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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:RNA polymerase II transcription pathway
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Accession:PW:0000127 term browser browse the term
Definition:The series of events governing the synthesis of protein-coding messenger RNA (mRNA) precursors and of transcripts of many classes of non-coding genes.
Synonyms:related_synonym: RNA Polymerase II Transcription;   transcription by RNA polymerase II

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RNA polymerase II transcription pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCNC cyclin C ISO RGD PMID:24088064 RGD:9681732 NCBI chr 6:97,383,290...97,410,068
Ensembl chr 6:101,265,499...101,292,233
JBrowse link
G CDC14A cell division cycle 14A ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737 RGD:9681738 NCBI chr 1:103,002,408...103,178,622
Ensembl chr 1:101,724,213...101,892,619
JBrowse link
G CDC14B cell division cycle 14B ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737 RGD:9681738 NCBI chr 9:67,596,037...67,715,668 JBrowse link
G CDK12 cyclin dependent kinase 12 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737 RGD:9681738 NCBI chr17:17,721,266...17,826,521
Ensembl chr17:17,970,248...18,040,763
JBrowse link
G CDK19 cyclin dependent kinase 19 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 6:108,413,832...108,619,053
Ensembl chr 6:112,483,434...112,686,987
JBrowse link
G CDK7 cyclin dependent kinase 7 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737 RGD:9681738 NCBI chr 5:44,723,268...44,765,711
Ensembl chr 5:46,292,838...46,334,912
JBrowse link
G CDK8 cyclin dependent kinase 8 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 PMID:24088064 RGD:9681732 RGD:9681737 RGD:9681738 NCBI chr13:7,546,922...7,698,079
Ensembl chr13:25,895,705...26,046,120
JBrowse link
G CDK9 cyclin dependent kinase 9 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737 RGD:9681738 NCBI chr 9:98,905,468...98,909,923
Ensembl chr 9:127,580,862...127,584,935
JBrowse link
G CTDP1 CTD phosphatase subunit 1 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737 RGD:9681738 NCBI chr18:73,279,510...73,357,718
Ensembl chr18:76,646,641...76,722,573
JBrowse link
G CTDSP1 CTD small phosphatase 1 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737 RGD:9681738 NCBI chr2B:105,658,394...105,664,571
Ensembl chr2B:224,254,460...224,262,000
JBrowse link
G MED1 mediator complex subunit 1 ISO RGD PMID:24088064 RGD:9681732 NCBI chr17:17,836,350...17,883,610
Ensembl chr17:18,050,474...18,095,118
JBrowse link
G MED10 mediator complex subunit 10 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 5:6,695,045...6,701,703
Ensembl chr 5:6,370,806...6,377,467
JBrowse link
G MED11 mediator complex subunit 11 ISO RGD PMID:24088064 RGD:9681732 NCBI chr17:4,787,139...4,789,339
Ensembl chr17:4,777,157...4,779,403
JBrowse link
G MED12 mediator complex subunit 12 ISO RGD PMID:24088064 RGD:9681732 NCBI chr  X:60,386,820...60,410,730
Ensembl chr  X:70,443,667...70,466,942
JBrowse link
G MED12L mediator complex subunit 12L ISO RGD PMID:24088064 RGD:9681732 NCBI chr 3:148,115,501...148,463,846
Ensembl chr 3:155,686,214...156,031,094
JBrowse link
G MED13 mediator complex subunit 13 ISO RGD PMID:24088064 RGD:9681732 NCBI chr17:56,044,769...56,165,922
Ensembl chr17:61,157,691...61,274,505
JBrowse link
G MED13L mediator complex subunit 13L ISO RGD PMID:24088064 RGD:9681732 NCBI chr12:113,531,181...113,850,854
Ensembl chr12:116,909,244...117,065,649
JBrowse link
G MED14 mediator complex subunit 14 ISO RGD PMID:24088064 RGD:9681732 NCBI chr  X:33,097,206...33,183,322
Ensembl chr  X:40,798,363...40,886,270
JBrowse link
G MED15 mediator complex subunit 15 ISO RGD PMID:24088064 RGD:9681732 Ensembl chr22:19,192,156...19,271,965 JBrowse link
G MED16 mediator complex subunit 16 ISO RGD PMID:24088064 RGD:9681732 NCBI chr19:238,822...260,277
Ensembl chr19:841,367...863,080
JBrowse link
G MED17 mediator complex subunit 17 ISO RGD PMID:24088064 RGD:9681732 NCBI chr11:88,806,209...88,835,138
Ensembl chr11:92,292,947...92,321,913
JBrowse link
G MED18 mediator complex subunit 18 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 1:27,586,459...27,593,762
Ensembl chr 1:28,623,727...28,630,931
JBrowse link
G MED19 mediator complex subunit 19 ISO RGD PMID:24088064 RGD:9681732 NCBI chr11:52,944,554...52,953,150
Ensembl chr11:56,415,721...56,423,475
JBrowse link
G MED20 mediator complex subunit 20 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 6:41,489,079...41,504,572
Ensembl chr 6:42,790,975...42,806,538
JBrowse link
G MED21 mediator complex subunit 21 ISO RGD PMID:24088064 RGD:9681732 NCBI chr12:59,283,334...59,291,008
Ensembl chr12:61,897,603...61,905,348
JBrowse link
G MED22 mediator complex subunit 22 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 9:104,464,103...104,471,294
Ensembl chr 9:133,074,826...133,082,071
JBrowse link
G MED23 mediator complex subunit 23 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 6:129,386,301...129,428,120
Ensembl chr 6:133,481,115...133,535,988
JBrowse link
G MED24 mediator complex subunit 24 ISO RGD PMID:24088064 RGD:9681732 NCBI chr17:17,234,660...17,269,794
Ensembl chr17:17,456,137...17,489,992
JBrowse link
G MED25 mediator complex subunit 25 ISO RGD PMID:24088064 RGD:9681732 NCBI chr19:46,831,190...46,853,367
Ensembl chr19:55,747,722...55,765,942
JBrowse link
G MED26 mediator complex subunit 26 ISO RGD PMID:24088064 RGD:9681732 NCBI chr19:16,065,074...16,118,385
Ensembl chr19:17,043,523...17,051,832
JBrowse link
G MED27 mediator complex subunit 27 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 9:102,982,174...103,199,512
Ensembl chr 9:131,619,441...131,835,951
JBrowse link
G MED28 mediator complex subunit 28 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 4:12,035,441...12,051,718
Ensembl chr 4:17,328,975...17,348,546
JBrowse link
G MED29 mediator complex subunit 29 ISO RGD PMID:24088064 RGD:9681732 NCBI chr19:36,489,459...36,498,838
Ensembl chr19:45,037,228...45,046,717
JBrowse link
G MED30 mediator complex subunit 30 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 8:114,211,278...114,230,838
Ensembl chr 8:116,732,283...116,752,249
JBrowse link
G MED31 mediator complex subunit 31 ISO RGD PMID:24088064 RGD:9681732 NCBI chr17:6,681,675...6,689,115
Ensembl chr17:6,669,582...6,676,882
JBrowse link
