehydrogenase 11 ISO SMPDB SMP:00074 NCBI chrNW_004955466:2,506,641...2,521,506
Ensembl chrNW_004955466:2,508,338...2,520,903 		JBrowse link
G Rdh12 retinol dehydrogenase 12 ISO SMPDB SMP:00074 NCBI chrNW_004955466:2,473,145...2,485,779
Ensembl chrNW_004955466:2,473,096...2,487,623 		JBrowse link
G Rdh8 retinol dehydrogenase 8 ISO SMPDB SMP:00074 NCBI chrNW_004955495:1,388,385...1,393,209
Ensembl chrNW_004955495:1,388,424...1,392,552 		JBrowse link
G Retsat retinol saturase ISO SMPDB SMP:00074 NCBI chrNW_004955424:2,107,602...2,122,029
Ensembl chrNW_004955424:2,107,602...2,122,029 		JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 ISO SMPDB SMP:00074 NCBI chrNW_004955423:23,184,326...23,208,206
Ensembl chrNW_004955423:23,183,937...23,208,282 		JBrowse link
G Scarb1 scavenger receptor class B member 1 ISO RGD PMID:21718801 RGD:6484679 NCBI chrNW_004955482:4,813,502...4,836,479
Ensembl chrNW_004955482:4,813,955...4,837,392 		JBrowse link
G Sdf2l1 stromal cell derived factor 2 like 1 ISO SMPDB SMP:00074 NCBI chrNW_004955442:17,468,302...17,470,296
Ensembl chrNW_004955442:17,468,302...17,470,296 		JBrowse link
riboflavin metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acp1 acid phosphatase 1 ISO SMPDB SMP:00070 NCBI chrNW_004955487:290,434...302,405
Ensembl chrNW_004955487:290,557...302,547 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 ISO SMPDB SMP:00070 NCBI chrNW_004955436:12,416,147...12,477,214
Ensembl chrNW_004955436:12,415,737...12,480,359 		JBrowse link
G Flad1 flavin adenine dinucleotide synthetase 1 ISO SMPDB SMP:00070 NCBI chrNW_004955545:1,487,929...1,495,808
Ensembl chrNW_004955545:1,487,818...1,497,839 		JBrowse link
G Rfk riboflavin kinase ISO SMPDB SMP:00070 NCBI chrNW_004955512:2,889,265...2,898,195
Ensembl chrNW_004955512:2,890,106...2,898,195 		JBrowse link
G Tyr tyrosinase ISO SMPDB SMP:00070 NCBI chrNW_004955414:4,244,035...4,314,001
Ensembl chrNW_004955414:4,244,035...4,314,001 		JBrowse link
Sirtuin mediated pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sirt1 sirtuin 1 ISO RGD PMID:26785480 RGD:11100032 NCBI chrNW_004955425:20,280,725...20,307,663
Ensembl chrNW_004955425:20,279,963...20,307,663 		JBrowse link
G Sirt2 sirtuin 2 ISO RGD PMID:26785480 RGD:11100032 NCBI chrNW_004955468:626,365...644,441
Ensembl chrNW_004955468:626,365...644,441 		JBrowse link
G Sirt3 sirtuin 3 ISO RGD PMID:26785480 RGD:11100032 NCBI chrNW_004955476:11,794,951...11,826,244
Ensembl chrNW_004955476:11,794,951...11,826,237 		JBrowse link
G Sirt4 sirtuin 4 ISO RGD PMID:26785480 RGD:11100032 NCBI chrNW_004955455:11,322,812...11,334,786
Ensembl chrNW_004955455:11,324,479...11,334,817 		JBrowse link
G Sirt5 sirtuin 5 ISO RGD PMID:26785480 RGD:11100032 NCBI chrNW_004955465:1,129,217...1,167,604
Ensembl chrNW_004955465:1,129,217...1,167,604 		JBrowse link
G Sirt6 sirtuin 6 ISO RGD PMID:26785480 RGD:11100032 NCBI chrNW_004955495:4,641,883...4,650,518
Ensembl chrNW_004955495:4,644,023...4,650,083 		JBrowse link
G Sirt7 sirtuin 7 ISO RGD PMID:26785480 RGD:11100032 NCBI chrNW_004955506:1,252,271...1,258,728
Ensembl chrNW_004955506:1,252,274...1,258,728 		JBrowse link
thiamine metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ntpcr nucleoside-triphosphatase, cancer-related ISO SMPDB SMP:00076 NCBI chrNW_004955492:6,253,087...6,279,016
