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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:RNA polymerase II transcription pathway
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Accession:PW:0000127 term browser browse the term
Definition:The series of events governing the synthesis of protein-coding messenger RNA (mRNA) precursors and of transcripts of many classes of non-coding genes.
Synonyms:related_synonym: RNA Polymerase II Transcription;   transcription by RNA polymerase II

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RNA polymerase II transcription pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCNC cyclin C ISO RGD PMID:24088064 RGD:9681732 NCBI chr 1:66,472,622...66,499,754
Ensembl chr 1:66,471,782...66,499,188
JBrowse link
G CDC14A cell division cycle 14A ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737 RGD:9681738 NCBI chr 4:117,635,849...117,804,568
Ensembl chr 4:117,635,861...117,805,254
JBrowse link
G CDC14B cell division cycle 14B ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737 RGD:9681738 NCBI chr10:25,471,976...25,590,022 JBrowse link
G CDK12 cyclin dependent kinase 12 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737 RGD:9681738 NCBI chr12:22,755,365...22,831,397
Ensembl chr12:22,775,226...22,831,333
JBrowse link
G CDK19 cyclin dependent kinase 19 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 1:76,589,050...76,793,476
Ensembl chr 1:76,589,052...76,793,278
JBrowse link
G CDK7 cyclin dependent kinase 7 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737 RGD:9681738 NCBI chr16:47,410,136...47,445,795
Ensembl chr16:47,410,145...47,449,364
JBrowse link
G CDK8 cyclin dependent kinase 8 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 PMID:24088064 RGD:9681732 RGD:9681737 RGD:9681738 NCBI chr11:4,054,442...4,161,501
Ensembl chr11:4,054,442...4,161,481
JBrowse link
G CDK9 cyclin dependent kinase 9 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737 RGD:9681738 NCBI chr 1:268,277,083...268,280,493
Ensembl chr 1:268,276,841...268,281,052
JBrowse link
G CTDP1 CTD phosphatase subunit 1 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737 RGD:9681738 NCBI chr 1:145,769,763...145,811,673
Ensembl chr 1:145,769,771...145,811,678
JBrowse link
G CTDSP1 CTD small phosphatase 1 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737 RGD:9681738 NCBI chr15:120,450,649...120,456,874
Ensembl chr15:120,450,760...120,456,871
JBrowse link
G LOC102164011 DNA-directed RNA polymerases I, II, and III subunit RPABC5-like ISO RGD PMID:22960599 RGD:9588243 NCBI chr 1:109,821,516...109,823,848 JBrowse link
G MED1 mediator complex subunit 1 ISO RGD PMID:24088064 RGD:9681732 NCBI chr12:22,830,405...22,872,420
Ensembl chr12:22,841,205...22,872,409
JBrowse link
G MED10 mediator complex subunit 10 ISO RGD PMID:24088064 RGD:9681732 NCBI chr16:75,516,992...75,524,761
Ensembl chr16:75,517,023...75,524,758
JBrowse link
G MED11 mediator complex subunit 11 ISO RGD PMID:24088064 RGD:9681732 NCBI chr12:52,150,535...52,152,366
Ensembl chr12:52,150,448...52,152,204
JBrowse link
G MED12 mediator complex subunit 12 ISO RGD PMID:24088064 RGD:9681732 NCBI chr  X:57,150,884...57,174,367
Ensembl chr  X:57,150,919...57,175,333
JBrowse link
G MED12L mediator complex subunit 12L ISO RGD PMID:24088064 RGD:9681732 NCBI chr13:91,271,588...91,625,867
Ensembl chr13:91,271,539...91,625,855
JBrowse link
G MED13 mediator complex subunit 13 ISO RGD PMID:24088064 RGD:9681732 NCBI chr12:36,333,741...36,430,740
Ensembl chr12:36,333,191...36,429,291
JBrowse link
G MED13L mediator complex subunit 13L ISO RGD PMID:24088064 RGD:9681732 NCBI chr14:36,061,834...36,384,567
Ensembl chr14:36,063,644...36,383,800
JBrowse link
G MED14 mediator complex subunit 14 ISO RGD PMID:24088064 RGD:9681732 NCBI chr  X:36,354,057...36,424,837
Ensembl chr  X:36,354,061...36,424,715
JBrowse link
G MED15 mediator complex subunit 15 ISO RGD PMID:24088064 RGD:9681732 NCBI chr14:50,703,010...50,759,310
Ensembl chr14:50,703,019...50,759,310
JBrowse link
G MED16 mediator complex subunit 16 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 2:77,490,953...77,526,872
Ensembl chr 2:77,492,501...77,509,796
JBrowse link
G MED17 mediator complex subunit 17 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 9:26,192,206...26,214,177
Ensembl chr 9:26,192,201...26,228,612
JBrowse link
G MED18 mediator complex subunit 18 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 6:85,384,085...85,392,296
Ensembl chr 6:85,384,080...85,392,291
JBrowse link
G MED19 mediator complex subunit 19 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 2:13,241,311...13,250,821
Ensembl chr 2:13,241,455...13,250,820
JBrowse link
G MED20 mediator complex subunit 20 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 7:37,062,555...37,074,150
Ensembl chr 7:37,058,131...37,074,132
JBrowse link
G MED21 mediator complex subunit 21 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 5:46,704,358...46,736,434
Ensembl chr 5:46,725,568...46,736,388
JBrowse link
G MED22 mediator complex subunit 22 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 1:272,956,119...272,961,618
Ensembl chr 1:272,955,473...272,961,596
JBrowse link
G MED23 mediator complex subunit 23 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 1:31,959,934...32,001,591
Ensembl chr 1:31,959,934...32,001,581
JBrowse link
G MED24 mediator complex subunit 24 ISO RGD PMID:24088064 RGD:9681732 NCBI chr12:22,309,004...22,332,203
Ensembl chr12:22,303,258...22,332,199
JBrowse link
G MED25 mediator complex subunit 25 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 6:54,834,303...54,849,539
Ensembl chr 6:54,834,316...54,852,821
JBrowse link
G MED26 mediator complex subunit 26 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 2:60,984,233...61,035,661
Ensembl chr 2:60,984,256...61,035,655
JBrowse link
G MED27 mediator complex subunit 27 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 1:271,724,910...271,928,367
Ensembl chr 1:271,724,910...271,928,367
JBrowse link
G MED28 mediator complex subunit 28 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 8:12,624,096...12,633,251
Ensembl chr 8:12,624,109...12,635,334
JBrowse link
G MED29 mediator complex subunit 29 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 6:48,051,985...48,059,035 JBrowse link
G MED30 mediator complex subunit 30 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 4:21,198,740...21,215,634
Ensembl chr 4:21,198,743...21,215,618
JBrowse link
G MED31 mediator complex subunit 31 ISO RGD PMID:24088064 RGD:9681732 NCBI chr12:50,728,681...50,734,469
