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Pathways
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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:DNA repair pathway
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Accession:PW:0000099 term browser browse the term
Definition:The pathways involved in the repair of damaged DNA. The damage can involve mismatched or damaged bases, distortion of the helix or breaks in the DNA double strand. Repair of DNA lesions along with the upstream lesion detection and signaling its presence are collectively known as the DNA damage response.
Synonyms:related_synonym: DNA Repair


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altered DNA modification pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MBD4 methyl-CpG binding domain 4, DNA glycosylase IMP in silico assessment of loss of DNA-protein interactions and observed enhancement of DNA repair capacity (DRC) in the context of nucleotide excision repair (NER) pathway for SNP RGD PMID:24004570 RGD:9588971 NCBI chr 3:129,430,947...129,439,948
Ensembl chr 3:129,430,947...129,440,179 		JBrowse link
altered mismatch repair pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MLH1 mutL homolog 1 TAS RGD PMID:11900875 PMID:19078924 RGD:2306714, RGD:4143515 NCBI chr 3:36,993,466...37,050,846
Ensembl chr 3:36,993,226...37,050,896 		JBrowse link
G MSH2 mutS homolog 2 TAS RGD PMID:11900875 RGD:2306714 NCBI chr 2:47,403,067...47,709,830
Ensembl chr 2:47,403,067...47,663,146 		JBrowse link
G MSH6 mutS homolog 6 TAS RGD PMID:11900875 PMID:19078924 RGD:2306714, RGD:4143515 NCBI chr 2:47,783,145...47,810,101
Ensembl chr 2:47,695,530...47,810,063 		JBrowse link
G PMS1 PMS1 homolog 1, mismatch repair system component TAS RGD PMID:11900875 RGD:2306714 NCBI chr 2:189,784,450...189,877,629
Ensembl chr 2:189,784,085...189,877,629 		JBrowse link
G PMS2 PMS1 homolog 2, mismatch repair system component TAS RGD PMID:11900875 RGD:2306714 NCBI chr 7:5,970,925...6,009,106
Ensembl chr 7:5,970,925...6,009,130 		JBrowse link
altered nucleotide excision repair pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDB1 damage specific DNA binding protein 1 TAS RGD PMID:22824526 RGD:7246919 NCBI chr11:61,299,451...61,333,105
Ensembl chr11:61,299,451...61,342,596 		JBrowse link
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit TAS RGD PMID:22824526 RGD:7246919 NCBI chr19:45,349,837...45,370,573
Ensembl chr19:45,349,837...45,370,918 		JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit TAS RGD PMID:22824526 RGD:7246919 NCBI chr 2:127,257,290...127,294,144
Ensembl chr 2:127,257,290...127,294,166 		JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit TAS
IMP		 in silico assessment of alteration of DNA-protein, protein-protein interactions and observed reduction of DNA repair capacity in the context of nucleotide excision repair pathway for SNP RGD PMID:22824526 PMID:24004570 RGD:7246919, RGD:9588971 NCBI chr16:13,920,154...13,952,348
Ensembl chr16:13,920,138...13,952,348 		JBrowse link
G ERCC5 ERCC excision repair 5, endonuclease TAS RGD PMID:22824526 RGD:7246919 NCBI chr13:102,846,032...102,875,995
Ensembl chr13:102,845,831...102,875,995 		JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor TAS RGD PMID:22824526 RGD:7246919 NCBI chr10:49,434,881...49,539,538
Ensembl chr10:49,454,168...49,539,538 		JBrowse link
G ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit TAS RGD PMID:22824526 RGD:7246919 NCBI chr 5:60,866,454...60,945,070
Ensembl chr 5:60,866,454...60,945,073 		JBrowse link
G XPA XPA, DNA damage recognition and repair factor TAS RGD PMID:22824526 RGD:7246919 NCBI chr 9:97,654,398...97,697,340
Ensembl chr 9:97,674,909...97,697,340 		JBrowse link
G XPC XPC complex subunit, DNA damage recognition and repair factor TAS RGD PMID:22824526 RGD:7246919 NCBI chr 3:14,145,147...14,178,601
Ensembl chr 3:14,145,147...14,178,621 		JBrowse link
altered SWI/SNF family mediated chromatin remodeling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTL6A actin like 6A TAS RGD PMID:23355908 RGD:8694154 NCBI chr 3:179,562,926...179,588,407
Ensembl chr 3:179,562,886...179,588,407 		JBrowse link
G ARID1A AT-rich interaction domain 1A TAS RGD PMID:23355908 RGD:8694154 NCBI chr 1:26,696,015...26,782,104
Ensembl chr 1:26,693,236...26,782,104 		JBrowse link
G ARID1B AT-rich interaction domain 1B TAS RGD PMID:23355908 RGD:8694154 NCBI chr 6:156,776,026...157,210,779
Ensembl chr 6:156,776,020...157,210,779 		JBrowse link
G PBRM1 polybromo 1 TAS RGD PMID:23355908 RGD:8694154 NCBI chr 3:52,545,367...52,685,913
Ensembl chr 3:52,545,352...52,685,917 		JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 TAS RGD PMID:23355908 RGD:8694154 NCBI chr19:10,961,030...11,062,273
Ensembl chr19:10,960,932...11,079,426 		JBrowse link
base excision repair pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APEX1 apurinic/apyrimidinic endodeoxyribonuclease 1 IEA KEGG hsa:03410 NCBI chr14:20,455,226...20,457,767
Ensembl chr14:20,455,191...20,457,772 		JBrowse link
G APEX2 apurinic/apyrimidinic endodeoxyribonuclease 2 IEA KEGG hsa:03410 NCBI chr  X:55,000,363...55,009,057
Ensembl chr  X:55,000,363...55,009,057 		JBrowse link
G FEN1 flap structure-specific endonuclease 1 IEA KEGG hsa:03410 NCBI chr11:61,792,911...61,797,238
Ensembl chr11:61,792,911...61,797,238 		JBrowse link
G HMGB1 high mobility group box 1 IEA KEGG hsa:03410 NCBI chr13:30,456,704...30,617,597
Ensembl chr13:30,456,704...30,617,597 		JBrowse link
G LIG1 DNA ligase 1 IEA KEGG
RGD		 PMID: hsa:03410, RGD:1358139 NCBI chr19:48,115,445...48,170,344
Ensembl chr19:48,115,445...48,170,603 		JBrowse link
G LIG3 DNA ligase 3 IEA KEGG hsa:03410 NCBI chr17:34,980,512...35,010,872
Ensembl chr17:34,980,512...35,009,743 		JBrowse link
G MBD4 methyl-CpG binding domain 4, DNA glycosylase IEA KEGG hsa:03410 NCBI chr 3:129,430,947...129,439,948
Ensembl chr 3:129,430,947...129,440,179 		JBrowse link
G MPG N-methylpurine DNA glycosylase IEA KEGG
RGD		 PMID: hsa:03410, RGD:1358139 NCBI chr16:77,007...85,846
Ensembl chr16:77,007...85,851 		JBrowse link
G MUTYH mutY DNA glycosylase IEA KEGG hsa:03410 NCBI chr 1:45,329,242...45,340,440
Ensembl chr 1:45,329,163...45,340,893 		JBrowse link
G NEIL1 nei like DNA glycosylase 1 IEA KEGG hsa:03410 NCBI chr15:75,347,039...75,357,115
Ensembl chr15:75,346,955...75,357,115 		JBrowse link
G NEIL2 nei like DNA glycosylase 2 IEA KEGG hsa:03410 NCBI chr 8:11,769,710...11,787,345
Ensembl chr 8:11,769,639...11,787,345 		JBrowse link
G NEIL3 nei like DNA glycosylase 3 IEA KEGG hsa:03410 NCBI chr 4:177,309,874...177,371,268
Ensembl chr 4:177,309,874...177,362,936 		JBrowse link
G NTHL1 nth like DNA glycosylase 1 IEA KEGG hsa:03410 NCBI chr16:2,039,820...2,047,834
Ensembl chr16:2,039,815...2,047,866 		JBrowse link
G OGG1 8-oxoguanine DNA glycosylase TAS
IEA		 KEGG
RGD		 PMID:16221808 hsa:03410, RGD:1578408 NCBI chr 3:9,749,952...9,783,108
Ensembl chr 3:9,749,944...9,788,219 		JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 IEA KEGG hsa:03410 NCBI chr 1:226,360,691...226,408,093
Ensembl chr 1:226,360,210...226,408,154 		JBrowse link
G PARP2 poly(ADP-ribose) polymerase 2 IEA KEGG hsa:03410 NCBI chr14:20,343,635...20,357,904
Ensembl chr14:20,343,615...20,357,904 		JBrowse link
G PARP3 poly(ADP-ribose) polymerase family member 3 IEA KEGG hsa:03410 NCBI chr 3:51,942,363...51,948,867
Ensembl chr 3:51,942,345...51,948,867 		JBrowse link
G PARP4 poly(ADP-ribose) polymerase family member 4 IEA KEGG hsa:03410 NCBI chr13:24,420,931...24,512,778
Ensembl chr13:24,420,931...24,512,778 		JBrowse link
G PCNA proliferating cell nuclear antigen IEA KEGG hsa:03410 NCBI chr20:5,114,953...5,126,622
Ensembl chr20:5,114,953...5,126,626 		JBrowse link
G POLB DNA polymerase beta IEA KEGG hsa:03410 NCBI chr 8:42,338,494...42,371,808
Ensembl chr 8:42,338,454...42,371,808 		JBrowse link
G POLD1 DNA polymerase delta 1, catalytic subunit IEA KEGG hsa:03410 NCBI chr19:50,384,323...50,418,018
Ensembl chr19:50,384,204...50,418,018 		JBrowse link
G POLD2 DNA polymerase delta 2, accessory subunit IEA KEGG hsa:03410 NCBI chr 7:44,114,680...44,124,325
Ensembl chr 7:44,114,631...44,124,358 		JBrowse link
G POLD3 DNA polymerase delta 3, accessory subunit IEA KEGG hsa:03410 NCBI chr11:74,592,582...74,669,341
Ensembl chr11:74,493,851...74,669,117 		JBrowse link
G POLD4 DNA polymerase delta 4, accessory subunit IEA KEGG hsa:03410 NCBI chr11:67,350,765...67,353,596
Ensembl chr11:67,350,772...67,356,972 		JBrowse link
G POLE DNA polymerase epsilon, catalytic subunit IEA KEGG hsa:03410 NCBI chr12:132,623,762...132,687,342
Ensembl chr12:132,623,753...132,687,376 		JBrowse link
G POLE2 DNA polymerase epsilon 2, accessory subunit IEA KEGG hsa:03410 NCBI chr14:49,643,555...49,688,214
Ensembl chr14:49,643,555...49,688,422 		JBrowse link
G POLE3 DNA polymerase epsilon 3, accessory subunit IEA KEGG hsa:03410 NCBI chr 9:113,407,235...113,410,749
Ensembl chr 9:113,407,235...113,410,675 		JBrowse link
G POLE4 DNA polymerase epsilon 4, accessory subunit IEA KEGG hsa:03410 NCBI chr 2:74,958,643...74,970,128
Ensembl chr 2:74,958,643...74,970,128 		JBrowse link
G POLL DNA polymerase lambda IEA KEGG hsa:03410 NCBI chr10:101,578,882...101,588,270
Ensembl chr10:101,578,882...101,588,270 		JBrowse link
G SMUG1 single-strand-selective monofunctional uracil-DNA glycosylase 1 IEA KEGG hsa:03410 NCBI chr12:54,158,235...54,188,985
Ensembl chr12:54,121,277...54,189,008 		JBrowse link
G TDG thymine DNA glycosylase IEA KEGG hsa:03410 NCBI chr12:103,965,872...103,988,874
Ensembl chr12:103,965,822...103,988,874 		JBrowse link
G UNG uracil DNA glycosylase IEA KEGG hsa:03410 NCBI chr12:109,097,597...109,110,992
Ensembl chr12:109,097,597...109,126,725 		JBrowse link
G XRCC1 X-ray repair cross complementing 1 TAS
IEA		 KEGG
RGD		 PMID:16221808 hsa:03410, RGD:1578408 NCBI chr19:43,543,311...43,575,527
Ensembl chr19:43,543,311...43,580,473 		JBrowse link
CHD family mediated chromatin remodeling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHD3 chromodomain helicase DNA binding protein 3 TAS RGD PMID:24880148 RGD:9585661 NCBI chr17:7,884,796...7,912,755