G MED4 mediator complex subunit 4 ISO RGD PMID:24088064 RGD:9681732 NCBI chr13:29,227,620...29,247,082
Ensembl chr13:47,929,918...47,948,836
JBrowse link
G MED6 mediator complex subunit 6 ISO RGD PMID:24088064 RGD:9681732 NCBI chr14:51,171,280...51,189,026
Ensembl chr14:70,038,686...70,058,469
JBrowse link
G MED7 mediator complex subunit 7 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 5:152,540,081...152,545,657
Ensembl chr 5:159,162,239...159,162,940
JBrowse link
G MED8 mediator complex subunit 8 ISO RGD PMID:24088064 RGD:9681732 NCBI chr 1:42,685,324...42,691,243
Ensembl chr 1:44,063,479...44,068,835
JBrowse link
G MED9 mediator complex subunit 9 ISO RGD PMID:24088064 RGD:9681732 NCBI chr17:33,802,916...33,819,107
Ensembl chr17:38,749,397...38,765,618
JBrowse link
G POLR2A RNA polymerase II subunit A ISO RGD PMID:22960599 RGD:9588243 NCBI chr17:7,516,940...7,546,989
Ensembl chr17:7,502,807...7,532,521
JBrowse link
G POLR2B RNA polymerase II subunit B ISO RGD PMID:22960599 RGD:9588243 NCBI chr 4:66,888,215...66,940,702
Ensembl chr 4:73,462,000...73,514,985
JBrowse link
G POLR2C RNA polymerase II subunit C ISO RGD PMID:22960599 RGD:9588243 NCBI chr16:37,738,641...37,748,055
Ensembl chr16:56,871,707...56,880,102
JBrowse link
G POLR2D RNA polymerase II subunit D ISO RGD PMID:22960599 RGD:9588243
G POLR2E RNA polymerase II, I and III subunit E ISO RGD PMID:22960599 RGD:9588243 NCBI chr19:32,263...41,992
Ensembl chr19:1,065,421...1,073,379
JBrowse link
G POLR2F RNA polymerase II, I and III subunit F ISO RGD PMID:22960599 RGD:9588243 NCBI chr22:18,868,872...18,988,918
Ensembl chr22:36,796,015...36,814,469
JBrowse link
G POLR2G RNA polymerase II subunit G ISO RGD PMID:22960599 RGD:9588243 NCBI chr11:58,116,833...58,122,031
Ensembl chr11:61,470,866...61,476,073
JBrowse link
G POLR2H RNA polymerase II, I and III subunit H ISO RGD PMID:22960599 RGD:9588243 NCBI chr 3:181,399,136...181,405,680
Ensembl chr 3:189,881,594...189,887,608
JBrowse link
G POLR2I RNA polymerase II subunit I ISO RGD PMID:22960599 RGD:9588243 NCBI chr19:33,032,989...33,034,628
Ensembl chr19:41,780,125...41,781,764
JBrowse link
G POLR2K RNA polymerase II, I and III subunit K ISO RGD PMID:22960599 RGD:9588243 NCBI chr 8:96,791,485...96,794,913
Ensembl chr 8:98,965,837...98,969,221
JBrowse link
G POLR2L RNA polymerase II, I and III subunit L ISO RGD PMID:22960599 RGD:9588243 NCBI chr11:859,015...861,382 JBrowse link
G RPAP2 RNA polymerase II associated protein 2 ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737 RGD:9681738 NCBI chr 1:94,962,964...95,102,307
Ensembl chr 1:93,701,765...93,790,323
JBrowse link
G SSU72 SSU72 homolog, RNA polymerase II CTD phosphatase ISO pol II carboxyl-terminal domain (CTD) RGD PMID:22622228 PMID:23837720 RGD:9681737 RGD:9681738 NCBI chr 1:301,984...335,634
Ensembl chr 1:1,463,184...1,494,797
JBrowse link
3'-end pre-mRNA processing pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLP1 cleavage factor polyribonucleotide kinase subunit 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr11:52,898,181...52,902,656
Ensembl chr11:56,368,433...56,373,129
JBrowse link
G CPSF1 cleavage and polyadenylation specific factor 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 8:141,158,494...141,176,354
Ensembl chr 8:144,148,075...144,166,043
JBrowse link
G CPSF2 cleavage and polyadenylation specific factor 2 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr14:72,757,419...72,801,149
Ensembl chr14:92,099,301...92,140,470
JBrowse link
G CPSF3 cleavage and polyadenylation specific factor 3 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr2A:9,413,517...9,462,758
Ensembl chr2A:9,576,871...9,626,193
JBrowse link
G CPSF4 cleavage and polyadenylation specific factor 4 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 7:91,412,008...91,430,452
Ensembl chr 7:104,914,077...104,932,769
JBrowse link
G CPSF6 cleavage and polyadenylation specific factor 6 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr12:66,750,301...66,785,104
Ensembl chr12:69,535,302...69,550,789
JBrowse link
G CPSF7 cleavage and polyadenylation specific factor 7 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr11:56,702,510...56,729,316
Ensembl chr11:60,065,832...60,092,720
JBrowse link
G CSTF1 cleavage stimulation factor subunit 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr20:52,730,646...52,744,635
Ensembl chr20:54,017,435...54,033,230
JBrowse link
G CSTF2 cleavage stimulation factor subunit 2 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr  X:90,023,054...90,046,229
Ensembl chr  X:100,161,749...100,182,304
JBrowse link
G CSTF2T cleavage stimulation factor subunit 2 tau variant ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr10:48,342,491...48,346,810 JBrowse link
G CSTF3 cleavage stimulation factor subunit 3 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr11:33,061,237...33,137,911
Ensembl chr11:32,945,934...33,021,885
JBrowse link
G DXO decapping exoribonuclease ISO RGD PMID:21957020 RGD:9681741 NCBI chr 6:31,630,523...31,632,363
Ensembl chr 6:32,517,086...32,519,566
JBrowse link
G FIP1L1 factor interacting with PAPOLA and CPSF1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 4:70,495,627...70,579,059
Ensembl chr 4:77,050,858...77,133,003
JBrowse link
G NUDT21 nudix hydrolase 21 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr16:36,715,373...36,737,593
Ensembl chr16:55,851,302...55,869,856
JBrowse link
G PABPN1 poly(A) binding protein nuclear 1 ISO RGD PMID:24243805 RGD:9681742 NCBI chr14:4,126,179...4,144,810
Ensembl chr14:22,220,986...22,239,403
JBrowse link
G PAPOLA poly(A) polymerase alpha ISO RGD PMID:24243805 RGD:9681742 NCBI chr14:77,131,944...77,199,108
Ensembl chr14:96,454,378...96,518,038
JBrowse link
G PAPOLB poly(A) polymerase beta ISO RGD PMID:24243805 RGD:9681742 NCBI chr 7:5,110,442...5,114,734 JBrowse link
G PAPOLG poly(A) polymerase gamma ISO RGD PMID:24243805 RGD:9681742 NCBI chr2A:60,846,593...60,892,462
Ensembl chr2A:61,988,572...62,030,291
JBrowse link
G PCF11 PCF11 cleavage and polyadenylation factor subunit ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr11:78,220,710...78,249,276
Ensembl chr11:81,832,383...81,860,958
JBrowse link
G SYMPK symplekin scaffold protein ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr19:42,824,847...42,872,867
Ensembl chr19:51,361,502...51,410,212
JBrowse link
G WDR33 WD repeat domain 33 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr2B:32,465,959...32,571,024
Ensembl chr2B:128,371,250...128,476,083