Ensembl chr12:50,728,871...50,736,074
JBrowse link
G MED4 mediator complex subunit 4 ISO RGD PMID:24088064 RGD:9681732 NCBI chr11:19,551,858...19,566,915
Ensembl chr11:19,551,863...19,566,926
JBrowse link
G MED6 mediator complex subunit 6 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 7:94,157,624...94,184,606
Ensembl chr 7:94,157,731...94,219,385
JBrowse link
G MED7 mediator complex subunit 7 ISO RGD PMID:24088064 RGD:9681732 NCBI chr16:66,114,596...66,121,096
Ensembl chr16:66,114,930...66,123,780
JBrowse link
G MED8 mediator complex subunit 8 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 6:167,861,349...167,868,560
Ensembl chr 6:167,861,373...167,869,411
JBrowse link
G MED9 mediator complex subunit 9 ISO RGD PMID:24088064 RGD:9681732 NCBI chr12:60,925,161...60,933,999
Ensembl chr12:60,906,718...60,933,944
JBrowse link
G POLR2A RNA polymerase II subunit A ISO RGD PMID:22960599 RGD:9588243 NCBI chr12:52,779,833...52,806,210
Ensembl chr12:52,779,828...52,807,598
JBrowse link
G POLR2B RNA polymerase II subunit B ISO RGD PMID:22960599 RGD:9588243 NCBI chr 8:56,232,730...56,283,367
Ensembl chr 8:56,231,789...56,285,011
JBrowse link
G POLR2C RNA polymerase II subunit C ISO RGD PMID:22960599 RGD:9588243 NCBI chr 6:19,393,569...19,401,119
Ensembl chr 6:19,393,597...19,401,116
JBrowse link
G POLR2D RNA polymerase II subunit D ISO RGD PMID:22960599 RGD:9588243 NCBI chr15:59,479,631...59,495,975
Ensembl chr15:59,479,510...59,498,132
JBrowse link
G POLR2E RNA polymerase II, I and III subunit E ISO RGD PMID:22960599 RGD:9588243 NCBI chr 2:77,330,755...77,341,910
Ensembl chr 2:77,330,686...77,341,900
JBrowse link
G POLR2F RNA polymerase II, I and III subunit F ISO RGD PMID:22960599 RGD:9588243 NCBI chr 5:9,905,359...9,917,721
Ensembl chr 5:9,855,983...9,917,726
JBrowse link
G POLR2G RNA polymerase II subunit G ISO RGD PMID:22960599 RGD:9588243 NCBI chr 2:9,004,388...9,008,631
Ensembl chr 2:9,004,390...9,017,779
JBrowse link
G POLR2H RNA polymerase II, I and III subunit H ISO RGD PMID:22960599 RGD:9588243 NCBI chr13:122,250,087...122,256,201
Ensembl chr13:122,250,020...122,256,195
JBrowse link
G POLR2I RNA polymerase II subunit I ISO RGD PMID:22960599 RGD:9588243 NCBI chr 6:45,480,785...45,482,318
Ensembl chr 6:45,479,555...45,481,990
JBrowse link
G POLR2J RNA polymerase II subunit J ISO RGD PMID:22960599 RGD:9588243 NCBI chr 3:9,812,746...9,816,657
Ensembl chr 3:9,812,441...9,816,656
JBrowse link
G POLR2K RNA polymerase II, I and III subunit K ISO RGD PMID:22960599 RGD:9588243 NCBI chr 4:36,849,729...36,852,622
Ensembl chr 4:36,845,242...36,852,610
JBrowse link
G RPAP2 RNA polymerase II associated protein 2 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737 RGD:9681738 NCBI chr 4:124,691,655...124,773,914
Ensembl chr 4:124,690,317...124,773,887
JBrowse link
G SSU72 SSU72 homolog, RNA polymerase II CTD phosphatase ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737 RGD:9681738 NCBI chr 6:63,728,318...63,757,460
Ensembl chr 6:63,728,325...63,755,163
JBrowse link
3'-end pre-mRNA processing pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLP1 cleavage factor polyribonucleotide kinase subunit 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 2:13,282,157...13,285,208
Ensembl chr 2:13,282,164...13,285,162
JBrowse link
G CPSF1 cleavage and polyadenylation specific factor 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 4:382,887...393,732 JBrowse link
G CPSF2 cleavage and polyadenylation specific factor 2 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 7:113,659,903...113,690,524
Ensembl chr 7:113,659,905...113,693,764
JBrowse link
G CPSF3 cleavage and polyadenylation specific factor 3 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 3:126,868,519...126,905,699
Ensembl chr 3:126,868,467...126,905,746
JBrowse link
G CPSF4 cleavage and polyadenylation specific factor 4 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 3:6,374,346...6,388,662
Ensembl chr 3:6,374,341...6,388,661
JBrowse link
G CPSF6 cleavage and polyadenylation specific factor 6 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 5:33,525,668...33,559,941
Ensembl chr 5:33,525,689...33,555,226
JBrowse link
G CPSF7 cleavage and polyadenylation specific factor 7 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 2:10,087,581...10,112,929
Ensembl chr 2:10,087,632...10,115,076
JBrowse link
G CSTF1 cleavage stimulation factor subunit 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr17:56,972,202...56,984,065
Ensembl chr17:56,972,248...56,985,813
JBrowse link
G CSTF2 cleavage stimulation factor subunit 2 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr  X:82,508,739...82,540,861
Ensembl chr  X:82,508,736...82,540,863
JBrowse link
G CSTF2T cleavage stimulation factor subunit 2 tau variant ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr14:98,104,957...98,109,479
Ensembl chr14:98,105,772...98,110,358
JBrowse link
G CSTF3 cleavage stimulation factor subunit 3 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 2:27,769,457...27,850,382
Ensembl chr 2:27,769,421...27,850,382
JBrowse link
G DXO decapping exoribonuclease ISO RGD PMID:21957020 RGD:9681741 NCBI chr 7:24,057,670...24,060,108
Ensembl chr 7:24,056,525...24,060,011
JBrowse link
G FIP1L1 factor interacting with PAPOLA and CPSF1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 8:40,157,263...40,235,084 JBrowse link
G NUDT21 nudix hydrolase 21 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 6:29,339,893...29,359,596
Ensembl chr 6:29,339,841...29,363,312
JBrowse link
G PABPN1 poly(A) binding protein nuclear 1 ISO RGD PMID:24243805 RGD:9681742 NCBI chr 7:75,752,571...75,756,522
Ensembl chr 7:75,751,760...75,756,700
JBrowse link
G PAPOLA poly(A) polymerase alpha ISO RGD PMID:24243805 RGD:9681742 NCBI chr 7:117,676,083...117,740,348
Ensembl chr 7:117,676,398...117,741,911
JBrowse link
G PAPOLB poly(A) polymerase beta ISO RGD PMID:24243805 RGD:9681742 NCBI chr 3:3,696,416...3,700,986 JBrowse link
G PAPOLG poly(A) polymerase gamma ISO RGD PMID:24243805 RGD:9681742 NCBI chr 3:80,986,395...81,025,369
Ensembl chr 3:80,986,402...81,025,293
JBrowse link
G PCF11 PCF11 cleavage and polyadenylation factor subunit ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 9:17,297,867...17,324,721
Ensembl chr 9:17,297,861...17,324,710
JBrowse link
G SYMPK symplekin scaffold protein ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 6:52,135,580...52,180,382
Ensembl chr 6:52,138,204...52,199,220
JBrowse link
G WDR33 WD repeat domain 33 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr15:59,519,832...59,639,050
