PATHWAY ONTOLOGY - ANNOTATIONS
The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml ).
Term: RNA polymerase II transcription pathway
Accession: PW:0000127
browse the term
Definition: The series of events governing the synthesis of protein-coding messenger RNA (mRNA) precursors and of transcripts of many classes of non-coding genes.
Synonyms: related_synonym: RNA Polymerase II Transcription; transcription by RNA polymerase II
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Ccnc
cyclin C
ISO
RGD
PMID:24088064
RGD:9681732
NCBI chrNW_004936651:1,123,546...1,159,089
Ensembl chrNW_004936651:1,140,895...1,163,944
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Cdc14b
cell division cycle 14B
ISO
pol II carboxyl-terminal domain (CTD)
RGD
PMID:22622228 PMID:23837720
RGD:9681737 RGD:9681738
NCBI chrNW_004936487:430,449...482,517
Ensembl chrNW_004936487:554,611...564,782
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Cdk12
cyclin dependent kinase 12
ISO
pol II carboxyl-terminal domain (CTD)
RGD
PMID:22622228 PMID:23837720
RGD:9681737 RGD:9681738
NCBI chrNW_004936490:14,674,783...14,759,433
Ensembl chrNW_004936490:14,674,800...14,738,818
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Cdk19
cyclin dependent kinase 19
ISO
RGD
PMID:24088064
RGD:9681732
NCBI chrNW_004936564:6,443,041...6,584,767
Ensembl chrNW_004936564:6,442,809...6,567,210
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Cdk7
cyclin dependent kinase 7
ISO
pol II carboxyl-terminal domain (CTD)
RGD
PMID:22622228 PMID:23837720
RGD:9681737 RGD:9681738
NCBI chrNW_004936480:307,089...339,515
Ensembl chrNW_004936480:307,069...339,521
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Cdk8
cyclin dependent kinase 8
ISO
pol II carboxyl-terminal domain (CTD)
RGD
PMID:22622228 PMID:23837720 PMID:24088064
RGD:9681732 RGD:9681737 RGD:9681738
NCBI chrNW_004936948:91,578...236,051
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Cdk9
cyclin dependent kinase 9
ISO
pol II carboxyl-terminal domain (CTD)
RGD
PMID:22622228 PMID:23837720
RGD:9681737 RGD:9681738
NCBI chrNW_004936487:15,446,864...15,450,750
Ensembl chrNW_004936487:15,446,858...15,452,796
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Ctdp1
CTD phosphatase subunit 1
ISO
pol II carboxyl-terminal domain (CTD)
RGD
PMID:22622228 PMID:23837720
RGD:9681737 RGD:9681738
NCBI chrNW_004936616:369,306...407,083
Ensembl chrNW_004936616:369,893...407,093
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Ctdsp1
CTD small phosphatase 1
ISO
pol II carboxyl-terminal domain (CTD)
RGD
PMID:22622228 PMID:23837720
RGD:9681737 RGD:9681738
NCBI chrNW_004936569:901,357...905,149
Ensembl chrNW_004936569:900,439...903,622
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LOC101967362
mediator of RNA polymerase II transcription subunit 6
ISO
RGD
PMID:24088064
RGD:9681732
NCBI chrNW_004936488:195,629...218,762
Ensembl chrNW_004936488:97,118...99,286 Ensembl chrNW_004936488:97,118...99,286
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LOC101972535
dual specificity protein phosphatase CDC14A
ISO
pol II carboxyl-terminal domain (CTD)
RGD
PMID:22622228 PMID:23837720
RGD:9681737 RGD:9681738
NCBI chrNW_004936748:479,026...612,554
Ensembl chrNW_004936748:479,503...623,126
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Med1
mediator complex subunit 1
ISO
RGD
PMID:24088064
RGD:9681732
NCBI chrNW_004936490:14,625,201...14,663,184
Ensembl chrNW_004936490:14,625,897...14,657,802
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Med10
mediator complex subunit 10
ISO
RGD
PMID:24088064
RGD:9681732
NCBI chrNW_004936634:953,567...983,426
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Med11
mediator complex subunit 11
ISO
RGD
PMID:24088064
RGD:9681732
NCBI chrNW_004936677:3,164,290...3,166,734
Ensembl chrNW_004936677:3,164,070...3,166,102
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Med12
mediator complex subunit 12
ISO
RGD
PMID:24088064
RGD:9681732
NCBI chrNW_004936762:460,342...483,264
Ensembl chrNW_004936762:460,342...483,195
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Med12l
mediator complex subunit 12L
ISO
RGD
PMID:24088064
RGD:9681732
NCBI chrNW_004936758:1,384,616...1,656,621
Ensembl chrNW_004936758:1,385,854...1,656,608
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Med13
mediator complex subunit 13
ISO
RGD
PMID:24088064
RGD:9681732
NCBI chrNW_004936490:3,204,717...3,293,458
Ensembl chrNW_004936490:3,202,827...3,293,458
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Med13l
mediator complex subunit 13L
ISO
RGD
PMID:24088064
RGD:9681732
NCBI chrNW_004936558:5,998,760...6,288,666
Ensembl chrNW_004936558:5,998,754...6,289,867
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Med14
mediator complex subunit 14
ISO
RGD
PMID:24088064
RGD:9681732
NCBI chrNW_004936502:7,280,606...7,350,750
Ensembl chrNW_004936502:7,280,534...7,350,435
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Med15
mediator complex subunit 15
ISO
RGD
PMID:24088064
RGD:9681732
NCBI chrNW_004936619:2,687,004...2,780,898
Ensembl chrNW_004936619:2,687,011...2,759,294
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Med16
mediator complex subunit 16
ISO
RGD
PMID:24088064
RGD:9681732
NCBI chrNW_004936588:352,723...370,898
Ensembl chrNW_004936588:355,353...370,859
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Med17
mediator complex subunit 17
ISO
RGD
PMID:24088064
RGD:9681732
NCBI chrNW_004936674:998,036...1,019,937
Ensembl chrNW_004936674:997,259...1,019,953
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Med18
mediator complex subunit 18
ISO
RGD
PMID:24088064
RGD:9681732
NCBI chrNW_004936474:12,464,747...12,475,838
Ensembl chrNW_004936474:12,464,702...12,476,506
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Med19
mediator complex subunit 19
ISO
RGD
PMID:24088064
RGD:9681732
NCBI chrNW_004936581:4,830,872...4,837,583
Ensembl chrNW_004936581:4,831,231...4,837,695
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Med20
mediator complex subunit 20
ISO
RGD
PMID:24088064
RGD:9681732
NCBI chrNW_004936476:17,896,689...17,976,102
Ensembl chrNW_004936476:17,895,954...17,912,835
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Med21
mediator complex subunit 21
ISO
RGD
PMID:24088064
RGD:9681732
NCBI chrNW_004936548:461,610...466,682
Ensembl chrNW_004936548:461,605...466,723
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Med22
mediator complex subunit 22
ISO
RGD
PMID:24088064
RGD:9681732
NCBI chrNW_004936669:3,535,646...3,541,643
Ensembl chrNW_004936669:3,535,640...3,542,338
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Med23
mediator complex subunit 23
ISO
RGD
PMID:24088064
RGD:9681732
NCBI chrNW_004937067:14...41,438
Ensembl chrNW_004937067:849...41,298
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Med24
mediator complex subunit 24
ISO
RGD
PMID:24088064
RGD:9681732
NCBI chrNW_004936490:15,146,598...15,181,449
Ensembl chrNW_004936490:15,146,579...15,171,118
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Med25
mediator complex subunit 25
ISO
RGD
PMID:24088064
RGD:9681732
NCBI chrNW_004936664:3,610,004...3,629,850
Ensembl chrNW_004936664:3,609,451...3,628,337
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Med26
mediator complex subunit 26
ISO
RGD
PMID:24088064
RGD:9681732
NCBI chrNW_004936596:4,008,155...4,061,277
Ensembl chrNW_004936596:4,008,118...4,063,421
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Med27
mediator complex subunit 27
ISO
RGD
PMID:24088064
RGD:9681732
NCBI chrNW_004936487:18,523,979...18,711,584
Ensembl chrNW_004936487:18,523,010...18,711,618
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Med28
mediator complex subunit 28
ISO
RGD
PMID:24088064
RGD:9681732
NCBI chrNW_004936477:10,586,436...10,592,366
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Med29
mediator complex subunit 29
ISO
RGD
PMID:24088064