JBrowse link
G XRN2 5'-3' exoribonuclease 2 ISO RGD PMID:21957020 RGD:9681741 NCBI chr20:21,260,871...21,347,430
Ensembl chr20:21,222,138...21,308,561
JBrowse link
5'-end pre-mRNA capping pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NCBP1 nuclear cap binding protein subunit 1 ISO RGD PMID:24354960 RGD:9684851 NCBI chr 9:68,724,176...68,764,423
Ensembl chr 9:96,845,422...96,885,624
JBrowse link
G NCBP2 nuclear cap binding protein subunit 2 ISO RGD PMID:24354960 RGD:9684851 NCBI chr 3:194,277,280...194,284,456
Ensembl chr 3:204,214,282...204,221,294
JBrowse link
G RAMAC RNA guanine-7 methyltransferase activating subunit ISO RGD PMID:24354960 RGD:9684851 NCBI chr15:62,613,027...62,617,863
Ensembl chr15:80,876,487...80,881,337
JBrowse link
G RNGTT RNA guanylyltransferase and 5'-phosphatase ISO RGD PMID:24354960 RGD:9684851 NCBI chr 6:86,490,725...86,841,421
Ensembl chr 6:89,761,712...90,118,184
JBrowse link
G RNMT RNA guanine-7 methyltransferase ISO RGD PMID:24354960 RGD:9684851 NCBI chr18:560,744...598,216
Ensembl chr18:2,729,921...2,767,279
JBrowse link
RNA polymerase II transcription elongation pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AFF1 ALF transcription elongation factor 1 ISO RGD PMID:22895430 RGD:9681740 NCBI chr 4:79,197,196...79,443,485
Ensembl chr 4:89,969,675...90,166,160
JBrowse link
G AFF4 ALF transcription elongation factor 4 ISO RGD PMID:22895430 RGD:9681740 NCBI chr 5:128,292,700...128,374,511
Ensembl chr 5:134,457,398...134,532,625
JBrowse link
G CCNK cyclin K ISO RGD PMID:24050178 RGD:9681735 NCBI chr14:80,105,372...80,136,511
Ensembl chr14:99,438,814...99,480,842
JBrowse link
G CCNT1 cyclin T1 ISO RGD PMID:24050178 RGD:9681735 NCBI chr12:40,028,334...40,057,393
Ensembl chr12:40,906,907...40,935,392
JBrowse link
G CCNT2 cyclin T2 ISO RGD PMID:24050178 RGD:9681735 NCBI chr2B:24,903,389...24,943,122
Ensembl chr2B:138,994,868...139,035,301
JBrowse link
G CDC73 cell division cycle 73 ISO RGD PMID:20060942 RGD:9588246 NCBI chr 1:168,581,730...168,710,915
Ensembl chr 1:172,875,365...173,004,934
JBrowse link
G CDK9 cyclin dependent kinase 9 ISO RGD PMID:24050178 RGD:9681735 NCBI chr 9:98,905,468...98,909,923
Ensembl chr 9:127,580,862...127,584,935
JBrowse link
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component ISO RGD PMID:20060942 RGD:9588246 NCBI chr11:10,884,353...10,913,246
Ensembl chr11:10,610,892...10,639,808
JBrowse link
G EAF1 ELL associated factor 1 ISO RGD PMID:22895430 RGD:9681740 NCBI chr 3:15,353,459...15,368,579
Ensembl chr 3:15,689,745...15,705,300
JBrowse link
G EAF2 ELL associated factor 2 ISO RGD PMID:22895430 RGD:9681740 NCBI chr 3:118,936,685...118,996,051
Ensembl chr 3:125,844,338...125,895,416
JBrowse link
G ELL elongation factor for RNA polymerase II ISO RGD PMID:22895430 RGD:9681740 NCBI chr19:17,923,035...17,999,842
Ensembl chr19:18,894,054...18,969,923
JBrowse link
G ELL2 elongation factor for RNA polymerase II 2 ISO RGD PMID:22895430 RGD:9681740 NCBI chr 5:19,387,443...19,464,150
Ensembl chr 5:19,533,442...19,610,079
JBrowse link
G ELL3 elongation factor for RNA polymerase II 3 ISO RGD PMID:22895430 RGD:9681740 NCBI chr15:22,732,742...22,737,522
Ensembl chr15:40,821,759...40,827,070
JBrowse link
G GTF2F1 general transcription factor IIF subunit 1 ISO RGD PMID:24050178 RGD:9681735 NCBI chr19:5,401,090...5,414,142
Ensembl chr19:6,323,780...6,336,215
JBrowse link
G GTF2F2 general transcription factor IIF subunit 2 ISO RGD PMID:24050178 RGD:9681735 NCBI chr13:26,286,305...26,452,302
Ensembl chr 3:197,619,461...197,784,798
JBrowse link
G LEO1 LEO1 homolog, Paf1/RNA polymerase II complex component ISO RGD PMID:20060942 RGD:9588246 NCBI chr15:30,879,431...30,913,361
Ensembl chr15:49,208,132...49,241,055
JBrowse link
G MLLT1 MLLT1 super elongation complex subunit ISO RGD PMID:22895430 RGD:9681740 NCBI chr19:5,231,481...5,301,160
Ensembl chr19:6,156,365...6,216,779
JBrowse link
G MLLT3 MLLT3 super elongation complex subunit ISO RGD PMID:22895430 RGD:9681740 NCBI chr 9:20,140,160...20,417,327
Ensembl chr 9:20,800,393...21,073,046
JBrowse link
G NCBP1 nuclear cap binding protein subunit 1 ISO RGD PMID:24354960 RGD:9684851 NCBI chr 9:68,724,176...68,764,423
Ensembl chr 9:96,845,422...96,885,624
JBrowse link
G NCBP2 nuclear cap binding protein subunit 2 ISO RGD PMID:24354960 RGD:9684851 NCBI chr 3:194,277,280...194,284,456
Ensembl chr 3:204,214,282...204,221,294
JBrowse link
G NELFA negative elongation factor complex member A ISO RGD PMID:24050178 RGD:9681735 NCBI chr 4:2,119,699...2,147,618
Ensembl chr 4:2,027,939...2,054,669
JBrowse link
G NELFB negative elongation factor complex member B ISO RGD PMID:24050178 RGD:9681735 NCBI chr 9:108,314,535...108,333,050
Ensembl chr 9:137,278,964...137,301,751
JBrowse link
G NELFCD negative elongation factor complex member C/D ISO RGD PMID:24050178 RGD:9681735 NCBI chr20:55,332,309...55,346,167
Ensembl chr20:56,693,685...56,706,458
JBrowse link
G NELFE negative elongation factor complex member E ISO RGD PMID:24050178 RGD:9681735 NCBI chr 6:31,612,924...31,619,732
Ensembl chr 6:32,499,540...32,506,382
JBrowse link
G PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component ISO RGD PMID:20060942 RGD:9588246 NCBI chr19:36,484,099...36,489,364
Ensembl chr19:45,031,819...45,037,169
JBrowse link
G RNGTT RNA guanylyltransferase and 5'-phosphatase ISO RGD PMID:24354960 RGD:9684851 NCBI chr 6:86,490,725...86,841,421
Ensembl chr 6:89,761,712...90,118,184
JBrowse link
G RTF1 RTF1 homolog, Paf1/RNA polymerase II complex component ISO RGD PMID:20060942 RGD:9588246 NCBI chr15:20,355,927...20,424,153
Ensembl chr15:38,599,163...38,662,100
JBrowse link
G SKIC8 SKI8 subunit of superkiller complex ISO RGD PMID:20060942 RGD:9588246 NCBI chr15:57,204,199...57,229,052
Ensembl chr15:76,175,131...76,194,368
JBrowse link
G SSRP1 structure specific recognition protein 1 ISO RGD PMID:24050178 RGD:9681735 NCBI chr11:52,567,420...52,577,324
Ensembl chr 3:160,057,285...160,068,177
JBrowse link
G SUPT16H SPT16 homolog, facilitates chromatin remodeling subunit ISO RGD PMID:24050178 RGD:9681735 NCBI chr14:2,169,169...2,201,911
Ensembl chr14:20,247,325...20,280,074
JBrowse link
G SUPT4H1 SPT4 homolog, DSIF elongation factor subunit ISO RGD PMID:24050178 RGD:9681735 NCBI chr17:52,420,503...52,427,514 JBrowse link
G SUPT5H SPT5 homolog, DSIF elongation factor subunit ISO RGD PMID:24050178 RGD:9681735 NCBI chr19:36,543,998...36,575,161
Ensembl chr19:45,092,075...45,122,335