Ensembl chr15:59,520,065...59,638,879
JBrowse link
G XRN2 5'-3' exoribonuclease 2 ISO RGD PMID:21957020 RGD:9681741 NCBI chr17:29,107,641...29,193,500
Ensembl chr17:29,107,667...29,193,479
JBrowse link
5'-end pre-mRNA capping pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NCBP1 nuclear cap binding protein subunit 1 ISO RGD PMID:24354960 RGD:9684851 NCBI chr 1:239,492,573...239,543,925
Ensembl chr 1:239,492,721...239,535,825
JBrowse link
G NCBP2 nuclear cap binding protein subunit 2 ISO RGD PMID:24354960 RGD:9684851 NCBI chr13:133,177,209...133,192,935
Ensembl chr13:133,178,166...133,192,923
JBrowse link
G RAMAC RNA guanine-7 methyltransferase activating subunit ISO RGD PMID:24354960 RGD:9684851 NCBI chr 7:51,948,190...51,953,605 JBrowse link
G RNGTT RNA guanylyltransferase and 5'-phosphatase ISO RGD PMID:24354960 RGD:9684851 NCBI chr 1:56,852,864...57,061,985
Ensembl chr 1:56,852,866...57,061,972
JBrowse link
G RNMT RNA guanine-7 methyltransferase ISO RGD PMID:24354960 RGD:9684851 NCBI chr 6:96,338,283...96,362,814
Ensembl chr 6:96,338,288...96,360,169
JBrowse link
RNA polymerase II transcription elongation pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AFF1 ALF transcription elongation factor 1 ISO RGD PMID:22895430 RGD:9681740 NCBI chr 8:131,728,819...131,924,814
Ensembl chr 8:131,728,873...131,924,819
JBrowse link
G AFF4 ALF transcription elongation factor 4 ISO RGD PMID:22895430 RGD:9681740 NCBI chr 2:135,196,067...135,283,931
Ensembl chr 2:135,200,076...135,283,675
JBrowse link
G CCNK cyclin K ISO RGD PMID:24050178 RGD:9681735 NCBI chr 7:120,487,140...120,514,223
Ensembl chr 7:120,487,206...120,514,014
JBrowse link
G CCNT1 cyclin T1 ISO RGD PMID:24050178 RGD:9681735 NCBI chr 5:14,768,423...14,808,424
Ensembl chr 5:14,768,426...14,807,001
JBrowse link
G CCNT2 cyclin T2 ISO RGD PMID:24050178 RGD:9681735 NCBI chr15:16,974,364...17,021,293
Ensembl chr15:16,974,038...17,021,298
JBrowse link
G CDC73 cell division cycle 73 ISO RGD PMID:20060942 RGD:9588246 NCBI chr10:575,075...667,618
Ensembl chr10:575,075...667,432
JBrowse link
G CDK9 cyclin dependent kinase 9 ISO RGD PMID:24050178 RGD:9681735 NCBI chr 1:268,277,083...268,280,493
Ensembl chr 1:268,276,841...268,281,052
JBrowse link
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component ISO RGD PMID:20060942 RGD:9588246 NCBI chr 2:48,700,629...48,729,480
Ensembl chr 2:48,700,643...48,729,516
JBrowse link
G EAF1 ELL associated factor 1 ISO RGD PMID:22895430 RGD:9681740 NCBI chr13:2,654,829...2,671,140
Ensembl chr13:2,654,630...2,671,132
JBrowse link
G EAF2 ELL associated factor 2 ISO RGD PMID:22895430 RGD:9681740 NCBI chr13:138,632,541...138,681,607
Ensembl chr13:138,648,270...138,681,613
JBrowse link
G ELL elongation factor for RNA polymerase II ISO RGD PMID:22895430 RGD:9681740 NCBI chr 2:59,277,164...59,359,986
Ensembl chr 2:59,277,184...59,359,990
JBrowse link
G ELL2 elongation factor for RNA polymerase II 2 ISO RGD PMID:22895430 RGD:9681740 NCBI chr 2:102,518,605...102,591,416
Ensembl chr 2:102,518,608...102,591,394
JBrowse link
G ELL3 elongation factor for RNA polymerase II 3 ISO RGD PMID:22895430 RGD:9681740 NCBI chr 1:127,781,357...127,784,803
Ensembl chr 1:127,781,403...127,784,843
JBrowse link
G GTF2F1 general transcription factor IIF subunit 1 ISO RGD PMID:24050178 RGD:9681735 NCBI chr 2:72,687,612...72,698,274
Ensembl chr 2:72,687,790...72,698,270
JBrowse link
G GTF2F2 general transcription factor IIF subunit 2 ISO RGD PMID:24050178 RGD:9681735 NCBI chr11:21,987,410...22,144,921
Ensembl chr11:21,983,832...22,144,954
JBrowse link
G LEO1 LEO1 homolog, Paf1/RNA polymerase II complex component ISO RGD PMID:20060942 RGD:9588246 NCBI chr 1:119,804,992...119,842,343
Ensembl chr 1:119,805,006...119,859,434
JBrowse link
G MLLT1 MLLT1 super elongation complex subunit ISO RGD PMID:22895430 RGD:9681740 NCBI chr 2:72,780,950...72,847,694
Ensembl chr 2:72,781,121...72,847,685
JBrowse link
G MLLT3 MLLT3 super elongation complex subunit ISO RGD PMID:22895430 RGD:9681740 NCBI chr 1:202,317,458...202,604,308
Ensembl chr 1:202,318,929...202,607,058
JBrowse link
G NCBP1 nuclear cap binding protein subunit 1 ISO RGD PMID:24354960 RGD:9684851 NCBI chr 1:239,492,573...239,543,925
Ensembl chr 1:239,492,721...239,535,825
JBrowse link
G NCBP2 nuclear cap binding protein subunit 2 ISO RGD PMID:24354960 RGD:9684851 NCBI chr13:133,177,209...133,192,935
Ensembl chr13:133,178,166...133,192,923
JBrowse link
G NELFA negative elongation factor complex member A ISO RGD PMID:24050178 RGD:9681735 NCBI chr 8:1,018,443...1,039,091
Ensembl chr 8:1,018,453...1,039,134
JBrowse link
G NELFB negative elongation factor complex member B ISO RGD PMID:24050178 RGD:9681735
G NELFCD negative elongation factor complex member C/D ISO RGD PMID:24050178 RGD:9681735 NCBI chr17:59,129,055...59,141,499
Ensembl chr17:59,129,076...59,141,499
JBrowse link
G NELFE negative elongation factor complex member E ISO RGD PMID:24050178 RGD:9681735 NCBI chr 7:24,040,525...24,046,932
Ensembl chr 7:24,040,525...24,047,025
JBrowse link
G PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component ISO RGD PMID:20060942 RGD:9588246 NCBI chr 6:48,046,487...48,053,631
Ensembl chr 6:48,046,502...48,052,038
JBrowse link
G RNGTT RNA guanylyltransferase and 5'-phosphatase ISO RGD PMID:24354960 RGD:9684851 NCBI chr 1:56,852,864...57,061,985
Ensembl chr 1:56,852,866...57,061,972
JBrowse link
G RTF1 RTF1 homolog, Paf1/RNA polymerase II complex component ISO RGD PMID:20060942 RGD:9588246 NCBI chr 1:129,886,798...129,942,845
Ensembl chr 1:129,886,800...129,943,181
JBrowse link
G SKIC8 SKI8 subunit of superkiller complex ISO RGD PMID:20060942 RGD:9588246 NCBI chr 7:47,641,103...47,661,353
Ensembl chr 7:47,641,162...47,659,866
JBrowse link
G SSRP1 structure specific recognition protein 1 ISO RGD PMID:24050178 RGD:9681735 NCBI chr 2:13,619,666...13,629,233
Ensembl chr 2:13,619,716...13,629,227
JBrowse link
G SUPT16H SPT16 homolog, facilitates chromatin remodeling subunit ISO RGD PMID:24050178 RGD:9681735 NCBI chr 7:77,780,968...77,814,519
Ensembl chr 7:77,781,316...77,814,505
JBrowse link
G SUPT4H1 SPT4 homolog, DSIF elongation factor subunit ISO RGD PMID:24050178 RGD:9681735 NCBI chr12:34,622,775...34,629,681
Ensembl chr12:34,619,729...34,629,646
JBrowse link
G SUPT5H SPT5 homolog, DSIF elongation factor subunit ISO RGD PMID:24050178 RGD:9681735 NCBI chr 6:48,095,001...48,125,120
Ensembl chr 6:48,095,041...48,125,119
JBrowse link
G TCEA1 transcription elongation factor A1 ISO RGD PMID:24050178 RGD:9681735 NCBI chr 4:77,109,555...77,138,324
