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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:RNA polymerase II transcription pathway
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Accession:PW:0000127 term browser browse the term
Definition:The series of events governing the synthesis of protein-coding messenger RNA (mRNA) precursors and of transcripts of many classes of non-coding genes.
Synonyms:related_synonym: RNA Polymerase II Transcription;   transcription by RNA polymerase II

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RNA polymerase II transcription pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnc cyclin C ISO RGD PMID:24088064 RGD:9681732 NCBI chr 4:21,727,705...21,759,917
Ensembl chr 4:21,727,701...21,759,922
JBrowse link
G Cdc14a CDC14 cell division cycle 14A ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737, RGD:9681738 NCBI chr 3:116,066,202...116,222,390
Ensembl chr 3:116,066,202...116,222,394
JBrowse link
G Cdc14b CDC14 cell division cycle 14B ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737, RGD:9681738 NCBI chr13:64,337,085...64,423,670
Ensembl chr13:64,337,082...64,423,104
JBrowse link
G Cdk12 cyclin dependent kinase 12 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737, RGD:9681738 NCBI chr11:98,093,259...98,171,941
Ensembl chr11:98,093,885...98,169,330
JBrowse link
G Cdk19 cyclin dependent kinase 19 ISO RGD PMID:24088064 RGD:9681732 NCBI chr10:40,225,283...40,359,814
Ensembl chr10:40,215,560...40,359,814
JBrowse link
G Cdk7 cyclin dependent kinase 7 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737, RGD:9681738 NCBI chr13:100,833,532...100,867,454
Ensembl chr13:100,839,139...100,867,447
JBrowse link
G Cdk8 cyclin dependent kinase 8 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:24088064 PMID:23837720 PMID:22622228 RGD:9681732, RGD:9681738, RGD:9681737 NCBI chr 5:146,167,432...146,239,684
Ensembl chr 5:146,168,040...146,239,684
JBrowse link
G Cdk9 cyclin dependent kinase 9 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737, RGD:9681738 NCBI chr 2:32,595,794...32,608,098
Ensembl chr 2:32,595,796...32,603,088
JBrowse link
G Ctdp1 CTD phosphatase subunit 1 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737, RGD:9681738 NCBI chr18:80,451,174...80,522,959
Ensembl chr18:80,451,174...80,512,910
JBrowse link
G Ctdsp1 CTD small phosphatase 1 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737, RGD:9681738 NCBI chr 1:74,430,625...74,436,444
Ensembl chr 1:74,430,668...74,436,444
JBrowse link
G Med1 mediator complex subunit 1 ISO RGD PMID:24088064 RGD:9681732 NCBI chr11:98,042,980...98,084,121
Ensembl chr11:98,042,980...98,084,119
JBrowse link
G Med10 mediator complex subunit 10 ISO RGD PMID:24088064 RGD:9681732 NCBI chr13:69,950,467...69,964,221
Ensembl chr13:69,950,514...69,964,223
JBrowse link
G Med11 mediator complex subunit 11 ISO RGD PMID:24088064 RGD:9681732 NCBI chr11:70,342,744...70,344,558
Ensembl chr11:70,342,745...70,344,553
JBrowse link
G Med12 mediator complex subunit 12 ISO RGD PMID:24088064 RGD:9681732 NCBI chr  X:100,317,697...100,342,540
Ensembl chr  X:100,317,636...100,341,071
JBrowse link
G Med12l mediator complex subunit 12-like ISO RGD PMID:24088064 RGD:9681732 NCBI chr 3:58,912,820...59,225,867
Ensembl chr 3:58,913,246...59,226,103
JBrowse link
G Med13 mediator complex subunit 13 ISO RGD PMID:24088064 RGD:9681732 NCBI chr11:86,157,859...86,248,422
Ensembl chr11:86,157,859...86,248,428
JBrowse link
G Med13l mediator complex subunit 13-like ISO RGD PMID:24088064 RGD:9681732 NCBI chr 5:118,698,363...118,903,503
Ensembl chr 5:118,698,744...118,903,503
JBrowse link
G Med14 mediator complex subunit 14 ISO RGD PMID:24088064 RGD:9681732 NCBI chr  X:12,541,607...12,628,813
Ensembl chr  X:12,541,608...12,628,312
JBrowse link
G Med15 mediator complex subunit 15 ISO RGD PMID:24088064 RGD:9681732 NCBI chr16:17,469,072...17,540,811
Ensembl chr16:17,469,072...17,550,755
JBrowse link
G Med16 mediator complex subunit 16 ISO RGD PMID:24088064 RGD:9681732 NCBI chr10:79,730,543...79,744,757
Ensembl chr10:79,730,542...79,744,757
JBrowse link
G Med17 mediator complex subunit 17 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 9:15,171,647...15,194,576
Ensembl chr 9:15,171,647...15,191,227
JBrowse link
G Med18 mediator complex subunit 18 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 4:132,186,040...132,191,232
Ensembl chr 4:132,186,042...132,191,232
JBrowse link
G Med19 mediator complex subunit 19 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 2:84,508,769...84,519,330
Ensembl chr 2:84,508,746...84,518,559
JBrowse link
G Med20 mediator complex subunit 20 ISO RGD PMID:24088064 RGD:9681732 NCBI chr17:47,922,510...47,935,176
Ensembl chr17:47,922,507...47,935,343
JBrowse link
G Med21 mediator complex subunit 21 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 6:146,544,077...146,552,098
Ensembl chr 6:146,544,045...146,552,230
JBrowse link
G Med22 mediator complex subunit 22 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 2:26,795,279...26,800,654
Ensembl chr 2:26,795,274...26,800,689
JBrowse link
G Med23 mediator complex subunit 23 ISO RGD PMID:24088064 RGD:9681732 NCBI chr10:24,745,889...24,789,358
Ensembl chr10:24,745,884...24,789,579
JBrowse link
G Med24 mediator complex subunit 24 ISO RGD PMID:24088064 RGD:9681732 NCBI chr11:98,595,423...98,620,245
Ensembl chr11:98,595,417...98,620,261
JBrowse link
G Med25 mediator complex subunit 25 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 7:44,526,189...44,544,771
Ensembl chr 7:44,526,189...44,542,136
JBrowse link
G Med26 mediator complex subunit 26 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 8:73,248,402...73,302,154
Ensembl chr 8:73,248,405...73,302,114
JBrowse link
G Med27 mediator complex subunit 27 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 2:29,236,822...29,414,802
Ensembl chr 2:29,236,831...29,414,805
JBrowse link
G Med28 mediator complex subunit 28 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 5:45,677,571...45,686,626
Ensembl chr 5:45,677,571...45,686,618
JBrowse link
G Med29 mediator complex subunit 29 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 7:28,084,667...28,092,126
Ensembl chr 7:28,085,571...28,092,133
JBrowse link
G Med30 mediator complex subunit 30 ISO RGD PMID:24088064 RGD:9681732 NCBI chr15:52,575,841...52,593,827
Ensembl chr15:52,575,804...52,593,960
JBrowse link
G Med31 mediator complex subunit 31 ISO RGD PMID:24088064 RGD:9681732 NCBI chr11:72,102,550...72,106,418
Ensembl chr11:72,102,550...72,106,418
JBrowse link
G Med4 mediator complex subunit 4 ISO RGD PMID:24088064 RGD:9681732 NCBI chr14:73,747,489...73,755,985
Ensembl chr14:73,747,465...73,756,289
JBrowse link
G Med6 mediator complex subunit 6 ISO RGD PMID:24088064 RGD:9681732 NCBI chr12:81,620,331...81,641,782
Ensembl chr12:81,620,331...81,641,782
JBrowse link
G Med7 mediator complex subunit 7 ISO RGD PMID:24088064 RGD:9681732 NCBI chr11:46,327,742...46,333,548
Ensembl chr11:46,327,752...46,333,548
JBrowse link
G Med8 mediator complex subunit 8 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 4:118,266,495...118,273,021
Ensembl chr 4:118,266,534...118,272,979
JBrowse link
G Med9 mediator complex subunit 9 ISO RGD PMID:24088064 RGD:9681732 NCBI chr11:59,839,040...59,854,132
Ensembl chr11:59,839,032...59,853,031
JBrowse link
G Polr2a polymerase (RNA) II (DNA directed) polypeptide A ISO RGD PMID:22960599 RGD:9588243 NCBI chr11:69,624,823...69,649,459
Ensembl chr11:69,624,823...69,649,463
JBrowse link
G Polr2b polymerase (RNA) II (DNA directed) polypeptide B ISO RGD PMID:22960599 RGD:9588243 NCBI chr 5:77,458,331...77,497,175
Ensembl chr 5:77,457,994...77,497,171
JBrowse link
G Polr2c polymerase (RNA) II (DNA directed) polypeptide C ISO RGD PMID:22960599 RGD:9588243 NCBI chr 8:95,584,078...95,590,870
Ensembl chr 8:95,584,078...95,600,163
JBrowse link