JBrowse link
G TCEA1 transcription elongation factor A1 ISO RGD PMID:24050178 RGD:9681735 NCBI chr 8:50,393,553...50,449,698
Ensembl chr 8:47,770,661...47,825,804
JBrowse link
G TCEA2 transcription elongation factor A2 ISO RGD PMID:24050178 RGD:9681735 Ensembl chr20:61,976,869...61,986,592 JBrowse link
G TCEA3 transcription elongation factor A3 ISO RGD PMID:24050178 RGD:9681735 NCBI chr 1:22,573,050...22,617,426
Ensembl chr 1:23,560,258...23,602,792
JBrowse link
RNA polymerase II transcription initiation pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATXN7 ataxin 7 ISO RGD PMID:22426530 RGD:9681728 NCBI chr 3:63,766,480...63,906,913
Ensembl chr 3:65,194,703...65,280,879
JBrowse link
G ATXN7L3 ataxin 7 like 3 ISO RGD PMID:22426530 RGD:9681728 NCBI chr17:13,197,939...13,206,017
Ensembl chr17:13,362,312...13,369,667
JBrowse link
G CCNH cyclin H ISO RGD PMID:21592869 RGD:9681726 NCBI chr 5:27,958,859...27,995,815
Ensembl chr 5:28,094,064...28,116,149
JBrowse link
G CDK7 cyclin dependent kinase 7 ISO RGD PMID:21592869 RGD:9681726 NCBI chr 5:44,723,268...44,765,711
Ensembl chr 5:46,292,838...46,334,912
JBrowse link
G DR1 down-regulator of transcription 1 ISO RGD PMID:22426530 RGD:9681728 NCBI chr 1:96,014,758...96,031,402
Ensembl chr 1:94,746,109...94,762,736
JBrowse link
G ENY2 ENY2 transcription and export complex 2 subunit ISO RGD PMID:22426530 RGD:9681728 NCBI chr 8:105,985,043...105,996,686
Ensembl chr 8:108,129,883...108,141,478
JBrowse link
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit ISO RGD PMID:21592869 RGD:9681726 NCBI chr19:42,298,927...42,319,816
Ensembl chr19:50,897,004...50,915,819
JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit ISO RGD PMID:21592869 RGD:9681726 NCBI chr2B:32,983,492...33,020,492
Ensembl chr2B:127,922,483...127,959,372
JBrowse link
G ERCC5 ERCC excision repair 5, endonuclease ISO RGD PMID:21592869 RGD:9681726 NCBI chr13:84,005,950...84,036,710
Ensembl chr13:103,096,344...103,174,182
JBrowse link
G GTF2A1 general transcription factor IIA subunit 1 ISO RGD PMID:24120742 RGD:9681721 NCBI chr14:61,751,492...61,797,083
Ensembl chr14:80,951,886...80,996,777
JBrowse link
G GTF2A2 general transcription factor IIA subunit 2 ISO RGD PMID:24120742 RGD:9681721 NCBI chr15:38,608,360...38,627,156
Ensembl chr15:56,913,452...56,932,052
JBrowse link
G GTF2B general transcription factor IIB ISO RGD PMID:24120742 RGD:9681721 NCBI chr 1:91,568,296...91,607,467
Ensembl chr 1:90,319,637...90,359,134
JBrowse link
G GTF2E1 general transcription factor IIE subunit 1 ISO RGD PMID:24120742 RGD:9681721 NCBI chr 3:117,850,234...117,890,719
Ensembl chr 3:124,760,926...124,801,230
JBrowse link
G GTF2E2 general transcription factor IIE subunit 2 ISO RGD PMID:24120742 RGD:9681721 NCBI chr 8:29,881,879...29,961,554
Ensembl chr 8:27,071,634...27,151,147
JBrowse link
G GTF2F1 general transcription factor IIF subunit 1 ISO RGD PMID:24120742 RGD:9681721 NCBI chr19:5,401,090...5,414,142
Ensembl chr19:6,323,780...6,336,215
JBrowse link
G GTF2F2 general transcription factor IIF subunit 2 ISO RGD PMID:24120742 RGD:9681721 NCBI chr13:26,286,305...26,452,302
Ensembl chr 3:197,619,461...197,784,798
JBrowse link
G GTF2H1 general transcription factor IIH subunit 1 ISO RGD PMID:21592869 RGD:9681726 NCBI chr11:18,357,594...18,402,268
Ensembl chr11:18,042,824...18,086,898
JBrowse link
G GTF2H3 general transcription factor IIH subunit 3 ISO RGD PMID:21592869 RGD:9681726 NCBI chr12:121,218,813...121,246,807
Ensembl chr12:125,445,381...125,473,763
JBrowse link
G GTF2H4 general transcription factor IIH subunit 4 ISO RGD PMID:21592869 RGD:9681726 NCBI chr 6:30,653,398...30,659,316
Ensembl chr 6:31,521,501...31,527,456
JBrowse link
G GTF2H5 general transcription factor IIH subunit 5 ISO RGD PMID:21592869 RGD:9681726 Ensembl chr 6:158,126,665...158,153,663 JBrowse link
G HCFC2 host cell factor C2 ISO RGD PMID:22426530 RGD:9681728 NCBI chr12:101,640,561...101,682,283
Ensembl chr12:105,036,716...105,074,532
JBrowse link
G KAT14 lysine acetyltransferase 14 ISO RGD PMID:22426530 RGD:9681728 NCBI chr20:18,106,400...18,152,231
Ensembl chr20:18,082,402...18,128,470
JBrowse link
G KAT2A lysine acetyltransferase 2A ISO RGD PMID:22426530 RGD:9681728 NCBI chr17:15,194,414...15,202,818
Ensembl chr17:15,416,075...15,424,197
JBrowse link
G KAT2B lysine acetyltransferase 2B ISO RGD PMID:22426530 RGD:9681728 NCBI chr 3:19,956,067...20,070,637
Ensembl chr 3:20,286,865...20,400,770
JBrowse link
G MBIP MAP3K12 binding inhibitory protein 1 ISO RGD PMID:22426530 RGD:9681728 NCBI chr14:17,052,270...17,074,609
Ensembl chr14:35,231,398...35,253,746
JBrowse link
G MNAT1 MNAT1 component of CDK activating kinase ISO RGD PMID:21592869 RGD:9681726 NCBI chr14:41,342,530...41,576,690
Ensembl chr14:59,603,209...59,835,408
JBrowse link
G POLE3 DNA polymerase epsilon 3, accessory subunit ISO RGD PMID:22426530 RGD:9681728 NCBI chr 9:84,509,237...84,512,651
Ensembl chr 9:112,879,047...112,882,951
JBrowse link
G SGF29 SAGA complex associated factor 29 ISO RGD PMID:22426530 RGD:9681728 Ensembl chr16:29,030,587...29,068,795 JBrowse link
G SUPT20H SPT20 homolog, SAGA complex component ISO RGD PMID:22426530 RGD:9681728 NCBI chr13:18,217,142...18,268,937
Ensembl chr13:36,647,544...36,687,513
JBrowse link
G SUPT3H SPT3 homolog, SAGA and STAGA complex component ISO RGD PMID:22426530 RGD:9681728 NCBI chr 6:44,406,978...44,960,039 JBrowse link
G SUPT7L SPT7 like, STAGA complex subunit gamma ISO RGD PMID:22426530 RGD:9681728 NCBI chr2A:27,648,724...27,661,760
Ensembl chr2A:27,734,763...27,747,802
JBrowse link
G TADA1 transcriptional adaptor 1 ISO RGD PMID:22426530 RGD:9681728 NCBI chr 1:142,273,856...142,296,775
Ensembl chr 1:146,061,155...146,083,348
JBrowse link
G TADA2A transcriptional adaptor 2A ISO RGD PMID:22426530 RGD:9681728 NCBI chr17:19,595,055...19,670,090
Ensembl chr17:19,897,659...19,967,926
JBrowse link
G TADA2B transcriptional adaptor 2B ISO RGD PMID:22426530 RGD:9681728 Ensembl chr 4:7,110,732...7,125,100 JBrowse link
G TADA3 transcriptional adaptor 3 ISO RGD PMID:22426530 RGD:9681728 NCBI chr 3:9,731,462...9,744,513
Ensembl chr 3:9,969,550...9,982,389
JBrowse link
G TAF1 TATA-box binding protein associated factor 1 ISO RGD PMID:23146842 RGD:9681723 NCBI chr  X:60,630,137...60,729,904
Ensembl chr  X:70,684,217...70,782,323
JBrowse link
G TAF10 TATA-box binding protein associated factor 10 ISO RGD PMID:22426530 PMID:23146842 RGD:9681723 RGD:9681728 NCBI chr11:6,742,862...6,744,260 JBrowse link