Ensembl chr 4:77,109,594...77,138,320
JBrowse link
G TCEA2 transcription elongation factor A2 ISO RGD PMID:24050178 RGD:9681735 NCBI chr17:62,866,594...62,888,790
Ensembl chr17:62,866,377...62,888,787
JBrowse link
G TCEA3 transcription elongation factor A3 ISO RGD PMID:24050178 RGD:9681735 NCBI chr 6:81,267,351...81,304,902
Ensembl chr 6:81,267,359...81,304,602
JBrowse link
RNA polymerase II transcription initiation pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATXN7 ataxin 7 ISO RGD PMID:22426530 RGD:9681728 NCBI chr13:45,356,350...45,514,816
Ensembl chr13:45,401,127...45,498,180
JBrowse link
G ATXN7L3 ataxin 7 like 3 ISO RGD PMID:22426530 RGD:9681728 NCBI chr12:19,012,324...19,020,136
Ensembl chr12:19,012,743...19,018,789
JBrowse link
G CCNH cyclin H ISO RGD PMID:21592869 RGD:9681726 NCBI chr 2:94,980,938...95,019,053
Ensembl chr 2:94,980,941...95,018,634
JBrowse link
G CDK7 cyclin dependent kinase 7 ISO RGD PMID:21592869 RGD:9681726 NCBI chr16:47,410,136...47,445,795
Ensembl chr16:47,410,145...47,449,364
JBrowse link
G DR1 down-regulator of transcription 1 ISO RGD PMID:22426530 RGD:9681728 NCBI chr 4:123,815,088...123,835,875
Ensembl chr 4:123,815,461...123,835,825
JBrowse link
G ENY2 ENY2 transcription and export complex 2 subunit ISO RGD PMID:22426530 RGD:9681728 NCBI chr 4:28,193,631...28,203,549
Ensembl chr 4:28,191,162...28,203,485
JBrowse link
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit ISO RGD PMID:21592869 RGD:9681726 NCBI chr 6:51,734,318...51,757,508
Ensembl chr 6:51,734,320...51,757,553
JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit ISO RGD PMID:21592869 RGD:9681726 NCBI chr15:25,189,644...25,224,381
Ensembl chr15:25,189,663...25,228,066
JBrowse link
G ERCC5 ERCC excision repair 5, endonuclease ISO RGD PMID:21592869 RGD:9681726 NCBI chr11:71,141,823...71,168,326
Ensembl chr11:71,141,842...71,168,322
JBrowse link
G GTF2A1 general transcription factor IIA subunit 1 ISO RGD PMID:24120742 RGD:9681721 NCBI chr 7:103,963,863...104,009,318
Ensembl chr 7:103,963,248...104,009,226
JBrowse link
G GTF2A2 general transcription factor IIA subunit 2 ISO RGD PMID:24120742 RGD:9681721 NCBI chr 1:112,371,276...112,399,541
Ensembl chr 1:112,390,594...112,402,265
JBrowse link
G GTF2B general transcription factor IIB ISO RGD PMID:24120742 RGD:9681721 NCBI chr 4:127,522,802...127,559,605
Ensembl chr 4:127,522,870...127,561,135
JBrowse link
G GTF2E1 general transcription factor IIE subunit 1 ISO RGD PMID:24120742 RGD:9681721 NCBI chr13:139,565,891...139,609,483
Ensembl chr13:139,565,908...139,609,447
JBrowse link
G GTF2E2 general transcription factor IIE subunit 2 ISO RGD PMID:24120742 RGD:9681721 NCBI chr15:54,444,480...54,525,566
Ensembl chr15:54,444,470...54,531,213
JBrowse link
G GTF2F1 general transcription factor IIF subunit 1 ISO RGD PMID:24120742 RGD:9681721 NCBI chr 2:72,687,612...72,698,274
Ensembl chr 2:72,687,790...72,698,270
JBrowse link
G GTF2F2 general transcription factor IIF subunit 2 ISO RGD PMID:24120742 RGD:9681721 NCBI chr11:21,987,410...22,144,921
Ensembl chr11:21,983,832...22,144,954
JBrowse link
G GTF2H1 general transcription factor IIH subunit 1 ISO RGD PMID:21592869 RGD:9681726 NCBI chr 2:40,857,720...40,900,591
Ensembl chr 2:40,857,723...40,900,624
JBrowse link
G GTF2H3 general transcription factor IIH subunit 3 ISO RGD PMID:21592869 RGD:9681726 NCBI chr14:29,335,715...29,355,465
Ensembl chr14:29,335,582...29,355,435
JBrowse link
G GTF2H4 general transcription factor IIH subunit 4 ISO RGD PMID:21592869 RGD:9681726 NCBI chr 7:23,398,414...23,404,268
Ensembl chr 7:23,398,449...23,404,260
JBrowse link
G GTF2H5 general transcription factor IIH subunit 5 ISO RGD PMID:21592869 RGD:9681726 NCBI chr 1:8,928,280...8,935,030
Ensembl chr 1:8,917,240...8,934,983
JBrowse link
G HCFC2 host cell factor C2 ISO RGD PMID:22426530 RGD:9681728 NCBI chr 5:80,366,826...80,409,798
Ensembl chr 5:80,368,240...80,409,775
JBrowse link
G KAT14 lysine acetyltransferase 14 ISO RGD PMID:22426530 RGD:9681728 NCBI chr17:26,484,957...26,521,532
Ensembl chr17:26,485,157...26,521,525
JBrowse link
G KAT2A lysine acetyltransferase 2A ISO RGD PMID:22426530 RGD:9681728 NCBI chr12:20,638,493...20,647,464
Ensembl chr12:20,638,497...20,647,461
JBrowse link
G KAT2B lysine acetyltransferase 2B ISO RGD PMID:22426530 RGD:9681728 NCBI chr13:6,985,151...7,099,771
Ensembl chr13:6,985,235...7,100,345
JBrowse link
G MBIP MAP3K12 binding inhibitory protein 1 ISO RGD PMID:22426530 RGD:9681728 NCBI chr 7:63,659,223...63,684,545
Ensembl chr 7:63,659,232...63,687,552
JBrowse link
G MNAT1 MNAT1 component of CDK activating kinase ISO RGD PMID:21592869 RGD:9681726 NCBI chr 1:189,690,343...189,908,144
Ensembl chr 1:189,690,354...189,910,589
JBrowse link
G POLE3 DNA polymerase epsilon 3, accessory subunit ISO RGD PMID:22426530 RGD:9681728 NCBI chr 1:254,033,378...254,036,224
Ensembl chr 1:254,033,385...254,035,978
JBrowse link
G SGF29 SAGA complex associated factor 29 ISO RGD PMID:22426530 RGD:9681728 NCBI chr 3:18,354,798...18,387,930
Ensembl chr 3:18,354,799...18,387,856
JBrowse link
G SUPT20H SPT20 homolog, SAGA complex component ISO RGD PMID:22426530 RGD:9681728 NCBI chr11:12,825,758...12,864,935
Ensembl chr11:12,825,762...12,864,929
JBrowse link
G SUPT3H SPT3 homolog, SAGA and STAGA complex component ISO RGD PMID:22426530 RGD:9681728 NCBI chr 7:39,763,303...40,161,123
Ensembl chr 7:39,751,927...40,161,103
JBrowse link
G SUPT7L SPT7 like, STAGA complex subunit gamma ISO RGD PMID:22426530 RGD:9681728 NCBI chr 3:111,531,670...111,542,000
Ensembl chr 3:111,531,689...111,542,000
JBrowse link
G TADA1 transcriptional adaptor 1 ISO RGD PMID:22426530 RGD:9681728 NCBI chr 4:84,174,481...84,190,077
Ensembl chr 4:84,174,476...84,187,514
JBrowse link
G TADA2A transcriptional adaptor 2A ISO RGD PMID:22426530 RGD:9681728 NCBI chr12:38,875,156...38,928,011
Ensembl chr12:38,875,250...38,928,005
JBrowse link
G TADA2B transcriptional adaptor 2B ISO RGD PMID:22426530 RGD:9681728 NCBI chr 8:3,815,056...3,828,113
Ensembl chr 8:3,812,257...3,828,108
JBrowse link
G TADA3 transcriptional adaptor 3 ISO RGD PMID:22426530 RGD:9681728 NCBI chr13:66,067,623...66,080,170
Ensembl chr13:66,067,632...66,080,023
JBrowse link
G TAF1 TATA-box binding protein associated factor 1 ISO RGD PMID:23146842 RGD:9681723 NCBI chr  X:57,382,211...57,466,700
Ensembl chr  X:57,382,354...57,466,697
JBrowse link
G TAF10 TATA-box binding protein associated factor 10 ISO RGD PMID:22426530 PMID:23146842 RGD:9681723 RGD:9681728 NCBI chr 9:3,144,262...3,145,702
Ensembl chr 9:3,144,277...3,145,720
JBrowse link