RGD:9681732
NCBI chrNW_004936661:2,241,182...2,244,582
Ensembl chrNW_004936661:2,241,215...2,244,569
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Med30
mediator complex subunit 30
ISO
RGD
PMID:24088064
RGD:9681732
NCBI chrNW_004936470:28,798,356...28,822,143
Ensembl chrNW_004936470:28,798,649...28,817,176
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Med31
mediator complex subunit 31
ISO
RGD
PMID:24088064
RGD:9681732
NCBI chrNW_004936677:1,345,448...1,352,155
Ensembl chrNW_004936677:1,345,456...1,351,176
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Med4
mediator complex subunit 4
ISO
RGD
PMID:24088064
RGD:9681732
NCBI chrNW_004936565:1,397,434...1,414,674
Ensembl chrNW_004936565:1,396,088...1,415,248
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Med7
mediator complex subunit 7
ISO
RGD
PMID:24088064
RGD:9681732
NCBI chrNW_004936515:5,987,923...5,993,074
Ensembl chrNW_004936515:5,987,858...5,993,074
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Med8
mediator complex subunit 8
ISO
RGD
PMID:24088064
RGD:9681732
NCBI chrNW_004936474:24,782,751...24,788,066
Ensembl chrNW_004936474:24,781,206...24,788,101
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Med9
mediator complex subunit 9
ISO
RGD
PMID:24088064
RGD:9681732
NCBI chrNW_004936741:1,083,822...1,119,967
Ensembl chrNW_004936741:1,106,741...1,120,053
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Polr2a
RNA polymerase II subunit A
ISO
RGD
PMID:22960599
RGD:9588243
NCBI chrNW_004936595:755,585...781,692
Ensembl chrNW_004936595:755,535...781,783
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Polr2b
RNA polymerase II subunit B
ISO
RGD
PMID:22960599
RGD:9588243
NCBI chrNW_004936482:19,073,125...19,119,424
Ensembl chrNW_004936482:19,073,124...19,119,421
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Polr2c
RNA polymerase II subunit C
ISO
RGD
PMID:22960599
RGD:9588243
NCBI chrNW_004936475:9,519,325...9,528,121
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Polr2d
RNA polymerase II subunit D
ISO
RGD
PMID:22960599
RGD:9588243
NCBI chrNW_004936469:43,482,557...43,495,449
Ensembl chrNW_004936469:43,482,507...43,495,441
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Polr2e
RNA polymerase II, I and III subunit E
ISO
RGD
PMID:22960599
RGD:9588243
NCBI chrNW_004936588:494,445...499,659
Ensembl chrNW_004936588:494,399...499,952
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Polr2f
RNA polymerase II, I and III subunit F
ISO
RGD
PMID:22960599
RGD:9588243
NCBI chrNW_004936492:3,186,930...3,196,738
Ensembl chrNW_004936492:3,186,760...3,196,796
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Polr2g
RNA polymerase II subunit G
ISO
RGD
PMID:22960599
RGD:9588243
NCBI chrNW_004936581:523,018...528,167
Ensembl chrNW_004936581:522,950...528,933
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Polr2h
RNA polymerase II, I and III subunit H
ISO
RGD
PMID:22960599
RGD:9588243
NCBI chrNW_004936578:5,519,482...5,528,355
Ensembl chrNW_004936578:5,519,462...5,523,744
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Polr2i
RNA polymerase II subunit I
ISO
RGD
PMID:22960599
RGD:9588243
NCBI chrNW_004936922:130,248...131,843
Ensembl chrNW_004936922:130,257...131,828
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Polr2j
RNA polymerase II subunit J
ISO
RGD
PMID:22960599
RGD:9588243
NCBI chrNW_004936543:1,895,827...1,899,918
Ensembl chrNW_004936543:1,895,828...1,899,904
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Polr2k
RNA polymerase II, I and III subunit K
ISO
RGD
PMID:22960599
RGD:9588243
NCBI chrNW_004936470:43,079,377...43,083,251
Ensembl chrNW_004936470:43,081,284...43,083,236
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Polr2l
RNA polymerase II, I and III subunit L
ISO
RGD
PMID:22960599
RGD:9588243
NCBI chrNW_004936544:652,968...653,683
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Rpap2
RNA polymerase II associated protein 2
ISO
pol II carboxyl-terminal domain (CTD)
RGD
PMID:22622228 PMID:23837720
RGD:9681737 RGD:9681738
NCBI chrNW_004936537:6,692,000...6,778,275
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Ssu72
SSU72 homolog, RNA polymerase II CTD phosphatase
ISO
pol II carboxyl-terminal domain (CTD)
RGD
PMID:22622228 PMID:23837720
RGD:9681737 RGD:9681738
NCBI chrNW_004936737:1,678,425...1,705,569
Ensembl chrNW_004936737:1,678,425...1,705,609
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Clp1
cleavage factor polyribonucleotide kinase subunit 1
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 RGD:9681742
NCBI chrNW_004936581:4,870,126...4,873,158
Ensembl chrNW_004936581:4,869,686...4,873,217
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Cpsf1
cleavage and polyadenylation specific factor 1
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 RGD:9681742
NCBI chrNW_004936470:7,848,846...7,857,291
Ensembl chrNW_004936470:7,849,329...7,857,214
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Cpsf2
cleavage and polyadenylation specific factor 2
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 RGD:9681742
NCBI chrNW_004936733:367,082...397,242
Ensembl chrNW_004936733:367,109...397,242
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Cpsf3
cleavage and polyadenylation specific factor 3
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 RGD:9681742
NCBI chrNW_004936532:5,814,331...5,850,188
Ensembl chrNW_004936532:5,814,329...5,850,352
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Cpsf4
cleavage and polyadenylation specific factor 4
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 RGD:9681742
NCBI chrNW_004936750:1,699,738...1,715,993
Ensembl chrNW_004936750:1,699,521...1,719,423
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Cpsf6
cleavage and polyadenylation specific factor 6
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 RGD:9681742
NCBI chrNW_004936545:7,045,043...7,077,710
Ensembl chrNW_004936545:7,045,043...7,077,736
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Cpsf7
cleavage and polyadenylation specific factor 7
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 RGD:9681742
NCBI chrNW_004936581:1,629,078...1,651,147
Ensembl chrNW_004936581:1,629,041...1,651,328
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Cstf1
cleavage stimulation factor subunit 1
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 RGD:9681742
NCBI chrNW_004936875:310,491...319,027
Ensembl chrNW_004936875:310,442...320,085
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Cstf2
cleavage stimulation factor subunit 2
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 RGD:9681742
NCBI chrNW_004936584:6,042,785...6,066,758
Ensembl chrNW_004936584:6,040,336...6,066,703
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Cstf2t
cleavage stimulation factor subunit 2 tau variant
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 RGD:9681742
NCBI chrNW_004936787:838,153...842,118
Ensembl chrNW_004936787:838,485...840,353
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Cstf3
cleavage stimulation factor subunit 3
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 RGD:9681742
NCBI chrNW_004936533:4,754,335...4,832,278
Ensembl chrNW_004936533:4,754,514...4,831,769
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Dxo
decapping exoribonuclease
ISO
RGD
PMID:21957020
RGD:9681741
NCBI chrNW_004936727:1,576,823...1,579,158
Ensembl chrNW_004936727:1,576,886...1,579,154
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Fip1l1
factor interacting with PAPOLA and CPSF1
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 RGD:9681742
NCBI chrNW_004936482:16,126,608...16,194,729
Ensembl chrNW_004936482:16,126,536...16,193,962
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LOC101973872
bcl-2-like protein 2
ISO
RGD
PMID:24243805
RGD:9681742
NCBI chrNW_004936722:1,039,970...1,044,942