G TAF11 TATA-box binding protein associated factor 11 ISO RGD PMID:23146842 RGD:9681723 NCBI chr 6:34,439,369...34,449,501
Ensembl chr 6:35,536,614...35,546,805
JBrowse link
G TAF12 TATA-box binding protein associated factor 12 ISO RGD PMID:22426530 PMID:23146842 RGD:9681723 RGD:9681728 NCBI chr 1:27,874,675...27,914,672 JBrowse link
G TAF13 TATA-box binding protein associated factor 13 ISO RGD PMID:23146842 RGD:9681723 NCBI chr 1:111,441,202...111,452,773
Ensembl chr 1:110,604,654...110,617,808
JBrowse link
G TAF15 TATA-box binding protein associated factor 15 ISO RGD PMID:23146842 RGD:9681723 NCBI chr17:20,948,186...20,985,925 JBrowse link
G TAF2 TATA-box binding protein associated factor 2 ISO RGD PMID:23146842 RGD:9681723 NCBI chr 8:116,421,520...116,523,138
Ensembl chr 8:119,170,327...119,271,405
JBrowse link
G TAF3 TATA-box binding protein associated factor 3 ISO RGD PMID:23146842 RGD:9681723 NCBI chr10:7,851,294...8,047,100 JBrowse link
G TAF4 TATA-box binding protein associated factor 4 ISO RGD PMID:23146842 RGD:9681723 NCBI chr20:58,341,086...58,431,623 JBrowse link
G TAF5 TATA-box binding protein associated factor 5 ISO RGD PMID:23146842 RGD:9681723 NCBI chr10:99,965,537...99,986,955
Ensembl chr10:103,426,334...103,447,046
JBrowse link
G TAF5L TATA-box binding protein associated factor 5 like ISO RGD PMID:22426530 RGD:9681728 NCBI chr 1:205,137,767...205,170,704
Ensembl chr 1:210,168,379...210,200,903
JBrowse link
G TAF6 TATA-box binding protein associated factor 6 ISO RGD PMID:23146842 RGD:9681723 NCBI chr 7:92,142,646...92,154,951
Ensembl chr 7:105,575,861...105,588,142
JBrowse link
G TAF6L TATA-box binding protein associated factor 6 like ISO RGD PMID:22426530 RGD:9681728 NCBI chr11:58,126,480...58,142,752
Ensembl chr11:61,485,259...61,495,877
JBrowse link
G TAF7 TATA-box binding protein associated factor 7 ISO RGD PMID:23146842 RGD:9681723 NCBI chr 5:136,680,554...136,682,862 JBrowse link
G TAF8 TATA-box binding protein associated factor 8 ISO RGD PMID:23146842 RGD:9681723 NCBI chr 6:41,631,483...41,672,988
Ensembl chr 6:42,933,107...42,978,271
JBrowse link
G TAF9 TATA-box binding protein associated factor 9 ISO RGD PMID:22426530 PMID:23146842 RGD:9681723 RGD:9681728 NCBI chr 5:44,630,503...44,635,760 JBrowse link
G TBP TATA-box binding protein ISO RGD PMID:23146842 PMID:24120742 RGD:9681721 RGD:9681723 NCBI chr 6:168,714,214...168,732,744
Ensembl chr 6:173,800,240...173,826,909
JBrowse link
G TRRAP transformation/transcription domain associated protein ISO RGD PMID:22426530 RGD:9681728 NCBI chr 7:90,845,518...90,981,700
Ensembl chr 7:104,351,320...104,486,722
JBrowse link
G USP22 ubiquitin specific peptidase 22 ISO RGD PMID:22426530 RGD:9681728 NCBI chr17:30,606,845...30,650,281
Ensembl chr17:35,468,177...35,511,672
JBrowse link
G WDR5 WD repeat domain 5 ISO RGD PMID:22426530 RGD:9681728 NCBI chr 9:105,241,415...105,265,925
Ensembl chr 9:133,848,185...133,872,889
JBrowse link
G YEATS2 YEATS domain containing 2 ISO RGD PMID:22426530 RGD:9681728 NCBI chr 3:180,736,213...180,847,545
Ensembl chr 3:188,903,615...189,016,942
JBrowse link
G ZZZ3 zinc finger ZZ-type containing 3 ISO RGD PMID:22426530 RGD:9681728 NCBI chr 1:76,783,387...76,902,711
Ensembl chr 1:78,866,284...78,986,872
JBrowse link
RNA polymerase II transcription termination pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLP1 cleavage factor polyribonucleotide kinase subunit 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr11:52,898,181...52,902,656
Ensembl chr11:56,368,433...56,373,129
JBrowse link
G CPSF1 cleavage and polyadenylation specific factor 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 8:141,158,494...141,176,354
Ensembl chr 8:144,148,075...144,166,043
JBrowse link
G CPSF2 cleavage and polyadenylation specific factor 2 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr14:72,757,419...72,801,149
Ensembl chr14:92,099,301...92,140,470
JBrowse link
G CPSF3 cleavage and polyadenylation specific factor 3 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr2A:9,413,517...9,462,758
Ensembl chr2A:9,576,871...9,626,193
JBrowse link
G CPSF4 cleavage and polyadenylation specific factor 4 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 7:91,412,008...91,430,452
Ensembl chr 7:104,914,077...104,932,769
JBrowse link
G CPSF6 cleavage and polyadenylation specific factor 6 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr12:66,750,301...66,785,104
Ensembl chr12:69,535,302...69,550,789
JBrowse link
G CPSF7 cleavage and polyadenylation specific factor 7 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr11:56,702,510...56,729,316
Ensembl chr11:60,065,832...60,092,720
JBrowse link
G CSTF1 cleavage stimulation factor subunit 1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr20:52,730,646...52,744,635
Ensembl chr20:54,017,435...54,033,230
JBrowse link
G CSTF2 cleavage stimulation factor subunit 2 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr  X:90,023,054...90,046,229
Ensembl chr  X:100,161,749...100,182,304
JBrowse link
G CSTF2T cleavage stimulation factor subunit 2 tau variant ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr10:48,342,491...48,346,810 JBrowse link
G CSTF3 cleavage stimulation factor subunit 3 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr11:33,061,237...33,137,911
Ensembl chr11:32,945,934...33,021,885
JBrowse link
G DXO decapping exoribonuclease ISO RGD PMID:21957020 RGD:9681741 NCBI chr 6:31,630,523...31,632,363
Ensembl chr 6:32,517,086...32,519,566
JBrowse link
G FIP1L1 factor interacting with PAPOLA and CPSF1 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr 4:70,495,627...70,579,059
Ensembl chr 4:77,050,858...77,133,003
JBrowse link
G NUDT21 nudix hydrolase 21 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr16:36,715,373...36,737,593
Ensembl chr16:55,851,302...55,869,856
JBrowse link
G PCF11 PCF11 cleavage and polyadenylation factor subunit ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr11:78,220,710...78,249,276
Ensembl chr11:81,832,383...81,860,958
JBrowse link
G SYMPK symplekin scaffold protein ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr19:42,824,847...42,872,867
Ensembl chr19:51,361,502...51,410,212
JBrowse link
G WDR33 WD repeat domain 33 ISO RGD PMID:21957020 PMID:24243805 RGD:9681741 RGD:9681742 NCBI chr2B:32,465,959...32,571,024
Ensembl chr2B:128,371,250...128,476,083
JBrowse link
G XRN2 5'-3' exoribonuclease 2 ISO RGD PMID:21957020 RGD:9681741 NCBI chr20:21,260,871...21,347,430