G Polr2d polymerase (RNA) II (DNA directed) polypeptide D ISO RGD PMID:22960599 RGD:9588243 NCBI chr18:31,922,178...31,929,762
Ensembl chr18:31,922,212...31,929,754
JBrowse link
G Polr2e polymerase (RNA) II (DNA directed) polypeptide E ISO RGD PMID:22960599 RGD:9588243 NCBI chr10:79,871,787...79,875,493
Ensembl chr10:79,871,783...79,875,629
JBrowse link
G Polr2f polymerase (RNA) II (DNA directed) polypeptide F ISO RGD PMID:22960599 RGD:9588243 NCBI chr15:79,025,525...79,035,974
Ensembl chr15:79,025,209...79,035,974
JBrowse link
G Polr2g polymerase (RNA) II (DNA directed) polypeptide G ISO RGD PMID:22960599 RGD:9588243 NCBI chr19:8,770,493...8,775,921
Ensembl chr19:8,770,491...8,775,941
JBrowse link
G Polr2h polymerase (RNA) II (DNA directed) polypeptide H ISO RGD PMID:22960599 RGD:9588243 NCBI chr16:20,536,552...20,541,015
Ensembl chr16:20,536,415...20,541,017
JBrowse link
G Polr2i polymerase (RNA) II (DNA directed) polypeptide I ISO RGD PMID:22960599 RGD:9588243 NCBI chr 7:29,931,499...29,932,812
Ensembl chr 7:29,931,373...29,932,815
JBrowse link
G Polr2j polymerase (RNA) II (DNA directed) polypeptide J ISO RGD PMID:22960599 RGD:9588243 NCBI chr 5:136,145,545...136,151,801
Ensembl chr 5:136,145,485...136,151,801
JBrowse link
G Polr2k polymerase (RNA) II (DNA directed) polypeptide K ISO RGD PMID:22960599 RGD:9588243 NCBI chr15:36,174,156...36,177,158
Ensembl chr15:36,174,156...36,177,156
JBrowse link
G Polr2l polymerase (RNA) II (DNA directed) polypeptide L ISO RGD PMID:22960599 RGD:9588243 NCBI chr 7:141,051,773...141,055,066
Ensembl chr 7:141,051,773...141,055,045
JBrowse link
G Rpap2 RNA polymerase II associated protein 2 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737, RGD:9681738 NCBI chr 5:107,745,239...107,809,719
Ensembl chr 5:107,745,239...107,809,704
JBrowse link
G Ssu72 Ssu72 RNA polymerase II CTD phosphatase homolog (yeast) ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737, RGD:9681738 NCBI chr 4:155,789,272...155,818,336
Ensembl chr 4:155,789,257...155,818,336
JBrowse link
3'-end pre-mRNA processing pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clp1 CLP1, cleavage and polyadenylation factor I subunit ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 2:84,553,466...84,557,631
Ensembl chr 2:84,552,448...84,557,694
JBrowse link
G Cpsf1 cleavage and polyadenylation specific factor 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr15:76,480,008...76,491,861
Ensembl chr15:76,480,003...76,491,791
JBrowse link
G Cpsf2 cleavage and polyadenylation specific factor 2 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr12:101,940,345...101,972,252
Ensembl chr12:101,942,247...101,972,683
JBrowse link
G Cpsf3 cleavage and polyadenylation specificity factor 3 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr12:21,336,298...21,365,057
Ensembl chr12:21,335,392...21,365,057
JBrowse link
G Cpsf4 cleavage and polyadenylation specific factor 4 ISO RGD PMID:21957020 PMID:24243805 PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742, RGD:9681741, RGD:9681742 NCBI chr 5:145,104,023...145,118,851
Ensembl chr 5:145,104,023...145,118,851
JBrowse link
G Cpsf6 cleavage and polyadenylation specific factor 6 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr10:117,180,572...117,212,903
Ensembl chr10:117,180,578...117,215,920
JBrowse link
G Cpsf7 cleavage and polyadenylation specific factor 7 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr19:10,502,594...10,525,099
Ensembl chr19:10,502,630...10,525,017
JBrowse link
G Cstf1 cleavage stimulation factor, 3' pre-RNA, subunit 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 2:172,212,591...172,224,369
Ensembl chr 2:172,212,601...172,224,368
JBrowse link
G Cstf2 cleavage stimulation factor, 3' pre-RNA subunit 2 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr  X:132,959,925...132,987,571
Ensembl chr  X:132,959,936...132,987,568
JBrowse link
G Cstf2t cleavage stimulation factor, 3' pre-RNA subunit 2, tau ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr19:31,060,241...31,063,992
Ensembl chr19:31,060,237...31,064,469
JBrowse link
G Cstf3 cleavage stimulation factor, 3' pre-RNA, subunit 3 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 2:104,420,829...104,495,770
Ensembl chr 2:104,420,868...104,495,774
JBrowse link
G Dxo decapping exoribonuclease ISO RGD PMID:21957020 RGD:9681741 NCBI chr17:35,055,998...35,058,162
Ensembl chr17:35,055,995...35,058,209
JBrowse link
G Fip1l1 factor interacting with PAPOLA and CPSF1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 5:74,695,774...74,759,451
Ensembl chr 5:74,696,110...74,759,461
JBrowse link
G Nudt21 nudix hydrolase 21 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 8:94,746,031...94,763,667
Ensembl chr 8:94,742,124...94,763,659
JBrowse link
G Pabpn1 poly(A) binding protein, nuclear 1 ISO RGD PMID:24243805 RGD:9681742 NCBI chr14:55,131,600...55,136,384
Ensembl chr14:55,129,957...55,135,626
JBrowse link
G Papola poly (A) polymerase alpha ISO RGD PMID:24243805 RGD:9681742 NCBI chr12:105,750,926...105,805,208
Ensembl chr12:105,750,953...105,805,203
JBrowse link
G Papolb poly (A) polymerase beta (testis specific) ISO RGD PMID:24243805 RGD:9681742 NCBI chr 5:142,513,495...142,515,831
Ensembl chr 5:142,511,593...142,515,831
JBrowse link
G Papolg poly(A) polymerase gamma ISO RGD PMID:24243805 RGD:9681742 NCBI chr11:23,810,145...23,845,292
Ensembl chr11:23,812,646...23,845,253
JBrowse link
G Pcf11 PCF11 cleavage and polyadenylation factor subunit ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 7:92,292,666...92,319,284
Ensembl chr 7:92,292,751...92,319,142
JBrowse link
G Sympk symplekin ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 7:18,758,321...18,788,542
Ensembl chr 7:18,758,302...18,788,543
JBrowse link
G Wdr33 WD repeat domain 33 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr18:31,937,079...32,042,040
Ensembl chr18:31,937,143...32,040,450
JBrowse link
G Xrn2 5'-3' exoribonuclease 2 ISO RGD PMID:21957020 RGD:9681741 NCBI chr 2:146,854,672...146,919,922
Ensembl chr 2:146,854,916...146,919,920
JBrowse link
5'-end pre-mRNA capping pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ncbp1 nuclear cap binding protein subunit 1 ISO RGD PMID:24354960 RGD:9684851 NCBI chr 4:46,138,732...46,172,403
Ensembl chr 4:46,138,613...46,172,403
JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 ISO RGD PMID:24354960 RGD:9684851 NCBI chr16:31,767,364...31,777,290
Ensembl chr16:31,767,331...31,780,599
JBrowse link
G Ramac RNA guanine-7 methyltransferase activating subunit ISO RGD PMID:24354960 RGD:9684851 NCBI chr 7:81,412,701...81,419,238
Ensembl chr 7:81,412,673...81,419,239
JBrowse link
G Rngtt RNA guanylyltransferase and 5'-phosphatase ISO RGD PMID:24354960 RGD:9684851 NCBI chr 4:33,310,300...33,502,610
Ensembl chr 4:33,310,311...33,502,614
JBrowse link
G Rnmt RNA (guanine-7-) methyltransferase ISO RGD PMID:24354960 RGD:9684851 NCBI chr18:68,433,406...68,457,923
Ensembl chr18:68,433,426...68,457,923
JBrowse link
RNA polymerase II transcription elongation pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aff1 AF4/FMR2 family, member 1 ISO RGD PMID:22895430 RGD:9681740 NCBI chr 5:103,840,307...104,003,188
Ensembl chr 5:103,840,240...104,003,188
JBrowse link
G Aff4 AF4/FMR2 family, member 4 ISO RGD PMID:22895430 RGD:9681740 NCBI chr11:53,240,807...53,312,657
Ensembl chr11:53,241,660...53,312,657
JBrowse link
G Ccnk cyclin K ISO RGD PMID:24050178 RGD:9681735 NCBI chr12:108,145,543...108,170,252
Ensembl chr12:108,145,838...108,169,618
JBrowse link
G Ccnt1 cyclin T1 ISO RGD PMID:24050178 RGD:9681735 NCBI chr15:98,436,570...98,468,340
Ensembl chr15:98,436,570...98,468,804
JBrowse link
G Ccnt2 cyclin T2 ISO RGD PMID:24050178 RGD:9681735 NCBI chr 1:127,701,901...127,732,574
Ensembl chr 1:127,701,901...127,735,798
JBrowse link
G Cdc73 cell division cycle 73, Paf1/RNA polymerase II complex component ISO RGD PMID:20060942 RGD:9588246 NCBI chr 1:143,479,014...143,578,631