Ensembl chrNW_004955492:6,253,087...6,279,016 		JBrowse link
G Slc19a2 solute carrier family 19 member 2 ISO SMPDB SMP:00076 NCBI chrNW_004955462:7,786,920...7,804,828
Ensembl chrNW_004955462:7,786,913...7,805,792 		JBrowse link
G Thtpa thiamine triphosphatase ISO SMPDB SMP:00076 NCBI chrNW_004955409:36,803,721...36,808,094
Ensembl chrNW_004955409:36,804,258...36,808,091 		JBrowse link
G Tpk1 thiamin pyrophosphokinase 1 ISO SMPDB SMP:00076 NCBI chrNW_004955491:621,941...968,570
Ensembl chrNW_004955491:623,530...968,253 		JBrowse link
ubiquinone biosynthetic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Coq2 coenzyme Q2, polyprenyltransferase ISO SMPDB SMP:00065 NCBI chrNW_004955474:6,403,409...6,422,135 JBrowse link
G Coq3 coenzyme Q3, methyltransferase ISO SMPDB SMP:00065 NCBI chrNW_004955411:25,243,684...25,268,225 JBrowse link
G Coq5 coenzyme Q5, methyltransferase ISO SMPDB SMP:00065 NCBI chrNW_004955455:11,124,009...11,142,665
Ensembl chrNW_004955455:11,124,009...11,142,665 		JBrowse link
G Coq6 coenzyme Q6, monooxygenase ISO SMPDB SMP:00065 NCBI chrNW_004955523:1,444,675...1,458,769
Ensembl chrNW_004955523:1,444,901...1,458,718 		JBrowse link
G Coq7 coenzyme Q7, hydroxylase ISO SMPDB SMP:00065 NCBI chrNW_004955442:3,026,458...3,033,582
Ensembl chrNW_004955442:3,025,484...3,033,582 		JBrowse link
vitamin B6 metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alpl alkaline phosphatase, biomineralization associated ISO SMPDB SMP:00017 NCBI chrNW_004955452:1,820,212...1,873,877
Ensembl chrNW_004955452:1,820,174...1,874,226 		JBrowse link
G Aox1 aldehyde oxidase 1 ISO SMPDB SMP:00017 NCBI chrNW_004955403:827,538...875,856
Ensembl chrNW_004955403:828,066...872,218 		JBrowse link
G Pdxk pyridoxal kinase ISO SMPDB SMP:00017 NCBI chrNW_004955407:41,482,216...41,494,174
Ensembl chrNW_004955407:41,482,216...41,494,177 		JBrowse link
G Pdxp pyridoxal phosphatase ISO SMPDB SMP:00017 NCBI chrNW_004955413:24,055,900...24,063,902 JBrowse link
G Pnpo pyridoxamine 5'-phosphate oxidase ISO SMPDB SMP:00017 NCBI chrNW_004955451:13,184,861...13,190,933
Ensembl chrNW_004955451:13,183,826...13,191,707 		JBrowse link
vitamin K cycle pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ggcx gamma-glutamyl carboxylase ISO RGD PMID:26663892 RGD:11344916 NCBI chrNW_004955424:1,926,924...1,952,635
Ensembl chrNW_004955424:1,936,772...1,952,635 		JBrowse link
G Vkorc1 vitamin K epoxide reductase complex subunit 1 ISO RGD PMID:26663892 RGD:11344916 NCBI chrNW_004955493:7,928,516...7,931,265 JBrowse link
vitamin K metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G F2 coagulation factor II, thrombin ISO SMPDB SMP:00464 NCBI chrNW_004955422:1,356,675...1,367,788
Ensembl chrNW_004955422:1,356,769...1,367,517 		JBrowse link
G Ggcx gamma-glutamyl carboxylase ISO SMPDB SMP:00464 NCBI chrNW_004955424:1,926,924...1,952,635
Ensembl chrNW_004955424:1,936,772...1,952,635 		JBrowse link
G Nqo1 NAD(P)H quinone dehydrogenase 1 ISO SMPDB SMP:00464 NCBI chrNW_004955484:7,012,373...7,028,182
Ensembl chrNW_004955484:7,012,506...7,027,604 		JBrowse link
G Vkorc1 vitamin K epoxide reductase complex subunit 1 ISO SMPDB SMP:00464 NCBI chrNW_004955493:7,928,516...7,931,265 JBrowse link
Term paths to the root