G TAF11 TATA-box binding protein associated factor 11 ISO RGD PMID:23146842 RGD:9681723 NCBI chr 7:30,799,992...30,811,771
Ensembl chr 7:30,799,965...30,811,768
JBrowse link
G TAF12 TATA-box binding protein associated factor 12 ISO RGD PMID:22426530 PMID:23146842 RGD:9681723 RGD:9681728 NCBI chr 6:85,618,679...85,643,087
Ensembl chr 6:85,618,691...85,643,075
JBrowse link
G TAF13 TATA-box binding protein associated factor 13 ISO RGD PMID:23146842 RGD:9681723 NCBI chr 4:110,980,816...110,991,941
Ensembl chr 4:110,971,573...110,992,018
JBrowse link
G TAF15 TATA-box binding protein associated factor 15 ISO RGD PMID:23146842 RGD:9681723 NCBI chr12:39,687,171...39,716,761
Ensembl chr12:39,686,884...39,724,769
JBrowse link
G TAF2 TATA-box binding protein associated factor 2 ISO RGD PMID:23146842 RGD:9681723 NCBI chr 4:19,180,215...19,267,416
Ensembl chr 4:19,180,320...19,267,071
JBrowse link
G TAF3 TATA-box binding protein associated factor 3 ISO RGD PMID:23146842 RGD:9681723 NCBI chr10:63,422,184...63,576,400
Ensembl chr10:63,422,204...63,576,378
JBrowse link
G TAF4 TATA-box binding protein associated factor 4 ISO RGD PMID:23146842 RGD:9681723 NCBI chr17:61,465,820...61,529,963
Ensembl chr17:61,465,822...61,529,890
JBrowse link
G TAF5 TATA-box binding protein associated factor 5 ISO RGD PMID:23146842 RGD:9681723 NCBI chr14:114,304,563...114,321,624
Ensembl chr14:114,304,557...114,321,626
JBrowse link
G TAF5L TATA-box binding protein associated factor 5 like ISO RGD PMID:22426530 RGD:9681728 NCBI chr14:60,254,502...60,286,368
Ensembl chr14:60,255,375...60,286,349
JBrowse link
G TAF6 TATA-box binding protein associated factor 6 ISO RGD PMID:23146842 RGD:9681723 NCBI chr 3:8,017,675...8,026,982
Ensembl chr 3:8,017,675...8,026,888
JBrowse link
G TAF6L TATA-box binding protein associated factor 6 like ISO RGD PMID:22426530 RGD:9681728 NCBI chr 2:8,983,823...8,999,990
Ensembl chr 2:8,985,628...9,000,121
JBrowse link
G TAF7 TATA-box binding protein associated factor 7 ISO RGD PMID:23146842 RGD:9681723 NCBI chr 2:142,949,271...142,952,611
Ensembl chr 2:142,947,343...142,952,505
JBrowse link
G TAF8 TATA-box binding protein associated factor 8 ISO RGD PMID:23146842 RGD:9681723 NCBI chr 7:37,179,270...37,209,588
Ensembl chr 7:37,180,828...37,204,690
JBrowse link
G TAF9 TATA-box binding protein associated factor 9 ISO RGD PMID:22426530 PMID:23146842 RGD:9681723 RGD:9681728 NCBI chr16:47,494,841...47,499,568
Ensembl chr16:47,490,027...47,495,880
JBrowse link
G TBP TATA-box binding protein ISO RGD PMID:23146842 PMID:24120742 RGD:9681721 RGD:9681723 NCBI chr 1:5,669...23,675 JBrowse link
G TRRAP transformation/transcription domain associated protein ISO RGD PMID:22426530 RGD:9681728 NCBI chr 3:5,903,205...6,029,343
Ensembl chr 3:5,909,022...6,029,333
JBrowse link
G USP22 ubiquitin specific peptidase 22 ISO RGD PMID:22426530 RGD:9681728 NCBI chr12:61,273,939...61,308,381
Ensembl chr12:61,271,641...61,308,270
JBrowse link
G WDR5 WD repeat domain 5 ISO RGD PMID:22426530 RGD:9681728 NCBI chr 1:273,560,274...273,577,827
Ensembl chr 1:273,560,283...273,578,063
JBrowse link
G YEATS2 YEATS domain containing 2 ISO RGD PMID:22426530 RGD:9681728 NCBI chr13:121,637,823...121,746,131
Ensembl chr13:121,637,874...121,746,122
JBrowse link
G ZZZ3 zinc finger ZZ-type containing 3 ISO RGD PMID:22426530 RGD:9681728 NCBI chr 6:135,605,712...135,746,019
Ensembl chr 6:135,606,192...135,741,487
JBrowse link
RNA polymerase II transcription termination pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLP1 cleavage factor polyribonucleotide kinase subunit 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 2:13,282,157...13,285,208
Ensembl chr 2:13,282,164...13,285,162
JBrowse link
G CPSF1 cleavage and polyadenylation specific factor 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 4:382,887...393,732 JBrowse link
G CPSF2 cleavage and polyadenylation specific factor 2 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 7:113,659,903...113,690,524
Ensembl chr 7:113,659,905...113,693,764
JBrowse link
G CPSF3 cleavage and polyadenylation specific factor 3 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 3:126,868,519...126,905,699
Ensembl chr 3:126,868,467...126,905,746
JBrowse link
G CPSF4 cleavage and polyadenylation specific factor 4 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 3:6,374,346...6,388,662
Ensembl chr 3:6,374,341...6,388,661
JBrowse link
G CPSF6 cleavage and polyadenylation specific factor 6 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 5:33,525,668...33,559,941
Ensembl chr 5:33,525,689...33,555,226
JBrowse link
G CPSF7 cleavage and polyadenylation specific factor 7 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 2:10,087,581...10,112,929
Ensembl chr 2:10,087,632...10,115,076
JBrowse link
G CSTF1 cleavage stimulation factor subunit 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr17:56,972,202...56,984,065
Ensembl chr17:56,972,248...56,985,813
JBrowse link
G CSTF2 cleavage stimulation factor subunit 2 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr  X:82,508,739...82,540,861
Ensembl chr  X:82,508,736...82,540,863
JBrowse link
G CSTF2T cleavage stimulation factor subunit 2 tau variant ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr14:98,104,957...98,109,479
Ensembl chr14:98,105,772...98,110,358
JBrowse link
G CSTF3 cleavage stimulation factor subunit 3 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 2:27,769,457...27,850,382
Ensembl chr 2:27,769,421...27,850,382
JBrowse link
G DXO decapping exoribonuclease ISO RGD PMID:21957020 RGD:9681741 NCBI chr 7:24,057,670...24,060,108
Ensembl chr 7:24,056,525...24,060,011
JBrowse link
G FIP1L1 factor interacting with PAPOLA and CPSF1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 8:40,157,263...40,235,084 JBrowse link
G NUDT21 nudix hydrolase 21 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 6:29,339,893...29,359,596
Ensembl chr 6:29,339,841...29,363,312
JBrowse link
G PCF11 PCF11 cleavage and polyadenylation factor subunit ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 9:17,297,867...17,324,721
Ensembl chr 9:17,297,861...17,324,710
JBrowse link
G SYMPK symplekin scaffold protein ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 6:52,135,580...52,180,382
Ensembl chr 6:52,138,204...52,199,220
JBrowse link
G WDR33 WD repeat domain 33 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr15:59,519,832...59,639,050
Ensembl chr15:59,520,065...59,638,879
JBrowse link
G XRN2 5'-3' exoribonuclease 2 ISO RGD PMID:21957020 RGD:9681741 NCBI chr17:29,107,641...29,193,500
Ensembl chr17:29,107,667...29,193,479
JBrowse link