Ensembl chrNW_004936722:1,053,326...1,059,477 Ensembl chrNW_004936722:1,053,326...1,059,477
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Nudt21
nudix hydrolase 21
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 RGD:9681742
NCBI chrNW_004936475:8,739,992...8,759,165
Ensembl chrNW_004936475:8,741,821...8,759,223
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Papola
poly(A) polymerase alpha
ISO
RGD
PMID:24243805
RGD:9681742
NCBI chrNW_004936604:770,050...833,950
Ensembl chrNW_004936604:770,054...834,609
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Papolb
poly(A) polymerase beta
ISO
RGD
PMID:24243805
RGD:9681742
NCBI chrNW_004936765:1,061,846...1,066,002
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Papolg
poly(A) polymerase gamma
ISO
RGD
PMID:24243805
RGD:9681742
NCBI chrNW_004936491:6,285,209...6,320,646
Ensembl chrNW_004936491:6,285,206...6,322,668
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Pcf11
PCF11 cleavage and polyadenylation factor subunit
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 RGD:9681742
NCBI chrNW_004936498:11,307,644...11,333,692
Ensembl chrNW_004936498:11,307,568...11,337,596
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Sympk
symplekin scaffold protein
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 RGD:9681742
NCBI chrNW_004936706:2,161,933...2,195,586
Ensembl chrNW_004936706:2,158,608...2,195,640
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Wdr33
WD repeat domain 33
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 RGD:9681742
NCBI chrNW_004936469:43,505,507...43,610,851
Ensembl chrNW_004936469:43,505,476...43,610,851
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Xrn2
5'-3' exoribonuclease 2
ISO
RGD
PMID:21957020
RGD:9681741
NCBI chrNW_004936620:4,069,956...4,145,212
Ensembl chrNW_004936620:4,069,934...4,145,745
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Ncbp1
nuclear cap binding protein subunit 1
ISO
RGD
PMID:24354960
RGD:9684851
NCBI chrNW_004936524:6,429,735...6,465,035
Ensembl chrNW_004936524:6,429,185...6,465,035
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Ncbp2
nuclear cap binding protein subunit 2
ISO
RGD
PMID:24354960
RGD:9684851
NCBI chrNW_004936833:920,683...928,047
Ensembl chrNW_004936833:920,674...928,047
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Ramac
RNA guanine-7 methyltransferase activating subunit
ISO
RGD
PMID:24354960
RGD:9684851
NCBI chrNW_004936483:17,634,873...17,643,740
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Rngtt
RNA guanylyltransferase and 5'-phosphatase
ISO
RGD
PMID:24354960
RGD:9684851
NCBI chrNW_004936510:3,186,552...3,405,862
Ensembl chrNW_004936510:3,186,506...3,406,159
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Rnmt
RNA guanine-7 methyltransferase
ISO
RGD
PMID:24354960
RGD:9684851
NCBI chrNW_004936626:3,132,781...3,156,252
Ensembl chrNW_004936626:3,132,772...3,153,920
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Aff1
ALF transcription elongation factor 1
ISO
RGD
PMID:22895430
RGD:9681740
NCBI chrNW_004936920:43,047...227,452
Ensembl chrNW_004936920:43,338...227,522
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Aff4
ALF transcription elongation factor 4
ISO
RGD
PMID:22895430
RGD:9681740
NCBI chrNW_004936647:2,242,476...2,342,409
Ensembl chrNW_004936647:2,242,319...2,336,532
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Ccnk
cyclin K
ISO
RGD
PMID:24050178
RGD:9681735
NCBI chrNW_004936604:3,283,996...3,316,516
Ensembl chrNW_004936604:3,283,715...3,319,572
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Ccnt1
cyclin T1
ISO
RGD
PMID:24050178
RGD:9681735
NCBI chrNW_004936512:6,567,663...6,588,107
Ensembl chrNW_004936512:6,562,974...6,588,409
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Ccnt2
cyclin T2
ISO
RGD
PMID:24050178
RGD:9681735
NCBI chrNW_004936469:40,799,428...40,837,462
Ensembl chrNW_004936469:40,803,819...40,837,433
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Cdc73
cell division cycle 73
ISO
RGD
PMID:20060942
RGD:9588246
NCBI chrNW_004936638:1,365,457...1,482,497
Ensembl chrNW_004936638:1,365,648...1,483,277
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Cdk9
cyclin dependent kinase 9
ISO
RGD
PMID:24050178
RGD:9681735
NCBI chrNW_004936487:15,446,864...15,450,750
Ensembl chrNW_004936487:15,446,858...15,452,796
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Ctr9
CTR9 homolog, Paf1/RNA polymerase II complex component
ISO
RGD
PMID:20060942
RGD:9588246
NCBI chrNW_004936528:7,585,937...7,613,022
Ensembl chrNW_004936528:7,585,787...7,613,047
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Eaf1
ELL associated factor 1
ISO
RGD
PMID:22895430
RGD:9681740
NCBI chrNW_004936473:2,950,321...2,963,560
Ensembl chrNW_004936473:2,949,692...2,963,554
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Eaf2
ELL associated factor 2
ISO
RGD
PMID:22895430
RGD:9681740
NCBI chrNW_004936536:8,213,794...8,257,595
Ensembl chrNW_004936536:8,213,763...8,258,201
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Ell
elongation factor for RNA polymerase II
ISO
RGD
PMID:22895430
RGD:9681740
NCBI chrNW_004936596:2,745,862...2,812,513
Ensembl chrNW_004936596:2,745,825...2,812,880
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Ell2
elongation factor for RNA polymerase II 2
ISO
RGD
PMID:22895430
RGD:9681740
NCBI chrNW_004936523:7,399,426...7,470,895
Ensembl chrNW_004936523:7,399,421...7,473,158
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Ell3
elongation factor for RNA polymerase II 3
ISO
RGD
PMID:22895430
RGD:9681740
NCBI chrNW_004936471:6,835,410...6,838,582
Ensembl chrNW_004936471:6,835,930...6,838,544
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Gtf2f1
general transcription factor IIF subunit 1
ISO
RGD
PMID:24050178
RGD:9681735
NCBI chrNW_004936588:3,742,880...3,750,400
Ensembl chrNW_004936588:3,742,921...3,750,196
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Gtf2f2
general transcription factor IIF subunit 2
ISO
RGD
PMID:24050178
RGD:9681735
NCBI chrNW_004936791:1,244,224...1,390,659
Ensembl chrNW_004936791:1,244,186...1,391,205
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Leo1
LEO1 homolog, Paf1/RNA polymerase II complex component
ISO
RGD
PMID:20060942
RGD:9588246
NCBI chrNW_004936471:13,753,061...13,783,990
Ensembl chrNW_004936471:13,753,030...13,784,049
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Mllt1
MLLT1 super elongation complex subunit
ISO
RGD
PMID:22895430
RGD:9681740
NCBI chrNW_004936588:3,619,480...3,678,532
Ensembl chrNW_004936588:3,619,493...3,669,854
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Mllt3
MLLT3 super elongation complex subunit
ISO
RGD
PMID:22895430
RGD:9681740
NCBI chrNW_004936652:2,040,685...2,309,059
Ensembl chrNW_004936652:2,044,874...2,308,832
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Ncbp1
nuclear cap binding protein subunit 1
ISO
RGD
PMID:24354960
RGD:9684851
NCBI chrNW_004936524:6,429,735...6,465,035
Ensembl chrNW_004936524:6,429,185...6,465,035
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Ncbp2
nuclear cap binding protein subunit 2
ISO
RGD
PMID:24354960
RGD:9684851
NCBI chrNW_004936833:920,683...928,047
Ensembl chrNW_004936833:920,674...928,047
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Nelfa
negative elongation factor complex member A
ISO
RGD
PMID:24050178
RGD:9681735
NCBI chrNW_004936477:21,442,493...21,459,999
Ensembl chrNW_004936477:21,442,380...21,464,005
G
Nelfb
negative elongation factor complex member B
ISO
RGD
PMID:24050178
RGD:9681735
NCBI chrNW_004936669:726,731...738,714
Ensembl chrNW_004936669:726,658...738,848
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Nelfcd
negative elongation factor complex member C/D
ISO
RGD
PMID:24050178
RGD:9681735
NCBI chrNW_004936530:1,474,097...1,481,943
Ensembl chrNW_004936530:1,474,136...1,481,567
G
Nelfe
negative elongation factor complex member E