Ensembl chr20:21,222,138...21,308,561
JBrowse link
spliceosome pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AAR2 AAR2 splicing factor ISO RGD PMID:23592432 RGD:9686090 NCBI chr20:32,565,770...32,586,299
Ensembl chr20:33,685,529...33,705,953
JBrowse link
G AQR aquarius intron-binding spliceosomal factor ISO RGD PMID:23742842 RGD:9686094 NCBI chr15:13,774,234...13,891,046
Ensembl chr15:32,036,653...32,149,157
JBrowse link
G BCAS2 BCAS2 pre-mRNA processing factor ISO RGD PMID:23742842 RGD:9686094 NCBI chr 1:87,972,721...87,986,819
Ensembl chr 1:123,024,910...123,039,068
JBrowse link
G BUD31 BUD31 homolog ISO RGD PMID:23742842 RGD:9686094 NCBI chr 7:91,382,353...91,393,112
Ensembl chr 7:104,884,088...104,894,865
JBrowse link
G CCDC12 coiled-coil domain containing 12 ISO RGD PMID:23742842 RGD:9686094 NCBI chr 3:46,822,128...46,882,217
Ensembl chr 3:47,923,673...47,978,660
JBrowse link
G CDC5L cell division cycle 5 like ISO RGD PMID:23742842 RGD:9686094 NCBI chr 6:43,983,840...44,043,029
Ensembl chr 6:45,265,845...45,326,383
JBrowse link
G CRNKL1 crooked neck pre-mRNA splicing factor 1 ISO RGD PMID:23742842 RGD:9686094 NCBI chr20:19,992,092...20,010,809
Ensembl chr20:19,959,356...19,979,094
JBrowse link
G CTNNBL1 catenin beta like 1 ISO RGD PMID:23742842 RGD:9686094 NCBI chr20:34,015,883...34,192,958
Ensembl chr20:35,129,836...35,306,836
JBrowse link
G CWC15 CWC15 spliceosome associated protein homolog ISO RGD PMID:23742842 RGD:9686094 NCBI chr11:89,977,104...89,987,495
Ensembl chr11:93,499,406...93,509,827
JBrowse link
G DDX23 DEAD-box helicase 23 ISO RGD PMID:19239890 PMID:23454554 RGD:9686089 RGD:9686093 NCBI chr12:39,896,354...39,917,195
Ensembl chr12:40,774,975...40,796,466
JBrowse link
G DDX39B DExD-box helicase 39B ISO RGD PMID:23454554 RGD:9686093 NCBI chr 6:31,191,333...31,203,246
Ensembl chr 6:32,081,210...32,092,569
JBrowse link
G DDX42 DEAD-box helicase 42 ISO RGD PMID:17537823 RGD:9686091 NCBI chr17:57,854,197...57,898,820
Ensembl chr17:62,998,505...63,045,904
JBrowse link
G DDX46 DEAD-box helicase 46 ISO RGD PMID:23454554 RGD:9686093 NCBI chr 5:130,185,793...130,232,208
Ensembl chr 5:136,302,356...136,375,992
JBrowse link
G DHX15 DEAH-box helicase 15 ISO RGD PMID:23454554 RGD:9686093 NCBI chr 4:18,931,119...18,988,048
Ensembl chr 4:24,217,123...24,273,585
JBrowse link
G DHX16 DEAH-box helicase 16 ISO RGD PMID:23454554 RGD:9686093 NCBI chr 6:30,397,774...30,417,758
Ensembl chr 6:31,267,669...31,287,435
JBrowse link
G DHX38 DEAH-box helicase 38 ISO RGD PMID:23454554 RGD:9686093 NCBI chr16:52,872,164...52,891,165
Ensembl chr16:71,955,021...71,974,199
JBrowse link
G DHX8 DEAH-box helicase 8 ISO RGD PMID:23454554 RGD:9686093 NCBI chr17:13,870,392...13,913,290
Ensembl chr17:14,117,231...14,159,773
JBrowse link
G EFTUD2 elongation factor Tu GTP binding domain containing 2 ISO RGD PMID:23454554 PMID:23592432 RGD:9686090 RGD:9686093 NCBI chr17:12,423,198...12,472,462
Ensembl chr17:12,595,715...12,644,147
JBrowse link
G HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 5:133,132,030...133,140,771
Ensembl chr 5:139,277,004...139,277,939
JBrowse link
G HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr12:34,456,900...34,463,317
Ensembl chr12:35,184,943...35,188,443
JBrowse link
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 7:26,835,881...26,846,578
Ensembl chr 7:26,439,443...26,449,985
JBrowse link
G HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr2B:64,491,827...64,503,095
Ensembl chr2B:182,196,645...182,207,937
JBrowse link
G HNRNPAB heterogeneous nuclear ribonucleoprotein A/B ISO RGD PMID:17537823 RGD:9686091 NCBI chr 5:173,364,301...173,370,974 JBrowse link
G HNRNPC heterogeneous nuclear ribonucleoprotein C ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr14:2,022,280...2,083,215 JBrowse link
G HNRNPD heterogeneous nuclear ribonucleoprotein D ISO RGD PMID:17537823 RGD:9686091 NCBI chr 4:41,825,518...41,846,166
Ensembl chr 4:47,676,599...47,696,894
JBrowse link
G HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 5:174,764,771...174,775,201
Ensembl chr 5:182,044,549...182,053,635
JBrowse link
G HNRNPH3 heterogeneous nuclear ribonucleoprotein H3 ISO RGD PMID:17537823 RGD:9686091 NCBI chr10:64,816,143...64,827,354
Ensembl chr10:67,126,067...67,137,267
JBrowse link
G HNRNPK heterogeneous nuclear ribonucleoprotein K ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 9:40,898,593...40,911,159
Ensembl chr 9:83,324,238...83,336,756
JBrowse link
G HNRNPL heterogeneous nuclear ribonucleoprotein L ISO RGD PMID:17537823 RGD:9686091 NCBI chr19:35,943,720...35,959,795 JBrowse link
G HNRNPM heterogeneous nuclear ribonucleoprotein M ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr19:7,731,828...7,776,101
Ensembl chr19:8,579,211...8,624,029
JBrowse link
G HNRNPR heterogeneous nuclear ribonucleoprotein R ISO RGD PMID:17537823 RGD:9686091 NCBI chr 1:22,501,816...22,536,050
Ensembl chr 1:23,491,310...23,521,977
JBrowse link
G HNRNPU heterogeneous nuclear ribonucleoprotein U ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 1:220,450,218...220,461,412
Ensembl chr 1:225,817,899...225,842,031
JBrowse link
G HSPA8 heat shock protein family A (Hsp70) member 8 ISO RGD PMID:23742842 RGD:9686094 NCBI chr11:117,890,545...117,895,262
Ensembl chr11:121,809,800...121,815,773
JBrowse link
G ISY1 ISY1 splicing factor homolog ISO RGD PMID:23742842 RGD:9686094 NCBI chr 3:126,187,354...126,219,355
Ensembl chr 3:133,545,726...133,575,974
JBrowse link
G LOC100988043 eukaryotic initiation factor 4A-III ISO RGD PMID:15145352 RGD:9686404 NCBI chr17:74,221,793...74,233,738 JBrowse link
G LSM2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 6:31,458,514...31,468,126
Ensembl chr 6:32,344,669...32,354,631
JBrowse link
G LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 3:14,097,035...14,165,942
Ensembl chr 3:14,437,497...14,456,726
JBrowse link
G LSM4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr19:17,785,580...17,801,866
Ensembl chr19:18,757,390...18,773,812
JBrowse link
G LSM5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 7:33,094,545...33,104,489 JBrowse link
G LSM6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 4:138,514,194...138,528,575
Ensembl chr 4:150,171,648...150,185,947
JBrowse link
G LSM7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr19:1,330,469...1,337,610
Ensembl chr19:2,302,280...2,313,255
JBrowse link