Ensembl chr 1:143,474,538...143,578,631
JBrowse link
G Cdk9 cyclin dependent kinase 9 ISO RGD PMID:24050178 RGD:9681735 NCBI chr 2:32,595,794...32,608,098
Ensembl chr 2:32,595,796...32,603,088
JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component ISO RGD PMID:20060942 RGD:9588246 NCBI chr 7:110,628,158...110,655,584
Ensembl chr 7:110,628,158...110,655,584
JBrowse link
G Eaf1 ELL associated factor 1 ISO RGD PMID:22895430 RGD:9681740 NCBI chr14:31,217,036...31,231,815
Ensembl chr14:31,216,356...31,231,815
JBrowse link
G Eaf2 ELL associated factor 2 ISO RGD PMID:22895430 RGD:9681740 NCBI chr16:36,613,246...36,695,275
Ensembl chr16:36,613,246...36,695,365
JBrowse link
G Ell elongation factor RNA polymerase II ISO RGD PMID:22895430 RGD:9681740 NCBI chr 8:70,992,345...71,045,508
Ensembl chr 8:70,992,107...71,045,508
JBrowse link
G Ell2 elongation factor for RNA polymerase II 2 ISO RGD PMID:22895430 RGD:9681740 NCBI chr13:75,855,603...75,920,480
Ensembl chr13:75,854,876...75,920,483
JBrowse link
G Ell3 elongation factor RNA polymerase II-like 3 ISO RGD PMID:22895430 RGD:9681740 NCBI chr 2:121,269,508...121,273,082
Ensembl chr 2:121,269,491...121,274,759
JBrowse link
G Gtf2f1 general transcription factor IIF, polypeptide 1 ISO RGD PMID:24050178 RGD:9681735 NCBI chr17:57,310,402...57,318,398
Ensembl chr17:57,310,405...57,318,288
JBrowse link
G Gtf2f2 general transcription factor IIF, polypeptide 2 ISO RGD PMID:24050178 RGD:9681735 NCBI chr14:76,134,368...76,248,356
Ensembl chr14:76,134,377...76,248,305
JBrowse link
G Leo1 Leo1, Paf1/RNA polymerase II complex component ISO RGD PMID:20060942 RGD:9588246 NCBI chr 9:75,348,072...75,373,714
Ensembl chr 9:75,348,806...75,373,714
JBrowse link
G Mllt1 myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1 ISO RGD PMID:22895430 RGD:9681740 NCBI chr17:57,199,611...57,242,497
Ensembl chr17:57,198,385...57,242,415
JBrowse link
G Mllt3 myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3 ISO RGD PMID:22895430 RGD:9681740 NCBI chr 4:87,688,162...87,951,652
Ensembl chr 4:87,688,162...87,951,601
JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 ISO RGD PMID:24354960 RGD:9684851 NCBI chr 4:46,138,732...46,172,403
Ensembl chr 4:46,138,613...46,172,403
JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 ISO RGD PMID:24354960 RGD:9684851 NCBI chr16:31,767,364...31,777,290
Ensembl chr16:31,767,331...31,780,599
JBrowse link
G Nelfa negative elongation factor complex member A, Whsc2 ISO RGD PMID:24050178 RGD:9681735 NCBI chr 5:34,055,263...34,093,615
Ensembl chr 5:34,055,260...34,093,757
JBrowse link
G Nelfb negative elongation factor complex member B ISO RGD PMID:24050178 RGD:9681735 NCBI chr 2:25,089,724...25,101,501
Ensembl chr 2:25,089,724...25,101,501
JBrowse link
G Nelfcd negative elongation factor complex member C/D, Th1l ISO RGD PMID:24050178 RGD:9681735 NCBI chr 2:174,257,623...174,269,298
Ensembl chr 2:174,257,597...174,269,295
JBrowse link
G Nelfe negative elongation factor complex member E, Rdbp ISO RGD PMID:24050178 RGD:9681735 NCBI chr17:35,069,367...35,075,348
Ensembl chr17:35,069,367...35,075,348
JBrowse link
G Paf1 Paf1, RNA polymerase II complex component ISO RGD PMID:20060942 RGD:9588246 NCBI chr 7:28,074,998...28,098,813
Ensembl chr 7:28,092,376...28,098,813
JBrowse link
G Rngtt RNA guanylyltransferase and 5'-phosphatase ISO RGD PMID:24354960 RGD:9684851 NCBI chr 4:33,310,300...33,502,610
Ensembl chr 4:33,310,311...33,502,614
JBrowse link
G Rtf1 RTF1, Paf1/RNA polymerase II complex component ISO RGD PMID:20060942 RGD:9588246 NCBI chr 2:119,505,549...119,565,888
Ensembl chr 2:119,505,549...119,565,888
JBrowse link
G Serinc4 serine incorporator 4 ISO RGD PMID:22895430 RGD:9681740 NCBI chr 2:121,281,658...121,287,245
Ensembl chr 2:121,269,540...121,287,262
JBrowse link
G Skic8 SKI8 subunit of superkiller complex ISO RGD PMID:20060942 RGD:9588246 NCBI chr 9:54,624,437...54,641,833
Ensembl chr 9:54,622,019...54,641,803
JBrowse link
G Ssrp1 structure specific recognition protein 1 ISO RGD PMID:24050178 RGD:9681735 NCBI chr 2:84,867,519...84,877,453
Ensembl chr 2:84,867,578...84,877,453
JBrowse link
G Supt16 SPT16, facilitates chromatin remodeling subunit ISO RGD PMID:24050178 RGD:9681735 NCBI chr14:52,397,876...52,434,696
Ensembl chr14:52,397,871...52,434,873
JBrowse link
G Supt4a SPT4A, DSIF elongation factor subunit ISO RGD PMID:24050178 RGD:9681735 NCBI chr11:87,628,377...87,634,449
Ensembl chr11:87,628,378...87,634,449
JBrowse link
G Supt5 suppressor of Ty 5, DSIF elongation factor subunit ISO RGD PMID:24050178 RGD:9681735 NCBI chr 7:28,014,316...28,038,341
Ensembl chr 7:28,014,316...28,038,171
JBrowse link
G Tcea1 transcription elongation factor A (SII) 1 ISO RGD PMID:24050178 RGD:9681735 NCBI chr 1:4,927,917...4,968,132
Ensembl chr 1:4,928,037...4,968,132
JBrowse link
G Tcea2 transcription elongation factor A (SII), 2 ISO RGD PMID:24050178 RGD:9681735 NCBI chr 2:181,322,090...181,329,860
Ensembl chr 2:181,322,103...181,329,864
JBrowse link
G Tcea3 transcription elongation factor A (SII), 3 ISO RGD PMID:24050178 RGD:9681735 NCBI chr 4:135,975,253...136,002,214
Ensembl chr 4:135,975,040...136,002,209
JBrowse link
RNA polymerase II transcription initiation pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atxn7 ataxin 7 ISO RGD PMID:22426530 RGD:9681728 NCBI chr14:8,358,358...8,508,324
Ensembl chr14:8,362,461...8,508,323
JBrowse link
G Atxn7l3 ataxin 7-like 3 ISO RGD PMID:22426530 RGD:9681728 NCBI chr11:102,180,126...102,187,615
Ensembl chr11:102,180,126...102,187,457
JBrowse link
G Ccnh cyclin H ISO RGD PMID:21592869 RGD:9681726 NCBI chr13:85,337,504...85,361,850
Ensembl chr13:85,337,527...85,371,588
JBrowse link
G Cdk7 cyclin dependent kinase 7 ISO RGD PMID:21592869 RGD:9681726 NCBI chr13:100,833,532...100,867,454
Ensembl chr13:100,839,139...100,867,447
JBrowse link
G Dr1 down-regulator of transcription 1 ISO RGD PMID:22426530 RGD:9681728 NCBI chr 5:108,416,763...108,428,387
Ensembl chr 5:108,416,763...108,428,392
JBrowse link
G Eny2 ENY2 transcription and export complex 2 subunit ISO RGD PMID:22426530 RGD:9681728 NCBI chr15:44,291,488...44,301,652
Ensembl chr15:44,291,438...44,301,652
JBrowse link
G Ercc2 excision repair cross-complementing rodent repair deficiency, complementation group 2 ISO RGD PMID:21592869 RGD:9681726 NCBI chr 7:19,115,942...19,129,619
Ensembl chr 7:19,115,935...19,129,619
JBrowse link
G Ercc3 excision repair cross-complementing rodent repair deficiency, complementation group 3 ISO RGD PMID:21592869 RGD:9681726 NCBI chr18:32,373,357...32,403,206
Ensembl chr18:32,373,353...32,403,204
JBrowse link
G Ercc5 excision repair cross-complementing rodent repair deficiency, complementation group 5 ISO RGD PMID:21592869 RGD:9681726 NCBI chr 1:44,184,084...44,220,399
Ensembl chr 1:44,186,904...44,220,420
JBrowse link
G Gtf2a1 general transcription factor II A, 1 ISO RGD PMID:24120742 RGD:9681721 NCBI chr12:91,522,036...91,559,102
Ensembl chr12:91,522,036...91,557,261
JBrowse link
G Gtf2a2 general transcription factor II A, 2 ISO RGD PMID:24120742 RGD:9681721 NCBI chr 9:69,919,830...69,930,148
Ensembl chr 9:69,919,832...69,930,148
JBrowse link
G Gtf2b general transcription factor IIB ISO RGD PMID:24120742 RGD:9681721 NCBI chr 3:142,471,008...142,489,367
Ensembl chr 3:142,470,806...142,489,367
JBrowse link
G Gtf2e1 general transcription factor II E, polypeptide 1 (alpha subunit) ISO RGD PMID:24120742 RGD:9681721 NCBI chr16:37,330,158...37,360,151
Ensembl chr16:37,330,152...37,360,151
JBrowse link
G Gtf2e2 general transcription factor II E, polypeptide 2 (beta subunit) ISO RGD PMID:24120742 RGD:9681721 NCBI chr 8:34,221,942...34,267,201
Ensembl chr 8:34,221,861...34,267,201
JBrowse link
G Gtf2f1 general transcription factor IIF, polypeptide 1 ISO RGD PMID:24120742 RGD:9681721 NCBI chr17:57,310,402...57,318,398
Ensembl chr17:57,310,405...57,318,288
JBrowse link
