PATHWAY ONTOLOGY - ANNOTATIONS
The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (https://rgd.mcw.edu/rgdweb/contact/contactus.html ).
Term: Hedgehog signaling pathway
Accession: PW:0000122
browse the term
Definition: The Hedgehog signaling pathway (Hh) plays important roles in vertebrate embryogenesis, particularly in the differentiation of the neural tube, in vasculogenesis and in angiogenesis. Post-embryonically it is believed to play a homeostatic role in the maintenance of stem cells. Alteration of the pathway has been implicated in a number of human cancers.
Synonyms: related_synonym: Signaling by Hedgehog; smoothened signaling pathway
View Interactive Diagram
G
Akt1
AKT serine/threonine kinase 1
ISO
PID
PID:200168 PID:200172
NCBI chr 6:137,534,810...137,555,131
Ensembl chr 6:137,535,390...137,552,610
G
Arrb2
arrestin, beta 2
ISO
PID
PID:200168 PID:200172
NCBI chr10:55,645,539...55,653,485
Ensembl chr10:55,645,357...55,653,487
G
Bmp2
bone morphogenetic protein 2
IEA
KEGG
rno:04340
NCBI chr 3:141,264,648...141,275,416
Ensembl chr 3:141,264,646...141,274,760
G
Bmp4
bone morphogenetic protein 4
IEA
KEGG
rno:04340
NCBI chr15:22,098,191...22,113,145
Ensembl chr15:22,098,470...22,105,172
G
Bmp5
bone morphogenetic protein 5
IEA
KEGG
rno:04340
NCBI chr 8:85,397,629...85,520,374
Ensembl chr 8:85,396,925...85,520,189
G
Bmp6
bone morphogenetic protein 6
IEA
KEGG
rno:04340
NCBI chr17:26,523,704...26,785,558
Ensembl chr17:26,523,704...26,675,261
G
Bmp7
bone morphogenetic protein 7
IEA
KEGG
rno:04340
NCBI chr 3:182,059,318...182,135,273
Ensembl chr 3:182,052,337...182,135,137
G
Bmp8a
bone morphogenetic protein 8a
IEA
KEGG
rno:04340
NCBI chr 5:140,874,942...140,902,881
Ensembl chr 5:140,874,503...140,902,881
G
Boc
BOC cell adhesion associated, oncogene regulated
ISO
RGD
PMID:20844013
RGD:5510025
NCBI chr11:69,628,703...69,704,009
Ensembl chr11:69,628,660...69,704,004
G
Btrc
beta-transducin repeat containing E3 ubiquitin protein ligase
ISO IEA
KEGG RGD
PMID:20635334
rno:04340, RGD:5510026
NCBI chr 1:254,159,085...254,324,819
Ensembl chr 1:254,159,124...254,328,357
G
Cdon
cell adhesion associated, oncogene regulated
ISO
PID RGD
PMID:20844013
PID:200168, RGD:5510025
NCBI chr 8:42,032,921...42,119,451
Ensembl chr 8:42,033,042...42,119,345
G
Crebbp
CREB binding protein
ISO
PID
PID:200172
NCBI chr10:11,842,307...11,968,266
Ensembl chr10:11,822,620...11,968,266
G
Csnk1a1
casein kinase 1, alpha 1
ISO IEA
PID KEGG
PID:200172 rno:04340
NCBI chr18:57,285,156...57,320,540
Ensembl chr18:57,287,412...57,320,538
G
Csnk1d
casein kinase 1, delta
ISO IEA
PID KEGG
PID:200172 rno:04340
NCBI chr10:106,713,497...106,754,953
Ensembl chr10:106,694,279...106,754,953
G
Csnk1e
casein kinase 1, epsilon
ISO IEA
PID KEGG