ISO
RGD
PMID:24050178
RGD:9681735
NCBI chrNW_004936727:1,589,942...1,596,009
Ensembl chrNW_004936727:1,589,942...1,598,182
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Paf1
PAF1 homolog, Paf1/RNA polymerase II complex component
ISO
RGD
PMID:20060942
RGD:9588246
NCBI chrNW_004936661:2,236,121...2,241,086
Ensembl chrNW_004936661:2,232,484...2,241,629
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Rngtt
RNA guanylyltransferase and 5'-phosphatase
ISO
RGD
PMID:24354960
RGD:9684851
NCBI chrNW_004936510:3,186,552...3,405,862
Ensembl chrNW_004936510:3,186,506...3,406,159
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Rtf1
RTF1 homolog, Paf1/RNA polymerase II complex component
ISO
RGD
PMID:20060942
RGD:9588246
NCBI chrNW_004936471:4,770,060...4,829,562
Ensembl chrNW_004936471:4,770,063...4,829,578
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Skic8
SKI8 subunit of superkiller complex
ISO
RGD
PMID:20060942
RGD:9588246
NCBI chrNW_004936471:36,704,236...36,723,675
Ensembl chrNW_004936471:36,704,160...36,723,669
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Ssrp1
structure specific recognition protein 1
ISO
RGD
PMID:24050178
RGD:9681735
NCBI chrNW_004936581:5,148,108...5,157,630
Ensembl chrNW_004936581:5,148,050...5,157,667
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Supt16h
SPT16 homolog, facilitates chromatin remodeling subunit
ISO
RGD
PMID:24050178
RGD:9681735
NCBI chrNW_004936880:511,699...545,364
Ensembl chrNW_004936880:508,244...545,369
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Supt4h1
SPT4 homolog, DSIF elongation factor subunit
ISO
RGD
PMID:24050178
RGD:9681735
NCBI chrNW_004936490:4,744,307...4,751,043
Ensembl chrNW_004936490:4,744,443...4,749,868
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Supt5h
SPT5 homolog, DSIF elongation factor subunit
ISO
RGD
PMID:24050178
RGD:9681735
NCBI chrNW_004936661:2,280,390...2,308,085
Ensembl chrNW_004936661:2,280,285...2,308,780
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Tcea1
transcription elongation factor A1
ISO
RGD
PMID:24050178
RGD:9681735
NCBI chrNW_004936496:877,311...918,191
Ensembl chrNW_004936496:877,773...918,175
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Tcea2
transcription elongation factor A2
ISO
RGD
PMID:24050178
RGD:9681735
NCBI chrNW_004936514:11,243,021...11,251,216
Ensembl chrNW_004936514:11,242,739...11,250,260
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Tcea3
transcription elongation factor A3
ISO
RGD
PMID:24050178
RGD:9681735
NCBI chrNW_004936474:8,601,910...8,642,148
Ensembl chrNW_004936474:8,601,869...8,642,304
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Atxn7
ataxin 7
ISO
RGD
PMID:22426530
RGD:9681728
NCBI chrNW_004936637:2,422,260...2,508,681
Ensembl chrNW_004936637:2,426,498...2,508,686
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Atxn7l3
ataxin 7 like 3
ISO
RGD
PMID:22426530
RGD:9681728
NCBI chrNW_004936541:657,196...663,967
Ensembl chrNW_004936541:657,196...663,903
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Ccnh
cyclin H
ISO
RGD
PMID:21592869
RGD:9681726
NCBI chrNW_004936469:5,933,163...5,952,190
Ensembl chrNW_004936469:5,935,131...5,952,460
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Cdk7
cyclin dependent kinase 7
ISO
RGD
PMID:21592869
RGD:9681726
NCBI chrNW_004936480:307,089...339,515
Ensembl chrNW_004936480:307,069...339,521
G
Dr1
down-regulator of transcription 1
ISO
RGD
PMID:22426530
RGD:9681728
NCBI chrNW_004936537:5,835,774...5,853,509
Ensembl chrNW_004936537:5,835,774...5,853,515
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Eny2
ENY2 transcription and export complex 2 subunit
ISO
RGD
PMID:22426530
RGD:9681728
NCBI chrNW_004936470:35,634,650...35,649,683
Ensembl chrNW_004936470:35,639,024...35,649,725
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Ercc2
ERCC excision repair 2, TFIIH core complex helicase subunit
ISO
RGD
PMID:21592869
RGD:9681726
NCBI chrNW_004936706:1,816,561...1,829,638
Ensembl chrNW_004936706:1,816,571...1,829,692
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Ercc3
ERCC excision repair 3, TFIIH core complex helicase subunit
ISO
RGD
PMID:21592869
RGD:9681726
NCBI chrNW_004936469:43,970,002...43,998,279
Ensembl chrNW_004936469:43,969,740...43,998,448
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Ercc5
ERCC excision repair 5, endonuclease
ISO
RGD
PMID:21592869
RGD:9681726
NCBI chrNW_004936472:8,209,482...8,234,696
Ensembl chrNW_004936472:8,209,540...8,234,334
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Gtf2a1
general transcription factor IIA subunit 1
ISO
RGD
PMID:24120742
RGD:9681721
NCBI chrNW_004936488:9,595,344...9,630,357
Ensembl chrNW_004936488:9,600,465...9,630,310
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Gtf2a2
general transcription factor IIA subunit 2
ISO
RGD
PMID:24120742
RGD:9681721
NCBI chrNW_004936471:20,636,997...20,651,986
Ensembl chrNW_004936471:20,636,202...20,652,013
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Gtf2b
general transcription factor IIB
ISO
RGD
PMID:24120742
RGD:9681721
NCBI chrNW_004936732:148,702...178,992
Ensembl chrNW_004936732:148,369...183,067
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Gtf2e1
general transcription factor IIE subunit 1
ISO
RGD
PMID:24120742
RGD:9681721
NCBI chrNW_004936536:7,418,087...7,445,993
Ensembl chrNW_004936536:7,422,334...7,445,949
G
Gtf2e2
general transcription factor IIE subunit 2
ISO
RGD
PMID:24120742
RGD:9681721
NCBI chrNW_004936792:409,637...484,010
Ensembl chrNW_004936792:409,830...484,003
G
Gtf2f1
general transcription factor IIF subunit 1
ISO
RGD
PMID:24120742
RGD:9681721
NCBI chrNW_004936588:3,742,880...3,750,400
Ensembl chrNW_004936588:3,742,921...3,750,196
G
Gtf2f2
general transcription factor IIF subunit 2
ISO
RGD
PMID:24120742
RGD:9681721
NCBI chrNW_004936791:1,244,224...1,390,659
Ensembl chrNW_004936791:1,244,186...1,391,205
G
Gtf2h1
general transcription factor IIH subunit 1
ISO
RGD
PMID:21592869
RGD:9681726
NCBI chrNW_004936528:903,429...940,308
Ensembl chrNW_004936528:903,322...940,313
G
Gtf2h3
general transcription factor IIH subunit 3
ISO
RGD
PMID:21592869
RGD:9681726
NCBI chrNW_004936558:1,176,154...1,196,028
Ensembl chrNW_004936558:1,173,064...1,196,063
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Gtf2h4
general transcription factor IIH subunit 4
ISO
RGD
PMID:21592869
RGD:9681726
NCBI chrNW_004936837:546,561...552,686
Ensembl chrNW_004936837:546,509...552,754
G
Gtf2h5
general transcription factor IIH subunit 5
ISO
RGD
PMID:21592869
RGD:9681726
NCBI chrNW_004936489:9,983,935...9,993,179
Ensembl chrNW_004936489:9,992,156...9,992,938
G
Hcfc2
host cell factor C2
ISO
RGD
PMID:22426530
RGD:9681728
NCBI chrNW_004936492:10,390,603...10,426,232
Ensembl chrNW_004936492:10,390,268...10,426,206
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Kat14
lysine acetyltransferase 14
ISO
RGD
PMID:22426530
RGD:9681728
NCBI chrNW_004936485:1,992,894...2,031,632
Ensembl chrNW_004936485:1,955,924...2,031,650
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Kat2a
lysine acetyltransferase 2A
ISO
RGD
PMID:22426530
RGD:9681728
NCBI chrNW_004936490:16,952,698...16,960,424
Ensembl chrNW_004936490:16,952,363...16,960,489
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Kat2b
lysine acetyltransferase 2B
ISO
RGD
PMID:22426530
RGD:9681728
NCBI chrNW_004936473:12,341,545...12,415,637
Ensembl chrNW_004936473:12,344,343...12,417,875
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Mbip
MAP3K12 binding inhibitory protein 1
ISO
RGD
PMID:22426530
RGD:9681728
NCBI chrNW_004936494:10,315,416...10,338,893
Ensembl chrNW_004936494:10,313,442...10,338,950
G
Mnat1
MNAT1 component of CDK activating kinase
ISO
RGD
PMID:21592869
RGD:9681726
NCBI chrNW_004936495:4,909,427...5,128,113
Ensembl chrNW_004936495:4,909,380...5,128,113
G
Pole3
DNA polymerase epsilon 3, accessory subunit