G LSM8 LSM8 homolog, U6 small nuclear RNA associated ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 7:110,150,584...110,160,864 JBrowse link
G MAGOHB mago homolog B, exon junction complex subunit ISO RGD PMID:15145352 RGD:9686404 NCBI chr12:10,632,174...10,639,758
Ensembl chr12:10,898,716...10,905,958
JBrowse link
G MBNL1 muscleblind like splicing regulator 1 ISO RGD PMID:23498935 RGD:9686382 NCBI chr 3:149,288,323...149,487,635
Ensembl chr 3:156,888,763...157,054,207
JBrowse link
G PLRG1 pleiotropic regulator 1 ISO RGD PMID:23742842 RGD:9686094 NCBI chr 4:146,900,494...146,917,016
Ensembl chr 4:158,719,568...158,735,103
JBrowse link
G PNN pinin, desmosome associated protein ISO RGD PMID:15145352 RGD:9686404 NCBI chr14:19,945,185...19,952,922
Ensembl chr14:38,300,782...38,308,512
JBrowse link
G PPIE peptidylprolyl isomerase E ISO RGD PMID:18544344 PMID:23742842 RGD:9686094 RGD:9686376 NCBI chr 1:39,029,412...39,054,500
Ensembl chr 1:40,355,598...40,380,472
JBrowse link
G PPIG peptidylprolyl isomerase G ISO RGD PMID:18544344 RGD:9686376 NCBI chr2B:56,854,219...56,911,325
Ensembl chr2B:174,322,828...174,379,281
JBrowse link
G PPIH peptidylprolyl isomerase H ISO RGD PMID:18544344 RGD:9686376 NCBI chr 1:41,958,260...41,981,598
Ensembl chr 1:43,336,039...43,353,898
JBrowse link
G PPIL1 peptidylprolyl isomerase like 1 ISO RGD PMID:18544344 PMID:23742842 RGD:9686094 RGD:9686376 NCBI chr 6:36,417,086...36,437,259
Ensembl chr 6:37,612,724...37,632,942
JBrowse link
G PPIL2 peptidylprolyl isomerase like 2 ISO RGD PMID:18544344 RGD:9686376 NCBI chr22:3,788,603...3,821,090
Ensembl chr22:20,272,383...20,304,130
JBrowse link
G PPIL3 peptidylprolyl isomerase like 3 ISO RGD PMID:18544344 RGD:9686376 NCBI chr2B:88,126,756...88,145,203
Ensembl chr2B:206,285,108...206,303,764
JBrowse link
G PRPF18 pre-mRNA processing factor 18 ISO RGD PMID:24452469 RGD:9686092 NCBI chr10:13,584,517...13,628,389
Ensembl chr10:13,915,943...13,959,830
JBrowse link
G PRPF19 pre-mRNA processing factor 19 ISO RGD PMID:23742842 RGD:9686094 NCBI chr11:56,153,965...56,169,821
Ensembl chr11:59,595,120...59,607,828
JBrowse link
G PRPF3 pre-mRNA processing factor 3 ISO RGD PMID:19239890 RGD:9686089 NCBI chr 1:125,666,604...125,698,591
Ensembl chr 1:129,320,605...129,348,214
JBrowse link
G PRPF31 pre-mRNA processing factor 31 ISO RGD PMID:19239890 RGD:9686089 NCBI chr19:51,048,133...51,064,394
Ensembl chr19:59,891,070...59,907,159
JBrowse link
G PRPF4 pre-mRNA splicing tri-snRNP complex factor PRPF4 ISO RGD PMID:19239890 RGD:9686089 NCBI chr 9:84,373,457...84,390,622
Ensembl chr 9:112,745,455...112,763,725
JBrowse link
G PRPF6 pre-mRNA processing factor 6 ISO RGD PMID:19239890 RGD:9686089 Ensembl chr20:61,899,076...61,948,088 JBrowse link
G PRPF8 pre-mRNA processing factor 8 ISO RGD PMID:23592432 RGD:9686090 NCBI chr17:1,635,991...1,669,703
Ensembl chr17:1,532,579...1,565,254
JBrowse link
G PTBP1 polypyrimidine tract binding protein 1 ISO RGD PMID:23385723 RGD:9686381 NCBI chr19:319,953...334,945 JBrowse link
G PTBP2 polypyrimidine tract binding protein 2 ISO RGD PMID:23498935 RGD:9686382 NCBI chr 1:99,382,924...99,474,053
Ensembl chr 1:98,105,913...98,196,723
JBrowse link
G QKI QKI, KH domain containing RNA binding ISO RGD PMID:23385723 RGD:9686381 NCBI chr 6:161,361,413...161,523,414 JBrowse link
G RBM22 RNA binding motif protein 22 ISO RGD PMID:23742842 RGD:9686094 NCBI chr 5:146,115,077...146,125,383
Ensembl chr 5:152,118,945...152,129,261
JBrowse link
G RBM8A RNA binding motif protein 8A ISO RGD PMID:15145352 RGD:9686404 NCBI chr 1:121,830,424...121,836,378
Ensembl chr 1:113,834,110...113,839,429
JBrowse link
G RBMX RNA binding motif protein X-linked ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr  X:125,997,989...126,009,525
Ensembl chr  X:136,264,406...136,275,360
JBrowse link
G RNPS1 RNA binding protein with serine rich domain 1 ISO RGD PMID:15145352 RGD:9686404 NCBI chr16:1,110,249...1,124,975 JBrowse link
G SART3 spliceosome associated factor 3, U4/U6 recycling protein ISO RGD PMID:23592432 RGD:9686090 NCBI chr12:106,093,738...106,132,710
Ensembl chr12:109,489,932...109,529,091
JBrowse link
G SF1 splicing factor 1 ISO RGD PMID:19239890 RGD:9686089 NCBI chr11:60,120,126...60,134,279
Ensembl chr11:63,461,318...63,473,355
JBrowse link
G SF3A1 splicing factor 3a subunit 1 ISO RGD PMID:17537823 RGD:9686091 NCBI chr22:11,369,772...11,392,998
Ensembl chr22:29,172,536...29,194,735
JBrowse link
G SF3A2 splicing factor 3a subunit 2 ISO RGD PMID:17537823 RGD:9686091 NCBI chr19:1,247,812...1,259,984 JBrowse link
G SF3A3 splicing factor 3a subunit 3 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 1:37,230,553...37,264,167
Ensembl chr 1:38,575,122...38,612,009
JBrowse link
G SF3B1 splicing factor 3b subunit 1 ISO RGD PMID:17537823 RGD:9686091 NCBI chr2B:84,633,272...84,678,602
Ensembl chr2B:202,530,200...202,573,346
JBrowse link
G SF3B2 splicing factor 3b subunit 2 ISO RGD PMID:17537823 RGD:9686091 NCBI chr11:61,416,764...61,433,334
Ensembl chr11:64,743,629...64,759,772
JBrowse link
G SF3B3 splicing factor 3b subunit 3 ISO RGD PMID:17537823 RGD:9686091 NCBI chr16:54,442,510...54,490,950
Ensembl chr16:70,361,068...70,410,042
JBrowse link
G SF3B4 splicing factor 3b subunit 4 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 1:125,268,113...125,273,405
Ensembl chr 1:128,924,317...128,929,610
JBrowse link
G SF3B5 splicing factor 3b subunit 5 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 6:141,873,848...141,874,584
Ensembl chr 6:146,594,201...146,594,461
JBrowse link
G SF3B6 splicing factor 3b subunit 6 ISO RGD PMID:17537823 RGD:9686091 NCBI chr2A:24,065,640...24,074,512
Ensembl chr2A:24,162,976...24,172,040
JBrowse link
G SLU7 SLU7 homolog, splicing factor ISO RGD PMID:24452469 RGD:9686092 NCBI chr 5:155,792,494...155,810,474
Ensembl chr 5:162,486,743...162,504,316
JBrowse link
G SNRNP200 small nuclear ribonucleoprotein U5 subunit 200 ISO RGD PMID:23454554 PMID:23592432 RGD:9686090 RGD:9686093 NCBI chr2A:103,010,083...103,040,958
Ensembl chr2A:97,197,137...97,228,511
JBrowse link
G SNRNP70 small nuclear ribonucleoprotein U1 subunit 70 ISO RGD PMID:23592432 RGD:9686090 NCBI chr19:46,094,679...46,118,022
Ensembl chr19:55,021,402...55,046,281
JBrowse link
G SNRPA small nuclear ribonucleoprotein polypeptide A ISO RGD PMID:23592432 RGD:9686090 NCBI chr19:37,795,139...37,809,265
Ensembl chr19:46,302,198...46,316,593
JBrowse link
G SNRPA1 small nuclear ribonucleoprotein polypeptide A' ISO RGD PMID:17537823 RGD:9686091 NCBI chr15:80,006,167...80,020,319