spliceosome pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AAR2 AAR2 splicing factor ISO RGD PMID:23592432 RGD:9686090 NCBI chr17:39,498,682...39,521,195
Ensembl chr17:39,498,730...39,522,695
JBrowse link
G AQR aquarius intron-binding spliceosomal factor ISO RGD PMID:23742842 RGD:9686094 NCBI chr 1:136,135,854...136,235,538
Ensembl chr 1:136,121,111...136,233,825
JBrowse link
G BCAS2 BCAS2 pre-mRNA processing factor ISO RGD PMID:23742842 RGD:9686094 NCBI chr 4:105,992,558...106,003,160
Ensembl chr 4:105,992,452...106,003,150
JBrowse link
G BUD31 BUD31 homolog ISO RGD PMID:23742842 RGD:9686094 NCBI chr 3:6,355,249...6,361,211
Ensembl chr 3:6,355,244...6,361,207
JBrowse link
G CCDC12 coiled-coil domain containing 12 ISO RGD PMID:23742842 RGD:9686094 NCBI chr13:29,785,581...29,846,683
Ensembl chr13:29,786,091...29,846,688
JBrowse link
G CDC5L cell division cycle 5 like ISO RGD PMID:23742842 RGD:9686094 NCBI chr 7:39,384,397...39,427,729
Ensembl chr 7:39,384,556...39,431,248
JBrowse link
G CRNKL1 crooked neck pre-mRNA splicing factor 1 ISO RGD PMID:23742842 RGD:9686094 NCBI chr17:28,079,541...28,111,871
Ensembl chr17:28,077,707...28,111,558
JBrowse link
G CTNNBL1 catenin beta like 1 ISO RGD PMID:23742842 RGD:9686094 NCBI chr17:40,809,932...40,948,844
Ensembl chr17:40,774,720...40,949,022
JBrowse link
G CWC15 CWC15 spliceosome associated protein homolog ISO RGD PMID:23742842 RGD:9686094 NCBI chr 9:27,035,501...27,047,280
Ensembl chr 9:27,035,510...27,047,224
JBrowse link
G DDX23 DEAD-box helicase 23 ISO RGD PMID:19239890 PMID:23454554 RGD:9686089 RGD:9686093 NCBI chr 5:14,888,951...14,909,741
Ensembl chr 5:14,888,958...14,899,174
JBrowse link
G DDX39B DExD-box helicase 39B ISO RGD PMID:23454554 RGD:9686093 NCBI chr 7:23,658,089...23,669,095
Ensembl chr 7:23,658,086...23,669,046
JBrowse link
G DDX42 DEAD-box helicase 42 ISO RGD PMID:17537823 RGD:9686091 NCBI chr12:15,114,199...15,165,257
Ensembl chr12:15,114,201...15,165,177
JBrowse link
G DDX46 DEAD-box helicase 46 ISO RGD PMID:23454554 RGD:9686093 NCBI chr 2:136,972,504...137,030,186
Ensembl chr 2:136,972,507...137,030,430
JBrowse link
G DHX15 DEAH-box helicase 15 ISO RGD PMID:23454554 RGD:9686093 NCBI chr 8:18,563,808...18,620,892
Ensembl chr 8:18,563,807...18,620,909
JBrowse link
G DHX16 DEAH-box helicase 16 ISO RGD PMID:23454554 RGD:9686093 NCBI chr 7:23,190,645...23,208,071
Ensembl chr 7:23,190,656...23,208,087
JBrowse link
G DHX38 DEAH-box helicase 38 ISO RGD PMID:23454554 RGD:9686093 NCBI chr 6:14,998,091...15,016,380
Ensembl chr 6:14,998,293...15,016,378
JBrowse link
G DHX8 DEAH-box helicase 8 ISO RGD PMID:23454554 RGD:9686093 NCBI chr12:19,549,280...19,582,090
Ensembl chr12:19,549,286...19,582,154
JBrowse link
G EFTUD2 elongation factor Tu GTP binding domain containing 2 ISO RGD PMID:23454554 PMID:23592432 RGD:9686090 RGD:9686093 NCBI chr12:18,474,367...18,514,993
Ensembl chr12:18,474,097...18,517,479
JBrowse link
G EIF4A3 eukaryotic translation initiation factor 4A3 ISO RGD PMID:15145352 RGD:9686404 NCBI chr12:2,285,679...2,311,750
Ensembl chr12:2,285,579...2,313,874
JBrowse link
G HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 2:139,779,865...139,783,016
Ensembl chr 2:139,779,867...139,783,159
JBrowse link
G HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 5:19,485,033...19,491,418
Ensembl chr 5:19,485,096...19,491,417
JBrowse link
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 ISO RGD PMID:17537823 RGD:9686091 NCBI chr18:46,205,164...46,215,861
Ensembl chr18:46,205,418...46,215,856
JBrowse link
G HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr15:82,958,329...82,968,740
Ensembl chr15:82,958,362...82,968,736
JBrowse link
G HNRNPAB heterogeneous nuclear ribonucleoprotein A/B ISO RGD PMID:17537823 RGD:9686091 NCBI chr 2:80,186,998...80,194,155 JBrowse link
G HNRNPC heterogeneous nuclear ribonucleoprotein C ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 7:77,921,098...77,978,550
Ensembl chr 7:77,921,145...77,973,078
JBrowse link
G HNRNPD heterogeneous nuclear ribonucleoprotein D ISO RGD PMID:17537823 RGD:9686091 NCBI chr 8:135,844,492...135,862,633
Ensembl chr 8:135,844,487...135,862,626
JBrowse link
G HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 2:78,961,456...78,971,799
Ensembl chr 2:78,963,309...78,969,949
JBrowse link
G HNRNPH3 heterogeneous nuclear ribonucleoprotein H3 ISO RGD PMID:17537823 RGD:9686091 NCBI chr14:71,485,925...71,498,356
Ensembl chr14:71,486,255...71,497,381
JBrowse link
G HNRNPK heterogeneous nuclear ribonucleoprotein K ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr10:30,975,639...30,987,955
Ensembl chr10:30,975,702...30,987,956
JBrowse link
G HNRNPL heterogeneous nuclear ribonucleoprotein L ISO RGD PMID:17537823 RGD:9686091 NCBI chr 6:47,643,561...47,655,856
Ensembl chr 6:47,643,566...47,657,833
JBrowse link
G HNRNPM heterogeneous nuclear ribonucleoprotein M ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 2:70,813,745...70,858,903
Ensembl chr 2:70,813,745...70,862,586
JBrowse link
G HNRNPR heterogeneous nuclear ribonucleoprotein R ISO RGD PMID:17537823 RGD:9686091 NCBI chr 6:81,203,067...81,239,823
Ensembl chr 6:81,196,062...81,239,406
JBrowse link
G HNRNPU heterogeneous nuclear ribonucleoprotein U ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr10:17,475,266...17,497,060
Ensembl chr10:17,477,902...17,497,030
JBrowse link
G HSPA8 heat shock protein family A (Hsp70) member 8 ISO RGD PMID:23742842 RGD:9686094 NCBI chr 9:49,982,278...49,986,760
Ensembl chr 9:49,982,284...49,990,508
JBrowse link
G LOC102162880 pre-mRNA-splicing factor ISY1 homolog ISO RGD PMID:23742842 RGD:9686094 NCBI chr13:71,601,737...71,622,835
Ensembl chr13:71,599,237...71,622,840
JBrowse link
G LSM2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 7:23,900,385...23,908,523
Ensembl chr 7:23,900,388...23,908,526
JBrowse link
G LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr13:70,339,685...70,349,802
Ensembl chr13:70,336,907...70,348,651
JBrowse link
G LSM4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 2:59,499,560...59,513,258
Ensembl chr 2:59,499,564...59,513,246
JBrowse link
G LSM5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr18:40,752,390...40,755,909
Ensembl chr18:40,752,461...40,755,906
JBrowse link
G LSM6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 8:82,409,170...82,428,501
Ensembl chr 8:82,409,174...82,428,426
JBrowse link
G LSM7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 2:76,247,010...76,251,824
Ensembl chr 2:76,247,058...76,252,598
JBrowse link
