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Pathways
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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:metabolic pathway of other amino acids
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Accession:PW:0000132 term browser browse the term
Definition:Those metabolic reactions involved in the synthesis, utilization and/or degradation of amino acids other than the common 20 amino acids found in protein. Some of these amino acids like carnitine or homocysteine derive from primary amino acids.


show annotations for term's descendants           Sort by:
beta-alanine metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABAT 4-aminobutyrate aminotransferase ISO SMPDB SMP:00007 NCBI chr 6:33,385,779...33,471,348
Ensembl chr 6:33,376,996...33,471,326 		JBrowse link
G ALDH2 aldehyde dehydrogenase 2 family member ISO SMPDB SMP:00007 NCBI chr26:9,319,109...9,361,021 JBrowse link
G ALDH6A1 aldehyde dehydrogenase 6 family member A1 ISO SMPDB SMP:00007 NCBI chr 8:47,280,872...47,304,460
Ensembl chr 8:47,282,235...47,304,283 		JBrowse link
G AOC3 amine oxidase copper containing 3 ISO SMPDB SMP:00007 NCBI chr 9:20,158,581...20,179,773
Ensembl chr 9:20,157,410...20,241,376 		JBrowse link
G CNDP1 carnosine dipeptidase 1 ISO SMPDB SMP:00007 NCBI chr 1:4,875,790...4,912,148
Ensembl chr 1:4,876,794...4,911,976 		JBrowse link
G DPYD dihydropyrimidine dehydrogenase ISO SMPDB SMP:00007 NCBI chr 6:51,789,786...52,564,802
Ensembl chr 6:51,814,573...52,580,923 		JBrowse link
G DPYS dihydropyrimidinase ISO SMPDB SMP:00007 NCBI chr13:5,583,795...5,659,355
Ensembl chr13:5,583,801...5,659,463 		JBrowse link
G GAD1 glutamate decarboxylase 1 ISO SMPDB SMP:00007 NCBI chr36:15,351,289...15,391,701
Ensembl chr36:15,349,683...15,391,824 		JBrowse link
G UPB1 beta-ureidopropionase 1 ISO SMPDB SMP:00007 NCBI chr26:28,194,968...28,225,977
Ensembl chr26:28,195,081...28,225,567 		JBrowse link
carnitine biosynthetic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH9A1 aldehyde dehydrogenase 9 family member A1 ISO SMPDB SMP:00465 NCBI chr38:17,644,464...17,664,462
Ensembl chr38:17,644,459...17,663,886 		JBrowse link
G BBOX1 gamma-butyrobetaine hydroxylase 1 ISO SMPDB SMP:00465 NCBI chr21:47,707,648...47,766,732
Ensembl chr21:47,706,717...47,766,503 		JBrowse link
G SETD7 SET domain containing 7, histone lysine methyltransferase ISO SMPDB SMP:00465 NCBI chr19:3,186,620...3,229,305
Ensembl chr19:3,186,906...3,224,113 		JBrowse link
G SHMT1 serine hydroxymethyltransferase 1 ISO SMPDB SMP:00465 NCBI chr 5:41,221,531...41,248,653
Ensembl chr 5:41,221,562...41,253,166 		JBrowse link
G TMLHE trimethyllysine hydroxylase, epsilon ISO SMPDB SMP:00465 NCBI chr  X:123,322,773...123,438,999
Ensembl chr  X:123,324,729...123,438,947 		JBrowse link
creatine metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CKM creatine kinase, M-type ISO RGD PMID:12069495 RGD:1359082 NCBI chr 1:110,210,158...110,218,937
Ensembl chr 1:110,210,152...110,343,383 		JBrowse link
G GAMT guanidinoacetate N-methyltransferase ISO RGD PMID:12069495 RGD:1359082 NCBI chr20:57,440,698...57,442,588 JBrowse link
G GATM glycine amidinotransferase ISO RGD PMID:8021264 RGD:70746 NCBI chr30:11,724,446...11,742,214
Ensembl chr30:11,723,519...11,742,214 		JBrowse link