PID:200172 rno:04340
NCBI chr 7:112,863,726...112,887,338
Ensembl chr 7:112,863,731...112,884,101
G
Csnk1g1
casein kinase 1, gamma 1
ISO IEA
PID KEGG
PID:200172 rno:04340
NCBI chr 8:75,334,751...75,472,339
Ensembl chr 8:75,334,895...75,467,515
G
Csnk1g2
casein kinase 1, gamma 2
ISO IEA
PID KEGG
PID:200172 rno:04340
NCBI chr 7:9,727,430...9,746,341
Ensembl chr 7:9,727,431...9,745,741
G
Csnk1g3
casein kinase 1, gamma 3
ISO IEA
PID KEGG
PID:200172 rno:04340
NCBI chr18:49,497,839...49,584,828
Ensembl chr18:49,497,839...49,584,828
G
Dhh
desert hedgehog signaling molecule
IMP IEA ISO
KEGG PID RGD
PMID:11118005 PMID:20844013 PMID:20716670
PID:200168 rno:04340, RGD:634737 , RGD:5510025 , RGD:5510013
NCBI chr 7:131,929,857...131,935,352
Ensembl chr 7:131,929,857...131,935,352
G
Disp1
dispatched RND transporter family member 1
ISO
RGD
PMID:20635334
RGD:5510026
NCBI chr13:97,252,574...97,398,329
Ensembl chr13:97,252,574...97,398,460
G
Fbxw11
F-box and WD repeat domain containing 11
ISO IEA
PID KEGG
PID:200172 rno:04340
NCBI chr10:17,737,181...17,834,834
Ensembl chr10:17,720,444...17,834,834
G
Foxa2
forkhead box A2
ISO
PID
PID:200172
NCBI chr 3:155,923,305...155,927,508
Ensembl chr 3:155,923,307...155,928,757
G
Gas1
growth arrest-specific 1
ISO
PID RGD
PMID:20844013
PID:200168 RGD:5510025
NCBI chr17:4,487,716...4,490,701
Ensembl chr17:4,484,283...4,497,657
G
Gli1
GLI family zinc finger 1
ISO IEA
KEGG PID RGD
PMID:20716670 PMID:20635334
PID:200172 rno:04340, RGD:5510013 , RGD:5510026
NCBI chr 7:65,042,237...65,054,888
Ensembl chr 7:65,042,237...65,054,540
G
Gli2
GLI family zinc finger 2
ISO IEA
KEGG PID RGD
PMID:20716670 PMID:20635334
PID:200168 PID:200172 rno:04340, RGD:5510013 , RGD:5510026
NCBI chr13:32,499,678...32,716,418
Ensembl chr13:32,499,678...32,716,418
G
Gli3
GLI family zinc finger 3
TAS IEA ISO
KEGG PID RGD
PMID:15328011 PMID:20635334 PMID:20716670
PID:200172 rno:04340, RGD:1303367 , RGD:5510026 , RGD:5510013
NCBI chr17:54,134,064...54,405,198
Ensembl chr17:54,134,064...54,405,198
G
Gnai1
G protein subunit alpha i1
ISO
PID
PID:200172
NCBI chr 4:17,706,061...17,790,176
Ensembl chr 4:17,706,025...17,789,198
G
Gnai2
G protein subunit alpha i2
ISO
PID
PID:200172
NCBI chr 8:117,167,045...117,187,652
Ensembl chr 8:117,167,045...117,187,622
G
Gnai3
G protein subunit alpha i3
ISO
PID
PID:200172
NCBI chr 2:198,430,920...198,468,874
G
Gnao1
G protein subunit alpha o1
ISO
PID
PID:200172
NCBI chr19:11,040,788...11,198,437
Ensembl chr19:11,040,788...11,198,437
G
Gnaz
G protein subunit alpha z
ISO
PID
PID:200172
NCBI chr20:13,642,853...13,693,616
Ensembl chr20:13,644,020...13,669,287
G
Gnb1
G protein subunit beta 1
ISO
PID
PID:200172
NCBI chr 5:171,357,778...171,424,489
Ensembl chr 5:171,357,797...171,424,488