G Gtf2f2 general transcription factor IIF, polypeptide 2 ISO RGD PMID:24120742 RGD:9681721 NCBI chr14:76,134,368...76,248,356
Ensembl chr14:76,134,377...76,248,305
JBrowse link
G Gtf2h1 general transcription factor II H, polypeptide 1 ISO RGD PMID:21592869 RGD:9681726 NCBI chr 7:46,445,518...46,473,224
Ensembl chr 7:46,445,527...46,473,224
JBrowse link
G Gtf2h2 general transcription factor II H, polypeptide 2 ISO RGD PMID:21592869 RGD:9681726 NCBI chr13:100,596,726...100,629,123
Ensembl chr13:100,596,726...100,629,087
JBrowse link
G Gtf2h3 general transcription factor IIH, polypeptide 3 ISO RGD PMID:21592869 RGD:9681726 NCBI chr 5:124,717,211...124,735,743
Ensembl chr 5:124,717,203...124,735,743
JBrowse link
G Gtf2h4 general transcription factor II H, polypeptide 4 ISO RGD PMID:21592869 RGD:9681726 NCBI chr17:35,978,624...35,984,607
Ensembl chr17:35,978,622...35,984,631
JBrowse link
G Gtf2h5 general transcription factor IIH, polypeptide 5 ISO RGD PMID:21592869 RGD:9681726 NCBI chr17:6,130,103...6,135,763
Ensembl chr17:6,130,061...6,136,792
JBrowse link
G Hcfc2 host cell factor C2 ISO RGD PMID:22426530 RGD:9681728 NCBI chr10:82,534,841...82,631,699
Ensembl chr10:82,531,994...82,578,262
JBrowse link
G Kat14 lysine acetyltransferase 14 ISO RGD PMID:22426530 RGD:9681728 NCBI chr 2:144,210,952...144,249,595
Ensembl chr 2:144,210,903...144,249,596
JBrowse link
G Kat2a K(lysine) acetyltransferase 2A ISO RGD PMID:22426530 RGD:9681728 NCBI chr11:100,595,572...100,603,293
Ensembl chr11:100,595,572...100,603,291
JBrowse link
G Kat2b K(lysine) acetyltransferase 2B ISO RGD PMID:22426530 RGD:9681728 NCBI chr17:53,873,802...53,979,749
Ensembl chr17:53,873,889...53,979,748
JBrowse link
G Mbip MAP3K12 binding inhibitory protein 1 ISO RGD PMID:22426530 RGD:9681728 NCBI chr12:56,375,091...56,392,681
Ensembl chr12:56,375,088...56,392,679
JBrowse link
G Mnat1 menage a trois 1 ISO RGD PMID:21592869 RGD:9681726 NCBI chr12:73,158,957...73,320,762
Ensembl chr12:73,170,491...73,320,762
JBrowse link
G Pole3 polymerase (DNA directed), epsilon 3 (p17 subunit) ISO RGD PMID:22426530 RGD:9681728 NCBI chr 4:62,440,889...62,443,305
Ensembl chr 4:62,440,886...62,443,305
JBrowse link
G Sgf29 SAGA complex associated factor 29 ISO RGD PMID:22426530 RGD:9681728 NCBI chr 7:126,247,558...126,271,951
Ensembl chr 7:126,248,481...126,272,097
JBrowse link
G Supt20 SPT20 SAGA complex component ISO RGD PMID:22426530 RGD:9681728 NCBI chr 3:54,600,181...54,636,184
Ensembl chr 3:54,600,228...54,636,187
JBrowse link
G Supt3 SPT3, SAGA and STAGA complex component ISO RGD PMID:22426530 RGD:9681728 NCBI chr17:45,088,005...45,430,181
Ensembl chr17:45,088,039...45,430,177
JBrowse link
G Supt7l SPT7-like, STAGA complex gamma subunit ISO RGD PMID:22426530 RGD:9681728 NCBI chr 5:31,671,913...31,684,106
Ensembl chr 5:31,671,908...31,685,151
JBrowse link
G Tada1 transcriptional adaptor 1 ISO RGD PMID:22426530 RGD:9681728 NCBI chr 1:166,206,736...166,221,190
Ensembl chr 1:166,206,666...166,221,190
JBrowse link
G Tada2a transcriptional adaptor 2A ISO RGD PMID:22426530 RGD:9681728 NCBI chr11:83,969,746...84,020,466
Ensembl chr11:83,969,746...84,020,426
JBrowse link
G Tada2b transcriptional adaptor 2B ISO RGD PMID:22426530 RGD:9681728 NCBI chr 5:36,631,014...36,641,629
Ensembl chr 5:36,631,014...36,641,629
JBrowse link
G Tada3 transcriptional adaptor 3 ISO RGD PMID:22426530 RGD:9681728 NCBI chr 6:113,343,594...113,354,799
Ensembl chr 6:113,342,986...113,354,844
JBrowse link
G Taf1 TATA-box binding protein associated factor 1 ISO RGD PMID:23146842 RGD:9681723 NCBI chr  X:100,576,335...100,644,635
Ensembl chr  X:100,576,279...100,644,640
JBrowse link
G Taf10 TATA-box binding protein associated factor 10 ISO RGD PMID:23146842 PMID:22426530 RGD:9681723, RGD:9681728 NCBI chr 7:105,392,101...105,393,550
Ensembl chr 7:105,388,600...105,393,568
JBrowse link
G Taf11 TATA-box binding protein associated factor 11 ISO RGD PMID:23146842 RGD:9681723 NCBI chr17:28,120,096...28,128,723
Ensembl chr17:28,120,096...28,128,818
JBrowse link
G Taf12 TATA-box binding protein associated factor 12 ISO RGD PMID:23146842 PMID:22426530 RGD:9681723, RGD:9681728 NCBI chr 4:132,001,667...132,020,640
Ensembl chr 4:132,001,686...132,023,077
JBrowse link
G Taf13 TATA-box binding protein associated factor 13 ISO RGD PMID:23146842 RGD:9681723 NCBI chr 3:108,479,015...108,489,384
Ensembl chr 3:108,479,014...108,490,538
JBrowse link
G Taf15 TATA-box binding protein associated factor 15 ISO RGD PMID:23146842 RGD:9681723 NCBI chr11:83,363,897...83,397,569
Ensembl chr11:83,363,912...83,397,569
JBrowse link
G Taf2 TATA-box binding protein associated factor 2 ISO RGD PMID:23146842 RGD:9681723 NCBI chr15:54,878,525...54,935,580
Ensembl chr15:54,878,527...54,935,548
JBrowse link
G Taf3 TATA-box binding protein associated factor 3 ISO RGD PMID:23146842 RGD:9681723 NCBI chr 2:9,919,363...10,053,420
Ensembl chr 2:9,919,363...10,053,407
JBrowse link
G Taf4 TATA-box binding protein associated factor 4 ISO RGD PMID:23146842 RGD:9681723 NCBI chr 2:179,553,945...179,618,519
Ensembl chr 2:179,553,945...179,618,439
JBrowse link
G Taf5 TATA-box binding protein associated factor 5 ISO RGD PMID:23146842 RGD:9681723 NCBI chr19:47,056,187...47,071,918
Ensembl chr19:47,056,185...47,071,918
JBrowse link
G Taf5l TATA-box binding protein associated factor 5 like ISO RGD PMID:22426530 RGD:9681728 NCBI chr 8:124,723,049...124,748,136
Ensembl chr 8:124,723,057...124,748,136
JBrowse link
G Taf6 TATA-box binding protein associated factor 6 ISO RGD PMID:23146842 RGD:9681723 NCBI chr 5:138,176,879...138,185,713
Ensembl chr 5:138,176,879...138,185,713
JBrowse link
G Taf6l TATA-box binding protein associated factor 6 like ISO RGD PMID:22426530 RGD:9681728 NCBI chr19:8,751,718...8,763,781
Ensembl chr19:8,751,851...8,763,781
JBrowse link
G Taf7 TATA-box binding protein associated factor 7 ISO RGD PMID:23146842 RGD:9681723 NCBI chr18:37,773,544...37,777,257
Ensembl chr18:37,773,544...37,777,257
JBrowse link
G Taf8 TATA-box binding protein associated factor 8 ISO RGD PMID:23146842 RGD:9681723 NCBI chr17:47,794,289...47,813,216
Ensembl chr17:47,794,289...47,813,217
JBrowse link
G Taf9 TATA-box binding protein associated factor 9 ISO RGD PMID:23146842 PMID:22426530 RGD:9681723, RGD:9681728 NCBI chr13:100,787,851...100,792,568
Ensembl chr13:100,788,087...100,792,568
Ensembl chr13:100,788,087...100,792,568
JBrowse link
G Tbp TATA box binding protein ISO RGD PMID:24120742 PMID:23146842 RGD:9681721, RGD:9681723 NCBI chr17:15,720,150...15,737,689
Ensembl chr17:15,720,150...15,748,641
JBrowse link
G Trrap transformation/transcription domain-associated protein ISO RGD PMID:22426530 RGD:9681728 NCBI chr 5:144,704,547...144,796,588
Ensembl chr 5:144,704,542...144,796,588
JBrowse link
G Usp22 ubiquitin specific peptidase 22 ISO RGD PMID:22426530 RGD:9681728 NCBI chr11:61,042,607...61,065,885
Ensembl chr11:61,042,611...61,065,881
JBrowse link
G Wdr5 WD repeat domain 5 ISO RGD PMID:22426530 RGD:9681728 NCBI chr 2:27,405,159...27,426,547
Ensembl chr 2:27,405,169...27,426,547
JBrowse link
G Yeats2 YEATS domain containing 2 ISO RGD PMID:22426530 RGD:9681728 NCBI chr16:19,959,803...20,051,323
Ensembl chr16:19,959,813...20,051,323
JBrowse link
G Zzz3 zinc finger, ZZ domain containing 3 ISO RGD PMID:22426530 RGD:9681728 NCBI chr 3:152,101,110...152,168,463
Ensembl chr 3:152,101,110...152,168,463
JBrowse link
RNA polymerase II transcription termination pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clp1 CLP1, cleavage and polyadenylation factor I subunit ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 2:84,553,466...84,557,631
Ensembl chr 2:84,552,448...84,557,694
JBrowse link
G Cpsf1 cleavage and polyadenylation specific factor 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr15:76,480,008...76,491,861
Ensembl chr15:76,480,003...76,491,791
JBrowse link