G SLC6A8 solute carrier family 6 member 8 ISO RGD PMID:12069495 RGD:1359082 NCBI chr  X:121,505,117...121,511,674
Ensembl chr  X:121,505,141...121,510,347 		JBrowse link
glutathione metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANPEP alanyl aminopeptidase, membrane ISO SMPDB SMP:00015 NCBI chr 3:52,764,418...52,779,516
Ensembl chr 3:52,764,418...52,779,746 		JBrowse link
G CASP7 caspase 7 ISO SMPDB SMP:00015 NCBI chr28:24,599,866...24,630,018
Ensembl chr28:24,599,493...24,628,668 		JBrowse link
G GCLC glutamate-cysteine ligase catalytic subunit ISO SMPDB
RGD		 PMID:16137247 PMID:16183645 RGD:1582661 RGD:1582663 SMP:00015 NCBI chr12:20,999,815...21,047,779
Ensembl chr12:21,000,792...21,047,779 		JBrowse link
G GCLM glutamate-cysteine ligase modifier subunit ISO SMPDB
RGD		 PMID:16137247 PMID:16183645 RGD:1582661 RGD:1582663 SMP:00015 NCBI chr 6:55,204,602...55,244,217 JBrowse link
G GGCT gamma-glutamylcyclotransferase ISO SMPDB SMP:00015 NCBI chr14:43,244,220...43,252,930
Ensembl chr14:43,245,102...43,252,923 		JBrowse link
G GGT6 gamma-glutamyltransferase 6 ISO SMPDB SMP:00015 NCBI chr 5:30,540,461...30,543,878
Ensembl chr 5:30,540,450...30,543,773 		JBrowse link
G GPX1 glutathione peroxidase 1 ISO SMPDB SMP:00015 NCBI chr20:39,889,165...39,890,253
Ensembl chr20:39,889,174...39,890,260 		JBrowse link
G GSR glutathione-disulfide reductase ISO SMPDB SMP:00015 NCBI chr16:33,633,949...33,680,411
Ensembl chr16:33,633,968...33,679,752 		JBrowse link
G GSS glutathione synthetase ISO SMPDB SMP:00015 NCBI chr24:23,973,807...24,000,281
Ensembl chr24:23,901,045...23,997,286 		JBrowse link
G GSTO2 glutathione S-transferase omega 2 ISO SMPDB SMP:00015 NCBI chr28:16,580,250...16,604,977
Ensembl chr28:16,586,777...16,604,976 		JBrowse link
G OPLAH 5-oxoprolinase, ATP-hydrolysing ISO SMPDB SMP:00015 NCBI chr13:37,555,035...37,564,241
Ensembl chr13:37,555,045...37,564,810 		JBrowse link
homocysteine metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHCY adenosylhomocysteinase ISO RGD PMID:11741948 PMID:20814827 RGD:7242426 RGD:730275 NCBI chr24:23,410,553...23,423,494
Ensembl chr24:23,411,140...23,419,767 		JBrowse link
G AS3MT arsenite methyltransferase ISO RGD PMID:11790780 RGD:625365 NCBI chr28:15,334,141...15,350,749 JBrowse link
G CARM1 coactivator associated arginine methyltransferase 1 ISO RGD PMID:15866169 RGD:1359044 NCBI chr20:50,328,466...50,371,845
Ensembl chr20:50,331,030...50,348,195 		JBrowse link
G COMT catechol-O-methyltransferase ISO RGD PMID:12584150 RGD:1359089 NCBI chr26:29,359,930...29,381,854
Ensembl chr26:29,360,356...29,366,008 		JBrowse link
G DNMT1 DNA methyltransferase 1 ISO RGD PMID:12473678 RGD:1359078 NCBI chr20:50,872,213...50,928,352
Ensembl chr20:50,879,527...50,928,029 		JBrowse link
G GAMT guanidinoacetate N-methyltransferase ISO RGD PMID:15533043 RGD:1359081 NCBI chr20:57,440,698...57,442,588 JBrowse link
G GNMT glycine N-methyltransferase ISO RGD PMID:15347642 RGD:1359070 NCBI chr12:11,500,363...11,503,075
Ensembl chr12:11,500,392...11,503,481 		JBrowse link
G HNMT histamine N-methyltransferase ISO RGD PMID:11566133 RGD:1359041 NCBI chr19:40,656,266...40,702,498
Ensembl chr19:40,655,161...40,702,218 		JBrowse link
G MTHFR methylenetetrahydrofolate reductase ISO RGD PMID:20814827 RGD:7242426 NCBI chr 2:84,445,526...84,457,435
Ensembl chr 2:84,380,919...84,536,818 		JBrowse link