G
Gng2
G protein subunit gamma 2
ISO
PID
PID:200172
NCBI chr15:4,365,222...4,466,060
Ensembl chr15:4,365,135...4,466,059
G
Gpc1
glypican 1
ISO
RGD
PMID:20231458
RGD:5510027
NCBI chr 9:100,843,645...100,871,458
Ensembl chr 9:100,843,645...100,879,933
G
Gpc2
glypican 2
IMP
RGD
PMID:20231458
RGD:5510027
NCBI chr12:22,391,489...22,397,822
Ensembl chr12:22,391,489...22,397,822
G
Gpc3
glypican 3
ISO
RGD
PMID:20231458
RGD:5510027
NCBI chr X:136,789,770...137,157,598
Ensembl chr X:136,789,770...137,157,639
G
Gpc4
glypican 4
ISO
RGD
PMID:20231458
RGD:5510027
NCBI chr X:136,565,536...136,676,142
Ensembl chr X:136,565,591...136,676,057
G
Gpc5
glypican 5
ISO
RGD
PMID:20231458
RGD:5510027
NCBI chr15:98,614,499...100,051,285
Ensembl chr15:98,646,340...100,051,514
G
Gpc6
glypican 6
ISO
RGD
PMID:20231458
RGD:5510027
NCBI chr15:100,437,415...101,435,038
Ensembl chr15:100,437,943...101,435,027
G
Grk2
G protein-coupled receptor kinase 2
ISO
PID
PID:200168
NCBI chr 1:211,010,259...211,031,013
Ensembl chr 1:211,009,978...211,031,015
G
Gsk3b
glycogen synthase kinase 3 beta
ISO IEA
KEGG PID RGD
PMID:20635334
PID:200172 rno:04340, RGD:5510026
NCBI chr11:76,004,502...76,154,665
Ensembl chr11:76,009,507...76,153,249
G
Hdac1
histone deacetylase 1
ISO
PID
PID:200172
NCBI chr 5:147,138,328...147,165,387
Ensembl chr 5:147,138,156...147,165,387
G
Hdac2
histone deacetylase 2
ISO
PID
PID:200172
NCBI chr20:42,101,815...42,126,486
Ensembl chr20:42,102,861...42,126,311
G
Hhat
hedgehog acyltransferase
ISO
PID
PID:200168
NCBI chr13:106,558,635...106,814,723
Ensembl chr13:106,541,866...106,811,563
G
Hhip
Hedgehog-interacting protein
ISO IEA
KEGG PID RGD
PMID:20844013
PID:200168 rno:04340, RGD:5510025
NCBI chr19:44,768,038...44,856,878
Ensembl chr19:44,767,536...44,862,795
G
Hspg2
heparan sulfate proteoglycan 2
IDA
RGD
PMID:21720682
RGD:5510033
NCBI chr 5:154,960,818...155,061,971
Ensembl chr 5:154,960,846...155,061,971
G
Ift172
intraflagellar transport 172
ISO
PID
PID:200172
NCBI chr 6:30,801,841...30,841,239
Ensembl chr 6:30,801,918...30,840,830
G
Ift88
intraflagellar transport 88
ISO
PID
PID:200172
NCBI chr15:35,685,678...35,786,875
Ensembl chr15:35,688,927...35,781,634
G
Ihh
Indian hedgehog signaling molecule
ISO IEA
KEGG PID RGD
PMID:20716670 PMID:12082161 PMID:20844013
PID:200168 rno:04340, RGD:5510013 , RGD:1299259 , RGD:5510025
NCBI chr 9:83,952,986...83,959,203
Ensembl chr 9:83,952,986...83,959,203
G
Kif3a
kinesin family member 3a
ISO
PID
PID:200172
NCBI chr10:38,226,388...38,263,062
Ensembl chr10:38,226,741...38,260,516
G
Lgals3
galectin 3
ISO
PID
PID:200172
NCBI chr15:23,099,795...23,111,731
Ensembl chr15:23,086,841...23,111,737
G
Lrp2
LDL receptor related protein 2
ISO IEA
KEGG PID RGD
PMID:20635334