Ensembl chr17:7,884,796...7,912,760 		JBrowse link
G CHD4 chromodomain helicase DNA binding protein 4 TAS RGD PMID:24880148 RGD:9585661 NCBI chr12:6,570,082...6,607,379
Ensembl chr12:6,570,082...6,614,524 		JBrowse link
G CHD5 chromodomain helicase DNA binding protein 5 TAS RGD PMID:24880148 RGD:9585661 NCBI chr 1:6,101,787...6,180,321
Ensembl chr 1:6,101,787...6,180,321 		JBrowse link
G GATAD2A GATA zinc finger domain containing 2A TAS RGD PMID:24880148 RGD:9585661 NCBI chr19:19,385,843...19,508,932
Ensembl chr19:19,385,826...19,508,932 		JBrowse link
G GATAD2B GATA zinc finger domain containing 2B TAS RGD PMID:24880148 RGD:9585661 NCBI chr 1:153,804,725...153,922,972
Ensembl chr 1:153,789,030...153,923,360 		JBrowse link
G HDAC1 histone deacetylase 1 TAS RGD PMID:24880148 RGD:9585661 NCBI chr 1:32,292,083...32,333,626
Ensembl chr 1:32,292,083...32,333,635 		JBrowse link
G HDAC2 histone deacetylase 2 TAS RGD PMID:24880148 RGD:9585661 NCBI chr 6:113,933,028...113,971,148
Ensembl chr 6:113,933,028...114,011,308 		JBrowse link
G MBD2 methyl-CpG binding domain protein 2 TAS RGD PMID:24880148 RGD:9585661 NCBI chr18:54,151,606...54,224,669
Ensembl chr18:54,151,606...54,224,669 		JBrowse link
G MBD3 methyl-CpG binding domain protein 3 TAS RGD PMID:24880148 RGD:9585661 NCBI chr19:1,573,596...1,592,865
Ensembl chr19:1,573,596...1,592,865 		JBrowse link
G MTA1 metastasis associated 1 TAS RGD PMID:24880148 RGD:9585661 NCBI chr14:105,419,827...105,470,729
Ensembl chr14:105,419,820...105,470,729 		JBrowse link
G MTA2 metastasis associated 1 family member 2 TAS RGD PMID:24880148 RGD:9585661 NCBI chr11:62,593,214...62,601,865
Ensembl chr11:62,593,214...62,601,865 		JBrowse link
G MTA3 metastasis associated 1 family member 3 TAS RGD PMID:24880148 RGD:9585661 NCBI chr 2:42,494,110...42,756,946
Ensembl chr 2:42,494,569...42,756,947 		JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor TAS RGD PMID:24880148 RGD:9585661 NCBI chr 1:32,651,208...32,686,211
Ensembl chr 1:32,651,142...32,686,211 		JBrowse link
G RBBP7 RB binding protein 7, chromatin remodeling factor TAS RGD PMID:24880148 RGD:9585661 NCBI chr  X:16,844,341...16,870,362
Ensembl chr  X:16,839,283...16,870,362 		JBrowse link
DNA modification pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CXXC1 CXXC finger protein 1 TAS RGD PMID:23697932 RGD:9479164 NCBI chr18:50,282,347...50,287,692
Ensembl chr18:50,282,343...50,287,839 		JBrowse link
G DNMT1 DNA methyltransferase 1 TAS RGD PMID:22770212 PMID:24825349 RGD:8695943, RGD:8695944 NCBI chr19:10,133,346...10,194,953
Ensembl chr19:10,133,342...10,231,286 		JBrowse link
G DNMT3A DNA methyltransferase 3 alpha TAS RGD PMID:22770212 PMID:24825349 RGD:8695943, RGD:8695944 NCBI chr 2:25,227,874...25,342,590
Ensembl chr 2:25,227,855...25,342,590 		JBrowse link
G DNMT3B DNA methyltransferase 3 beta TAS RGD PMID:22770212 PMID:24825349 RGD:8695943, RGD:8695944 NCBI chr20:32,762,385...32,809,356
Ensembl chr20:32,762,385...32,809,359 		JBrowse link
G EBF1 EBF transcription factor 1 TAS RGD PMID:24825349 RGD:8695944 NCBI chr 5:158,695,920...159,099,916
Ensembl chr 5:158,695,920...159,099,916 		JBrowse link
G KDM2A lysine demethylase 2A TAS RGD PMID:23697932 RGD:9479164 NCBI chr11:67,119,263...67,258,082
Ensembl chr11:67,119,263...67,258,082 		JBrowse link
G KDM2B lysine demethylase 2B TAS RGD PMID:23697932 RGD:9479164 NCBI chr12:121,408,461...121,582,279
Ensembl chr12:121,429,096...121,581,023 		JBrowse link
G KMT2A lysine methyltransferase 2A TAS RGD PMID:23697932 RGD:9479164 NCBI chr11:118,436,492...118,526,832
Ensembl chr11:118,436,456...118,526,832 		JBrowse link
G KMT2C lysine methyltransferase 2C TAS RGD PMID:23697932 RGD:9479164 NCBI chr 7:152,134,925...152,436,003
Ensembl chr 7:152,134,922...152,436,644 		JBrowse link
G MBD1 methyl-CpG binding domain protein 1 TAS RGD PMID:23324617 RGD:8695954 NCBI chr18:50,266,885...50,281,767
Ensembl chr18:50,266,882...50,281,774 		JBrowse link
G MBD2 methyl-CpG binding domain protein 2 TAS RGD PMID:23324617 RGD:8695954 NCBI chr18:54,151,606...54,224,669
Ensembl chr18:54,151,606...54,224,669 		JBrowse link
G MBD4 methyl-CpG binding domain 4, DNA glycosylase TAS RGD PMID:23324617 RGD:8695954 NCBI chr 3:129,430,947...129,439,948
Ensembl chr 3:129,430,947...129,440,179 		JBrowse link
G MECP2 methyl-CpG binding protein 2 TAS RGD PMID:23324617 RGD:8695954 NCBI chr  X:154,021,573...154,097,717
Ensembl chr  X:154,021,573...154,137,103 		JBrowse link
G NANOG Nanog homeobox TAS RGD PMID:24825349 RGD:8695944 NCBI chr12:7,789,402...7,799,146
Ensembl chr12:7,787,794...7,799,146 		JBrowse link
G OGT O-linked N-acetylglucosamine (GlcNAc) transferase TAS RGD PMID:24825349 RGD:8695944 NCBI chr  X:71,533,104...71,575,892
Ensembl chr  X:71,533,087...71,575,892 		JBrowse link
G PPARG peroxisome proliferator activated receptor gamma TAS RGD PMID:24825349 RGD:8695944 NCBI chr 3:12,287,368...12,434,344
Ensembl chr 3:12,287,368...12,434,356 		JBrowse link
G PRDM14 PR/SET domain 14 TAS RGD PMID:24825349 RGD:8695944 NCBI chr 8:70,051,651...70,071,252
Ensembl chr 8:70,051,651...70,071,693 		JBrowse link
G SIN3A SIN3 transcription regulator family member A TAS RGD PMID:24825349 RGD:8695944 NCBI chr15:75,369,379...75,455,815
Ensembl chr15:75,369,379...75,455,842 		JBrowse link
G SPI1 Spi-1 proto-oncogene TAS RGD PMID:24825349 RGD:8695944 NCBI chr11:47,354,860...47,378,547
Ensembl chr11:47,354,860...47,409,369 		JBrowse link
G TET1 tet methylcytosine dioxygenase 1 TAS RGD PMID:22770212 PMID:24825349 RGD:8695943, RGD:8695944 NCBI chr10:68,560,337...68,694,487
Ensembl chr10:68,560,337...68,694,487 		JBrowse link
G TET2 tet methylcytosine dioxygenase 2 TAS RGD PMID:22770212 PMID:24825349 RGD:8695943, RGD:8695944 NCBI chr 4:105,145,875...105,279,803
Ensembl chr 4:105,145,875...105,279,816 		JBrowse link
G TET3 tet methylcytosine dioxygenase 3 TAS RGD PMID:22770212 PMID:23697932 PMID:24825349 RGD:8695943, RGD:9479164, RGD:8695944 NCBI chr 2:73,983,631...74,135,498
Ensembl chr 2:73,984,910...74,108,176 		JBrowse link
G UHRF1 ubiquitin like with PHD and ring finger domains 1 TAS RGD PMID:23324617 RGD:8695954 NCBI chr19:4,903,080...4,962,154
Ensembl chr19:4,903,080...4,962,154 		JBrowse link
G UHRF2 ubiquitin like with PHD and ring finger domains 2 TAS RGD PMID:23324617 RGD:8695954 NCBI chr 9:6,413,199...6,507,054
Ensembl chr 9:6,413,151...6,507,054 		JBrowse link
G ZBTB33 zinc finger and BTB domain containing 33 TAS RGD PMID:23324617 RGD:8695954 NCBI chr  X:120,250,812...120,258,398
Ensembl chr  X:120,250,752...120,258,398 		JBrowse link
G ZBTB38 zinc finger and BTB domain containing 38 TAS RGD PMID:23324617 RGD:8695954 NCBI chr 3:141,324,186...141,449,792
Ensembl chr 3:141,324,213...141,449,792 		JBrowse link
G ZBTB4 zinc finger and BTB domain containing 4 TAS RGD PMID:23324617 RGD:8695954 NCBI chr17:7,459,378...7,484,249
Ensembl chr17:7,459,366...7,484,263 		JBrowse link
G ZFP57 ZFP57 zinc finger protein TAS RGD PMID:23324617 RGD:8695954 NCBI chr 6:29,672,392...29,681,152
Ensembl chr 6:29,672,483...29,681,155 		JBrowse link
histone modification pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AEBP2 AE binding protein 2 TAS RGD PMID:24148750 RGD:9479059 NCBI chr12:19,404,072...19,522,227
Ensembl chr12:19,404,045...19,720,801 		JBrowse link
G APLF aprataxin and PNKP like factor TAS RGD PMID:23288364 RGD:9068945 NCBI chr 2:68,467,585...68,580,162
Ensembl chr 2:68,467,572...68,655,862 		JBrowse link
G ASF1A anti-silencing function 1A histone chaperone TAS RGD PMID:23288364 RGD:9068945 NCBI chr 6:118,894,152...118,909,171
Ensembl chr 6:118,894,152...118,909,171 		JBrowse link
G ASF1B anti-silencing function 1B histone chaperone TAS RGD PMID:23288364 RGD:9068945 NCBI chr19:14,119,512...14,136,589
Ensembl chr19:14,119,512...14,136,613 		JBrowse link
G ASH1L ASH1 like histone lysine methyltransferase TAS RGD PMID:23200123 RGD:7242632 NCBI chr 1:155,335,268...155,563,202
Ensembl chr 1:155,335,268...155,563,162 		JBrowse link
G ASH2L ASH2 like, histone lysine methyltransferase complex subunit TAS RGD PMID:22663077 RGD:9479053 NCBI chr 8:38,105,493...38,140,080
Ensembl chr 8:38,105,493...38,144,076 		JBrowse link
G BAP1 BRCA1 associated protein 1 TAS RGD PMID:24647359 RGD:9479061 NCBI chr 3:52,401,008...52,410,008
Ensembl chr 3:52,401,008...52,410,008 		JBrowse link
G BIRC5 baculoviral IAP repeat containing 5 TAS RGD PMID:23642229 RGD:9479074 NCBI chr17:78,214,253...78,225,635
Ensembl chr17:78,214,186...78,225,636 		JBrowse link
G BMI1 BMI1 proto-oncogene, polycomb ring finger TAS RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr10:22,321,099...22,331,484
Ensembl chr10:22,321,099...22,331,484 		JBrowse link
G BPTF bromodomain PHD finger transcription factor TAS RGD PMID:24686119 PMID:23642229 RGD:9479075, RGD:9479074 NCBI chr17:67,825,503...67,984,378
Ensembl chr17:67,825,503...67,984,378 		JBrowse link
G BRCC3 BRCA1/BRCA2-containing complex subunit 3 TAS RGD PMID:24647359 RGD:9479061 NCBI chr  X:155,071,508...155,123,077
Ensembl chr  X:155,071,420...155,123,077 		JBrowse link
G BRD1 bromodomain containing 1 TAS RGD PMID:24686119 RGD:9479075 NCBI chr22:49,773,278...49,827,873
Ensembl chr22:49,773,283...49,827,873 		JBrowse link
G BRD2 bromodomain containing 2 TAS RGD PMID:24686119 RGD:9479075 NCBI chr 6:32,968,594...32,981,505
Ensembl chr 6:32,968,594...32,981,505 		JBrowse link
G BRD3 bromodomain containing 3 TAS RGD PMID:24686119 RGD:9479075 NCBI chr 9:134,030,305...134,068,548
Ensembl chr 9:134,030,305...134,068,535 		JBrowse link
G BRD4 bromodomain containing 4 TAS RGD PMID:24686119 RGD:9479075 NCBI chr19:15,235,519...15,332,539
Ensembl chr19:15,235,519...15,332,545 		JBrowse link
G BRD7 bromodomain containing 7 TAS RGD PMID:24686119 RGD:9479075 NCBI chr16:50,315,957...50,368,988
Ensembl chr16:50,313,487...50,368,988 		JBrowse link
G BRDT bromodomain testis associated TAS RGD PMID:24686119 RGD:9479075 NCBI chr 1:91,949,371...92,014,428