G Cpsf2 cleavage and polyadenylation specific factor 2 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr12:101,940,345...101,972,252
Ensembl chr12:101,942,247...101,972,683
JBrowse link
G Cpsf3 cleavage and polyadenylation specificity factor 3 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr12:21,336,298...21,365,057
Ensembl chr12:21,335,392...21,365,057
JBrowse link
G Cpsf4 cleavage and polyadenylation specific factor 4 ISO RGD PMID:21957020 PMID:24243805 PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742, RGD:9681741, RGD:9681742 NCBI chr 5:145,104,023...145,118,851
Ensembl chr 5:145,104,023...145,118,851
JBrowse link
G Cpsf6 cleavage and polyadenylation specific factor 6 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr10:117,180,572...117,212,903
Ensembl chr10:117,180,578...117,215,920
JBrowse link
G Cpsf7 cleavage and polyadenylation specific factor 7 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr19:10,502,594...10,525,099
Ensembl chr19:10,502,630...10,525,017
JBrowse link
G Cstf1 cleavage stimulation factor, 3' pre-RNA, subunit 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 2:172,212,591...172,224,369
Ensembl chr 2:172,212,601...172,224,368
JBrowse link
G Cstf2 cleavage stimulation factor, 3' pre-RNA subunit 2 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr  X:132,959,925...132,987,571
Ensembl chr  X:132,959,936...132,987,568
JBrowse link
G Cstf2t cleavage stimulation factor, 3' pre-RNA subunit 2, tau ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr19:31,060,241...31,063,992
Ensembl chr19:31,060,237...31,064,469
JBrowse link
G Cstf3 cleavage stimulation factor, 3' pre-RNA, subunit 3 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 2:104,420,829...104,495,770
Ensembl chr 2:104,420,868...104,495,774
JBrowse link
G Dxo decapping exoribonuclease ISO RGD PMID:21957020 RGD:9681741 NCBI chr17:35,055,998...35,058,162
Ensembl chr17:35,055,995...35,058,209
JBrowse link
G Fip1l1 factor interacting with PAPOLA and CPSF1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 5:74,695,774...74,759,451
Ensembl chr 5:74,696,110...74,759,461
JBrowse link
G Nudt21 nudix hydrolase 21 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 8:94,746,031...94,763,667
Ensembl chr 8:94,742,124...94,763,659
JBrowse link
G Pcf11 PCF11 cleavage and polyadenylation factor subunit ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 7:92,292,666...92,319,284
Ensembl chr 7:92,292,751...92,319,142
JBrowse link
G Sympk symplekin ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr 7:18,758,321...18,788,542
Ensembl chr 7:18,758,302...18,788,543
JBrowse link
G Wdr33 WD repeat domain 33 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741, RGD:9681742 NCBI chr18:31,937,079...32,042,040
Ensembl chr18:31,937,143...32,040,450
JBrowse link
G Xrn2 5'-3' exoribonuclease 2 ISO RGD PMID:21957020 RGD:9681741 NCBI chr 2:146,854,672...146,919,922
Ensembl chr 2:146,854,916...146,919,920
JBrowse link
spliceosome pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aar2 AAR2 splicing factor homolog ISO RGD PMID:23592432 RGD:9686090 NCBI chr 2:156,389,496...156,410,892
Ensembl chr 2:156,389,504...156,410,892
JBrowse link
G Acin1 apoptotic chromatin condensation inducer 1 IEA KEGG mmu:03040 NCBI chr14:54,879,618...54,924,422
Ensembl chr14:54,879,618...54,924,388
JBrowse link
G Alyreffm10 Aly/REF export factor family member 10 IEA KEGG mmu:03040 NCBI chr10:104,029,903...104,032,383
Ensembl chr10:104,029,903...104,032,383
JBrowse link
G Alyreffm2 Aly/REF export factor family member 2 IEA KEGG mmu:03040 NCBI chr 1:31,326,164...31,327,132
Ensembl chr 1:31,326,026...31,326,787
JBrowse link
G Aqr aquarius IEA
ISO
KEGG
RGD
PMID:23742842 mmu:03040, RGD:9686094 NCBI chr 2:113,931,642...114,005,788
Ensembl chr 2:113,931,651...114,017,505
JBrowse link
G Bcas2 BCAS2 pre-mRNA processing factor IEA
ISO
KEGG
RGD
PMID:23742842 mmu:03040, RGD:9686094 NCBI chr 3:103,078,971...103,086,479
Ensembl chr 3:103,078,971...103,086,482
JBrowse link
G Bud31 BUD31 homolog ISO RGD PMID:23742842 RGD:9686094 NCBI chr 5:145,077,186...145,084,888
Ensembl chr 5:145,077,172...145,084,888
JBrowse link
G Ccdc12 coiled-coil domain containing 12 IEA
ISO
KEGG
RGD
PMID:23742842 mmu:03040, RGD:9686094 NCBI chr 9:110,483,376...110,540,661
Ensembl chr 9:110,485,571...110,540,674
JBrowse link
G Cdc40 cell division cycle 40 IEA KEGG mmu:03040 NCBI chr10:40,707,617...40,759,139
Ensembl chr10:40,707,617...40,759,307
JBrowse link
G Cdc5l cell division cycle 5-like IEA
ISO
KEGG
RGD
PMID:23742842 mmu:03040, RGD:9686094 NCBI chr17:45,702,809...45,744,633
Ensembl chr17:45,702,810...45,744,663
JBrowse link
G Cherp calcium homeostasis endoplasmic reticulum protein IEA KEGG mmu:03040 NCBI chr 8:73,214,327...73,229,077
Ensembl chr 8:73,214,333...73,229,070
JBrowse link
G Crnkl1 crooked neck pre-mRNA splicing factor 1 IEA
ISO
KEGG
RGD
PMID:23742842 mmu:03040, RGD:9686094 NCBI chr 2:145,759,402...145,776,620
Ensembl chr 2:145,759,399...145,776,934
JBrowse link
G Ctnnbl1 catenin, beta like 1 IEA
ISO
KEGG
RGD
PMID:23742842 mmu:03040, RGD:9686094 NCBI chr 2:157,579,321...157,733,823
Ensembl chr 2:157,579,321...157,733,534
JBrowse link
G Cwc15 CWC15 spliceosome-associated protein IEA
ISO
KEGG
RGD
PMID:23742842 mmu:03040, RGD:9686094 NCBI chr 9:14,411,876...14,421,920
Ensembl chr 9:14,411,913...14,421,873
JBrowse link
G Ddx23 DEAD box helicase 23 IEA
ISO
KEGG
RGD
PMID:19239890 PMID:23454554 mmu:03040, RGD:9686089, RGD:9686093 NCBI chr15:98,543,012...98,560,808
Ensembl chr15:98,543,015...98,560,775
JBrowse link
G Ddx39b DEAD box helicase 39b IEA
ISO
KEGG
RGD
PMID:23454554 mmu:03040, RGD:9686093 NCBI chr17:35,460,722...35,472,683
Ensembl chr17:35,460,722...35,472,683
JBrowse link
G Ddx42 DEAD box helicase 42 IEA
ISO
KEGG
RGD
PMID:17537823 mmu:03040, RGD:9686091 NCBI chr11:106,107,715...106,139,966
Ensembl chr11:106,107,752...106,139,965
JBrowse link
G Ddx46 DEAD box helicase 46 IEA
ISO
KEGG
RGD
PMID:23454554 mmu:03040, RGD:9686093 NCBI chr13:55,782,790...55,829,080
Ensembl chr13:55,782,841...55,829,069
JBrowse link
G Ddx5 DEAD box helicase 5 IEA KEGG mmu:03040 NCBI chr11:106,671,181...106,680,011
Ensembl chr11:106,671,181...106,680,011
JBrowse link
G Dhx15 DEAH-box helicase 15 IEA
ISO
KEGG
RGD
PMID:23454554 mmu:03040, RGD:9686093 NCBI chr 5:52,307,545...52,347,888
Ensembl chr 5:52,307,545...52,347,856
JBrowse link
G Dhx16 DEAH-box helicase 16 IEA
ISO
KEGG
RGD
PMID:23454554 mmu:03040, RGD:9686093 NCBI chr17:36,190,657...36,203,562
Ensembl chr17:36,190,711...36,203,562
JBrowse link
G Dhx38 DEAH-box helicase 38 IEA
ISO
KEGG
RGD
PMID:23454554 mmu:03040, RGD:9686093 NCBI chr 8:110,274,631...110,292,493
Ensembl chr 8:110,274,643...110,292,493
JBrowse link
G Dhx8 DEAH-box helicase 8 IEA
ISO
KEGG
RGD
PMID:23454554 mmu:03040, RGD:9686093 NCBI chr11:101,623,782...101,658,184
Ensembl chr11:101,623,745...101,658,184
JBrowse link
G Eftud2 elongation factor Tu GTP binding domain containing 2 IEA
ISO
KEGG
RGD
PMID:23454554 PMID:23592432 mmu:03040, RGD:9686093, RGD:9686090 NCBI chr11:102,729,298...102,771,999
Ensembl chr11:102,729,299...102,771,811
JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 IEA
ISO
KEGG
RGD
PMID:15145352 mmu:03040, RGD:9686404 NCBI chr11:119,179,189...119,190,869
Ensembl chr11:119,179,189...119,190,915
JBrowse link
G Eif4a3l1 eukaryotic translation initiation factor 4A3 like 1 IEA KEGG mmu:03040 NCBI chr 6:136,304,537...136,306,981
Ensembl chr 6:136,304,537...136,306,981
JBrowse link
G Gm10146 predicted gene 10146 IEA KEGG mmu:03040 NCBI chr10:78,229,138...78,229,590
Ensembl chr10:78,229,154...78,229,462
JBrowse link
G Gm11847 predicted gene 11847 IEA KEGG mmu:03040 NCBI chr 4:12,232,772...12,238,024
Ensembl chr 4:12,232,833...12,233,951
JBrowse link
G Gm12183 predicted gene 12183 IEA KEGG mmu:03040 NCBI chr11:48,642,436...48,644,703
Ensembl chr11:48,642,694...48,644,541
JBrowse link
G Gm12966 predicted gene 12966 IEA KEGG mmu:03040 NCBI chr 4:129,792,742...129,794,228