ISO
RGD
PMID:22426530
RGD:9681728
NCBI chrNW_004936559:220,941...222,783
G
Sgf29
SAGA complex associated factor 29
ISO
RGD
PMID:22426530
RGD:9681728
NCBI chrNW_004936501:12,008,601...12,024,113
Ensembl chrNW_004936501:12,008,425...12,028,239
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Supt20h
SPT20 homolog, SAGA complex component
ISO
RGD
PMID:22426530
RGD:9681728
NCBI chrNW_004936472:31,119,671...31,129,939
G
Supt3h
SPT3 homolog, SAGA and STAGA complex component
ISO
RGD
PMID:22426530
RGD:9681728
NCBI chrNW_004936476:14,857,428...15,336,145
Ensembl chrNW_004936476:14,866,970...15,334,893
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Supt7l
SPT7 like, STAGA complex subunit gamma
ISO
RGD
PMID:22426530
RGD:9681728
NCBI chrNW_004936493:4,959,725...4,969,780
Ensembl chrNW_004936493:4,960,420...4,973,452
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Tada1
transcriptional adaptor 1
ISO
RGD
PMID:22426530
RGD:9681728
NCBI chrNW_004936481:19,031,207...19,046,057
Ensembl chrNW_004936481:19,031,207...19,046,062
G
Tada2a
transcriptional adaptor 2A
ISO
RGD
PMID:22426530
RGD:9681728
NCBI chrNW_004936490:873,675...924,582
Ensembl chrNW_004936490:872,945...924,614
G
Tada2b
transcriptional adaptor 2B
ISO
RGD
PMID:22426530
RGD:9681728
NCBI chrNW_004936477:18,876,132...18,878,760
Ensembl chrNW_004936477:18,877,501...18,878,529
G
Tada3
transcriptional adaptor 3
ISO
RGD
PMID:22426530
RGD:9681728
NCBI chrNW_004936602:3,375,971...3,388,787
Ensembl chrNW_004936602:3,376,033...3,388,820
G
Taf1
TATA-box binding protein associated factor 1
ISO
RGD
PMID:23146842
RGD:9681723
NCBI chrNW_004936762:189,710...271,759
G
Taf10
TATA-box binding protein associated factor 10
ISO
RGD
PMID:22426530 PMID:23146842
RGD:9681723 RGD:9681728
NCBI chrNW_004936842:667,960...669,367
Ensembl chrNW_004936842:667,936...669,441
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Taf11
TATA-box binding protein associated factor 11
ISO
RGD
PMID:23146842
RGD:9681723
NCBI chrNW_004936476:24,272,406...24,285,577
Ensembl chrNW_004936476:24,271,895...24,285,612
G
Taf12
TATA-box binding protein associated factor 12
ISO
RGD
PMID:22426530 PMID:23146842
RGD:9681723 RGD:9681728
NCBI chrNW_004936474:12,695,508...12,719,384
Ensembl chrNW_004936474:12,693,018...12,720,136
G
Taf13
TATA-box binding protein associated factor 13
ISO
RGD
PMID:23146842
RGD:9681723
NCBI chrNW_004936704:613,261...623,407
Ensembl chrNW_004936704:613,261...623,401
G
Taf15
TATA-box binding protein associated factor 15
ISO
RGD
PMID:23146842
RGD:9681723
NCBI chrNW_004936490:199,226...230,190
Ensembl chrNW_004936490:199,201...230,244
G
Taf2
TATA-box binding protein associated factor 2
ISO
RGD
PMID:23146842
RGD:9681723
NCBI chrNW_004936470:26,871,865...26,951,804
Ensembl chrNW_004936470:26,871,847...26,951,806
G
Taf3
TATA-box binding protein associated factor 3
ISO
RGD
PMID:23146842
RGD:9681723
NCBI chrNW_004936484:6,834,935...7,002,167
Ensembl chrNW_004936484:6,834,103...7,002,198
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Taf4
TATA-box binding protein associated factor 4
ISO
RGD
PMID:23146842
RGD:9681723
NCBI chrNW_004936514:9,694,509...9,722,101
Ensembl chrNW_004936514:9,694,509...9,722,107
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Taf5
TATA-box binding protein associated factor 5
ISO
RGD
PMID:23146842
RGD:9681723
NCBI chrNW_004936600:2,683,045...2,700,272
Ensembl chrNW_004936600:2,679,807...2,700,274
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Taf5l
TATA-box binding protein associated factor 5 like
ISO
RGD
PMID:22426530
RGD:9681728
NCBI chrNW_004936484:20,123,039...20,143,063
Ensembl chrNW_004936484:20,127,235...20,143,273
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Taf6
TATA-box binding protein associated factor 6
ISO
RGD
PMID:23146842
RGD:9681723
NCBI chrNW_004936543:250,174...256,405
Ensembl chrNW_004936543:247,096...256,629
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Taf6l
TATA-box binding protein associated factor 6 like
ISO
RGD
PMID:22426530
RGD:9681728
NCBI chrNW_004936581:504,700...519,826
Ensembl chrNW_004936581:504,742...516,737
G
Taf7
TATA-box binding protein associated factor 7
ISO
RGD
PMID:23146842
RGD:9681723
NCBI chrNW_004936504:12,824,928...12,827,238
Ensembl chrNW_004936504:12,824,953...12,827,214
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Taf8
TATA-box binding protein associated factor 8
ISO
RGD
PMID:23146842
RGD:9681723
NCBI chrNW_004936476:17,779,474...17,798,465
Ensembl chrNW_004936476:17,779,242...17,798,505
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Taf9
TATA-box binding protein associated factor 9
ISO
RGD
PMID:22426530 PMID:23146842
RGD:9681723 RGD:9681728
NCBI chrNW_004936480:252,435...256,609
Ensembl chrNW_004936480:252,435...256,609
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Tbp
TATA-box binding protein
ISO
RGD
PMID:23146842 PMID:24120742
RGD:9681721 RGD:9681723
NCBI chrNW_004937098:46,572...65,304
Ensembl chrNW_004937098:46,248...65,441
G
Trrap
transformation/transcription domain associated protein
ISO
RGD
PMID:22426530
RGD:9681728
NCBI chrNW_004936750:1,245,926...1,360,226
Ensembl chrNW_004936750:1,248,320...1,359,473
G
Usp22
ubiquitin specific peptidase 22
ISO
RGD
PMID:22426530
RGD:9681728
NCBI chrNW_004936741:580,230...618,322
Ensembl chrNW_004936741:580,224...618,628
G
Wdr5
WD repeat domain 5
ISO
RGD
PMID:22426530
RGD:9681728
NCBI chrNW_004936669:2,943,759...2,959,788
Ensembl chrNW_004936669:2,943,656...2,958,409
G
Yeats2
YEATS domain containing 2
ISO
RGD
PMID:22426530
RGD:9681728
NCBI chrNW_004936578:6,004,427...6,075,414
Ensembl chrNW_004936578:6,006,018...6,075,449
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Zzz3
zinc finger ZZ-type containing 3
ISO
RGD
PMID:22426530
RGD:9681728
NCBI chrNW_004936571:4,391,318...4,525,720
Ensembl chrNW_004936571:4,423,662...4,524,926
G
Clp1
cleavage factor polyribonucleotide kinase subunit 1
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 RGD:9681742
NCBI chrNW_004936581:4,870,126...4,873,158
Ensembl chrNW_004936581:4,869,686...4,873,217
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Cpsf1
cleavage and polyadenylation specific factor 1
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 RGD:9681742
NCBI chrNW_004936470:7,848,846...7,857,291
Ensembl chrNW_004936470:7,849,329...7,857,214
G
Cpsf2
cleavage and polyadenylation specific factor 2
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 RGD:9681742
NCBI chrNW_004936733:367,082...397,242
Ensembl chrNW_004936733:367,109...397,242
G
Cpsf3
cleavage and polyadenylation specific factor 3
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 RGD:9681742
NCBI chrNW_004936532:5,814,331...5,850,188
Ensembl chrNW_004936532:5,814,329...5,850,352
G
Cpsf4
cleavage and polyadenylation specific factor 4
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 RGD:9681742
NCBI chrNW_004936750:1,699,738...1,715,993
Ensembl chrNW_004936750:1,699,521...1,719,423
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Cpsf6
cleavage and polyadenylation specific factor 6
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 RGD:9681742
NCBI chrNW_004936545:7,045,043...7,077,710
Ensembl chrNW_004936545:7,045,043...7,077,736
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Cpsf7
cleavage and polyadenylation specific factor 7
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 RGD:9681742
NCBI chrNW_004936581:1,629,078...1,651,147
Ensembl chrNW_004936581:1,629,041...1,651,328
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Cstf1
cleavage stimulation factor subunit 1
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 RGD:9681742
NCBI chrNW_004936875:310,491...319,027
Ensembl chrNW_004936875:310,442...320,085
G
Cstf2
cleavage stimulation factor subunit 2
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 RGD:9681742
NCBI chrNW_004936584:6,042,785...6,066,758