Ensembl chr 1:91,949,343...92,014,426 		JBrowse link
G BRF1 BRF1 RNA polymerase III transcription initiation factor subunit TAS RGD PMID:23642229 RGD:9479074 NCBI chr14:105,209,286...105,315,589
Ensembl chr14:105,209,286...105,315,589 		JBrowse link
G CARM1 coactivator associated arginine methyltransferase 1 TAS RGD PMID:24583552 RGD:9479047 NCBI chr19:10,871,553...10,923,075
Ensembl chr19:10,871,553...10,923,075 		JBrowse link
G CBX2 chromobox 2 TAS RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr17:79,777,311...79,787,983
Ensembl chr17:79,778,148...79,787,983 		JBrowse link
G CBX4 chromobox 4 TAS RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr17:79,833,156...79,839,440
Ensembl chr17:79,833,156...79,839,440 		JBrowse link
G CBX5 chromobox 5 TAS RGD PMID:23642229 RGD:9479074 NCBI chr12:54,230,942...54,280,122
Ensembl chr12:54,230,942...54,280,133 		JBrowse link
G CBX6 chromobox 6 TAS RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr22:38,861,422...38,872,216
Ensembl chr22:38,861,422...38,872,249 		JBrowse link
G CBX7 chromobox 7 TAS RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr22:39,130,772...39,152,680
Ensembl chr22:39,120,167...39,152,680 		JBrowse link
G CBX8 chromobox 8 TAS RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr17:79,792,132...79,797,077
Ensembl chr17:79,792,132...79,801,683 		JBrowse link
G CHAF1A chromatin assembly factor 1 subunit A TAS RGD PMID:23288364 RGD:9068945 NCBI chr19:4,402,640...4,450,830
Ensembl chr19:4,402,640...4,445,018 		JBrowse link
G CHAF1B chromatin assembly factor 1 subunit B TAS RGD PMID:23288364 RGD:9068945 NCBI chr21:36,385,392...36,419,015
Ensembl chr21:36,385,392...36,419,015 		JBrowse link
G CHD1 chromodomain helicase DNA binding protein 1 TAS RGD PMID:23642229 RGD:9479074 NCBI chr 5:98,853,985...98,929,007
Ensembl chr 5:98,853,985...98,929,007 		JBrowse link
G CREBBP CREB binding protein TAS RGD PMID:21151613 PMID:24686119 RGD:9104959, RGD:9479075 NCBI chr16:3,725,054...3,880,713
Ensembl chr16:3,725,054...3,880,713 		JBrowse link
G CXXC1 CXXC finger protein 1 TAS RGD PMID:22663077 RGD:9479053 NCBI chr18:50,282,347...50,287,692
Ensembl chr18:50,282,343...50,287,839 		JBrowse link
G DAXX death domain associated protein TAS RGD PMID:23288364 RGD:9068945 NCBI chr 6:33,318,558...33,322,959
Ensembl chr 6:33,318,558...33,323,016 		JBrowse link
G DOT1L DOT1 like histone lysine methyltransferase TAS RGD PMID:23200123 RGD:7242632 NCBI chr19:2,163,933...2,232,578
Ensembl chr19:2,163,933...2,232,578 		JBrowse link
G DPF3 double PHD fingers 3 TAS RGD PMID:23642229 RGD:9479074 NCBI chr14:72,609,034...72,894,101
Ensembl chr14:72,609,034...72,894,101 		JBrowse link
G DPY30 dpy-30 histone methyltransferase complex regulatory subunit TAS RGD PMID:22663077 RGD:9479053 NCBI chr 2:32,011,649...32,039,835
Ensembl chr 2:31,867,809...32,039,805 		JBrowse link
G EHMT1 euchromatic histone lysine methyltransferase 1 TAS RGD PMID:23200123 RGD:7242632 NCBI chr 9:137,619,005...137,836,127
Ensembl chr 9:137,618,992...137,870,016 		JBrowse link
G EHMT2 euchromatic histone lysine methyltransferase 2 TAS RGD PMID:23200123 PMID:23642229 RGD:7242632, RGD:9479074 NCBI chr 6:31,879,759...31,897,698
Ensembl chr 6:31,879,759...31,897,698 		JBrowse link
G EP300 E1A binding protein p300 TAS RGD PMID:21151613 RGD:9104959 NCBI chr22:41,092,592...41,180,077
Ensembl chr22:41,092,592...41,180,077 		JBrowse link
G EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit TAS RGD PMID:23200123 RGD:7242632 NCBI chr 7:148,807,383...148,884,291
Ensembl chr 7:148,807,257...148,884,321 		JBrowse link
G H2AX H2A.X variant histone TAS RGD PMID:24614311 RGD:9075965 NCBI chr11:119,093,874...119,095,465
Ensembl chr11:119,093,874...119,095,465 		JBrowse link
G H2AZ1 H2A.Z variant histone 1 TAS RGD PMID:24696452 RGD:9074213 NCBI chr 4:99,948,088...99,950,275
Ensembl chr 4:99,948,086...99,950,355 		JBrowse link
G H3-3A H3.3 histone A TAS RGD PMID:24614311 RGD:9075965 NCBI chr 1:226,061,831...226,072,019
Ensembl chr 1:226,061,851...226,072,019 		JBrowse link
G H3-3B H3.3 histone B TAS RGD PMID:24614311 RGD:9075965 NCBI chr17:75,776,434...75,779,779
Ensembl chr17:75,776,434...75,785,893 		JBrowse link
G HAT1 histone acetyltransferase 1 TAS RGD PMID:21151613 RGD:9104959 NCBI chr 2:171,922,461...171,983,686
Ensembl chr 2:171,922,448...171,983,686 		JBrowse link
G HCFC1 host cell factor C1 TAS RGD PMID:22663077 RGD:9479053 NCBI chr  X:153,947,557...153,971,818
Ensembl chr  X:153,947,557...153,971,818 		JBrowse link
G HDAC1 histone deacetylase 1 TAS RGD PMID:21151613 RGD:9104959 NCBI chr 1:32,292,083...32,333,626
Ensembl chr 1:32,292,083...32,333,635 		JBrowse link
G HDAC10 histone deacetylase 10 TAS RGD PMID:21151613 RGD:9104959 NCBI chr22:50,245,183...50,251,265
Ensembl chr22:50,245,183...50,251,405 		JBrowse link
G HDAC11 histone deacetylase 11 TAS RGD PMID:21151613 RGD:9104959 NCBI chr 3:13,480,306...13,506,416
Ensembl chr 3:13,479,724...13,506,424 		JBrowse link
G HDAC2 histone deacetylase 2 TAS RGD PMID:21151613 RGD:9104959 NCBI chr 6:113,933,028...113,971,148
Ensembl chr 6:113,933,028...114,011,308 		JBrowse link
G HDAC3 histone deacetylase 3 TAS RGD PMID:21151613 RGD:9104959 NCBI chr 5:141,620,881...141,636,849
Ensembl chr 5:141,620,876...141,636,849 		JBrowse link
G HDAC4 histone deacetylase 4 TAS RGD PMID:21151613 RGD:9104959 NCBI chr 2:239,048,168...239,401,649
Ensembl chr 2:239,048,168...239,401,654 		JBrowse link
G HDAC5 histone deacetylase 5 TAS RGD PMID:21151613 RGD:9104959 NCBI chr17:44,076,753...44,123,641
Ensembl chr17:44,076,746...44,123,702 		JBrowse link
G HDAC6 histone deacetylase 6 TAS RGD PMID:21151613 RGD:9104959 NCBI chr  X:48,801,398...48,824,982
Ensembl chr  X:48,801,377...48,824,982 		JBrowse link
G HDAC7 histone deacetylase 7 TAS RGD PMID:21151613 RGD:9104959 NCBI chr12:47,782,722...47,821,344
Ensembl chr12:47,782,722...47,833,132 		JBrowse link
G HDAC8 histone deacetylase 8 TAS RGD PMID:21151613 RGD:9104959 NCBI chr  X:72,329,516...72,572,843
Ensembl chr  X:72,329,516...72,573,101 		JBrowse link
G HDAC9 histone deacetylase 9 TAS RGD PMID:21151613 RGD:9104959 NCBI chr 7:18,086,825...19,002,416
Ensembl chr 7:18,086,949...19,002,416 		JBrowse link
G HIRA histone cell cycle regulator TAS RGD PMID:23288364 RGD:9068945 NCBI chr22:19,330,698...19,431,733
Ensembl chr22:19,330,698...19,447,450 		JBrowse link
G HJURP Holliday junction recognition protein TAS RGD PMID:23288364 RGD:9068945 NCBI chr 2:233,836,702...233,854,535
Ensembl chr 2:233,833,416...233,854,566 		JBrowse link
G ING2 inhibitor of growth family member 2 TAS RGD PMID:23642229 RGD:9479074 NCBI chr 4:183,505,058...183,512,429
Ensembl chr 4:183,505,058...183,512,429 		JBrowse link
G JMJD1C jumonji domain containing 1C TAS RGD PMID:23200123 RGD:7242632 NCBI chr10:63,167,225...63,521,890
Ensembl chr10:63,167,221...63,521,850 		JBrowse link
G KAT2A lysine acetyltransferase 2A TAS RGD PMID:21151613 PMID:23642229 RGD:9104959, RGD:9479074 NCBI chr17:42,113,111...42,121,367
Ensembl chr17:42,113,111...42,121,367 		JBrowse link
G KAT2B lysine acetyltransferase 2B TAS RGD PMID:21151613 RGD:9104959 NCBI chr 3:20,040,446...20,154,404
Ensembl chr 3:20,040,446...20,154,404 		JBrowse link
G KAT5 lysine acetyltransferase 5 TAS RGD PMID:21151613 RGD:9104959 NCBI chr11:65,712,018...65,719,604
Ensembl chr11:65,711,996...65,719,604 		JBrowse link
G KAT6A lysine acetyltransferase 6A TAS RGD PMID:21151613 RGD:9104959 NCBI chr 8:41,929,479...42,051,987
Ensembl chr 8:41,929,479...42,051,994 		JBrowse link
G KAT6B lysine acetyltransferase 6B TAS RGD PMID:21151613 RGD:9104959 NCBI chr10:74,824,936...75,032,624
Ensembl chr10:74,824,927...75,032,624 		JBrowse link
G KAT7 lysine acetyltransferase 7 TAS RGD PMID:21151613 RGD:9104959 NCBI chr17:49,788,681...49,835,026
Ensembl chr17:49,788,624...49,835,026 		JBrowse link
G KAT8 lysine acetyltransferase 8 TAS RGD PMID:21151613 RGD:9104959 NCBI chr16:31,117,664...31,131,393
Ensembl chr16:31,114,489...31,131,393 		JBrowse link
G KDM1A lysine demethylase 1A TAS RGD PMID:23200123 RGD:7242632 NCBI chr 1:23,019,468...23,083,689
Ensembl chr 1:23,019,443...23,083,689 		JBrowse link
G KDM1B lysine demethylase 1B TAS RGD PMID:23200123 RGD:7242632 NCBI chr 6:18,155,422...18,223,854
Ensembl chr 6:18,155,329...18,223,854 		JBrowse link
G KDM2A lysine demethylase 2A TAS RGD PMID:23200123 RGD:7242632 NCBI chr11:67,119,263...67,258,082
Ensembl chr11:67,119,263...67,258,082 		JBrowse link
G KDM2B lysine demethylase 2B TAS RGD PMID:23200123 RGD:7242632 NCBI chr12:121,408,461...121,582,279
Ensembl chr12:121,429,096...121,581,023 		JBrowse link
G KDM3A lysine demethylase 3A TAS RGD PMID:23200123 RGD:7242632 NCBI chr 2:86,437,044...86,492,716
Ensembl chr 2:86,440,647...86,492,716 		JBrowse link
G KDM3B lysine demethylase 3B TAS RGD PMID:23200123 RGD:7242632 NCBI chr 5:138,352,685...138,437,027
Ensembl chr 5:138,352,685...138,437,028 		JBrowse link
G KDM4A lysine demethylase 4A TAS RGD PMID:23200123 PMID:23642229 PMID:24035451 RGD:7242632, RGD:9479074, RGD:9479148 NCBI chr 1:43,650,149...43,705,518
Ensembl chr 1:43,650,149...43,705,518 		JBrowse link
G KDM4B lysine demethylase 4B TAS RGD PMID:23200123 RGD:7242632 NCBI chr19:4,969,113...5,153,598
Ensembl chr19:4,969,113...5,153,598 		JBrowse link
G KDM4C lysine demethylase 4C TAS RGD PMID:23200123 RGD:7242632 NCBI chr 9:6,720,863...7,175,648
Ensembl chr 9:6,757,641...7,175,648 		JBrowse link
G KDM4D lysine demethylase 4D TAS RGD PMID:23200123 RGD:7242632 NCBI chr11:94,973,709...94,999,519
Ensembl chr11:94,973,709...94,999,519 		JBrowse link
G KDM5A lysine demethylase 5A TAS RGD PMID:23200123 RGD:7242632 NCBI chr12:280,057...389,320
Ensembl chr12:280,057...389,320 		JBrowse link
G KDM5B lysine demethylase 5B TAS RGD PMID:23200123 RGD:7242632 NCBI chr 1:202,724,495...202,808,421
Ensembl chr 1:202,724,495...202,808,487 		JBrowse link
G KDM5C lysine demethylase 5C TAS RGD PMID:23200123 RGD:7242632 NCBI chr  X:53,176,277...53,225,207
Ensembl chr  X:53,176,283...53,225,422 		JBrowse link