G LSM8 LSM8 homolog, U6 small nuclear RNA associated ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr18:28,124,116...28,130,375
Ensembl chr18:28,108,308...28,130,330
JBrowse link
G MAGOHB mago homolog B, exon junction complex subunit ISO RGD PMID:15145352 RGD:9686404 NCBI chr 5:61,425,699...61,434,026
Ensembl chr 5:61,425,694...61,433,947
JBrowse link
G MBNL1 muscleblind like splicing regulator 1 ISO RGD PMID:23498935 RGD:9686382 NCBI chr13:92,491,778...92,696,235
Ensembl chr13:92,491,808...92,696,230
JBrowse link
G PLRG1 pleiotropic regulator 1 ISO RGD PMID:23742842 RGD:9686094 NCBI chr 8:74,614,925...74,631,072
Ensembl chr 8:74,614,893...74,633,102
JBrowse link
G PNN pinin, desmosome associated protein ISO RGD PMID:15145352 RGD:9686404 NCBI chr 1:169,725,649...169,734,003
Ensembl chr 1:169,725,649...169,734,003
JBrowse link
G PPIE peptidylprolyl isomerase E ISO RGD PMID:18544344 PMID:23742842 RGD:9686094 RGD:9686376 NCBI chr 6:95,548,582...95,566,470
Ensembl chr 6:95,548,652...95,579,964
JBrowse link
G PPIG peptidylprolyl isomerase G ISO RGD PMID:18544344 RGD:9686376 NCBI chr15:75,940,397...75,979,168
Ensembl chr15:75,940,865...75,979,164
JBrowse link
G PPIH peptidylprolyl isomerase H ISO RGD PMID:18544344 RGD:9686376 NCBI chr 6:168,741,999...168,760,350
Ensembl chr 6:168,742,005...168,760,286
JBrowse link
G PPIL1 peptidylprolyl isomerase like 1 ISO RGD PMID:18544344 PMID:23742842 RGD:9686094 RGD:9686376 NCBI chr 7:32,522,736...32,547,874
Ensembl chr 7:32,522,733...32,547,839
JBrowse link
G PPIL2 peptidylprolyl isomerase like 2 ISO RGD PMID:18544344 RGD:9686376 NCBI chr14:50,206,807...50,232,845
Ensembl chr14:50,208,374...50,232,830
JBrowse link
G PPIL3 peptidylprolyl isomerase like 3 ISO RGD PMID:18544344 RGD:9686376 NCBI chr15:104,569,138...104,583,752
Ensembl chr15:104,569,147...104,583,683
JBrowse link
G PRPF18 pre-mRNA processing factor 18 ISO RGD PMID:24452469 RGD:9686092 NCBI chr10:48,062,229...48,122,222
Ensembl chr10:48,061,728...48,164,499
JBrowse link
G PRPF19 pre-mRNA processing factor 19 ISO RGD PMID:23742842 RGD:9686094 NCBI chr 2:10,851,779...10,860,315
Ensembl chr 2:10,851,579...10,860,836
JBrowse link
G PRPF3 pre-mRNA processing factor 3 ISO RGD PMID:19239890 RGD:9686089 NCBI chr 4:98,745,263...98,771,724
Ensembl chr 4:98,745,269...98,785,807
JBrowse link
G PRPF31 pre-mRNA processing factor 31 ISO RGD PMID:19239890 RGD:9686089 NCBI chr 6:55,995,087...56,011,507
Ensembl chr 6:55,995,091...56,011,441
JBrowse link
G PRPF4 pre-mRNA splicing tri-snRNP complex factor PRPF4 ISO RGD PMID:19239890 RGD:9686089 NCBI chr 1:253,906,258...253,925,683
Ensembl chr 1:253,906,717...253,925,046
JBrowse link
G PRPF6 pre-mRNA processing factor 6 ISO RGD PMID:19239890 RGD:9686089 NCBI chr17:62,815,509...62,857,795
Ensembl chr17:62,815,085...62,858,382
JBrowse link
G PRPF8 pre-mRNA processing factor 8 ISO RGD PMID:23592432 RGD:9686090 NCBI chr12:47,861,041...47,895,286
Ensembl chr12:47,861,043...47,895,190
JBrowse link
G PTBP1 polypyrimidine tract binding protein 1 ISO RGD PMID:23385723 RGD:9686381 NCBI chr 2:77,551,562...77,563,153
Ensembl chr 2:77,551,562...77,563,134
JBrowse link
G PTBP2 polypyrimidine tract binding protein 2 ISO RGD PMID:23498935 RGD:9686382 NCBI chr 4:120,961,211...121,041,876
Ensembl chr 4:120,961,381...121,041,802
JBrowse link
G QKI QKI, KH domain containing RNA binding ISO RGD PMID:23385723 RGD:9686381 NCBI chr 1:4,732,575...4,883,386
Ensembl chr 1:4,735,514...4,883,392
JBrowse link
G RBM22 RNA binding motif protein 22 ISO RGD PMID:23742842 RGD:9686094 NCBI chr 2:151,663,182...151,672,337
Ensembl chr 2:151,663,185...151,672,313
JBrowse link
G RBM8A RNA binding motif protein 8A ISO RGD PMID:15145352 RGD:9686404 NCBI chr 4:99,408,422...99,411,964
Ensembl chr 4:99,408,466...99,413,492
JBrowse link
G RBMX RNA binding motif protein X-linked ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr  X:111,965,859...111,974,544
Ensembl chr  X:111,962,633...111,974,472
JBrowse link
G RNPS1 RNA binding protein with serine rich domain 1 ISO RGD PMID:15145352 RGD:9686404 NCBI chr 3:39,739,058...39,749,600
Ensembl chr 3:39,739,308...39,750,005
JBrowse link
G SART3 spliceosome associated factor 3, U4/U6 recycling protein ISO RGD PMID:23592432 RGD:9686090 NCBI chr14:42,223,752...42,259,992
Ensembl chr14:42,223,964...42,261,811
JBrowse link
G SF1 splicing factor 1 ISO RGD PMID:19239890 RGD:9686089 NCBI chr 2:7,391,295...7,404,693
Ensembl chr 2:7,391,383...7,404,948
JBrowse link
G SF3A1 splicing factor 3a subunit 1 ISO RGD PMID:17537823 RGD:9686091 NCBI chr14:47,312,460...47,335,448
Ensembl chr14:47,312,473...47,335,370
JBrowse link
G SF3A2 splicing factor 3a subunit 2 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 2:76,404,882...76,414,901
Ensembl chr 2:76,410,602...76,415,776
JBrowse link
G SF3A3 splicing factor 3a subunit 3 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 6:93,951,599...93,976,324
Ensembl chr 6:93,951,601...93,976,329
JBrowse link
G SF3B1 splicing factor 3b subunit 1 ISO RGD PMID:17537823 RGD:9686091 NCBI chr15:101,274,968...101,338,018
Ensembl chr15:101,276,851...101,299,105
JBrowse link
G SF3B2 splicing factor 3b subunit 2 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 2:6,279,039...6,295,550
Ensembl chr 2:6,279,049...6,294,639
JBrowse link
G SF3B3 splicing factor 3b subunit 3 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 6:13,524,519...13,578,681
Ensembl chr 6:13,524,717...13,578,680
JBrowse link
G SF3B4 splicing factor 3b subunit 4 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 4:99,123,564...99,129,218
Ensembl chr 4:99,123,585...99,129,218
JBrowse link
G SF3B5 splicing factor 3b subunit 5 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 1:21,231,264...21,232,014
Ensembl chr 1:21,231,408...21,231,668
JBrowse link
G SF3B6 splicing factor 3b subunit 6 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 3:114,605,863...114,618,123
Ensembl chr 3:114,605,971...114,620,563
JBrowse link
G SLU7 SLU7 homolog, splicing factor ISO RGD PMID:24452469 RGD:9686092 NCBI chr16:63,118,426...63,145,655
Ensembl chr16:63,118,733...63,136,640
JBrowse link
G SNRNP200 small nuclear ribonucleoprotein U5 subunit 200 ISO RGD PMID:23454554 PMID:23592432 RGD:9686090 RGD:9686093 NCBI chr 3:46,929,066...46,960,420
Ensembl chr 3:46,929,136...46,960,957
JBrowse link
G SNRNP70 small nuclear ribonucleoprotein U1 subunit 70 ISO RGD PMID:23592432 RGD:9686090 NCBI chr 6:54,288,354...54,304,272
Ensembl chr 6:54,288,397...54,304,103
JBrowse link
G SNRPA small nuclear ribonucleoprotein polypeptide A ISO RGD PMID:23592432 RGD:9686090 NCBI chr 6:48,971,868...48,982,369