Ensembl chrNW_004936584:6,040,336...6,066,703
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Cstf2t
cleavage stimulation factor subunit 2 tau variant
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 RGD:9681742
NCBI chrNW_004936787:838,153...842,118
Ensembl chrNW_004936787:838,485...840,353
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Cstf3
cleavage stimulation factor subunit 3
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 RGD:9681742
NCBI chrNW_004936533:4,754,335...4,832,278
Ensembl chrNW_004936533:4,754,514...4,831,769
G
Dxo
decapping exoribonuclease
ISO
RGD
PMID:21957020
RGD:9681741
NCBI chrNW_004936727:1,576,823...1,579,158
Ensembl chrNW_004936727:1,576,886...1,579,154
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Fip1l1
factor interacting with PAPOLA and CPSF1
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 RGD:9681742
NCBI chrNW_004936482:16,126,608...16,194,729
Ensembl chrNW_004936482:16,126,536...16,193,962
G
Nudt21
nudix hydrolase 21
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 RGD:9681742
NCBI chrNW_004936475:8,739,992...8,759,165
Ensembl chrNW_004936475:8,741,821...8,759,223
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Pcf11
PCF11 cleavage and polyadenylation factor subunit
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 RGD:9681742
NCBI chrNW_004936498:11,307,644...11,333,692
Ensembl chrNW_004936498:11,307,568...11,337,596
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Sympk
symplekin scaffold protein
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 RGD:9681742
NCBI chrNW_004936706:2,161,933...2,195,586
Ensembl chrNW_004936706:2,158,608...2,195,640
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Wdr33
WD repeat domain 33
ISO
RGD
PMID:21957020 PMID:24243805
RGD:9681741 RGD:9681742
NCBI chrNW_004936469:43,505,507...43,610,851
Ensembl chrNW_004936469:43,505,476...43,610,851
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Xrn2
5'-3' exoribonuclease 2
ISO
RGD
PMID:21957020
RGD:9681741
NCBI chrNW_004936620:4,069,956...4,145,212
Ensembl chrNW_004936620:4,069,934...4,145,745
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Aar2
AAR2 splicing factor
ISO
RGD
PMID:23592432
RGD:9686090
NCBI chrNW_004936561:4,709,351...4,729,849
Ensembl chrNW_004936561:4,709,402...4,729,907
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Aqr
aquarius intron-binding spliceosomal factor
ISO
RGD
PMID:23742842
RGD:9686094
NCBI chrNW_004936673:922,393...1,032,572
Ensembl chrNW_004936673:922,341...1,033,307
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Bcas2
BCAS2 pre-mRNA processing factor
ISO
RGD
PMID:23742842
RGD:9686094
NCBI chrNW_004936690:2,900,003...2,913,427
Ensembl chrNW_004936690:2,900,002...2,913,381
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Bud31
BUD31 homolog
ISO
RGD
PMID:23742842
RGD:9686094
NCBI chrNW_004936750:1,676,361...1,684,194
Ensembl chrNW_004936750:1,676,359...1,686,072
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Ccdc12
coiled-coil domain containing 12
ISO
RGD
PMID:23742842
RGD:9686094
NCBI chrNW_004936596:707,841...756,285
Ensembl chrNW_004936596:703,943...756,362
G
Cdc5l
cell division cycle 5 like
ISO
RGD
PMID:23742842
RGD:9686094
NCBI chrNW_004936476:15,647,470...15,698,095
Ensembl chrNW_004936476:15,648,678...15,698,106
G
Crnkl1
crooked neck pre-mRNA splicing factor 1
ISO
RGD
PMID:23742842
RGD:9686094
NCBI chrNW_004936485:328,077...351,323
Ensembl chrNW_004936485:327,835...350,132
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Ctnnbl1
catenin beta like 1
ISO
RGD
PMID:23742842
RGD:9686094
NCBI chrNW_004936561:3,434,232...3,589,341
Ensembl chrNW_004936561:3,434,731...3,589,341
G
Cwc15
CWC15 spliceosome associated protein homolog
ISO
RGD
PMID:23742842
RGD:9686094
NCBI chrNW_004936674:76,022...83,110
Ensembl chrNW_004936674:76,016...83,225
G
Ddx23
DEAD-box helicase 23
ISO
RGD
PMID:19239890 PMID:23454554
RGD:9686089 RGD:9686093
NCBI chrNW_004936512:6,666,972...6,682,596
Ensembl chrNW_004936512:6,666,814...6,682,728
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Ddx39b
DExD-box helicase 39B
ISO
RGD
PMID:23454554
RGD:9686093
NCBI chrNW_004936727:1,968,032...1,980,789
Ensembl chrNW_004936727:1,968,094...1,980,785
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Ddx42
DEAD-box helicase 42
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chrNW_004936541:4,418,743...4,462,513
Ensembl chrNW_004936541:4,429,657...4,465,099
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Dhx15
DEAH-box helicase 15
ISO
RGD
PMID:23454554
RGD:9686093
NCBI chrNW_004936477:4,797,345...4,844,804
G
Dhx16
DEAH-box helicase 16
ISO
RGD
PMID:23454554
RGD:9686093
NCBI chrNW_004936837:324,244...341,667
Ensembl chrNW_004936837:324,243...341,713
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Dhx38
DEAH-box helicase 38
ISO
RGD
PMID:23454554
RGD:9686093
NCBI chrNW_004936475:21,811,693...21,830,560
Ensembl chrNW_004936475:21,811,463...21,830,577
G
Dhx8
DEAH-box helicase 8
ISO
RGD
PMID:23454554
RGD:9686093
NCBI chrNW_004936541:85,273...122,161
Ensembl chrNW_004936541:85,252...123,040
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Eftud2
elongation factor Tu GTP binding domain containing 2
ISO
RGD
PMID:23454554 PMID:23592432
RGD:9686090 RGD:9686093
NCBI chrNW_004936541:1,216,584...1,259,355
Ensembl chrNW_004936541:1,217,138...1,257,935
G
Eif4a3
eukaryotic translation initiation factor 4A3
ISO
RGD
PMID:15145352
RGD:9686404
NCBI chrNW_004936594:4,148,401...4,160,290
Ensembl chrNW_004936594:4,147,685...4,160,293
G
Hnrnpa0
heterogeneous nuclear ribonucleoprotein A0
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chrNW_004936597:4,712,201...4,714,949
G
Hnrnpa1
heterogeneous nuclear ribonucleoprotein A1
ISO
RGD
PMID:17537823 PMID:19239890
RGD:9686089 RGD:9686091
NCBI chrNW_004936512:11,481,017...11,487,737
G
Hnrnpa2b1
heterogeneous nuclear ribonucleoprotein A2/B1
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chrNW_004936478:2,970,261...2,980,277
Ensembl chrNW_004936478:2,970,468...2,980,381
G
Hnrnpa3
heterogeneous nuclear ribonucleoprotein A3
ISO
RGD
PMID:17537823 PMID:19239890
RGD:9686089 RGD:9686091
NCBI chrNW_004936509:6,576,933...6,585,734
Ensembl chrNW_004936509:6,577,001...6,581,934
G
Hnrnpab
heterogeneous nuclear ribonucleoprotein A/B
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chrNW_004936647:478,445...520,361
Ensembl chrNW_004936647:478,443...484,570
G
Hnrnpc
heterogeneous nuclear ribonucleoprotein C
ISO
RGD
PMID:17537823 PMID:19239890
RGD:9686089 RGD:9686091
NCBI chrNW_004936880:368,041...425,967
G
Hnrnpd
heterogeneous nuclear ribonucleoprotein D
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chrNW_004936738:2,096,370...2,115,135
Ensembl chrNW_004936738:2,096,370...2,113,604
G
Hnrnph1
heterogeneous nuclear ribonucleoprotein H1
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chrNW_004936739:1,135,282...1,144,643
Ensembl chrNW_004936739:1,135,289...1,144,643
G
Hnrnph3
heterogeneous nuclear ribonucleoprotein H3
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chrNW_004936521:9,934,272...9,945,154
Ensembl chrNW_004936521:9,934,269...9,945,832
G
Hnrnpk
heterogeneous nuclear ribonucleoprotein K
ISO
RGD
PMID:17537823 PMID:19239890
RGD:9686089 RGD:9686091
NCBI chrNW_004936828:827,660...839,088
Ensembl chrNW_004936828:828,837...838,720
G
Hnrnpl
heterogeneous nuclear ribonucleoprotein L
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chrNW_004936661:1,793,791...1,806,564
Ensembl chrNW_004936661:1,793,801...1,806,579
G
Hnrnpm
heterogeneous nuclear ribonucleoprotein M
ISO
RGD
PMID:17537823 PMID:19239890
RGD:9686089 RGD:9686091
NCBI chrNW_004936588:5,241,276...5,283,952
Ensembl chrNW_004936588:5,222,509...5,239,890 Ensembl chrNW_004936588:5,222,509...5,239,890
G
Hnrnpr
heterogeneous nuclear ribonucleoprotein R
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chrNW_004936474:8,531,434...8,567,734