G KDM5D lysine demethylase 5D TAS RGD PMID:23200123 RGD:7242632 NCBI chr  Y:19,703,865...19,744,726
Ensembl chr  Y:19,703,865...19,744,939 		JBrowse link
G KDM6A lysine demethylase 6A TAS RGD PMID:22663077 PMID:23200123 RGD:9479053, RGD:7242632 NCBI chr  X:44,873,188...45,112,779
Ensembl chr  X:44,873,188...45,112,779 		JBrowse link
G KDM6B lysine demethylase 6B TAS RGD PMID:23200123 RGD:7242632 NCBI chr17:7,834,217...7,854,796
Ensembl chr17:7,834,217...7,854,796 		JBrowse link
G KDM7A lysine demethylase 7A TAS RGD PMID:23200123 RGD:7242632 NCBI chr 7:140,084,746...140,176,983
Ensembl chr 7:140,084,746...140,176,983 		JBrowse link
G KDM8 lysine demethylase 8 TAS RGD PMID:23200123 RGD:7242632 NCBI chr16:27,203,526...27,221,768
Ensembl chr16:27,203,508...27,221,768 		JBrowse link
G KMT2A lysine methyltransferase 2A TAS RGD PMID:23200123 PMID:22663077 RGD:7242632, RGD:9479053 NCBI chr11:118,436,492...118,526,832
Ensembl chr11:118,436,456...118,526,832 		JBrowse link
G KMT2B lysine methyltransferase 2B TAS RGD PMID:23200123 PMID:22663077 RGD:7242632, RGD:9479053 NCBI chr19:35,718,003...35,738,878
Ensembl chr19:35,717,973...35,738,880 		JBrowse link
G KMT2C lysine methyltransferase 2C TAS RGD PMID:23200123 PMID:22663077 RGD:7242632, RGD:9479053 NCBI chr 7:152,134,925...152,436,003
Ensembl chr 7:152,134,922...152,436,644 		JBrowse link
G KMT2D lysine methyltransferase 2D TAS RGD PMID:23200123 PMID:22663077 RGD:7242632, RGD:9479053 NCBI chr12:49,018,978...49,060,794
Ensembl chr12:49,018,975...49,060,794 		JBrowse link
G KMT2E lysine methyltransferase 2E (inactive) TAS RGD PMID:23200123 RGD:7242632 NCBI chr 7:105,014,205...105,115,019
Ensembl chr 7:104,940,943...105,115,019 		JBrowse link
G KMT5A lysine methyltransferase 5A TAS RGD PMID:23200123 RGD:7242632 NCBI chr12:123,384,132...123,409,353
Ensembl chr12:123,384,132...123,409,353 		JBrowse link
G KMT5B lysine methyltransferase 5B TAS RGD PMID:23200123 RGD:7242632 NCBI chr11:68,154,863...68,213,648
Ensembl chr11:68,154,863...68,213,852 		JBrowse link
G KMT5C lysine methyltransferase 5C TAS RGD PMID:23200123 RGD:7242632 NCBI chr19:55,339,876...55,348,121
Ensembl chr19:55,339,853...55,348,121 		JBrowse link
G L3MBTL1 L3MBTL histone methyl-lysine binding protein 1 TAS RGD PMID:23642229 RGD:9479074 NCBI chr20:43,507,697...43,550,954
Ensembl chr20:43,489,442...43,550,954 		JBrowse link
G LBR lamin B receptor TAS RGD PMID:24035451 RGD:9479148 NCBI chr 1:225,401,502...225,428,821
Ensembl chr 1:225,401,502...225,428,925 		JBrowse link
G MACROH2A1 macroH2A.1 histone TAS RGD PMID:24696452 RGD:9074213 NCBI chr 5:135,334,381...135,399,887
Ensembl chr 5:135,334,381...135,399,914 		JBrowse link
G MACROH2A2 macroH2A.2 histone TAS RGD PMID:24696452 RGD:9074213 NCBI chr10:70,052,846...70,112,282
Ensembl chr10:70,052,544...70,112,282 		JBrowse link
G MCPH1 microcephalin 1 TAS RGD PMID:23642229 RGD:9479074 NCBI chr 8:6,406,627...6,648,508
Ensembl chr 8:6,406,592...6,648,508 		JBrowse link
G MDC1 mediator of DNA damage checkpoint 1 TAS RGD PMID:23642229 RGD:9479074 NCBI chr 6:30,699,807...30,717,281
Ensembl chr 6:30,699,807...30,717,447 		JBrowse link
G MEN1 menin 1 TAS RGD PMID:22663077 RGD:9479053 NCBI chr11:64,803,516...64,811,294
Ensembl chr11:64,803,510...64,811,294 		JBrowse link
G MYSM1 Myb like, SWIRM and MPN domains 1 TAS RGD PMID:24647359 RGD:9479061 NCBI chr 1:58,654,743...58,700,062
Ensembl chr 1:58,643,440...58,700,090 		JBrowse link
G NAP1L1 nucleosome assembly protein 1 like 1 TAS RGD PMID:23288364 RGD:9068945 NCBI chr12:76,036,585...76,084,685
Ensembl chr12:76,036,585...76,084,735 		JBrowse link
G NASP nuclear autoantigenic sperm protein TAS RGD PMID:23288364 RGD:9068945 NCBI chr 1:45,584,041...45,618,893
Ensembl chr 1:45,583,846...45,618,904 		JBrowse link
G NCOA6 nuclear receptor coactivator 6 TAS RGD PMID:22663077 RGD:9479053 NCBI chr20:34,714,774...34,825,651
Ensembl chr20:34,689,097...34,825,651 		JBrowse link
G NSD1 nuclear receptor binding SET domain protein 1 TAS RGD PMID:23200123 RGD:7242632 NCBI chr 5:177,131,798...177,300,213
Ensembl chr 5:177,131,830...177,300,213 		JBrowse link
G NSD3 nuclear receptor binding SET domain protein 3 TAS RGD PMID:23200123 RGD:7242632 NCBI chr 8:38,269,704...38,382,271
Ensembl chr 8:38,269,704...38,382,272 		JBrowse link
G ORC1 origin recognition complex subunit 1 TAS RGD PMID:23642229 RGD:9479074 NCBI chr 1:52,372,829...52,409,503
Ensembl chr 1:52,372,829...52,404,423 		JBrowse link
G PAGR1 PAXIP1 associated glutamate rich protein 1 TAS RGD PMID:22663077 RGD:9479053 NCBI chr16:29,816,152...29,822,489
Ensembl chr16:29,816,152...29,822,489 		JBrowse link
G PAXIP1 PAX interacting protein 1 TAS RGD PMID:22663077 RGD:9479053 NCBI chr 7:154,943,690...155,003,411
Ensembl chr 7:154,943,687...155,003,124 		JBrowse link
G PBRM1 polybromo 1 TAS RGD PMID:24686119 RGD:9479075 NCBI chr 3:52,545,367...52,685,913
Ensembl chr 3:52,545,352...52,685,917 		JBrowse link
G PCGF1 polycomb group ring finger 1 TAS RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr 2:74,505,043...74,507,695
Ensembl chr 2:74,505,043...74,507,695 		JBrowse link
G PCGF2 polycomb group ring finger 2 TAS RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr17:38,733,898...38,749,792
Ensembl chr17:38,733,898...38,749,817 		JBrowse link
G PCGF3 polycomb group ring finger 3 TAS RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr 4:705,832...770,089
Ensembl chr 4:705,748...770,089 		JBrowse link
G PCGF5 polycomb group ring finger 5 TAS RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr10:91,156,219...91,284,337
Ensembl chr10:91,163,012...91,284,337 		JBrowse link
G PCGF6 polycomb group ring finger 6 TAS RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr10:103,302,796...103,351,140
Ensembl chr10:103,302,796...103,351,144 		JBrowse link
G PHC1 polyhomeotic homolog 1 TAS RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr12:8,913,843...8,941,467
Ensembl chr12:8,913,896...8,941,467 		JBrowse link
G PHC2 polyhomeotic homolog 2 TAS RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr 1:33,323,626...33,431,095
Ensembl chr 1:33,323,623...33,431,095 		JBrowse link
G PHC3 polyhomeotic homolog 3 TAS RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr 3:170,087,584...170,181,733
Ensembl chr 3:170,086,732...170,181,749 		JBrowse link
G PHF1 PHD finger protein 1 TAS RGD PMID:24035451 PMID:23642229 RGD:9479148, RGD:9479074 NCBI chr 6:33,410,412...33,416,439
Ensembl chr 6:33,410,399...33,416,453 		JBrowse link
G PHF19 PHD finger protein 19 TAS RGD PMID:24035451 PMID:23642229 RGD:9479148, RGD:9479074 NCBI chr 9:120,855,651...120,904,128
Ensembl chr 9:120,855,651...120,894,896 		JBrowse link
G PHF2 PHD finger protein 2 TAS RGD PMID:23200123 RGD:7242632 NCBI chr 9:93,576,584...93,679,587
Ensembl chr 9:93,576,584...93,679,587 		JBrowse link
G PHF8 PHD finger protein 8 TAS RGD PMID:23200123 RGD:7242632 NCBI chr  X:53,936,680...54,048,936
Ensembl chr  X:53,936,676...54,048,958 		JBrowse link
G PRDM16 PR/SET domain 16 TAS RGD PMID:23200123 RGD:7242632 NCBI chr 1:3,069,203...3,438,621
Ensembl chr 1:3,069,168...3,438,621 		JBrowse link
G PRDM2 PR/SET domain 2 TAS RGD PMID:23200123 RGD:7242632 NCBI chr 1:13,700,188...13,825,079
Ensembl chr 1:13,700,188...13,825,079 		JBrowse link
G PRDM6 PR/SET domain 6 TAS RGD PMID:23200123 RGD:7242632 NCBI chr 5:123,089,241...123,194,266
Ensembl chr 5:123,089,241...123,194,266 		JBrowse link
G PRDM8 PR/SET domain 8 TAS RGD PMID:23200123 RGD:7242632 NCBI chr 4:80,185,270...80,204,329
Ensembl chr 4:80,183,879...80,204,329 		JBrowse link
G PRDM9 PR/SET domain 9 TAS RGD PMID:23200123 RGD:7242632 NCBI chr 5:23,507,155...23,528,093
Ensembl chr 5:23,443,586...23,528,093 		JBrowse link
G PRMT1 protein arginine methyltransferase 1 TAS RGD PMID:24583552 RGD:9479047 NCBI chr19:49,676,153...49,688,447
Ensembl chr19:49,675,786...49,689,029 		JBrowse link
G PRMT2 protein arginine methyltransferase 2 TAS RGD PMID:24583552 RGD:9479047 NCBI chr21:46,635,674...46,665,124
Ensembl chr21:46,635,595...46,665,124 		JBrowse link
G PRMT5 protein arginine methyltransferase 5 TAS RGD PMID:24583552 RGD:9479047 NCBI chr14:22,920,529...22,929,376
Ensembl chr14:22,920,525...22,929,408 		JBrowse link
G PRMT6 protein arginine methyltransferase 6 TAS RGD PMID:24583552 RGD:9479047 NCBI chr 1:107,056,674...107,059,294
Ensembl chr 1:107,056,674...107,067,636 		JBrowse link
G PRMT7 protein arginine methyltransferase 7 TAS RGD PMID:24583552 RGD:9479047 NCBI chr16:68,311,019...68,360,870
Ensembl chr16:68,310,951...68,360,852 		JBrowse link
G RAG2 recombination activating 2 TAS RGD PMID:23642229 RGD:9479074 NCBI chr11:36,590,996...36,598,236
Ensembl chr11:36,575,574...36,598,279 		JBrowse link
G RBBP5 RB binding protein 5, histone lysine methyltransferase complex subunit TAS RGD PMID:22663077 RGD:9479053 NCBI chr 1:205,086,142...205,121,978
Ensembl chr 1:205,086,142...205,122,015 		JBrowse link
G RING1 ring finger protein 1 TAS RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr 6:33,208,500...33,212,716
Ensembl chr 6:33,208,500...33,212,722 		JBrowse link
G RNF2 ring finger protein 2 TAS RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr 1:185,045,558...185,102,603
Ensembl chr 1:185,045,526...185,102,603 		JBrowse link
G SETD1A SET domain containing 1A, histone lysine methyltransferase TAS RGD PMID:23200123 PMID:22663077 RGD:7242632, RGD:9479053 NCBI chr16:30,957,754...30,984,664
Ensembl chr16:30,957,294...30,984,664 		JBrowse link
G SETD1B SET domain containing 1B, histone lysine methyltransferase TAS RGD PMID:23200123 PMID:22663077 RGD:7242632, RGD:9479053 NCBI chr12:121,790,155...121,832,656
Ensembl chr12:121,804,009...121,832,656 		JBrowse link
G SETD2 SET domain containing 2, histone lysine methyltransferase TAS RGD PMID:23200123 RGD:7242632 NCBI chr 3:47,016,436...47,164,840
Ensembl chr 3:47,016,428...47,164,113 		JBrowse link
G SETD7 SET domain containing 7, histone lysine methyltransferase TAS RGD PMID:23200123 RGD:7242632 NCBI chr 4:139,492,974...139,556,219
Ensembl chr 4:139,495,941...139,606,699 		JBrowse link