PID:200168 rno:04340, RGD:5510026
NCBI chr 3:74,597,148...74,754,535
Ensembl chr 3:74,597,148...74,754,535
G
Lrpap1
LDL receptor related protein associated protein 1
ISO
PID
PID:200168
NCBI chr14:79,876,002...79,888,011
Ensembl chr14:79,875,708...79,890,034
G
Map2k1
mitogen activated protein kinase kinase 1
ISO
PID
PID:200172
NCBI chr 8:73,578,747...73,650,184
Ensembl chr 8:73,578,752...73,650,184
G
Mtss1
MTSS I-BAR domain containing 1
ISO
PID
PID:200172
NCBI chr 7:92,378,228...92,517,444
Ensembl chr 7:92,378,238...92,517,303
G
Pias1
protein inhibitor of activated STAT, 1
ISO
PID
PID:200172
NCBI chr 8:72,233,566...72,347,085
Ensembl chr 8:72,233,566...72,334,315
G
Pik3ca
phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha
ISO
PID
PID:200168
NCBI chr 2:117,103,643...117,177,411
Ensembl chr 2:117,143,468...117,177,411
G
Pik3r1
phosphoinositide-3-kinase regulatory subunit 1
ISO
PID
PID:200168
NCBI chr 2:34,612,946...34,697,660
Ensembl chr 2:34,612,946...34,626,347
G
Prkaca
protein kinase cAMP-activated catalytic subunit alpha
ISO IEA
PID KEGG
PID:200172 rno:04340
NCBI chr19:41,059,843...41,083,189
Ensembl chr19:41,059,843...41,086,494
G
Prkacb
protein kinase cAMP-activated catalytic subunit beta
IEA
KEGG
rno:04340
NCBI chr 2:238,297,140...238,389,317
Ensembl chr 2:238,300,127...238,386,315
G
Prkcd
protein kinase C, delta
ISO
PID
PID:200172
NCBI chr16:5,775,681...5,806,122
Ensembl chr16:5,775,681...5,805,839
G
Prkx
protein kinase cAMP-dependent X-linked catalytic subunit
IEA
KEGG
rno:04340
NCBI chr X:45,701,747...45,745,210
Ensembl chr X:45,701,747...45,745,066
G
Ptch1
patched 1
ISO IEA
KEGG PID RGD
PMID:20716670 PMID:20635334
PID:200168 PID:200172 rno:04340, RGD:5510013 , RGD:5510026
NCBI chr17:1,548,449...1,613,461
Ensembl chr17:1,548,449...1,613,461
G
Ptch2
patched 2
ISO
PID RGD
PMID:20635334 PMID:20716670
PID:200168 RGD:5510013 RGD:5510026
NCBI chr 5:135,808,856...135,829,087
Ensembl chr 5:135,808,895...135,828,986
G
Pthlh
parathyroid hormone-like hormone
ISO
PID
PID:200168
NCBI chr 4:181,919,400...181,930,454
Ensembl chr 4:181,919,400...181,930,454
G
Rab23
RAB23, member RAS oncogene family
ISO IEA
PID KEGG
PID:200172 rno:04340
NCBI chr 9:43,440,047...43,463,327
Ensembl chr 9:43,440,273...43,463,325
G
Rbbp4
RB binding protein 4, chromatin remodeling factor
ISO
PID
PID:200172
NCBI chr 5:146,940,207...146,959,501
Ensembl chr 5:146,922,611...146,959,501
G
Rbbp7
RB binding protein 7, chromatin remodeling factor
ISO
PID
PID:200172
NCBI chr X:35,544,873...35,563,030
Ensembl chr X:35,544,873...35,563,030
G
Sap18
Sin3A associated protein 18
ISO
PID
PID:200172
NCBI chr15:36,058,784...36,063,089
Ensembl chr10:87,156,914...87,158,257 Ensembl chr15:87,156,914...87,158,257
G
Sap30
Sin3A associated protein 30