Ensembl chrNW_004936474:8,531,434...8,567,767
G
Hnrnpu
heterogeneous nuclear ribonucleoprotein U
ISO
RGD
PMID:17537823 PMID:19239890
RGD:9686089 RGD:9686091
NCBI chrNW_004936526:6,014,745...6,022,213
G
Hspa8
heat shock protein family A (Hsp70) member 8
ISO
RGD
PMID:23742842
RGD:9686094
NCBI chrNW_004936542:7,577,192...7,581,598
Ensembl chrNW_004936542:7,577,149...7,581,923
G
Lsm2
LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated
ISO
RGD
PMID:17537823 PMID:19239890
RGD:9686089 RGD:9686091
NCBI chrNW_004936727:1,746,072...1,751,944
Ensembl chrNW_004936727:1,745,942...1,751,959
G
Lsm3
LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated
ISO
RGD
PMID:17537823 PMID:19239890
RGD:9686089 RGD:9686091
NCBI chrNW_004936602:140,014...147,000
Ensembl chrNW_004936602:140,004...147,035
G
Lsm4
LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated
ISO
RGD
PMID:17537823 PMID:19239890
RGD:9686089 RGD:9686091
NCBI chrNW_004936596:2,903,363...2,916,629
Ensembl chrNW_004936596:2,903,358...2,916,629
G
Lsm5
LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated
ISO
RGD
PMID:17537823 PMID:19239890
RGD:9686089 RGD:9686091
NCBI chrNW_004936478:8,541,293...8,545,280
Ensembl chrNW_004936478:8,540,330...8,545,348
G
Lsm6
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated
ISO
RGD
PMID:17537823 PMID:19239890
RGD:9686089 RGD:9686091
NCBI chrNW_004936535:3,089,778...3,103,342
Ensembl chrNW_004936535:3,089,779...3,103,310
G
Lsm7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated
ISO
RGD
PMID:17537823 PMID:19239890
RGD:9686089 RGD:9686091
NCBI chrNW_004936588:1,390,456...1,393,940
Ensembl chrNW_004936588:1,390,459...1,394,004
G
Lsm8
LSM8 homolog, U6 small nuclear RNA associated
ISO
RGD
PMID:17537823 PMID:19239890
RGD:9686089 RGD:9686091
NCBI chrNW_004936589:1,107,534...1,113,439
Ensembl chrNW_004936589:1,105,341...1,113,452
G
Magohb
mago homolog B, exon junction complex subunit
ISO
RGD
PMID:15145352
RGD:9686404
NCBI chrNW_004937158:128,190...157,130
G
Mbnl1
muscleblind like splicing regulator 1
ISO
RGD
PMID:23498935
RGD:9686382
NCBI chrNW_004936519:419,332...580,706
Ensembl chrNW_004936519:419,571...580,730
G
Plrg1
pleiotropic regulator 1
ISO
RGD
PMID:23742842
RGD:9686094
NCBI chrNW_004936576:1,284,758...1,297,758
Ensembl chrNW_004936576:1,282,664...1,297,818
G
Pnn
pinin, desmosome associated protein
ISO
RGD
PMID:15145352
RGD:9686404
NCBI chrNW_004936494:12,762,175...12,769,986
G
Ppie
peptidylprolyl isomerase E
ISO
RGD
PMID:18544344 PMID:23742842
RGD:9686094 RGD:9686376
NCBI chrNW_004936474:21,602,555...21,616,857
Ensembl chrNW_004936474:21,602,521...21,619,655
G
Ppig
peptidylprolyl isomerase G
ISO
RGD
PMID:18544344
RGD:9686376
NCBI chrNW_004936509:117,613...172,109
Ensembl chrNW_004936509:117,921...172,100
G
Ppih
peptidylprolyl isomerase H
ISO
RGD
PMID:18544344
RGD:9686376
NCBI chrNW_004936474:24,003,963...24,024,885
Ensembl chrNW_004936474:24,003,827...24,024,922
G
Ppil1
peptidylprolyl isomerase like 1
ISO
RGD
PMID:18544344 PMID:23742842
RGD:9686094 RGD:9686376
NCBI chrNW_004936476:22,552,484...22,570,860
Ensembl chrNW_004936476:22,552,566...22,571,001
G
Ppil2
peptidylprolyl isomerase like 2
ISO
RGD
PMID:18544344
RGD:9686376
NCBI chrNW_004936619:1,983,602...2,026,494
Ensembl chrNW_004936619:1,981,214...2,027,074
G
Ppil3
peptidylprolyl isomerase like 3
ISO
RGD
PMID:18544344
RGD:9686376
NCBI chrNW_004936726:181,128...194,823
Ensembl chrNW_004936726:181,140...194,821
G
Prpf18
pre-mRNA processing factor 18
ISO
RGD
PMID:24452469
RGD:9686092
NCBI chrNW_004936613:364,492...401,402
Ensembl chrNW_004936613:364,462...401,402
G
Prpf19
pre-mRNA processing factor 19
ISO
RGD
PMID:23742842
RGD:9686094
NCBI chrNW_004936581:2,031,894...2,042,294
Ensembl chrNW_004936581:2,031,822...2,042,424
G
Prpf3
pre-mRNA processing factor 3
ISO
RGD
PMID:19239890
RGD:9686089
NCBI chrNW_004936580:604,709...632,788
Ensembl chrNW_004936580:605,138...633,104
G
Prpf31
pre-mRNA processing factor 31
ISO
RGD
PMID:19239890
RGD:9686089
NCBI chrNW_004936994:239,688...252,269
Ensembl chrNW_004936994:239,682...252,317
G
Prpf4
pre-mRNA splicing tri-snRNP complex factor PRPF4
ISO
RGD
PMID:19239890
RGD:9686089
NCBI chrNW_004936559:305,443...321,051
Ensembl chrNW_004936559:305,392...321,080
G
Prpf6
pre-mRNA processing factor 6
ISO
RGD
PMID:19239890
RGD:9686089
NCBI chrNW_004936514:11,175,410...11,220,928
Ensembl chrNW_004936514:11,175,526...11,220,241
G
Prpf8
pre-mRNA processing factor 8
ISO
RGD
PMID:23592432
RGD:9686090
NCBI chrNW_004936538:7,780,022...7,814,575
Ensembl chrNW_004936538:7,780,022...7,814,575
G
Ptbp1
polypyrimidine tract binding protein 1
ISO
RGD
PMID:23385723
RGD:9686381
NCBI chrNW_004936588:316,348...326,895
Ensembl chrNW_004936588:316,167...327,044
G
Ptbp2
polypyrimidine tract binding protein 2
ISO
RGD
PMID:23498935
RGD:9686382
NCBI chrNW_004936537:2,676,920...2,748,568
Ensembl chrNW_004936537:2,676,130...2,747,524
G
Qki
QKI, KH domain containing RNA binding
ISO
RGD
PMID:23385723
RGD:9686381
NCBI chrNW_004936489:13,901,066...14,000,652
Ensembl chrNW_004936489:13,901,754...13,999,983
G
Rbm22
RNA binding motif protein 22
ISO
RGD
PMID:23742842
RGD:9686094
NCBI chrNW_004936504:4,294,010...4,304,669
G
Rbm8a
RNA binding motif protein 8A
ISO
RGD
PMID:15145352
RGD:9686404
NCBI chrNW_004936867:666,208...667,851
Ensembl chrNW_004936867:666,199...667,828
G
Rbmx
RNA binding motif protein X-linked
ISO
RGD
PMID:17537823 PMID:19239890
RGD:9686089 RGD:9686091
NCBI chrNW_004936513:10,429,862...10,442,509
Ensembl chrNW_004936513:10,429,824...10,437,108
G
Rnps1
RNA binding protein with serine rich domain 1
ISO
RGD
PMID:15145352
RGD:9686404
NCBI chrNW_004936694:1,784,396...1,794,269
Ensembl chrNW_004936694:1,784,480...1,793,481
G
Sart3
spliceosome associated factor 3, U4/U6 recycling protein
ISO
RGD
PMID:23592432
RGD:9686090
NCBI chrNW_004936769:450,919...490,938
Ensembl chrNW_004936769:450,917...491,210
G
Sf1
splicing factor 1
ISO
RGD
PMID:19239890
RGD:9686089
NCBI chrNW_004936599:4,533,664...4,546,857
Ensembl chrNW_004936599:4,533,795...4,546,853
G
Sf3a1
splicing factor 3a subunit 1
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chrNW_004936904:310,182...328,882
Ensembl chrNW_004936904:309,713...332,684
G
Sf3a2
splicing factor 3a subunit 2
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chrNW_004936588:1,335,143...1,342,573
Ensembl chrNW_004936588:1,335,166...1,342,575
G
Sf3a3
splicing factor 3a subunit 3
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chrNW_004936474:20,092,159...20,116,612
Ensembl chrNW_004936474:20,091,359...20,116,746
G
Sf3b1
splicing factor 3b subunit 1
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chrNW_004936506:1,749,591...1,790,860
Ensembl chrNW_004936506:1,749,563...1,791,739
G
Sf3b2
splicing factor 3b subunit 2
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chrNW_004936599:3,477,882...3,494,366
Ensembl chrNW_004936599:3,477,589...3,494,354
G
Sf3b3
splicing factor 3b subunit 3
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chrNW_004936475:23,038,424...23,086,134
Ensembl chrNW_004936475:23,037,687...23,086,188
G
Sf3b4
splicing factor 3b subunit 4
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chrNW_004936580:260,013...265,057
G
Sf3b5
splicing factor 3b subunit 5
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chrNW_004936625:2,151,018...2,151,743
Ensembl chrNW_004936625:2,151,153...2,151,413
G
Sf3b6
splicing factor 3b subunit 6
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chrNW_004936493:7,906,701...7,912,777
Ensembl chrNW_004936493:7,906,701...7,912,438
G
Slu7
SLU7 homolog, splicing factor
ISO
RGD
PMID:24452469
RGD:9686092
NCBI chrNW_004936515:3,172,962...3,179,915
Ensembl chrNW_004936515:3,168,838...3,178,588
G
Snrnp70
small nuclear ribonucleoprotein U1 subunit 70
ISO
RGD
PMID:23592432
RGD:9686090
NCBI chrNW_004936664:3,035,679...3,054,577
G
Snrpa