G SETDB1 SET domain bifurcated histone lysine methyltransferase 1 TAS RGD PMID:23200123 RGD:7242632 NCBI chr 1:150,926,263...150,964,737
Ensembl chr 1:150,926,263...150,964,744 		JBrowse link
G SGF29 SAGA complex associated factor 29 TAS RGD PMID:24035451 PMID:23642229 RGD:9479148, RGD:9479074 NCBI chr16:28,553,920...28,591,790
Ensembl chr16:28,553,915...28,591,790 		JBrowse link
G SIRT1 sirtuin 1 TAS RGD PMID:21151613 RGD:9104959 NCBI chr10:67,884,656...67,918,390
Ensembl chr10:67,884,656...67,918,390 		JBrowse link
G SIRT2 sirtuin 2 TAS RGD PMID:21151613 RGD:9104959 NCBI chr19:38,878,555...38,899,618
Ensembl chr19:38,878,555...38,899,862 		JBrowse link
G SIRT3 sirtuin 3 TAS RGD PMID:21151613 RGD:9104959 NCBI chr11:215,030...236,931
Ensembl chr11:215,030...236,931 		JBrowse link
G SIRT4 sirtuin 4 TAS RGD PMID:21151613 RGD:9104959 NCBI chr12:120,291,780...120,313,249
Ensembl chr12:120,302,316...120,313,249 		JBrowse link
G SIRT5 sirtuin 5 TAS RGD PMID:21151613 RGD:9104959 NCBI chr 6:13,574,274...13,615,158
Ensembl chr 6:13,574,227...13,615,158 		JBrowse link
G SIRT6 sirtuin 6 TAS RGD PMID:21151613 RGD:9104959 NCBI chr19:4,174,109...4,182,563
Ensembl chr19:4,174,109...4,182,566 		JBrowse link
G SIRT7 sirtuin 7 TAS RGD PMID:21151613 RGD:9104959 NCBI chr17:81,911,939...81,918,176
Ensembl chr17:81,911,939...81,921,323 		JBrowse link
G SMARCA2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 TAS RGD PMID:24686119 RGD:9479075 NCBI chr 9:2,015,347...2,193,624
Ensembl chr 9:1,980,290...2,193,624 		JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 TAS RGD PMID:24686119 RGD:9479075 NCBI chr19:10,961,030...11,062,273
Ensembl chr19:10,960,932...11,079,426 		JBrowse link
G SMYD1 SET and MYND domain containing 1 TAS RGD PMID:23200123 RGD:7242632 NCBI chr 2:88,067,825...88,113,384
Ensembl chr 2:88,067,825...88,113,384 		JBrowse link
G SMYD2 SET and MYND domain containing 2 TAS RGD PMID:23200123 RGD:7242632 NCBI chr 1:214,281,159...214,337,131
Ensembl chr 1:214,281,102...214,337,131 		JBrowse link
G SMYD3 SET and MYND domain containing 3 TAS RGD PMID:23200123 RGD:7242632 NCBI chr 1:245,749,347...246,507,279
Ensembl chr 1:245,749,342...246,507,312 		JBrowse link
G SPIN1 spindlin 1 TAS RGD PMID:24035451 RGD:9479148 NCBI chr 9:88,388,444...88,478,694
Ensembl chr 9:88,388,430...88,478,694 		JBrowse link
G SSRP1 structure specific recognition protein 1 TAS RGD PMID:23288364 RGD:9068945 NCBI chr11:57,325,988...57,335,892
Ensembl chr11:57,325,986...57,335,892 		JBrowse link
G SUPT16H SPT16 homolog, facilitates chromatin remodeling subunit TAS RGD PMID:23288364 RGD:9068945 NCBI chr14:21,351,476...21,384,019
Ensembl chr14:21,351,476...21,384,019 		JBrowse link
G SUV39H1 SUV39H1 histone lysine methyltransferase TAS RGD PMID:23200123 RGD:7242632 NCBI chr  X:48,695,554...48,709,016
Ensembl chr  X:48,695,554...48,709,016 		JBrowse link
G SUV39H2 SUV39H2 histone lysine methyltransferase TAS RGD PMID:23200123 RGD:7242632 NCBI chr10:14,878,866...14,904,315
Ensembl chr10:14,878,820...14,904,315 		JBrowse link
G TAF1 TATA-box binding protein associated factor 1 TAS RGD PMID:23642229 PMID:24686119 RGD:9479074, RGD:9479075 NCBI chr  X:71,366,357...71,530,525
Ensembl chr  X:71,366,222...71,532,374 		JBrowse link
G TDRD3 tudor domain containing 3 TAS RGD PMID:24035451 PMID:23211769 RGD:9479148, RGD:9479163 NCBI chr13:60,395,533...60,573,879
Ensembl chr13:60,396,457...60,573,878 		JBrowse link
G TP53BP1 tumor protein p53 binding protein 1 TAS RGD PMID:24035451 PMID:23642229 RGD:9479148, RGD:9479074 NCBI chr15:43,403,061...43,510,640
Ensembl chr15:43,403,061...43,510,728 		JBrowse link
G TRIM24 tripartite motif containing 24 TAS RGD PMID:23642229 RGD:9479074 NCBI chr 7:138,460,259...138,589,996
Ensembl chr 7:138,460,259...138,589,996 		JBrowse link
G TRIM33 tripartite motif containing 33 TAS RGD PMID:23642229 PMID:24686119 RGD:9479074, RGD:9479075 NCBI chr 1:114,392,790...114,511,203
Ensembl chr 1:114,392,790...114,511,203 		JBrowse link
G UHRF1 ubiquitin like with PHD and ring finger domains 1 TAS RGD PMID:24035451 PMID:23642229 RGD:9479148, RGD:9479074 NCBI chr19:4,903,080...4,962,154
Ensembl chr19:4,903,080...4,962,154 		JBrowse link
G USP12 ubiquitin specific peptidase 12 TAS RGD PMID:24647359 RGD:9479061 NCBI chr13:27,066,156...27,171,811
Ensembl chr13:27,066,156...27,171,811 		JBrowse link
G USP16 ubiquitin specific peptidase 16 TAS RGD PMID:24647359 RGD:9479061 NCBI chr21:29,024,668...29,054,488
Ensembl chr21:29,024,629...29,054,488 		JBrowse link
G USP21 ubiquitin specific peptidase 21 TAS RGD PMID:24647359 RGD:9479061 NCBI chr 1:161,159,500...161,165,723
Ensembl chr 1:161,159,450...161,165,723 		JBrowse link
G USP22 ubiquitin specific peptidase 22 TAS RGD PMID:24647359 RGD:9479061 NCBI chr17:20,999,596...21,043,419
Ensembl chr17:20,999,596...21,043,760 		JBrowse link
G USP3 ubiquitin specific peptidase 3 TAS RGD PMID:24647359 RGD:9479061 NCBI chr15:63,504,593...63,594,633
Ensembl chr15:63,504,511...63,594,640 		JBrowse link
G USP44 ubiquitin specific peptidase 44 TAS RGD PMID:24647359 RGD:9479061 NCBI chr12:95,516,560...95,551,681
Ensembl chr12:95,516,560...95,551,476 		JBrowse link
G WDR5 WD repeat domain 5 TAS RGD PMID:22663077 PMID:23642229 RGD:9479053, RGD:9479074 NCBI chr 9:134,135,199...134,159,968
Ensembl chr 9:134,135,365...134,159,968 		JBrowse link
G WDR82 WD repeat domain 82 TAS RGD PMID:22663077 RGD:9479053 NCBI chr 3:52,254,434...52,278,649
Ensembl chr 3:52,254,434...52,288,020 		JBrowse link
G YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta TAS RGD PMID:23642229 RGD:9479074 NCBI chr 8:100,916,523...100,953,382
Ensembl chr 8:100,916,523...100,953,388 		JBrowse link
homologous recombination pathway of double-strand break repair term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BLM BLM RecQ like helicase IEA
TAS		 KEGG
RGD		 PMID:20690856 hsa:03440, RGD:8662366 NCBI chr15:90,717,346...90,816,166
Ensembl chr15:90,717,346...90,816,166 		JBrowse link
G BRCA1 BRCA1 DNA repair associated TAS RGD PMID:16498454 PMID:24326623 RGD:1578504, RGD:8661237 NCBI chr17:43,044,295...43,170,327
Ensembl chr17:43,044,295...43,170,245 		JBrowse link
G BRCA2 BRCA2 DNA repair associated IEA
TAS		 KEGG
RGD		 PMID:20690856 hsa:03440, RGD:8662366 NCBI chr13:32,315,508...32,400,268
Ensembl chr13:32,315,086...32,400,268 		JBrowse link
G DNA2 DNA replication helicase/nuclease 2 TAS RGD PMID:20690856 RGD:8662366 NCBI chr10:68,414,064...68,472,521
Ensembl chr10:68,414,064...68,472,121 		JBrowse link
G EME1 essential meiotic structure-specific endonuclease 1 IEA KEGG hsa:03440 NCBI chr17:50,373,229...50,381,483
Ensembl chr17:50,373,220...50,381,483 		JBrowse link
G EXO1 exonuclease 1 TAS RGD PMID:20690856 RGD:8662366 NCBI chr 1:241,847,986...241,889,939
Ensembl chr 1:241,847,967...241,895,148 		JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease TAS
IEA		 KEGG
RGD		 PMID:16498454 PMID:20690856 hsa:03440, RGD:1578504, RGD:8662366 NCBI chr11:94,415,570...94,512,412
Ensembl chr11:94,415,570...94,493,885 		JBrowse link
G MUS81 MUS81 structure-specific endonuclease subunit IEA KEGG hsa:03440 NCBI chr11:65,859,674...65,867,653
Ensembl chr11:65,857,126...65,867,653 		JBrowse link
G NBN nibrin IEA
TAS		 KEGG
RGD		 PMID:20690856 hsa:03440, RGD:8662366 NCBI chr 8:89,933,331...89,984,667
Ensembl chr 8:89,924,515...90,003,228 		JBrowse link
G POLD1 DNA polymerase delta 1, catalytic subunit IEA KEGG hsa:03440 NCBI chr19:50,384,323...50,418,018
Ensembl chr19:50,384,204...50,418,018 		JBrowse link
G POLD2 DNA polymerase delta 2, accessory subunit IEA KEGG hsa:03440 NCBI chr 7:44,114,680...44,124,325
Ensembl chr 7:44,114,631...44,124,358 		JBrowse link
G POLD3 DNA polymerase delta 3, accessory subunit IEA KEGG hsa:03440 NCBI chr11:74,592,582...74,669,341
Ensembl chr11:74,493,851...74,669,117 		JBrowse link
G POLD4 DNA polymerase delta 4, accessory subunit IEA KEGG hsa:03440 NCBI chr11:67,350,765...67,353,596
Ensembl chr11:67,350,772...67,356,972 		JBrowse link
G RAD50 RAD50 double strand break repair protein TAS
IEA		 KEGG
RGD		 PMID:16498454 PMID:20690856 hsa:03440, RGD:1578504, RGD:8662366 NCBI chr 5:132,556,977...132,646,349
Ensembl chr 5:132,556,019...132,646,349 		JBrowse link
G RAD51 RAD51 recombinase IEA
TAS		 KEGG
RGD		 PMID:20690856 hsa:03440, RGD:8662366 NCBI chr15:40,694,733...40,732,340
Ensembl chr15:40,694,774...40,732,340 		JBrowse link
G RAD51B RAD51 paralog B TAS RGD PMID:20690856 RGD:8662366 NCBI chr14:67,819,779...68,683,096
Ensembl chr14:67,819,779...68,730,218 		JBrowse link
G RAD51C RAD51 paralog C IEA
TAS		 KEGG
RGD		 PMID:20690856 hsa:03440, RGD:8662366 NCBI chr17:58,692,573...58,735,611
Ensembl chr17:58,692,573...58,735,611 		JBrowse link
G RAD51D RAD51 paralog D TAS RGD PMID:20690856 RGD:8662366 NCBI chr17:35,092,221...35,119,860
Ensembl chr17:35,092,221...35,121,522 		JBrowse link
G RAD52 RAD52 homolog, DNA repair protein IEA KEGG hsa:03440 NCBI chr12:911,736...991,122
Ensembl chr12:911,736...990,053 		JBrowse link
G RAD54B RAD54 homolog B IEA
TAS		 KEGG
RGD		 PMID:20690856 hsa:03440, RGD:8662366 NCBI chr 8:94,371,960...94,475,115
Ensembl chr 8:94,371,960...94,475,115 		JBrowse link
G RAD54L RAD54 like IEA KEGG hsa:03440 NCBI chr 1:46,247,688...46,278,473
Ensembl chr 1:46,246,461...46,278,480 		JBrowse link
G RBBP8 RB binding protein 8, endonuclease TAS RGD PMID:24326623 RGD:8661237 NCBI chr18:22,914,139...23,026,486
Ensembl chr18:22,798,261...23,026,488 		JBrowse link
G RPA1 replication protein A1 IEA KEGG hsa:03440 NCBI chr17:1,830,005...1,900,082
Ensembl chr17:1,829,702...1,900,082 		JBrowse link
G RPA2 replication protein A2 IEA KEGG hsa:03440 NCBI chr 1:27,891,524...27,914,797
Ensembl chr 1:27,891,524...27,914,746 		JBrowse link
G RPA3 replication protein A3 IEA KEGG hsa:03440 NCBI chr 7:7,636,518...7,718,607
Ensembl chr 7:7,636,518...7,718,607 		JBrowse link
G RPA4 replication protein A4 IEA KEGG hsa:03440 NCBI chr  X:96,883,908...96,885,467
Ensembl chr  X:96,883,908...96,885,467 		JBrowse link
G SEM1 SEM1 26S proteasome subunit IEA KEGG hsa:03440 NCBI chr 7:96,481,626...96,709,846