G NNMT nicotinamide N-methyltransferase ISO RGD PMID:15922112 RGD:1359084 NCBI chr 5:19,026,514...19,044,154
Ensembl chr 5:19,026,556...19,044,016 		JBrowse link
G PCMT1 protein-L-isoaspartate (D-aspartate) O-methyltransferase ISO RGD PMID:8263531 RGD:729481 NCBI chr 1:40,494,441...40,539,453
Ensembl chr 1:40,494,461...40,538,937 		JBrowse link
G PEMT phosphatidylethanolamine N-methyltransferase ISO RGD PMID:8344945 RGD:729486 NCBI chr 5:41,871,685...41,960,831
Ensembl chr 5:41,872,108...41,960,828 		JBrowse link
G PNMT phenylethanolamine N-methyltransferase ISO RGD PMID:12438084 RGD:1359087 NCBI chr 9:22,808,505...22,810,587
Ensembl chr 9:22,808,601...22,810,551 		JBrowse link
G PRMT1 protein arginine methyltransferase 1 ISO RGD PMID:15866169 RGD:1359044 NCBI chr 1:106,849,864...106,859,896
Ensembl chr 1:106,849,864...106,874,075 		JBrowse link
G PRMT5 protein arginine methyltransferase 5 ISO RGD PMID:15866169 RGD:1359044 NCBI chr 8:3,248,349...3,257,567
Ensembl chr 8:3,248,404...3,257,456 		JBrowse link
G PRMT6 protein arginine methyltransferase 6 ISO RGD PMID:15866169 RGD:1359044 NCBI chr 6:44,475,829...44,478,215
Ensembl chr 6:44,477,030...44,478,160 		JBrowse link
G RNMT RNA guanine-7 methyltransferase ISO RGD PMID:11472630 RGD:1359071 NCBI chr 1:24,465,634...24,499,526
Ensembl chr 1:24,430,063...24,497,206 		JBrowse link
G SETDB1 SET domain bifurcated histone lysine methyltransferase 1 ISO RGD PMID:11959841 RGD:1359072 NCBI chr17:60,035,819...60,069,721
Ensembl chr17:60,037,379...60,069,551 		JBrowse link
remethylation pathway of homocysteine metabolism - cobalamin dependent term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MTHFR methylenetetrahydrofolate reductase ISO RGD PMID:20814827 RGD:7242426 NCBI chr 2:84,445,526...84,457,435
Ensembl chr 2:84,380,919...84,536,818 		JBrowse link
G MTR 5-methyltetrahydrofolate-homocysteine methyltransferase ISO RGD PMID:15845641 PMID:20814827 RGD:1359026 RGD:7242426 NCBI chr 4:3,219,851...3,328,000
Ensembl chr 4:3,215,090...3,328,115 		JBrowse link
G MTRR 5-methyltetrahydrofolate-homocysteine methyltransferase reductase ISO RGD PMID:15979034 PMID:20814827 RGD:1359037 RGD:7242426 NCBI chr34:6,068,572...6,119,580
Ensembl chr34:6,070,046...6,098,312 		JBrowse link
remethylation pathway of homocysteine metabolism - cobalamin independent, betaine dependent term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHCY adenosylhomocysteinase ISO SMPDB SMP:00123 NCBI chr24:23,410,553...23,423,494
Ensembl chr24:23,411,140...23,419,767 		JBrowse link
G ALDH7A1 aldehyde dehydrogenase 7 family member A1 ISO SMPDB SMP:00123 NCBI chr11:15,828,581...15,878,556
Ensembl chr11:15,815,936...15,878,516 		JBrowse link
G BHMT betaine--homocysteine S-methyltransferase ISO SMPDB
RGD		 PMID:15845641 PMID:20346934 PMID:20814827 RGD:1359026 RGD:7242426 RGD:7242428 SMP:00123 NCBI chr 3:27,732,381...27,752,168
Ensembl chr 3:27,734,108...27,752,046 		JBrowse link
G CHDH choline dehydrogenase ISO SMPDB SMP:00123 NCBI chr20:36,150,214...36,188,976
Ensembl chr20:36,150,229...36,187,068 		JBrowse link
G MAT2A methionine adenosyltransferase 2A ISO SMPDB SMP:00123 NCBI chr17:39,525,635...39,532,512
Ensembl chr17:39,525,626...39,532,512 		JBrowse link
G MAT2B methionine adenosyltransferase 2B ISO SMPDB SMP:00123 NCBI chr 4:47,703,991...47,726,363
Ensembl chr 4:47,709,576...47,726,360 		JBrowse link