small nuclear ribonucleoprotein polypeptide A
ISO
RGD
PMID:23592432
RGD:9686090
NCBI chrNW_004936661:3,030,104...3,041,877
Ensembl chrNW_004936661:3,029,802...3,041,877
G
Snrpa1
small nuclear ribonucleoprotein polypeptide A'
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chrNW_004936483:2,572,520...2,582,297
Ensembl chrNW_004936483:2,572,491...2,582,492
G
Snrpb
small nuclear ribonucleoprotein polypeptides B and B1
ISO
RGD
PMID:17537823 PMID:19239890
RGD:9686089 RGD:9686091
NCBI chrNW_004936485:16,142,231...16,161,761
Ensembl chrNW_004936485:16,157,485...16,163,698
G
Snrpb2
small nuclear ribonucleoprotein polypeptide B2
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chrNW_004936485:3,296,350...3,305,985
G
Snrpc
small nuclear ribonucleoprotein polypeptide C
ISO
RGD
PMID:23592432
RGD:9686090
NCBI chrNW_004936476:24,371,268...24,389,355
Ensembl chrNW_004936476:24,368,521...24,389,596
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Snrpd1
small nuclear ribonucleoprotein D1 polypeptide
ISO
RGD
PMID:17537823 PMID:19239890
RGD:9686089 RGD:9686091
NCBI chrNW_004936550:1,323,351...1,335,074
Ensembl chrNW_004936550:1,323,378...1,335,069
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Snrpd2
small nuclear ribonucleoprotein D2 polypeptide
ISO
RGD
PMID:17537823 PMID:19239890
RGD:9686089 RGD:9686091
NCBI chrNW_004936706:2,065,315...2,068,709
Ensembl chrNW_004936706:2,065,419...2,067,487
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Snrpd3
small nuclear ribonucleoprotein D3 polypeptide
ISO
RGD
PMID:17537823 PMID:19239890
RGD:9686089 RGD:9686091
NCBI chrNW_004936619:728,759...744,367
Ensembl chrNW_004936619:728,114...745,551
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Snrpe
small nuclear ribonucleoprotein polypeptide E
ISO
RGD
PMID:17537823 PMID:19239890
RGD:9686089 RGD:9686091
NCBI chrNW_004936567:849,300...855,214
Ensembl chrNW_004936567:849,397...855,187
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Snrpf
small nuclear ribonucleoprotein polypeptide F
ISO
RGD
PMID:17537823 PMID:19239890
RGD:9686089 RGD:9686091
NCBI chrNW_004936507:11,973,818...11,980,370
Ensembl chrNW_004936507:11,973,564...11,982,283
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Snrpg
small nuclear ribonucleoprotein polypeptide G
ISO
RGD
PMID:17537823 PMID:19239890
RGD:9686089 RGD:9686091
NCBI chrNW_004936491:14,442,904...14,450,717
Ensembl chrNW_004936491:14,443,026...14,450,631
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Snu13
small nuclear ribonucleoprotein 13
ISO
RGD
PMID:19239890
RGD:9686089
NCBI chrNW_004936492:289,834...295,883
Ensembl chrNW_004936492:289,770...297,670
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Snw1
SNW domain containing 1
ISO
RGD
PMID:23742842
RGD:9686094
NCBI chrNW_004936488:6,494,556...6,531,297
Ensembl chrNW_004936488:6,494,562...6,531,600
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Srrm1
serine and arginine repetitive matrix 1
ISO
RGD
PMID:15145352 PMID:17537823
RGD:9686091 RGD:9686404
NCBI chrNW_004936474:9,573,015...9,602,229
Ensembl chrNW_004936474:9,572,974...9,602,229
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Srrm2
serine/arginine repetitive matrix 2
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chrNW_004936694:1,280,104...1,296,301
Ensembl chrNW_004936694:1,280,155...1,295,779
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Srrm4
serine/arginine repetitive matrix 4
ISO
RGD
PMID:23498935
RGD:9686382
NCBI chrNW_004936668:1,523,232...1,668,591
Ensembl chrNW_004936668:1,525,289...1,562,064
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Srsf1
serine and arginine rich splicing factor 1
ISO
RGD
PMID:17537823 PMID:19239890
RGD:9686089 RGD:9686091
NCBI chrNW_004936490:5,055,258...5,059,118
Ensembl chrNW_004936490:5,055,253...5,059,116
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Srsf10
serine and arginine rich splicing factor 10
ISO
RGD
PMID:17537823 PMID:19239890
RGD:9686089 RGD:9686091
NCBI chrNW_004936474:9,068,012...9,079,717
Ensembl chrNW_004936474:9,066,103...9,079,780
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Srsf11
serine and arginine rich splicing factor 11
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chrNW_004936591:1,789,358...1,825,854
Ensembl chrNW_004936591:1,789,366...1,816,342
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Srsf12
serine and arginine rich splicing factor 12
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chrNW_004936510:3,077,940...3,095,985
Ensembl chrNW_004936510:3,077,892...3,095,832
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Srsf2
serine and arginine rich splicing factor 2
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chrNW_004936594:1,775,412...1,778,389
Ensembl chrNW_004936594:1,777,376...1,778,164
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Srsf3
serine and arginine rich splicing factor 3
ISO
RGD
PMID:17537823 PMID:19239890
RGD:9686089 RGD:9686091
NCBI chrNW_004936476:22,790,411...22,799,498
Ensembl chrNW_004936476:22,790,411...22,799,452
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Srsf4
serine and arginine rich splicing factor 4
ISO
RGD
PMID:17537823 PMID:19239890
RGD:9686089 RGD:9686091
NCBI chrNW_004936474:13,113,191...13,140,956
Ensembl chrNW_004936474:13,113,867...13,140,599
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Srsf5
serine and arginine rich splicing factor 5
ISO
RGD
PMID:17537823 PMID:19239890
RGD:9686089 RGD:9686091
NCBI chrNW_004936495:12,952,610...12,957,640
Ensembl chrNW_004936495:12,952,646...12,960,681
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Srsf6
serine and arginine rich splicing factor 6
ISO
RGD
PMID:17537823 PMID:19239890
RGD:9686089 RGD:9686091
NCBI chrNW_004936530:3,086,944...3,092,780
Ensembl chrNW_004936530:3,086,680...3,092,828
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Srsf7
serine and arginine rich splicing factor 7
ISO
RGD
PMID:17537823 PMID:19239890
RGD:9686089 RGD:9686091
NCBI chrNW_004936508:12,475,906...12,481,501
Ensembl chrNW_004936508:12,475,661...12,481,501
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Srsf9
serine and arginine rich splicing factor 9
ISO
RGD
PMID:17537823 PMID:19239890
RGD:9686089 RGD:9686091
NCBI chrNW_004936668:484,922...491,576
Ensembl chrNW_004936668:484,917...495,699
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Syf2
SYF2 pre-mRNA splicing factor
ISO
RGD
PMID:23742842
RGD:9686094
NCBI chrNW_004936474:9,970,047...9,975,260
Ensembl chrNW_004936474:9,968,469...9,972,799
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Syncrip
synaptotagmin binding cytoplasmic RNA interacting protein
ISO
RGD
PMID:17537823
RGD:9686091
NCBI chrNW_004936510:5,643,072...5,672,258
Ensembl chrNW_004936510:5,643,044...5,672,255
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Tial1
TIA1 cytotoxic granule associated RNA binding protein like 1
ISO
RGD
PMID:23385723
RGD:9686381
NCBI chrNW_004936486:8,925,819...8,947,872
Ensembl chrNW_004936486:8,924,738...8,947,877
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Txnl4a
thioredoxin like 4A
ISO
RGD
PMID:19239890
RGD:9686089
NCBI chrNW_004936616:220,255...232,042
Ensembl chrNW_004936616:220,274...234,870
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U2af1
U2 small nuclear RNA auxiliary factor 1
ISO
RGD
PMID:19239890
RGD:9686089
NCBI chrNW_004936500:937,537...967,791
Ensembl chrNW_004936500:958,256...967,829
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U2af2
U2 small nuclear RNA auxiliary factor 2
ISO
RGD
PMID:19239890
RGD:9686089
NCBI chrNW_004936981:176,552...193,798
Ensembl chrNW_004936981:176,647...193,152
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Xab2
XPA binding protein 2
ISO
RGD
PMID:23742842
RGD:9686094
NCBI chrNW_004936588:4,670,866...4,679,888
Ensembl chrNW_004936588:4,670,841...4,679,965
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all