Ensembl chr 7:96,481,626...96,709,880 		JBrowse link
G SSBP1 single stranded DNA binding protein 1 IEA KEGG hsa:03440 NCBI chr 7:141,738,321...141,750,488
Ensembl chr 7:141,738,334...141,787,922 		JBrowse link
G TOP3A DNA topoisomerase III alpha IEA KEGG hsa:03440 NCBI chr17:18,271,428...18,314,994
Ensembl chr17:18,271,428...18,315,007 		JBrowse link
G TOP3B DNA topoisomerase III beta IEA KEGG hsa:03440 NCBI chr22:21,957,025...21,982,787
Ensembl chr22:21,957,025...21,982,813 		JBrowse link
G XRCC2 X-ray repair cross complementing 2 IEA
TAS		 KEGG
RGD		 PMID:20690856 hsa:03440, RGD:8662366 NCBI chr 7:152,644,776...152,676,141
Ensembl chr 7:152,644,776...152,676,193 		JBrowse link
G XRCC3 X-ray repair cross complementing 3 IEA
TAS		 KEGG
RGD		 PMID:20690856 hsa:03440, RGD:8662366 NCBI chr14:103,697,617...103,715,451
Ensembl chr14:103,697,609...103,715,504 		JBrowse link
INO80 family mediated chromatin remodeling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTB actin beta TAS RGD PMID:21502417 RGD:9495926 NCBI chr 7:5,527,148...5,530,601
Ensembl chr 7:5,526,409...5,563,902 		JBrowse link
G ACTL6A actin like 6A TAS RGD PMID:21502417 RGD:9495926 NCBI chr 3:179,562,926...179,588,407
Ensembl chr 3:179,562,886...179,588,407 		JBrowse link
G ACTR5 actin related protein 5 TAS RGD PMID:21502417 RGD:9495926 NCBI chr20:38,748,460...38,772,520
Ensembl chr20:38,748,460...38,772,520 		JBrowse link
G ACTR6 actin related protein 6 TAS RGD PMID:21502417 RGD:9495926 NCBI chr12:100,200,815...100,224,424
Ensembl chr12:100,199,122...100,241,865 		JBrowse link
G ACTR8 actin related protein 8 TAS RGD PMID:21502417 RGD:9495926 NCBI chr 3:53,858,992...53,882,152
Ensembl chr 3:53,867,066...53,882,152 		JBrowse link
G BRD8 bromodomain containing 8 TAS RGD PMID:21502417 RGD:9495926 NCBI chr 5:138,139,770...138,178,630
Ensembl chr 5:138,139,770...138,178,953 		JBrowse link
G DMAP1 DNA methyltransferase 1 associated protein 1 TAS RGD PMID:21502417 RGD:9495926 NCBI chr 1:44,213,471...44,220,673
Ensembl chr 1:44,213,455...44,220,681 		JBrowse link
G EP400 E1A binding protein p400 TAS RGD PMID:21502417 RGD:9495926 NCBI chr12:131,949,942...132,080,460
Ensembl chr12:131,949,942...132,080,460 		JBrowse link
G EPC1 enhancer of polycomb homolog 1 TAS RGD PMID:21502417 RGD:9495926 NCBI chr10:32,267,751...32,378,769
Ensembl chr10:32,267,751...32,378,798 		JBrowse link
G EPC2 enhancer of polycomb homolog 2 TAS RGD PMID:21502417 RGD:9495926 NCBI chr 2:148,644,751...148,787,569
Ensembl chr 2:148,644,440...148,787,569 		JBrowse link
G ING3 inhibitor of growth family member 3 TAS RGD PMID:21502417 RGD:9495926 NCBI chr 7:120,950,777...120,977,216
Ensembl chr 7:120,950,763...120,977,216 		JBrowse link
G INO80 INO80 complex ATPase subunit TAS RGD PMID:21502417 RGD:9495926 NCBI chr15:40,978,880...41,116,280
Ensembl chr15:40,978,880...41,116,280 		JBrowse link
G INO80B INO80 complex subunit B TAS RGD PMID:21502417 RGD:9495926 NCBI chr 2:74,455,087...74,457,944
Ensembl chr 2:74,455,087...74,457,944 		JBrowse link
G INO80C INO80 complex subunit C TAS RGD PMID:21502417 RGD:9495926 NCBI chr18:35,468,333...35,497,960
Ensembl chr18:35,452,230...35,497,979 		JBrowse link
G INO80D INO80 complex subunit D TAS RGD PMID:21502417 RGD:9495926 NCBI chr 2:205,993,721...206,086,174
Ensembl chr 2:205,993,721...206,086,303 		JBrowse link
G INO80E INO80 complex subunit E TAS RGD PMID:21502417 RGD:9495926 NCBI chr16:29,996,241...30,005,791
Ensembl chr16:29,995,715...30,005,793 		JBrowse link
G KAT5 lysine acetyltransferase 5 TAS RGD PMID:21502417 RGD:9495926 NCBI chr11:65,712,018...65,719,604
Ensembl chr11:65,711,996...65,719,604 		JBrowse link
G MCRS1 microspherule protein 1 TAS RGD PMID:21502417 RGD:9495926 NCBI chr12:49,558,299...49,568,142
Ensembl chr12:49,556,544...49,568,145 		JBrowse link
G MEAF6 MYST/Esa1 associated factor 6 TAS RGD PMID:21502417 RGD:9495926 NCBI chr 1:37,489,993...37,514,766
Ensembl chr 1:37,489,993...37,514,766 		JBrowse link
G MORF4L1 mortality factor 4 like 1 TAS RGD PMID:21502417 RGD:9495926 NCBI chr15:78,872,890...78,898,139
Ensembl chr15:78,810,487...78,898,139 		JBrowse link
G MORF4L2 mortality factor 4 like 2 TAS RGD PMID:21502417 RGD:9495926 NCBI chr  X:103,675,498...103,688,047
Ensembl chr  X:103,675,496...103,688,158 		JBrowse link
G MRGBP MRG domain binding protein TAS RGD PMID:21502417 RGD:9495926 NCBI chr20:62,796,473...62,801,729
Ensembl chr20:62,796,473...62,801,729 		JBrowse link
G NFRKB nuclear factor related to kappaB binding protein TAS RGD PMID:21502417 RGD:9495926 NCBI chr11:129,863,636...129,895,578
Ensembl chr11:129,863,636...129,895,590 		JBrowse link
G RUVBL1 RuvB like AAA ATPase 1 TAS RGD PMID:21502417 RGD:9495926 NCBI chr 3:128,064,785...128,153,914
Ensembl chr 3:128,064,778...128,153,914 		JBrowse link
G RUVBL2 RuvB like AAA ATPase 2 TAS RGD PMID:21502417 RGD:9495926 NCBI chr19:48,993,448...49,015,995
Ensembl chr19:48,993,562...49,015,970 		JBrowse link
G SRCAP Snf2 related CREBBP activator protein TAS RGD PMID:21502417 RGD:9495926 NCBI chr16:30,699,171...30,741,409
Ensembl chr16:30,698,209...30,741,409 		JBrowse link
G TFPT TCF3 fusion partner TAS RGD PMID:21502417 RGD:9495926 NCBI chr19:54,107,020...54,115,657
Ensembl chr19:54,107,020...54,115,657 		JBrowse link
G TRRAP transformation/transcription domain associated protein TAS RGD PMID:21502417 RGD:9495926 NCBI chr 7:98,878,532...99,013,241
Ensembl chr 7:98,877,933...99,050,831 		JBrowse link
G UCHL5 ubiquitin C-terminal hydrolase L5 TAS RGD PMID:21502417 RGD:9495926 NCBI chr 1:193,012,254...193,060,076
Ensembl chr 1:193,012,250...193,060,080 		JBrowse link
G VPS72 vacuolar protein sorting 72 homolog TAS RGD PMID:21502417 RGD:9495926 NCBI chr 1:151,176,304...151,190,197
Ensembl chr 1:151,176,304...151,195,321 		JBrowse link
G YEATS4 YEATS domain containing 4 TAS RGD PMID:21502417 RGD:9495926 NCBI chr12:69,359,743...69,427,072
Ensembl chr12:69,359,710...69,390,870 		JBrowse link
G YY1 YY1 transcription factor TAS RGD PMID:21502417 RGD:9495926 NCBI chr14:100,239,144...100,282,788
Ensembl chr14:100,238,298...100,282,788 		JBrowse link
G ZNHIT1 zinc finger HIT-type containing 1 TAS RGD PMID:21502417 RGD:9495926 NCBI chr 7:101,218,165...101,224,190
Ensembl chr 7:101,218,165...101,224,190 		JBrowse link
ISWI family mediated chromatin remodeling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAZ1A bromodomain adjacent to zinc finger domain 1A TAS RGD PMID:21358755 RGD:9495920 NCBI chr14:34,752,731...34,875,360
Ensembl chr14:34,752,731...34,875,647 		JBrowse link
G BAZ1B bromodomain adjacent to zinc finger domain 1B TAS RGD PMID:21358755 RGD:9495920 NCBI chr 7:73,440,406...73,522,293
Ensembl chr 7:73,440,406...73,522,293 		JBrowse link
G BPTF bromodomain PHD finger transcription factor TAS RGD PMID:21358755 RGD:9495920 NCBI chr17:67,825,503...67,984,378
Ensembl chr17:67,825,503...67,984,378 		JBrowse link
G CHRAC1 chromatin accessibility complex subunit 1 TAS RGD PMID:21358755 RGD:9495920 NCBI chr 8:140,511,322...140,517,154
Ensembl chr 8:140,511,311...140,517,154 		JBrowse link
G POLE3 DNA polymerase epsilon 3, accessory subunit TAS RGD PMID:21358755 RGD:9495920 NCBI chr 9:113,407,235...113,410,749
Ensembl chr 9:113,407,235...113,410,675 		JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor TAS RGD PMID:21358755 RGD:9495920 NCBI chr 1:32,651,208...32,686,211
Ensembl chr 1:32,651,142...32,686,211 		JBrowse link
G RBBP7 RB binding protein 7, chromatin remodeling factor TAS RGD PMID:21358755 RGD:9495920 NCBI chr  X:16,844,341...16,870,362
Ensembl chr  X:16,839,283...16,870,362 		JBrowse link
G SMARCA1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 TAS RGD PMID:21358755 RGD:9495920 NCBI chr  X:129,446,506...129,523,490
Ensembl chr  X:129,446,501...129,523,500 		JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 TAS RGD PMID:21358755 RGD:9495920 NCBI chr 4:143,513,702...143,557,486
Ensembl chr 4:143,513,702...143,557,486 		JBrowse link
mismatch repair pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EXO1 exonuclease 1 TAS
IEA		 KEGG
RGD		 PMID:18157157 hsa:03430, RGD:2306716 NCBI chr 1:241,847,986...241,889,939
Ensembl chr 1:241,847,967...241,895,148 		JBrowse link
G HMGB1 high mobility group box 1 TAS RGD PMID:18157157 RGD:2306716 NCBI chr13:30,456,704...30,617,597
Ensembl chr13:30,456,704...30,617,597 		JBrowse link
G LIG1 DNA ligase 1 TAS
IEA		 KEGG
RGD		 PMID:18157157 hsa:03430, RGD:2306716 NCBI chr19:48,115,445...48,170,344
Ensembl chr19:48,115,445...48,170,603 		JBrowse link
G MLH1 mutL homolog 1 TAS
IEA		 KEGG
RGD		 PMID:18157157 hsa:03430, RGD:2306716 NCBI chr 3:36,993,466...37,050,846
Ensembl chr 3:36,993,226...37,050,896 		JBrowse link
G MLH3 mutL homolog 3 TAS
IEA		 KEGG
RGD		 PMID:18157157 hsa:03430, RGD:2306716 NCBI chr14:75,013,775...75,051,467
Ensembl chr14:75,013,769...75,051,532 		JBrowse link
G MSH2 mutS homolog 2 TAS
IEA		 KEGG
RGD		 PMID:18157157 hsa:03430, RGD:2306716 NCBI chr 2:47,403,067...47,709,830
Ensembl chr 2:47,403,067...47,663,146 		JBrowse link
G MSH3 mutS homolog 3 TAS
IEA		 KEGG
RGD		 PMID:18157157 hsa:03430, RGD:2306716 NCBI chr 5:80,654,652...80,876,815
Ensembl chr 5:80,654,652...80,876,815 		JBrowse link
G MSH6 mutS homolog 6 TAS
IEA		 KEGG
RGD		 PMID:18157157 hsa:03430, RGD:2306716 NCBI chr 2:47,783,145...47,810,101
Ensembl chr 2:47,695,530...47,810,063 		JBrowse link
G PCNA proliferating cell nuclear antigen TAS
IEA		 KEGG
RGD		 PMID:18157157 hsa:03430, RGD:2306716 NCBI chr20:5,114,953...5,126,622
Ensembl chr20:5,114,953...5,126,626 		JBrowse link
G PMS1 PMS1 homolog 1, mismatch repair system component TAS RGD PMID:18157157 RGD:2306716 NCBI chr 2:189,784,450...189,877,629
Ensembl chr 2:189,784,085...189,877,629 		JBrowse link
G PMS2 PMS1 homolog 2, mismatch repair system component TAS
IEA		 KEGG
RGD		 PMID:18157157 hsa:03430, RGD:2306716 NCBI chr 7:5,970,925...6,009,106
Ensembl chr 7:5,970,925...6,009,130 		JBrowse link
G POLD1 DNA polymerase delta 1, catalytic subunit TAS
IEA		 KEGG
RGD		 PMID:18157157 hsa:03430, RGD:2306716 NCBI chr19:50,384,323...50,418,018