Ensembl chr 6:48,971,339...48,982,443
JBrowse link
G SNRPA1 small nuclear ribonucleoprotein polypeptide A' ISO RGD PMID:17537823 RGD:9686091 NCBI chr 1:145,707,393...145,719,287
Ensembl chr 1:145,707,413...145,719,385
JBrowse link
G SNRPB small nuclear ribonucleoprotein polypeptides B and B1 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr17:33,072,104...33,094,847
Ensembl chr17:33,080,407...33,094,602
JBrowse link
G SNRPB2 small nuclear ribonucleoprotein polypeptide B2 ISO RGD PMID:17537823 RGD:9686091 NCBI chr17:25,363,107...25,373,289
Ensembl chr17:25,363,167...25,373,281
JBrowse link
G SNRPC small nuclear ribonucleoprotein polypeptide C ISO RGD PMID:23592432 RGD:9686090 NCBI chr 7:30,708,243...30,723,480
Ensembl chr 7:30,708,332...30,724,045
JBrowse link
G SNRPD1 small nuclear ribonucleoprotein D1 polypeptide ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 6:106,798,201...106,810,178
Ensembl chr 6:106,798,265...106,813,816
JBrowse link
G SNRPD2 small nuclear ribonucleoprotein D2 polypeptide ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 6:52,035,900...52,042,474
Ensembl chr 6:52,035,134...52,042,474
JBrowse link
G SNRPD3 small nuclear ribonucleoprotein D3 polypeptide ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr14:49,585,177...49,598,015 JBrowse link
G SNRPE small nuclear ribonucleoprotein polypeptide E ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 9:64,560,544...64,567,007
Ensembl chr 9:64,560,523...64,567,007
JBrowse link
G SNRPF small nuclear ribonucleoprotein polypeptide F ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 5:87,614,934...87,622,863
Ensembl chr 5:87,604,596...87,622,879
JBrowse link
G SNRPG small nuclear ribonucleoprotein polypeptide G ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 3:72,198,722...72,208,053
Ensembl chr 3:72,198,756...72,208,865
JBrowse link
G SNU13 small nuclear ribonucleoprotein 13 ISO RGD PMID:19239890 RGD:9686089 NCBI chr 5:6,891,014...6,900,026
Ensembl chr 5:6,885,067...6,900,022
JBrowse link
G SNW1 SNW domain containing 1 ISO RGD PMID:23742842 RGD:9686094 NCBI chr 7:100,718,298...100,749,414
Ensembl chr 7:100,718,036...100,749,356
JBrowse link
G SRRM1 serine and arginine repetitive matrix 1 ISO RGD PMID:15145352 PMID:17537823 RGD:9686091 RGD:9686404 NCBI chr 6:82,309,192...82,348,076
Ensembl chr 6:82,286,211...82,343,766
JBrowse link
G SRRM2 serine/arginine repetitive matrix 2 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 3:39,275,274...39,293,741
Ensembl chr 3:39,275,288...39,293,747
JBrowse link
G SRRM4 serine/arginine repetitive matrix 4 ISO RGD PMID:23498935 RGD:9686382 NCBI chr14:33,653,542...33,818,859
Ensembl chr14:33,657,143...33,816,798
JBrowse link
G SRSF1 serine and arginine rich splicing factor 1 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr12:34,278,363...34,282,164
Ensembl chr12:34,272,956...34,282,162
JBrowse link
G SRSF10 serine and arginine rich splicing factor 10 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 6:81,727,893...81,741,516
Ensembl chr 6:81,727,901...81,741,496
JBrowse link
G SRSF11 serine and arginine rich splicing factor 11 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 6:142,621,904...142,668,107
Ensembl chr 6:142,621,924...142,642,073
JBrowse link
G SRSF12 serine and arginine rich splicing factor 12 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 1:57,145,078...57,166,138
Ensembl chr 1:57,148,582...57,165,689
JBrowse link
G SRSF2 serine and arginine rich splicing factor 2 ISO RGD PMID:17537823 RGD:9686091 NCBI chr12:4,800,578...4,803,767
Ensembl chr12:4,800,624...4,801,675
JBrowse link
G SRSF3 serine and arginine rich splicing factor 3 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 7:32,289,464...32,298,652
Ensembl chr 7:32,289,480...32,298,580
JBrowse link
G SRSF4 serine and arginine rich splicing factor 4 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 6:86,064,776...86,092,769
Ensembl chr 6:86,064,789...86,092,843
JBrowse link
G SRSF5 serine and arginine rich splicing factor 5 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 7:93,393,379...93,398,510
Ensembl chr 7:93,393,426...93,403,011
JBrowse link
G SRSF6 serine and arginine rich splicing factor 6 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr17:46,119,612...46,122,540
Ensembl chr17:46,119,409...46,125,126
JBrowse link
G SRSF7 serine and arginine rich splicing factor 7 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 3:101,599,429...101,608,786
Ensembl chr 3:101,603,707...101,613,237
JBrowse link
G SRSF9 serine and arginine rich splicing factor 9 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr14:40,425,412...40,433,950
Ensembl chr14:40,419,093...40,434,047
JBrowse link
G SYF2 SYF2 pre-mRNA splicing factor ISO RGD PMID:23742842 RGD:9686094 NCBI chr 6:82,836,894...82,843,484
Ensembl chr 6:82,836,455...82,843,407
JBrowse link
G SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein ISO RGD PMID:17537823 RGD:9686091 NCBI chr 1:54,563,112...54,598,408
Ensembl chr 1:54,563,114...54,598,407
JBrowse link
G TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 ISO RGD PMID:23385723 RGD:9686381 NCBI chr14:129,441,209...129,467,150
Ensembl chr14:129,441,211...129,467,112
JBrowse link
G TXNL4A thioredoxin like 4A ISO RGD PMID:19239890 RGD:9686089 NCBI chr 6:127,975,164...127,991,112
Ensembl chr 6:127,974,543...127,991,177
JBrowse link
G U2AF1 U2 small nuclear RNA auxiliary factor 1 ISO RGD PMID:19239890 RGD:9686089 NCBI chr13:206,244,772...206,257,697
Ensembl chr13:206,244,773...206,257,702
JBrowse link
G U2AF2 U2 small nuclear RNA auxiliary factor 2 ISO RGD PMID:19239890 RGD:9686089 NCBI chr 6:59,773,205...59,789,403
Ensembl chr 6:59,774,078...59,789,395
JBrowse link
G XAB2 XPA binding protein 2 ISO RGD PMID:23742842 RGD:9686094 NCBI chr 2:71,521,034...71,530,468
Ensembl chr 2:71,521,081...71,530,929
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 4043
    regulatory pathway 2490
      pathway pertinent to DNA replication and repair, cell cycle, maintenance of genomic integrity, RNA and protein biosynthesis 1328
        transcription pathway 923
          RNA polymerase transcription pathway 349
            eukaryotic RNA polymerase transcription pathway 349
              RNA polymerase II transcription pathway 280
                RNA polymerase II transcription elongation pathway 35
                RNA polymerase II transcription initiation pathway 57
                RNA polymerase II transcription termination pathway 18
                lncRNA maturation pathway + 114
                mRNA maturation pathway + 141
paths to the root