Ensembl chr 4:129,792,886...129,793,695
JBrowse link
G Gm5576 predicted pseudogene 5576 IEA KEGG mmu:03040 NCBI chr 6:78,192,861...78,194,152
Ensembl chr 6:78,192,861...78,194,096
JBrowse link
G Gm5616 predicted gene 5616 IEA KEGG mmu:03040 NCBI chr 9:48,361,591...48,362,846
Ensembl chr 9:48,361,700...48,362,083
JBrowse link
G Gm8186 predicted gene 8186 IEA KEGG mmu:03040 NCBI chr17:26,317,846...26,318,231
Ensembl chr17:26,317,965...26,318,195
JBrowse link
G Hnrnpa0 heterogeneous nuclear ribonucleoprotein A0 ISO RGD PMID:17537823 RGD:9686091 NCBI chr13:58,273,693...58,276,370
Ensembl chr13:58,273,693...58,276,370
JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 IEA
ISO
KEGG
RGD
PMID:17537823 PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr15:103,148,840...103,155,119
Ensembl chr15:103,148,859...103,155,119
JBrowse link
G Hnrnpa1l2-ps2 heterogeneous nuclear ribonucleoprotein A1-like 2, pseudogene 2 IEA KEGG mmu:03040 NCBI chr15:22,713,906...22,715,070
Ensembl chr15:22,713,954...22,714,916
JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 6:51,437,414...51,448,054
Ensembl chr 6:51,437,912...51,446,874
JBrowse link
G Hnrnpa3 heterogeneous nuclear ribonucleoprotein A3 IEA
ISO
KEGG
RGD
PMID:17537823 PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr 2:75,489,416...75,499,751
Ensembl chr 2:75,489,605...75,499,751
JBrowse link
G Hnrnpab heterogeneous nuclear ribonucleoprotein A/B ISO RGD PMID:17537823 RGD:9686091 NCBI chr11:51,490,927...51,497,708
Ensembl chr11:51,490,927...51,497,674
JBrowse link
G Hnrnpc heterogeneous nuclear ribonucleoprotein C IEA
ISO
KEGG
RGD
PMID:17537823 PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr14:52,310,834...52,341,462
Ensembl chr14:52,310,834...52,341,485
JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D ISO RGD PMID:17537823 RGD:9686091 NCBI chr 5:100,103,794...100,126,926
Ensembl chr 5:100,103,794...100,126,797
JBrowse link
G Hnrnph1 heterogeneous nuclear ribonucleoprotein H1 ISO RGD PMID:17537823 RGD:9686091 NCBI chr11:50,266,084...50,277,355
Ensembl chr11:50,267,817...50,277,355
JBrowse link
G Hnrnph3 heterogeneous nuclear ribonucleoprotein H3 ISO RGD PMID:17537823 RGD:9686091 NCBI chr10:62,850,443...62,859,764
Ensembl chr10:62,850,443...62,859,996
JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K IEA
ISO
KEGG
RGD
PMID:17537823 PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr13:58,538,946...58,551,157
Ensembl chr13:58,538,956...58,551,157
JBrowse link
G Hnrnpl heterogeneous nuclear ribonucleoprotein L ISO RGD PMID:17537823 RGD:9686091 NCBI chr 7:28,507,971...28,521,693
Ensembl chr 7:28,507,966...28,521,691
JBrowse link
G Hnrnpm heterogeneous nuclear ribonucleoprotein M IEA
ISO
KEGG
RGD
PMID:17537823 PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr17:33,865,207...33,904,432
Ensembl chr17:33,865,207...33,905,834
JBrowse link
G Hnrnpr heterogeneous nuclear ribonucleoprotein R ISO RGD PMID:17537823 RGD:9686091 NCBI chr 4:136,038,230...136,086,758
Ensembl chr 4:136,038,253...136,086,758
JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U IEA
ISO
KEGG
RGD
PMID:17537823 PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr 1:178,148,673...178,170,063
Ensembl chr 1:178,148,673...178,165,362
JBrowse link
G Hspa1a heat shock protein 1A IEA KEGG mmu:03040 NCBI chr17:35,188,335...35,191,132
Ensembl chr17:35,188,166...35,191,132
JBrowse link
G Hspa1b heat shock protein 1B IEA KEGG mmu:03040 NCBI chr17:35,175,405...35,178,214
Ensembl chr17:35,175,412...35,178,214
JBrowse link
G Hspa1l heat shock protein 1-like IEA KEGG mmu:03040 NCBI chr17:35,191,679...35,198,204
Ensembl chr17:35,191,679...35,198,261
JBrowse link
G Hspa2 heat shock protein 2 IEA KEGG mmu:03040 NCBI chr12:76,450,688...76,453,712
Ensembl chr12:76,450,950...76,453,712
JBrowse link
G Hspa8 heat shock protein 8 IEA
ISO
KEGG
RGD
PMID:23742842 mmu:03040, RGD:9686094 NCBI chr 9:40,712,572...40,716,498
Ensembl chr 9:40,712,280...40,721,383
JBrowse link
G Isy1 ISY1 splicing factor homolog IEA
ISO
KEGG
RGD
PMID:23742842 mmu:03040, RGD:9686094 NCBI chr 6:87,795,429...87,815,723
Ensembl chr 6:87,791,251...87,815,780
JBrowse link
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
ISO
KEGG
RGD
PMID:17537823 PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr17:35,200,830...35,204,867
Ensembl chr17:35,200,838...35,204,867
JBrowse link
G Lsm3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
ISO
KEGG
RGD
PMID:17537823 PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr 6:91,493,017...91,499,602
Ensembl chr 6:91,492,910...91,499,607
JBrowse link
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
ISO
KEGG
RGD
PMID:17537823 PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr 8:71,124,663...71,131,402
Ensembl chr 8:71,125,898...71,131,402
JBrowse link
G Lsm5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
ISO
KEGG
RGD
PMID:17537823 PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr 6:56,678,048...56,681,684
Ensembl chr 6:56,678,048...56,681,695
JBrowse link
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
ISO
KEGG
RGD
PMID:17537823 PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr 8:79,531,497...79,547,781
Ensembl chr 8:79,531,494...79,547,769
JBrowse link
G Lsm7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr10:80,688,659...80,691,043
Ensembl chr10:80,688,655...80,691,043
JBrowse link
G Lsm8 LSM8 homolog, U6 small nuclear RNA associated IEA
ISO
KEGG
RGD
PMID:17537823 PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr 6:18,848,634...18,854,051
Ensembl chr 6:18,848,578...18,855,750
JBrowse link
G Magoh mago homolog, exon junction complex core component IEA KEGG mmu:03040 NCBI chr 4:107,736,952...107,744,621
Ensembl chr 4:107,736,952...107,744,621
JBrowse link
G Magohb mago homolog B, exon junction complex core component IEA
ISO
KEGG
RGD
PMID:15145352 mmu:03040, RGD:9686404 NCBI chr 6:131,261,351...131,270,207
Ensembl chr 6:131,261,351...131,270,207
JBrowse link
G Mbnl1 muscleblind like splicing regulator 1 ISO RGD PMID:23498935 RGD:9686382 NCBI chr 3:60,380,209...60,537,171
Ensembl chr 3:60,380,251...60,537,171
JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 IEA KEGG mmu:03040 NCBI chr16:31,767,364...31,777,290
Ensembl chr16:31,767,331...31,780,599
JBrowse link
G Pcbp1 poly(rC) binding protein 1 IEA KEGG mmu:03040 NCBI chr 6:86,501,462...86,503,171
Ensembl chr 6:86,501,474...86,503,303
JBrowse link
G Phf5a PHD finger protein 5A IEA KEGG mmu:03040 NCBI chr15:81,748,717...81,756,093
Ensembl chr15:81,748,721...81,756,112
JBrowse link
G Plrg1 pleiotropic regulator 1 IEA
ISO
KEGG
RGD
PMID:23742842 mmu:03040, RGD:9686094 NCBI chr 3:82,962,845...82,979,598
Ensembl chr 3:82,962,829...82,979,662
JBrowse link
G Pnn pinin ISO RGD PMID:15145352 RGD:9686404 NCBI chr12:59,113,705...59,120,803
Ensembl chr12:59,113,670...59,120,784
JBrowse link
G Ppie peptidylprolyl isomerase E (cyclophilin E) IEA
ISO
KEGG
RGD
PMID:18544344 PMID:23742842 mmu:03040, RGD:9686376, RGD:9686094 NCBI chr 4:123,020,907...123,033,783
Ensembl chr 4:123,020,908...123,033,744
JBrowse link
G Ppig peptidyl-prolyl isomerase G (cyclophilin G) ISO RGD PMID:18544344 RGD:9686376 NCBI chr 2:69,553,152...69,584,356
Ensembl chr 2:69,552,889...69,584,356
JBrowse link
G Ppih peptidyl prolyl isomerase H IEA
ISO
KEGG
RGD
PMID:18544344 mmu:03040, RGD:9686376 NCBI chr 4:119,157,207...119,177,720
Ensembl chr 4:119,157,207...119,177,743
JBrowse link
G Ppil1 peptidylprolyl isomerase (cyclophilin)-like 1 IEA
ISO
KEGG
RGD
PMID:18544344 PMID:23742842 mmu:03040, RGD:9686376, RGD:9686094 NCBI chr17:29,469,809...29,482,945
Ensembl chr17:29,469,777...29,483,160
JBrowse link
G Ppil2 peptidylprolyl isomerase (cyclophilin)-like 2 ISO RGD PMID:18544344 RGD:9686376 NCBI chr16:16,904,419...16,929,126
Ensembl chr16:16,904,419...16,929,121
JBrowse link
G Ppil3 peptidylprolyl isomerase (cyclophilin)-like 3 ISO RGD PMID:18544344 RGD:9686376 NCBI chr 1:58,470,152...58,484,878