Ensembl chr19:50,384,204...50,418,018 		JBrowse link
G POLD2 DNA polymerase delta 2, accessory subunit TAS
IEA		 KEGG
RGD		 PMID:18157157 hsa:03430, RGD:2306716 NCBI chr 7:44,114,680...44,124,325
Ensembl chr 7:44,114,631...44,124,358 		JBrowse link
G POLD3 DNA polymerase delta 3, accessory subunit TAS
IEA		 KEGG
RGD		 PMID:18157157 hsa:03430, RGD:2306716 NCBI chr11:74,592,582...74,669,341
Ensembl chr11:74,493,851...74,669,117 		JBrowse link
G POLD4 DNA polymerase delta 4, accessory subunit TAS
IEA		 KEGG
RGD		 PMID:18157157 hsa:03430, RGD:2306716 NCBI chr11:67,350,765...67,353,596
Ensembl chr11:67,350,772...67,356,972 		JBrowse link
G RFC1 replication factor C subunit 1 TAS
IEA		 KEGG
RGD		 PMID:18157157 hsa:03430, RGD:2306716 NCBI chr 4:39,287,456...39,366,362
Ensembl chr 4:39,287,456...39,366,375 		JBrowse link
G RFC2 replication factor C subunit 2 TAS
IEA		 KEGG
RGD		 PMID:18157157 hsa:03430, RGD:2306716 NCBI chr 7:74,231,502...74,254,399
Ensembl chr 7:74,231,499...74,254,458 		JBrowse link
G RFC3 replication factor C subunit 3 TAS
IEA		 KEGG
RGD		 PMID:18157157 hsa:03430, RGD:2306716 NCBI chr13:33,818,149...33,977,377
Ensembl chr13:33,818,069...33,966,558 		JBrowse link
G RFC4 replication factor C subunit 4 TAS
IEA		 KEGG
RGD		 PMID:18157157 hsa:03430, RGD:2306716 NCBI chr 3:186,789,900...186,806,482
Ensembl chr 3:186,789,880...186,807,058 		JBrowse link
G RFC5 replication factor C subunit 5 TAS
IEA		 KEGG
RGD		 PMID:18157157 hsa:03430, RGD:2306716 NCBI chr12:118,016,703...118,041,448
Ensembl chr12:118,013,588...118,033,130 		JBrowse link
G RPA1 replication protein A1 TAS
IEA		 KEGG
RGD		 PMID:18157157 hsa:03430, RGD:2306716 NCBI chr17:1,830,005...1,900,082
Ensembl chr17:1,829,702...1,900,082 		JBrowse link
G RPA2 replication protein A2 TAS
IEA		 KEGG
RGD		 PMID:18157157 hsa:03430, RGD:2306716 NCBI chr 1:27,891,524...27,914,797
Ensembl chr 1:27,891,524...27,914,746 		JBrowse link
G RPA3 replication protein A3 TAS
IEA		 KEGG
RGD		 PMID:18157157 hsa:03430, RGD:2306716 NCBI chr 7:7,636,518...7,718,607
Ensembl chr 7:7,636,518...7,718,607 		JBrowse link
G RPA4 replication protein A4 TAS
IEA		 KEGG
RGD		 PMID:18157157 hsa:03430, RGD:2306716 NCBI chr  X:96,883,908...96,885,467
Ensembl chr  X:96,883,908...96,885,467 		JBrowse link
G SSBP1 single stranded DNA binding protein 1 IEA KEGG hsa:03430 NCBI chr 7:141,738,321...141,750,488
Ensembl chr 7:141,738,334...141,787,922 		JBrowse link
non-homologous end joining pathway of double-strand break repair term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APLF aprataxin and PNKP like factor TAS RGD PMID:20192759 RGD:8662352 NCBI chr 2:68,467,585...68,580,162
Ensembl chr 2:68,467,572...68,655,862 		JBrowse link
G APTX aprataxin TAS RGD PMID:20192759 RGD:8662352 NCBI chr 9:32,972,616...33,025,120
Ensembl chr 9:32,886,601...33,025,130 		JBrowse link
G DCLRE1C DNA cross-link repair 1C IEA
TAS		 KEGG
RGD		 PMID:20192759 hsa:03450, RGD:8662352 NCBI chr10:14,897,359...14,954,432
Ensembl chr10:14,897,359...14,954,432 		JBrowse link
G DNTT DNA nucleotidylexotransferase IEA
TAS		 KEGG
RGD		 PMID:20192759 hsa:03450, RGD:8662352 NCBI chr10:96,304,434...96,338,564
Ensembl chr10:96,304,409...96,338,564 		JBrowse link
G FEN1 flap structure-specific endonuclease 1 IEA KEGG hsa:03450 NCBI chr11:61,792,911...61,797,238
Ensembl chr11:61,792,911...61,797,238 		JBrowse link
G LIG4 DNA ligase 4 IEA
TAS		 KEGG
RGD		 PMID:20192759 hsa:03450, RGD:8662352 NCBI chr13:108,207,442...108,218,349
Ensembl chr13:108,207,439...108,218,368 		JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease IEA KEGG hsa:03450 NCBI chr11:94,415,570...94,512,412
Ensembl chr11:94,415,570...94,493,885 		JBrowse link
G NHEJ1 non-homologous end joining factor 1 IEA
TAS		 KEGG
RGD		 PMID:20192759 hsa:03450, RGD:8662352 NCBI chr 2:219,069,357...219,160,815
Ensembl chr 2:219,069,355...219,160,869 		JBrowse link
G PNKP polynucleotide kinase 3'-phosphatase TAS RGD PMID:20192759 RGD:8662352 NCBI chr19:49,861,204...49,867,576
Ensembl chr19:49,859,882...49,878,351 		JBrowse link
G POLL DNA polymerase lambda IEA
TAS		 KEGG
RGD		 PMID:20192759 hsa:03450, RGD:8662352 NCBI chr10:101,578,882...101,588,270
Ensembl chr10:101,578,882...101,588,270 		JBrowse link
G POLM DNA polymerase mu IEA
TAS		 KEGG
RGD		 PMID:20192759 hsa:03450, RGD:8662352 NCBI chr 7:44,072,062...44,082,530
Ensembl chr 7:44,072,062...44,082,530 		JBrowse link
G PRKDC protein kinase, DNA-activated, catalytic subunit IEA
TAS		 KEGG
RGD		 PMID:20192759 hsa:03450, RGD:8662352 NCBI chr 8:47,773,111...47,960,136
Ensembl chr 8:47,773,111...47,960,178 		JBrowse link
G RAD50 RAD50 double strand break repair protein IEA KEGG hsa:03450 NCBI chr 5:132,556,977...132,646,349
Ensembl chr 5:132,556,019...132,646,349 		JBrowse link
G RBBP8 RB binding protein 8, endonuclease IMP RGD PMID:19633668 RGD:401940172 NCBI chr18:22,914,139...23,026,486
Ensembl chr18:22,798,261...23,026,488 		JBrowse link
G RIF1 replication timing regulatory factor 1 TAS RGD PMID:24326623 RGD:8661237 NCBI chr 2:151,409,902...151,534,435
Ensembl chr 2:151,409,883...151,508,013 		JBrowse link
G TP53BP1 tumor protein p53 binding protein 1 TAS RGD PMID:24326623 RGD:8661237 NCBI chr15:43,403,061...43,510,640
Ensembl chr15:43,403,061...43,510,728 		JBrowse link
G XRCC4 X-ray repair cross complementing 4 IEA
TAS		 KEGG
RGD		 PMID:20192759 hsa:03450, RGD:8662352 NCBI chr 5:83,077,547...83,374,473
Ensembl chr 5:83,077,498...83,353,787 		JBrowse link
G XRCC5 X-ray repair cross complementing 5 IEA
TAS		 KEGG
RGD		 PMID:20192759 hsa:03450, RGD:8662352 NCBI chr 2:216,109,348...216,206,293
Ensembl chr 2:216,107,464...216,206,303 		JBrowse link
G XRCC6 X-ray repair cross complementing 6 IEA
TAS		 KEGG
RGD		 PMID:20192759 hsa:03450, RGD:8662352 NCBI chr22:41,621,295...41,664,041
Ensembl chr22:41,621,163...41,664,048 		JBrowse link
nucleotide excision repair pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCNH cyclin H IEA KEGG hsa:03420 NCBI chr 5:87,311,471...87,412,930
Ensembl chr 5:87,318,416...87,413,029 		JBrowse link
G CDK7 cyclin dependent kinase 7 IEA KEGG hsa:03420 NCBI chr 5:69,234,795...69,277,430
Ensembl chr 5:69,234,795...69,277,430 		JBrowse link
G CETN2 centrin 2 IEA
TAS		 KEGG
RGD		 PMID:22572993 hsa:03420, RGD:7246920 NCBI chr  X:152,826,994...152,830,757
Ensembl chr  X:152,826,994...152,830,757 		JBrowse link
G CUL4A cullin 4A IEA KEGG hsa:03420 NCBI chr13:113,208,193...113,267,108
Ensembl chr13:113,208,193...113,267,108 		JBrowse link
G CUL4B cullin 4B IEA KEGG hsa:03420 NCBI chr  X:120,523,858...120,575,532
Ensembl chr  X:120,505,920...120,604,074 		JBrowse link
G DDB1 damage specific DNA binding protein 1 IEA
TAS		 KEGG
RGD		 PMID:22572993 hsa:03420, RGD:7246920 NCBI chr11:61,299,451...61,333,105
Ensembl chr11:61,299,451...61,342,596 		JBrowse link
G DDB2 damage specific DNA binding protein 2 IEA
TAS		 KEGG
RGD		 PMID:22572993 hsa:03420, RGD:7246920 NCBI chr11:47,214,454...47,239,217
Ensembl chr11:47,214,465...47,239,217 		JBrowse link
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit IEA
TAS		 KEGG
RGD		 PMID:19154342 hsa:03420, RGD:7246926 NCBI chr19:45,407,334...45,451,547
Ensembl chr19:45,407,334...45,478,828 		JBrowse link
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit IEA
EXP
TAS		 KEGG
SMPDB
RGD		 PMID:22572993 SMP:00478 hsa:03420, RGD:7246920 NCBI chr19:45,349,837...45,370,573
Ensembl chr19:45,349,837...45,370,918 		JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit IEA
TAS		 KEGG
RGD		 PMID:22572993 hsa:03420, RGD:7246920 NCBI chr 2:127,257,290...127,294,144
Ensembl chr 2:127,257,290...127,294,166 		JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit IEA
EXP
TAS		 KEGG
SMPDB
RGD		 PMID:19154342 SMP:00478 hsa:03420, RGD:7246926 NCBI chr16:13,920,154...13,952,348
Ensembl chr16:13,920,138...13,952,348 		JBrowse link
G ERCC5 ERCC excision repair 5, endonuclease IEA
EXP
TAS		 KEGG
SMPDB
RGD		 PMID:19154342 SMP:00478 hsa:03420, RGD:7246926 NCBI chr13:102,846,032...102,875,995
Ensembl chr13:102,845,831...102,875,995 		JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor IEA
TAS		 KEGG
RGD		 PMID:18166977 PMID:22824526 hsa:03420, RGD:7246923, RGD:7246919 NCBI chr10:49,434,881...49,539,538
Ensembl chr10:49,454,168...49,539,538 		JBrowse link
G ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit IEA
TAS		 KEGG
RGD		 PMID:18166977 PMID:22824526 hsa:03420, RGD:7246923, RGD:7246919 NCBI chr 5:60,866,454...60,945,070
Ensembl chr 5:60,866,454...60,945,073 		JBrowse link
G GTF2H1 general transcription factor IIH subunit 1 IEA
TAS		 KEGG
RGD		 PMID:22572993 hsa:03420, RGD:7246920 NCBI chr11:18,322,567...18,367,045
Ensembl chr11:18,322,295...18,367,045 		JBrowse link
G GTF2H2 general transcription factor IIH subunit 2 IEA
TAS		 KEGG
RGD		 PMID:21763452 hsa:03420, RGD:7246922 NCBI chr 5:71,035,347...71,067,676
Ensembl chr 5:71,035,016...71,067,689 		JBrowse link
G GTF2H2C GTF2H2 family member C IEA KEGG hsa:03420 NCBI chr 5:69,560,191...69,595,221
Ensembl chr 5:69,560,191...69,595,221
Ensembl chr 5:69,560,191...69,595,221 		JBrowse link
G GTF2H2C_2 GTF2H2 family member C, copy 2 IEA KEGG hsa:03420
G GTF2H3 general transcription factor IIH subunit 3 IEA KEGG hsa:03420 NCBI chr12:123,633,829...123,662,604
Ensembl chr12:123,633,739...123,662,604 		JBrowse link
G GTF2H4 general transcription factor IIH subunit 4 IEA KEGG hsa:03420 NCBI chr 6:30,908,207...30,914,106
Ensembl chr 6:30,908,207...30,914,106 		JBrowse link
G GTF2H5 general transcription factor IIH subunit 5 IEA KEGG hsa:03420 NCBI chr 6:158,168,350...158,199,344
Ensembl chr 6:158,168,350...158,199,344 		JBrowse link
G HMGN1 high mobility group nucleosome binding domain 1 TAS RGD PMID:22824526 RGD:7246919 NCBI chr21:39,342,315...39,349,088
Ensembl chr21:39,342,315...39,349,647 		JBrowse link
G LIG1 DNA ligase 1 IEA
EXP
TAS		 SMPDB
KEGG
RGD		 PMID: PMID:21601536 SMP:00478 hsa:03420, RGD:1358139, RGD:7246935 NCBI chr19:48,115,445...48,170,344
Ensembl chr19:48,115,445...48,170,603 		JBrowse link