Ensembl chr15:99,289,668...99,303,839
JBrowse link
G SNRPB small nuclear ribonucleoprotein polypeptides B and B1 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr20:2,571,393...2,580,642
Ensembl chr20:2,335,499...2,344,763
JBrowse link
G SNRPB2 small nuclear ribonucleoprotein polypeptide B2 ISO RGD PMID:17537823 RGD:9686091 NCBI chr20:16,690,562...16,701,964
Ensembl chr20:16,670,826...16,682,418
JBrowse link
G SNRPC small nuclear ribonucleoprotein polypeptide C ISO RGD PMID:23592432 RGD:9686090 NCBI chr 6:34,324,127...34,340,526
Ensembl chr 6:35,421,467...35,437,622
JBrowse link
G SNRPD1 small nuclear ribonucleoprotein D1 polypeptide ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr18:14,851,041...14,869,042
Ensembl chr18:18,488,929...18,506,284
JBrowse link
G SNRPD2 small nuclear ribonucleoprotein D2 polypeptide ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr19:42,692,963...42,697,512
Ensembl chr19:51,230,822...51,235,661
JBrowse link
G SNRPD3 small nuclear ribonucleoprotein D3 polypeptide ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr22:5,361,886...5,378,465
Ensembl chr22:22,227,328...22,246,676
JBrowse link
G SNRPE small nuclear ribonucleoprotein polypeptide E ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 1:179,466,263...179,474,779
Ensembl chr 1:183,755,392...183,764,937
JBrowse link
G SNRPF small nuclear ribonucleoprotein polypeptide F ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr12:93,452,446...93,459,691
Ensembl chr12:96,841,638...96,886,039
JBrowse link
G SNRPG small nuclear ribonucleoprotein polypeptide G ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr2A:70,335,547...70,347,970
Ensembl chr2A:71,451,225...71,463,884
JBrowse link
G SNU13 small nuclear ribonucleoprotein 13 ISO RGD PMID:19239890 RGD:9686089 NCBI chr22:22,567,285...22,582,257
Ensembl chr22:40,653,338...40,669,706
JBrowse link
G SNW1 SNW domain containing 1 ISO RGD PMID:23742842 RGD:9686094 NCBI chr14:58,271,830...58,315,773
Ensembl chr14:77,472,387...77,517,315
JBrowse link
G SRRM1 serine and arginine repetitive matrix 1 ISO RGD PMID:15145352 PMID:17537823 RGD:9686091 RGD:9686404 NCBI chr 1:23,844,303...23,874,333
Ensembl chr 1:24,821,565...24,850,997
JBrowse link
G SRRM2 serine/arginine repetitive matrix 2 ISO RGD PMID:17537823 RGD:9686091 NCBI chr16:1,612,386...1,631,177
Ensembl chr16:2,865,810...2,884,902
JBrowse link
G SRRM4 serine/arginine repetitive matrix 4 ISO RGD PMID:23498935 RGD:9686382 NCBI chr12:116,561,412...116,743,153
Ensembl chr12:120,060,023...120,117,181
JBrowse link
G SRSF1 serine and arginine rich splicing factor 1 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr17:52,083,676...52,087,454
Ensembl chr17:56,937,295...56,944,425
JBrowse link
G SRSF10 serine and arginine rich splicing factor 10 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 1:23,170,078...23,184,030
Ensembl chr 1:24,149,428...24,165,057
JBrowse link
G SRSF11 serine and arginine rich splicing factor 11 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 1:69,441,043...69,488,427
Ensembl chr 1:71,442,600...71,471,361
JBrowse link
G SRSF12 serine and arginine rich splicing factor 12 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 6:86,968,446...86,990,507
Ensembl chr 6:90,244,345...90,258,152
JBrowse link
G SRSF2 serine and arginine rich splicing factor 2 ISO RGD PMID:17537823 RGD:9686091 NCBI chr17:70,809,931...70,813,191
Ensembl chr17:76,375,957...76,379,759
JBrowse link
G SRSF3 serine and arginine rich splicing factor 3 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 6:36,157,321...36,165,896
Ensembl chr 6:37,352,484...37,362,195
JBrowse link
G SRSF4 serine and arginine rich splicing factor 4 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr 1:28,418,297...28,452,595
Ensembl chr 1:29,444,269...29,478,035
JBrowse link
G SRSF5 serine and arginine rich splicing factor 5 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr14:50,320,820...50,365,650
Ensembl chr14:69,230,730...69,236,596
JBrowse link
G SRSF6 serine and arginine rich splicing factor 6 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr20:39,795,659...39,801,864
Ensembl chr20:40,888,560...40,891,853
JBrowse link
G SRSF7 serine and arginine rich splicing factor 7 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr2A:38,780,879...38,787,470
Ensembl chr2A:39,536,731...39,545,562
JBrowse link
G SRSF9 serine and arginine rich splicing factor 9 ISO RGD PMID:17537823 PMID:19239890 RGD:9686089 RGD:9686091 NCBI chr12:118,043,325...118,052,107
Ensembl chr12:121,417,557...121,425,708
JBrowse link
G SYF2 SYF2 pre-mRNA splicing factor ISO RGD PMID:23742842 RGD:9686094 NCBI chr 1:24,422,931...24,432,870
Ensembl chr 1:25,397,241...25,406,806
JBrowse link
G SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein ISO RGD PMID:17537823 RGD:9686091 NCBI chr 6:83,491,803...83,527,256 JBrowse link
G TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 ISO RGD PMID:23385723 RGD:9686381 NCBI chr10:116,142,127...116,165,631
Ensembl chr10:119,561,786...119,585,157
JBrowse link
G TXNL4A thioredoxin like 4A ISO RGD PMID:19239890 RGD:9686089 NCBI chr18:73,618,302...73,679,603
Ensembl chr18:76,937,460...76,952,428
JBrowse link
G U2AF1 U2 small nuclear RNA auxiliary factor 1 ISO RGD PMID:19239890 RGD:9686089 NCBI chr21:29,399,601...29,414,156
Ensembl chr21:42,707,738...42,719,086
JBrowse link
G U2AF2 U2 small nuclear RNA auxiliary factor 2 ISO RGD PMID:19239890 RGD:9686089 NCBI chr19:52,701,314...52,721,612
Ensembl chr19:61,387,109...61,405,943
JBrowse link
G XAB2 XPA binding protein 2 ISO RGD PMID:23742842 RGD:9686094 NCBI chr19:6,909,281...6,919,332
Ensembl chr19:7,764,264...7,774,305
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 4064
    regulatory pathway 2507
      pathway pertinent to DNA replication and repair, cell cycle, maintenance of genomic integrity, RNA and protein biosynthesis 1338
        transcription pathway 927
          RNA polymerase transcription pathway 348
            eukaryotic RNA polymerase transcription pathway 348
              RNA polymerase II transcription pathway 279
                RNA polymerase II transcription elongation pathway 35
                RNA polymerase II transcription initiation pathway 57
                RNA polymerase II transcription termination pathway 18
                lncRNA maturation pathway + 114
                mRNA maturation pathway + 141
paths to the root