Ensembl chr 1:58,470,153...58,484,645
JBrowse link
G Pqbp1 polyglutamine binding protein 1 IEA KEGG mmu:03040 NCBI chr  X:7,760,759...7,765,469
Ensembl chr  X:7,760,758...7,765,508
JBrowse link
G Prpf18 pre-mRNA processing factor 18 IEA
ISO
KEGG
RGD
PMID:24452469 mmu:03040, RGD:9686092 NCBI chr 2:4,626,869...4,656,946
Ensembl chr 2:4,626,869...4,656,924
JBrowse link
G Prpf19 pre-mRNA processing factor 19 IEA
ISO
KEGG
RGD
PMID:23742842 mmu:03040, RGD:9686094 NCBI chr19:10,872,595...10,886,923
Ensembl chr19:10,872,595...10,886,923
JBrowse link
G Prpf3 pre-mRNA processing factor 3 IEA
ISO
KEGG
RGD
PMID:19239890 mmu:03040, RGD:9686089 NCBI chr 3:95,737,436...95,763,197
Ensembl chr 3:95,737,436...95,763,197
JBrowse link
G Prpf31 pre-mRNA processing factor 31 IEA
ISO
KEGG
RGD
PMID:19239890 mmu:03040, RGD:9686089 NCBI chr 7:3,632,984...3,645,484
Ensembl chr 7:3,632,984...3,645,485
JBrowse link
G Prpf38a PRP38 pre-mRNA processing factor 38 (yeast) domain containing A IEA KEGG mmu:03040 NCBI chr 4:108,422,064...108,436,533
Ensembl chr 4:108,420,369...108,436,533
JBrowse link
G Prpf38b PRP38 pre-mRNA processing factor 38 (yeast) domain containing B IEA KEGG mmu:03040 NCBI chr 3:108,810,121...108,819,055
Ensembl chr 3:108,810,121...108,819,043
JBrowse link
G Prpf4 pre-mRNA processing factor 4 IEA
ISO
KEGG
RGD
PMID:19239890 mmu:03040, RGD:9686089 NCBI chr 4:62,327,002...62,345,227
Ensembl chr 4:62,327,034...62,345,227
JBrowse link
G Prpf40a pre-mRNA processing factor 40A IEA KEGG mmu:03040 NCBI chr 2:53,024,714...53,081,450
Ensembl chr 2:53,024,716...53,081,714
JBrowse link
G Prpf40b pre-mRNA processing factor 40B IEA KEGG mmu:03040 NCBI chr15:99,192,957...99,214,899
Ensembl chr15:99,192,968...99,214,899
JBrowse link
G Prpf6 pre-mRNA splicing factor 6 IEA
ISO
KEGG
RGD
PMID:19239890 mmu:03040, RGD:9686089 NCBI chr 2:181,243,112...181,297,454
Ensembl chr 2:181,233,661...181,297,453
JBrowse link
G Prpf8 pre-mRNA processing factor 8 IEA
ISO
KEGG
RGD
PMID:23592432 mmu:03040, RGD:9686090 NCBI chr11:75,377,603...75,400,273
Ensembl chr11:75,377,642...75,400,275
JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 ISO RGD PMID:23385723 RGD:9686381 NCBI chr10:79,690,502...79,700,269
Ensembl chr10:79,690,261...79,700,605
JBrowse link
G Ptbp2 polypyrimidine tract binding protein 2 ISO RGD PMID:23498935 RGD:9686382 NCBI chr 3:119,512,390...119,578,296
Ensembl chr 3:119,512,391...119,578,115
JBrowse link
G Puf60 poly-U binding splicing factor 60 IEA KEGG mmu:03040 NCBI chr15:75,942,031...75,954,386
Ensembl chr15:75,942,031...75,952,773
JBrowse link
G Qki quaking, KH domain containing RNA binding ISO RGD PMID:23385723 RGD:9686381 NCBI chr17:10,425,480...10,538,706
Ensembl chr17:10,421,530...10,538,783
JBrowse link
G Rbm17 RNA binding motif protein 17 IEA KEGG mmu:03040 NCBI chr 2:11,590,250...11,608,061
Ensembl chr 2:11,590,248...11,608,964
JBrowse link
G Rbm22 RNA binding motif protein 22 IEA
ISO
KEGG
RGD
PMID:23742842 mmu:03040, RGD:9686094 NCBI chr18:60,693,858...60,705,801
Ensembl chr18:60,693,808...60,705,882
JBrowse link
G Rbm25 RNA binding motif protein 25 IEA KEGG mmu:03040 NCBI chr12:83,678,990...83,729,901
Ensembl chr12:83,678,010...83,729,897
JBrowse link
G Rbm8a RNA binding motif protein 8a IEA
ISO
KEGG
RGD
PMID:15145352 mmu:03040, RGD:9686404 NCBI chr 3:96,537,244...96,541,107
Ensembl chr 3:96,537,249...96,541,107
JBrowse link
G Rbm8a2 RNA binding motif protein 8A2 IEA KEGG mmu:03040 NCBI chr 1:175,805,784...175,806,509
Ensembl chr 1:175,805,343...175,806,680
JBrowse link
G Rbmx RNA binding motif protein, X chromosome IEA
ISO
KEGG
RGD
PMID:17537823 PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr  X:56,428,708...56,438,405
Ensembl chr  X:56,428,890...56,438,396
JBrowse link
G Rnps1 RNA binding protein with serine rich domain 1 ISO RGD PMID:15145352 RGD:9686404 NCBI chr17:24,633,620...24,644,872
Ensembl chr17:24,633,539...24,644,875
JBrowse link
G Sart1 squamous cell carcinoma antigen recognized by T cells 1 IEA KEGG mmu:03040 NCBI chr19:5,427,551...5,438,731
Ensembl chr19:5,427,551...5,438,731
JBrowse link
G Sart3 squamous cell carcinoma antigen recognized by T cells 3 ISO RGD PMID:23592432 RGD:9686090 NCBI chr 5:113,880,505...113,910,461
Ensembl chr 5:113,880,507...113,910,571
JBrowse link
G Sf1 splicing factor 1 ISO RGD PMID:19239890 RGD:9686089 NCBI chr19:6,413,952...6,428,060
Ensembl chr19:6,413,720...6,428,060
JBrowse link
G Sf3a1 splicing factor 3a, subunit 1 IEA
ISO
KEGG
RGD
PMID:17537823 mmu:03040, RGD:9686091 NCBI chr11:4,110,354...4,132,541
Ensembl chr11:4,110,350...4,132,541
JBrowse link
G Sf3a2 splicing factor 3a, subunit 2 IEA
ISO
KEGG
RGD
PMID:17537823 mmu:03040, RGD:9686091 NCBI chr10:80,634,569...80,640,756
Ensembl chr10:80,634,032...80,640,758
JBrowse link
G Sf3a3 splicing factor 3a, subunit 3 IEA
ISO
KEGG
RGD
PMID:17537823 mmu:03040, RGD:9686091 NCBI chr 4:124,602,966...124,626,234
Ensembl chr 4:124,608,569...124,626,253
JBrowse link
G Sf3b1 splicing factor 3b, subunit 1 IEA
ISO
KEGG
RGD
PMID:17537823 mmu:03040, RGD:9686091 NCBI chr 1:55,024,328...55,066,660
Ensembl chr 1:55,024,328...55,066,640
JBrowse link
G Sf3b2 splicing factor 3b, subunit 2 IEA
ISO
KEGG
RGD
PMID:17537823 mmu:03040, RGD:9686091 NCBI chr19:5,323,949...5,345,485
Ensembl chr19:5,323,960...5,345,483
JBrowse link
G Sf3b3 splicing factor 3b, subunit 3 IEA
ISO
KEGG
RGD
PMID:17537823 mmu:03040, RGD:9686091 NCBI chr 8:111,537,123...111,573,578
Ensembl chr 8:111,536,871...111,573,419
JBrowse link
G Sf3b4 splicing factor 3b, subunit 4 IEA
ISO
KEGG
RGD
PMID:17537823 mmu:03040, RGD:9686091 NCBI chr 3:96,079,822...96,084,880
Ensembl chr 3:96,079,648...96,084,880
JBrowse link
G Sf3b5 splicing factor 3b, subunit 5 IEA
ISO
KEGG
RGD
PMID:17537823 mmu:03040, RGD:9686091 NCBI chr10:12,884,194...12,884,927
Ensembl chr10:12,881,087...12,884,927
JBrowse link
G Sf3b6 splicing factor 3B, subunit 6 IEA
ISO
KEGG
RGD
PMID:17537823 mmu:03040, RGD:9686091 NCBI chr12:4,867,608...4,877,659
Ensembl chr12:4,867,544...4,877,659
JBrowse link
G Slu7 SLU7 splicing factor homolog (S. cerevisiae) IEA
ISO
KEGG
RGD
PMID:24452469 mmu:03040, RGD:9686092 NCBI chr11:43,324,550...43,338,809
Ensembl chr11:43,324,571...43,338,808
JBrowse link
G Smndc1 survival motor neuron domain containing 1 IEA KEGG mmu:03040 NCBI chr19:53,367,603...53,379,065
Ensembl chr19:53,367,821...53,379,009
JBrowse link
G Snrnp200 small nuclear ribonucleoprotein 200 (U5) IEA
ISO
KEGG
RGD
PMID:23454554 PMID:23592432 mmu:03040, RGD:9686093, RGD:9686090 NCBI chr 2:127,050,306...127,082,373
Ensembl chr 2:127,050,306...127,082,371
JBrowse link
G Snrnp27 small nuclear ribonucleoprotein 27 (U4/U6.U5) IEA KEGG mmu:03040 NCBI chr 6:86,652,151...86,661,473
Ensembl chr 6:86,652,133...86,661,504
JBrowse link
G Snrnp40 small nuclear ribonucleoprotein 40 (U5) IEA KEGG mmu:03040 NCBI chr 4:130,253,925...130,283,826
Ensembl chr 4:130,253,925...130,283,819
JBrowse link
G Snrnp70 small nuclear ribonucleoprotein 70 (U1) IEA
ISO
KEGG
RGD
PMID:23592432 mmu:03040, RGD:9686090 NCBI chr 7:45,025,878...45,045,177
Ensembl chr 7:45,025,877...45,045,166
JBrowse link
G Snrpa small nuclear ribonucleoprotein polypeptide A IEA
ISO
KEGG
RGD
PMID:23592432 mmu:03040, RGD:9686090 NCBI chr 7:26,886,431...26,895,696
Ensembl chr 7:26,886,430...26,895,696
JBrowse link
G Snrpa1 small nuclear ribonucleoprotein polypeptide A' IEA
ISO
KEGG
RGD
PMID:17537823 mmu:03040, RGD:9686091 NCBI chr 7:65,710,084...65,724,335
Ensembl chr 7:65,708,751...65,724,335
JBrowse link
G Snrpb small nuclear ribonucleoprotein B IEA
ISO
KEGG
RGD
PMID:17537823 PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr 2:130,013,560...130,031,184
Ensembl chr 2:130,013,555...130,021,323
JBrowse link
G Snrpb2 U2 small nuclear ribonucleoprotein B IEA
ISO
KEGG
RGD
PMID:17537823 mmu:03040, RGD:9686091 NCBI chr 2:142,904,989...142,913,972
Ensembl chr 2:142,904,959...142,914,773
JBrowse link