ISO
PID
PID:200172
NCBI chr16:37,758,494...37,763,825
Ensembl chr16:37,757,656...37,763,823
G
Shh
sonic hedgehog signaling molecule
ISO IEA
KEGG PID RGD
PMID:20716670 PMID:12417650 PMID:20844013
PID:200168 PID:200172 rno:04340, RGD:5510013 , RGD:628387 , RGD:5510025
NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:7,687,846...7,697,901
G
Sin3a
SIN3 transcription regulator family member A
ISO
PID
PID:200172
NCBI chr 8:66,377,471...66,432,150
Ensembl chr 8:66,381,657...66,434,542
G
Sin3b
SIN3 transcription regulator family member B
ISO
PID
PID:200172
NCBI chr16:17,157,352...17,194,051
Ensembl chr16:17,157,352...17,270,664
G
Smo
smoothened, frizzled class receptor
ISO IEA
KEGG PID RGD
PMID:20716670 PMID:9422511 PMID:20635334
PID:200168 PID:200172 rno:04340, RGD:5510013 , RGD:704355 , RGD:5510026
NCBI chr 4:59,311,084...59,341,280
Ensembl chr 4:59,311,041...59,341,281
G
Spop
speckle type BTB/POZ protein
ISO
PID
PID:200172
NCBI chr10:80,854,890...80,935,781
Ensembl chr10:80,854,973...80,935,146
G
Sspo
SCO-spondin
ISO
PID
PID:200172
NCBI chr 4:78,725,829...78,781,330
Ensembl chr 4:78,727,275...78,781,315
G
Stil
STIL, centriolar assembly protein
ISO
PID
PID:200168
NCBI chr 5:133,757,598...133,810,493
Ensembl chr 5:133,760,417...133,810,494
G
Stk36
serine/threonine kinase 36
ISO IEA
PID KEGG
PID:200172 rno:04340
NCBI chr 9:83,625,905...83,652,785
Ensembl chr 9:83,626,030...83,653,525
G
Sufu
SUFU negative regulator of hedgehog signaling
ISO IEA
KEGG PID RGD
PMID:20716670
PID:200172 rno:04340, RGD:5510013
NCBI chr 1:255,199,108...255,296,983
Ensembl chr 1:255,199,164...255,296,981
G
Tgfb2
transforming growth factor, beta 2
ISO
PID
PID:200168
NCBI chr13:100,691,540...100,793,227
Ensembl chr13:100,692,953...100,792,856
G
Wnt1
Wnt family member 1
IEA
KEGG
rno:04340
NCBI chr 7:131,817,558...131,821,605
Ensembl chr 7:131,817,558...131,821,605
G
Wnt10a
Wnt family member 10A
IEA
KEGG
rno:04340
NCBI chr 9:83,798,594...83,811,060
Ensembl chr 9:83,798,594...83,811,067
G
Wnt10b
Wnt family member 10B
IEA
KEGG
rno:04340
NCBI chr 7:131,801,046...131,806,850
Ensembl chr 7:131,801,046...131,806,850
G
Wnt11
Wnt family member 11
IEA
KEGG
rno:04340
NCBI chr 1:162,545,660...162,565,456
Ensembl chr 1:162,545,680...162,564,660
G
Wnt16
Wnt family member 16
IEA
KEGG
rno:04340
NCBI chr 4:51,786,728...51,797,137
Ensembl chr 4:51,786,660...51,816,568
G
Wnt2
Wnt family member 2
IEA
KEGG
rno:04340
NCBI chr 4:47,294,300...47,340,284
Ensembl chr 4:47,294,300...47,421,976
G
Wnt2b
Wnt family member 2B
IEA
KEGG
rno:04340
NCBI chr 2:195,142,573...195,156,945
Ensembl chr 2:195,135,176...195,157,144
G
Wnt3
Wnt family member 3
IEA
KEGG
rno:04340
NCBI chr10:89,180,224...89,224,195
Ensembl chr10:89,216,801...89,224,195