G LIG3 DNA ligase 3 TAS RGD PMID:21601536 RGD:7246935 NCBI chr17:34,980,512...35,010,872
Ensembl chr17:34,980,512...35,009,743 		JBrowse link
G MNAT1 MNAT1 component of CDK activating kinase IEA KEGG hsa:03420 NCBI chr14:60,734,761...60,969,965
Ensembl chr14:60,734,742...60,969,965 		JBrowse link
G PCNA proliferating cell nuclear antigen IEA
EXP
TAS		 KEGG
SMPDB
RGD		 PMID:23545418 PMID:17512402 SMP:00478 hsa:03420, RGD:7246932, RGD:7246931 NCBI chr20:5,114,953...5,126,622
Ensembl chr20:5,114,953...5,126,626 		JBrowse link
G POLD1 DNA polymerase delta 1, catalytic subunit IEA
TAS		 KEGG
RGD		 PMID: PMID:21601536 hsa:03420, RGD:1358139, RGD:7246935 NCBI chr19:50,384,323...50,418,018
Ensembl chr19:50,384,204...50,418,018 		JBrowse link
G POLD2 DNA polymerase delta 2, accessory subunit IEA
TAS		 KEGG
RGD		 PMID:21601536 hsa:03420, RGD:7246935 NCBI chr 7:44,114,680...44,124,325
Ensembl chr 7:44,114,631...44,124,358 		JBrowse link
G POLD3 DNA polymerase delta 3, accessory subunit IEA
TAS		 KEGG
RGD		 PMID:21601536 hsa:03420, RGD:7246935 NCBI chr11:74,592,582...74,669,341
Ensembl chr11:74,493,851...74,669,117 		JBrowse link
G POLD4 DNA polymerase delta 4, accessory subunit IEA
TAS		 KEGG
RGD		 PMID:21601536 hsa:03420, RGD:7246935 NCBI chr11:67,350,765...67,353,596
Ensembl chr11:67,350,772...67,356,972 		JBrowse link
G POLE DNA polymerase epsilon, catalytic subunit IEA
EXP
TAS		 KEGG
SMPDB
RGD		 PMID:21601536 PMID:12806123 SMP:00478 hsa:03420, RGD:7246935, RGD:7246936 NCBI chr12:132,623,762...132,687,342
Ensembl chr12:132,623,753...132,687,376 		JBrowse link
G POLE2 DNA polymerase epsilon 2, accessory subunit IEA
TAS		 KEGG
RGD		 PMID:12806123 hsa:03420, RGD:7246936 NCBI chr14:49,643,555...49,688,214
Ensembl chr14:49,643,555...49,688,422 		JBrowse link
G POLE3 DNA polymerase epsilon 3, accessory subunit IEA
TAS		 KEGG
RGD		 PMID:12806123 hsa:03420, RGD:7246936 NCBI chr 9:113,407,235...113,410,749
Ensembl chr 9:113,407,235...113,410,675 		JBrowse link
G POLE4 DNA polymerase epsilon 4, accessory subunit IEA
TAS		 KEGG
RGD		 PMID:12806123 hsa:03420, RGD:7246936 NCBI chr 2:74,958,643...74,970,128
Ensembl chr 2:74,958,643...74,970,128 		JBrowse link
G POLK DNA polymerase kappa TAS RGD PMID:21601536 RGD:7246935 NCBI chr 5:75,510,774...75,609,991
Ensembl chr 5:75,511,845...75,609,991 		JBrowse link
G POLR1A RNA polymerase I subunit A EXP SMPDB SMP:00478 NCBI chr 2:86,020,216...86,105,886
Ensembl chr 2:86,020,216...86,106,155 		JBrowse link
G RAD23A RAD23 homolog A, nucleotide excision repair protein IEA
EXP		 KEGG
SMPDB		 SMP:00478 hsa:03420 NCBI chr19:12,945,862...12,953,642
Ensembl chr19:12,945,855...12,953,642 		JBrowse link
G RAD23B RAD23 homolog B, nucleotide excision repair protein IEA
TAS		 KEGG
RGD		 PMID:22572993 hsa:03420, RGD:7246920 NCBI chr 9:107,283,279...107,332,194
Ensembl chr 9:107,283,137...107,332,192 		JBrowse link
G RBX1 ring-box 1 IEA KEGG hsa:03420 NCBI chr22:40,951,378...40,973,309
Ensembl chr22:40,951,347...40,973,309 		JBrowse link
G RFC1 replication factor C subunit 1 IEA
EXP
TAS		 KEGG
SMPDB
RGD		 PMID:23545418 SMP:00478 hsa:03420, RGD:7246932 NCBI chr 4:39,287,456...39,366,362
Ensembl chr 4:39,287,456...39,366,375 		JBrowse link
G RFC2 replication factor C subunit 2 IEA
TAS		 KEGG
RGD		 PMID:23545418 hsa:03420, RGD:7246932 NCBI chr 7:74,231,502...74,254,399
Ensembl chr 7:74,231,499...74,254,458 		JBrowse link
G RFC3 replication factor C subunit 3 IEA
TAS		 KEGG
RGD		 PMID:23545418 hsa:03420, RGD:7246932 NCBI chr13:33,818,149...33,977,377
Ensembl chr13:33,818,069...33,966,558 		JBrowse link
G RFC4 replication factor C subunit 4 IEA
TAS		 KEGG
RGD		 PMID:23545418 hsa:03420, RGD:7246932 NCBI chr 3:186,789,900...186,806,482
Ensembl chr 3:186,789,880...186,807,058 		JBrowse link
G RFC5 replication factor C subunit 5 IEA
TAS		 KEGG
RGD		 PMID:23545418 hsa:03420, RGD:7246932 NCBI chr12:118,016,703...118,041,448
Ensembl chr12:118,013,588...118,033,130 		JBrowse link
G RPA1 replication protein A1 IEA
TAS		 KEGG
RGD		 PMID:19154342 hsa:03420, RGD:7246926 NCBI chr17:1,830,005...1,900,082
Ensembl chr17:1,829,702...1,900,082 		JBrowse link
G RPA2 replication protein A2 IEA
TAS		 KEGG
RGD		 PMID:19154342 hsa:03420, RGD:7246926 NCBI chr 1:27,891,524...27,914,797
Ensembl chr 1:27,891,524...27,914,746 		JBrowse link
G RPA3 replication protein A3 IEA
TAS		 KEGG
RGD		 PMID:19154342 hsa:03420, RGD:7246926 NCBI chr 7:7,636,518...7,718,607
Ensembl chr 7:7,636,518...7,718,607 		JBrowse link
G RPA4 replication protein A4 IEA
TAS		 KEGG
RGD		 PMID:19154342 hsa:03420, RGD:7246926 NCBI chr  X:96,883,908...96,885,467
Ensembl chr  X:96,883,908...96,885,467 		JBrowse link
G TENT4A terminal nucleotidyltransferase 4A EXP SMPDB SMP:00478 NCBI chr 5:6,713,432...6,757,044
Ensembl chr 5:6,713,432...6,757,044 		JBrowse link
G XAB2 XPA binding protein 2 TAS RGD PMID:22824526 RGD:7246919 NCBI chr19:7,619,525...7,629,545
Ensembl chr19:7,619,525...7,629,545 		JBrowse link
G XPA XPA, DNA damage recognition and repair factor IEA
EXP
TAS		 KEGG
SMPDB
RGD		 PMID:19154342 SMP:00478 hsa:03420, RGD:7246926 NCBI chr 9:97,654,398...97,697,340
Ensembl chr 9:97,674,909...97,697,340 		JBrowse link
G XPC XPC complex subunit, DNA damage recognition and repair factor IEA
TAS		 KEGG
RGD		 PMID:21763452 PMID:22572993 hsa:03420, RGD:7246922, RGD:7246920 NCBI chr 3:14,145,147...14,178,601
Ensembl chr 3:14,145,147...14,178,621 		JBrowse link
G XRCC1 X-ray repair cross complementing 1 TAS RGD PMID:21601536 RGD:7246935 NCBI chr19:43,543,311...43,575,527
Ensembl chr19:43,543,311...43,580,473 		JBrowse link
SWI/SNF family mediated chromatin remodeling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTB actin beta TAS RGD PMID:21358755 RGD:9495920 NCBI chr 7:5,527,148...5,530,601
Ensembl chr 7:5,526,409...5,563,902 		JBrowse link
G ACTL6A actin like 6A TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 3:179,562,926...179,588,407
Ensembl chr 3:179,562,886...179,588,407 		JBrowse link
G ACTL6B actin like 6B TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 7:100,643,097...100,656,448
Ensembl chr 7:100,643,097...100,656,448 		JBrowse link
G ARID1A AT-rich interaction domain 1A TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 1:26,696,015...26,782,104
Ensembl chr 1:26,693,236...26,782,104 		JBrowse link
G ARID1B AT-rich interaction domain 1B TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 6:156,776,026...157,210,779
Ensembl chr 6:156,776,020...157,210,779 		JBrowse link
G ARID2 AT-rich interaction domain 2 TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr12:45,729,706...45,908,037
Ensembl chr12:45,729,706...45,908,040 		JBrowse link
G BRD7 bromodomain containing 7 TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr16:50,315,957...50,368,988
Ensembl chr16:50,313,487...50,368,988 		JBrowse link
G BRD9 bromodomain containing 9 TAS RGD PMID:21358755 RGD:9495920 NCBI chr 5:863,741...892,801
Ensembl chr 5:850,291...892,801 		JBrowse link
G DPF1 double PHD fingers 1 TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr19:38,211,006...38,229,695
Ensembl chr19:38,211,006...38,229,714 		JBrowse link
G DPF2 double PHD fingers 2 TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr11:65,333,852...65,354,262
Ensembl chr11:65,333,843...65,354,262 		JBrowse link
G DPF3 double PHD fingers 3 TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr14:72,609,034...72,894,101
Ensembl chr14:72,609,034...72,894,101 		JBrowse link
G PBRM1 polybromo 1 TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 3:52,545,367...52,685,913
Ensembl chr 3:52,545,352...52,685,917 		JBrowse link
G PHF10 PHD finger protein 10 TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 6:169,703,902...169,724,500
Ensembl chr 6:169,703,902...169,725,566 		JBrowse link
G SMARCA2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 9:2,015,347...2,193,624
Ensembl chr 9:1,980,290...2,193,624 		JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr19:10,961,030...11,062,273
Ensembl chr19:10,960,932...11,079,426 		JBrowse link
G SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr22:23,786,966...23,838,009
Ensembl chr22:23,786,931...23,838,009 		JBrowse link
G SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 3:47,585,269...47,781,893
Ensembl chr 3:47,585,269...47,782,106 		JBrowse link
G SMARCC2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2 TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr12:56,162,359...56,189,483
Ensembl chr12:56,162,359...56,189,567 		JBrowse link
G SMARCD1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr12:50,085,342...50,100,707
Ensembl chr12:50,085,200...50,100,707 		JBrowse link
G SMARCD2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr17:63,832,081...63,842,685
Ensembl chr17:63,832,081...63,843,065 		JBrowse link
G SMARCD3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 7:151,238,780...151,277,149
Ensembl chr 7:151,238,764...151,277,896 		JBrowse link
G SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 TAS RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr17:40,624,962...40,647,818
Ensembl chr17:40,624,962...40,648,654 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 5958
    regulatory pathway 3604
      pathway pertinent to DNA replication and repair, cell cycle, maintenance of genomic integrity, RNA and protein biosynthesis 1651
        DNA repair pathway 374
          altered DNA repair pathway + 14
          chromatin modification/remodeling pathway + 259
          double-strand DNA repair pathway + 48
          single-strand DNA repair pathway + 83
Path 2
Term Annotations click to browse term
  pathway 5958
    regulatory pathway 3604
      pathway pertinent to DNA replication and repair, cell cycle, maintenance of genomic integrity, RNA and protein biosynthesis 1651
        DNA damage response pathway 396
          DNA repair pathway 374
            altered DNA repair pathway + 14
            chromatin modification/remodeling pathway + 259
            double-strand DNA repair pathway + 48
            single-strand DNA repair pathway + 83
paths to the root