G MTR 5-methyltetrahydrofolate-homocysteine methyltransferase ISO SMPDB SMP:00123 NCBI chr 4:3,219,851...3,328,000
Ensembl chr 4:3,215,090...3,328,115 		JBrowse link
G PEMT phosphatidylethanolamine N-methyltransferase ISO SMPDB SMP:00123 NCBI chr 5:41,871,685...41,960,831
Ensembl chr 5:41,872,108...41,960,828 		JBrowse link
selenoamino acid metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHCY adenosylhomocysteinase ISO SMPDB SMP:00029 NCBI chr24:23,410,553...23,423,494
Ensembl chr24:23,411,140...23,419,767 		JBrowse link
G CBS cystathionine beta-synthase ISO SMPDB SMP:00029 NCBI chr31:37,230,900...37,247,170 JBrowse link
G CTH cystathionine gamma-lyase ISO SMPDB SMP:00029 NCBI chr 6:75,324,328...75,348,476
Ensembl chr 6:75,324,787...75,349,451 		JBrowse link
G GGT1 gamma-glutamyltransferase 1 ISO SMPDB SMP:00029 NCBI chr26:28,301,455...28,315,029 JBrowse link
G MARS1 methionyl-tRNA synthetase 1 ISO SMPDB SMP:00029 NCBI chr10:1,588,503...1,606,752
Ensembl chr10:1,588,875...1,606,750 		JBrowse link
G MAT2A methionine adenosyltransferase 2A ISO SMPDB SMP:00029 NCBI chr17:39,525,635...39,532,512
Ensembl chr17:39,525,626...39,532,512 		JBrowse link
G MAT2B methionine adenosyltransferase 2B ISO SMPDB SMP:00029 NCBI chr 4:47,703,991...47,726,363
Ensembl chr 4:47,709,576...47,726,360 		JBrowse link
G PAPSS1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 ISO SMPDB SMP:00029 NCBI chr32:28,136,741...28,235,529
Ensembl chr32:28,136,909...28,235,484 		JBrowse link
G SCLY selenocysteine lyase ISO SMPDB SMP:00029 NCBI chr25:48,574,648...48,608,367
Ensembl chr25:48,574,130...48,632,035 		JBrowse link
G SEPHS2 selenophosphate synthetase 2 ISO SMPDB SMP:00029 NCBI chr 6:17,667,766...17,670,007 JBrowse link
G SH3BP5 SH3 domain binding protein 5 ISO SMPDB SMP:00029 NCBI chr23:27,202,880...27,217,753
Ensembl chr23:27,202,875...27,334,010 		JBrowse link
taurine and hypotaurine metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADO 2-aminoethanethiol dioxygenase ISO SMPDB SMP:00021 NCBI chr 4:14,698,582...14,702,635
Ensembl chr 4:14,698,616...14,699,428 		JBrowse link
G CDO1 cysteine dioxygenase type 1 ISO SMPDB SMP:00021 NCBI chr11:5,512,996...5,524,556
Ensembl chr11:5,371,378...5,524,562 		JBrowse link
G CSAD cysteine sulfinic acid decarboxylase ISO SMPDB SMP:00021 NCBI chr27:2,005,482...2,036,703
Ensembl chr27:2,005,355...2,036,228 		JBrowse link
G GAD1 glutamate decarboxylase 1 ISO SMPDB SMP:00021 NCBI chr36:15,351,289...15,391,701
Ensembl chr36:15,349,683...15,391,824 		JBrowse link
G GGT6 gamma-glutamyltransferase 6 ISO SMPDB SMP:00021 NCBI chr 5:30,540,461...30,543,878
Ensembl chr 5:30,540,450...30,543,773 		JBrowse link
transsulfuration pathway of homocysteine metabolism term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CBS cystathionine beta-synthase ISO SMPDB
RGD		 PMID:20162368 RGD:7242427 SMP:00455 NCBI chr31:37,230,900...37,247,170 JBrowse link
G CDO1 cysteine dioxygenase type 1 ISO RGD PMID:20162368 RGD:7242427 NCBI chr11:5,512,996...5,524,556
Ensembl chr11:5,371,378...5,524,562 		JBrowse link
G CSAD cysteine sulfinic acid decarboxylase ISO RGD PMID:20162368 RGD:7242427 NCBI chr27:2,005,482...2,036,703
Ensembl chr27:2,005,355...2,036,228 		JBrowse link
G CTH cystathionine gamma-lyase ISO SMPDB
RGD		 PMID:20162368 RGD:7242427 SMP:00455 NCBI chr 6:75,324,328...75,348,476
Ensembl chr 6:75,324,787...75,349,451 		JBrowse link
Term paths to the root