G
Wnt3a
Wnt family member 3A
IEA
KEGG
rno:04340
NCBI chr10:44,533,734...44,577,919
Ensembl chr10:44,533,734...44,577,919
G
Wnt4
Wnt family member 4
IEA
KEGG
rno:04340
NCBI chr 5:154,797,245...154,818,565
Ensembl chr 5:154,797,311...154,817,128
G
Wnt5a
Wnt family member 5A
IEA
KEGG
rno:04340
NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,703,665...3,724,860
G
Wnt5b
Wnt family member 5B
IEA
KEGG
rno:04340
NCBI chr 4:154,281,852...154,406,081
Ensembl chr 4:154,281,852...154,405,681
G
Wnt6
Wnt family member 6
IEA
KEGG
rno:04340
NCBI chr 9:83,778,552...83,792,186
Ensembl chr 9:83,778,552...83,792,186
G
Wnt7a
Wnt family member 7A
IEA
KEGG
rno:04340
NCBI chr 4:125,420,276...125,466,149
Ensembl chr 4:125,420,276...125,466,149
G
Wnt7b
Wnt family member 7B
IEA
KEGG
rno:04340
NCBI chr 7:118,514,684...118,559,316
Ensembl chr 7:118,514,684...118,559,316
G
Wnt8a
Wnt family member 8A
IEA
KEGG
rno:04340
NCBI chr18:26,411,833...26,417,426
Ensembl chr18:26,411,833...26,417,426
G
Wnt8b
Wnt family member 8B
IEA
KEGG
rno:04340
NCBI chr 1:253,303,369...253,325,224
Ensembl chr 1:253,295,557...253,325,224
G
Wnt9a
Wnt family member 9A
IEA
KEGG
rno:04340
NCBI chr10:44,593,691...44,620,682
Ensembl chr10:44,593,691...44,620,682
G
Wnt9b
Wnt family member 9B
IEA
KEGG
rno:04340
NCBI chr10:89,135,362...89,157,065
Ensembl chr10:89,135,363...89,157,065
G
Xpo1
exportin 1
ISO
PID
PID:200172
NCBI chr14:101,434,450...101,476,705
Ensembl chr14:101,434,517...101,476,714
G
Zic2
Zic family member 2
IEA
KEGG
rno:04340
NCBI chr15:105,982,711...105,988,167
Ensembl chr15:105,983,342...105,988,167
G
Boc
BOC cell adhesion associated, oncogene regulated
ISO
RGD
PMID:18772397
RGD:5490966
NCBI chr11:69,628,703...69,704,009
Ensembl chr11:69,628,660...69,704,004
G
Dhh
desert hedgehog signaling molecule
IMP
RGD
PMID:11118005
RGD:634737
NCBI chr 7:131,929,857...131,935,352
Ensembl chr 7:131,929,857...131,935,352
G
Gli1
GLI family zinc finger 1
ISO
RGD
PMID:21186299 PMID:18772397
RGD:5491005 , RGD:5490966
NCBI chr 7:65,042,237...65,054,888
Ensembl chr 7:65,042,237...65,054,540
G
Gli3
GLI family zinc finger 3
ISS ISO
RGD
PMID:15328011 PMID:18772397
RGD:1303367 , RGD:5490966
NCBI chr17:54,134,064...54,405,198
Ensembl chr17:54,134,064...54,405,198
G
Lrp2
LDL receptor related protein 2
ISO
RGD
PMID:18772397
RGD:5490966
NCBI chr 3:74,597,148...74,754,535
Ensembl chr 3:74,597,148...74,754,535
G
Shh
sonic hedgehog signaling molecule
ISO
RGD
PMID:19506583
RGD:5490965
NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:7,687,846...7,697,901
G
Smo
smoothened, frizzled class receptor
ISO
RGD
PMID:9422511
RGD:704355
NCBI chr 4:59,311,084...59,341,280
Ensembl chr 4:59,311,041...59,341,281
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all