G Snrpc U1 small nuclear ribonucleoprotein C IEA
ISO
KEGG
RGD
PMID:23592432 mmu:03040, RGD:9686090 NCBI chr17:28,059,002...28,070,942
Ensembl chr17:28,057,124...28,070,942
JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 IEA
ISO
KEGG
RGD
PMID:17537823 PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr18:10,617,796...10,628,230
Ensembl chr18:10,617,775...10,642,079
JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 IEA
ISO
KEGG
RGD
PMID:17537823 PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr 7:18,883,370...18,886,659
Ensembl chr 7:18,883,647...18,887,467
JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 IEA
ISO
KEGG
RGD
PMID:17537823 PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr10:75,353,852...75,371,300
Ensembl chr10:75,353,385...75,373,215
JBrowse link
G Snrpe small nuclear ribonucleoprotein E IEA
ISO
KEGG
RGD
PMID:17537823 PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr 1:133,531,609...133,538,018
Ensembl chr 1:133,531,609...133,538,029
JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F IEA
ISO
KEGG
RGD
PMID:17537823 PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr10:93,418,891...93,425,520
Ensembl chr10:93,418,891...93,425,568
JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G IEA
ISO
KEGG
RGD
PMID:17537823 PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr 6:86,348,522...86,355,884
Ensembl chr 6:86,348,286...86,356,310
JBrowse link
G Snu13 SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5) IEA
ISO
KEGG
RGD
PMID:19239890 mmu:03040, RGD:9686089 NCBI chr15:81,925,546...81,931,799
Ensembl chr15:81,924,726...81,931,799
JBrowse link
G Snw1 SNW domain containing 1 IEA
ISO
KEGG
RGD
PMID:23742842 mmu:03040, RGD:9686094 NCBI chr12:87,496,680...87,519,069
Ensembl chr12:87,495,845...87,519,044
JBrowse link
G Srrm1 serine/arginine repetitive matrix 1 ISO RGD PMID:17537823 PMID:15145352 RGD:9686091, RGD:9686404 NCBI chr 4:135,047,795...135,080,787
Ensembl chr 4:135,047,795...135,080,632
JBrowse link
G Srrm2 serine/arginine repetitive matrix 2 ISO RGD PMID:17537823 RGD:9686091 NCBI chr17:24,009,501...24,043,715
Ensembl chr17:24,009,506...24,043,715
JBrowse link
G Srrm4 serine/arginine repetitive matrix 4 ISO RGD PMID:23498935 RGD:9686382 NCBI chr 5:116,577,331...116,729,882
Ensembl chr 5:116,577,334...116,729,876
JBrowse link
G Srsf1 serine and arginine-rich splicing factor 1 IEA
ISO
KEGG
RGD
PMID:17537823 PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr11:87,937,325...87,944,583
Ensembl chr11:87,938,199...87,944,581
JBrowse link
G Srsf10 serine and arginine-rich splicing factor 10 IEA
ISO
KEGG
RGD
PMID:17537823 PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr 4:135,582,454...135,597,219
Ensembl chr 4:135,583,058...135,597,219
JBrowse link
G Srsf11 serine and arginine-rich splicing factor 11 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 3:157,716,552...157,742,304
Ensembl chr 3:157,716,110...157,742,276
JBrowse link
G Srsf12 serine and arginine-rich splicing factor 12 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 4:33,208,991...33,233,344
Ensembl chr 4:33,208,991...33,233,340
JBrowse link
G Srsf2 serine and arginine-rich splicing factor 2 IEA
ISO
KEGG
RGD
PMID:17537823 mmu:03040, RGD:9686091 NCBI chr11:116,740,723...116,744,511
Ensembl chr11:116,740,727...116,743,920
JBrowse link
G Srsf3 serine and arginine-rich splicing factor 3 IEA
ISO
KEGG
RGD
PMID:17537823 PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr17:29,251,634...29,262,346
Ensembl chr17:29,251,602...29,262,347
JBrowse link
G Srsf4 serine and arginine-rich splicing factor 4 IEA
ISO
KEGG
RGD
PMID:17537823 PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr 4:131,600,841...131,629,036
Ensembl chr 4:131,600,928...131,629,017
JBrowse link
G Srsf5 serine and arginine-rich splicing factor 5 IEA
ISO
KEGG
RGD
PMID:17537823 PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr12:80,992,308...80,997,277
Ensembl chr12:80,992,278...80,997,281
JBrowse link
G Srsf6 serine and arginine-rich splicing factor 6 IEA
ISO
KEGG
RGD
PMID:17537823 PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr 2:162,773,428...162,779,041
Ensembl chr 2:162,773,448...162,779,041
JBrowse link
G Srsf7 serine and arginine-rich splicing factor 7 IEA
ISO
KEGG
RGD
PMID:17537823 PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr17:80,507,509...80,514,734
Ensembl chr17:80,507,509...80,514,736
JBrowse link
G Srsf9 serine and arginine-rich splicing factor 9 IEA
ISO
KEGG
RGD
PMID:17537823 PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr 5:115,465,236...115,471,139
Ensembl chr 5:115,465,236...115,471,139
JBrowse link
G Syf2 SYF2 homolog, RNA splicing factor (S. cerevisiae) IEA
ISO
KEGG
RGD
PMID:23742842 mmu:03040, RGD:9686094 NCBI chr 4:134,658,291...134,664,848
Ensembl chr 4:134,658,209...134,664,859
JBrowse link
G Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein ISO RGD PMID:17537823 RGD:9686091 NCBI chr 9:88,331,417...88,364,645
Ensembl chr 9:88,329,062...88,364,627
JBrowse link
G Tcerg1 transcription elongation regulator 1 (CA150) IEA KEGG mmu:03040 NCBI chr18:42,644,369...42,708,850
Ensembl chr18:42,644,552...42,708,858
JBrowse link
G Thoc1 THO complex 1 IEA KEGG mmu:03040 NCBI chr18:9,958,176...9,995,486
Ensembl chr18:9,957,906...9,995,489
JBrowse link
G Thoc2 THO complex 2 IEA KEGG mmu:03040 NCBI chr  X:40,883,869...41,000,878
Ensembl chr  X:40,883,868...41,009,551
JBrowse link
G Thoc3 THO complex 3 IEA KEGG mmu:03040 NCBI chr13:54,606,650...54,616,653
Ensembl chr13:54,606,650...54,616,662
JBrowse link
G Tial1 Tia1 cytotoxic granule-associated RNA binding protein-like 1 ISO RGD PMID:23385723 RGD:9686381 NCBI chr 7:128,041,496...128,063,450
Ensembl chr 7:128,041,501...128,063,441
JBrowse link
G Tra2a transformer 2 alpha IEA KEGG mmu:03040 NCBI chr 6:49,220,855...49,241,182
Ensembl chr 6:49,220,858...49,240,967
JBrowse link
G Tra2b transformer 2 beta IEA KEGG mmu:03040 NCBI chr16:22,063,302...22,084,755
Ensembl chr16:22,063,299...22,084,755
JBrowse link
G Txnl4a thioredoxin-like 4A ISO RGD PMID:19239890 RGD:9686089 NCBI chr18:80,250,041...80,269,066
Ensembl chr18:80,249,980...80,255,956
Ensembl chr18:80,249,980...80,255,956
JBrowse link
G U2af1 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1 IEA
ISO
KEGG
RGD
PMID:19239890 mmu:03040, RGD:9686089 NCBI chr17:31,866,055...31,878,122
Ensembl chr17:31,866,055...31,877,866
JBrowse link
G U2af2 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 IEA
ISO
KEGG
RGD
PMID:19239890 mmu:03040, RGD:9686089 NCBI chr 7:5,063,884...5,082,937
Ensembl chr 7:5,065,142...5,082,937
JBrowse link
G Usp39 ubiquitin specific peptidase 39 IEA KEGG mmu:03040 NCBI chr 6:72,295,749...72,322,190
Ensembl chr 6:72,295,661...72,322,167
JBrowse link
G Wbp11 WW domain binding protein 11 IEA KEGG mmu:03040 NCBI chr 6:136,790,652...136,805,214
Ensembl chr 6:136,790,652...136,805,231
JBrowse link
G Xab2 XPA binding protein 2 IEA
ISO
KEGG
RGD
PMID:23742842 mmu:03040, RGD:9686094 NCBI chr 8:3,660,089...3,671,311
Ensembl chr 8:3,658,421...3,671,316
JBrowse link
G Zmat2 zinc finger, matrin type 2 IEA KEGG mmu:03040 NCBI chr18:36,926,976...36,932,713
Ensembl chr18:36,926,929...36,932,719
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 6074
    regulatory pathway 3686
      pathway pertinent to DNA replication and repair, cell cycle, maintenance of genomic integrity, RNA and protein biosynthesis 1656
        transcription pathway 1069
          RNA polymerase transcription pathway 395
            eukaryotic RNA polymerase transcription pathway 395
              RNA polymerase II transcription pathway 326
                RNA polymerase II transcription elongation pathway 36
                RNA polymerase II transcription initiation pathway 58
                RNA polymerase II transcription termination pathway 18
                lncRNA maturation pathway + 159
                mRNA maturation pathway + 185
paths to the root