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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (https://rgd.mcw.edu/rgdweb/contact/contactus.html).
Term:long term potentiation
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Accession:PW:0000060 term browser browse the term
Definition:Long-term potentiation (LTP) is a strengthening of the synapse that can last from hours to days and months. It is thought to underlie information storage and constitute the cellular basis of learning and memory. LTP engages numerous cascades of events on either side of the synapse and is accompanied by changes in gene expression.
Synonyms:related_synonym: LTP;   Long-term potentiation;   long-term synaptic potentiation


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long term potentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adcy1 adenylate cyclase 1 IEA KEGG rno:04720 NCBI chr14:86,125,119...86,234,459
Ensembl chr14:81,911,099...82,028,969 		JBrowse link
G Adcy8 adenylate cyclase 8 IEA KEGG rno:04720 NCBI chr 7:98,306,434...98,555,687
Ensembl chr 7:96,417,324...96,665,911 		JBrowse link
G Agt angiotensinogen IMP RGD PMID:11282364 RGD:1582105 NCBI chr19:69,426,540...69,447,017
Ensembl chr19:52,529,185...52,540,977 		JBrowse link
G Atf4 activating transcription factor 4 IEA KEGG rno:04720 NCBI chr 7:113,684,681...113,686,739
Ensembl chr 7:111,804,183...111,806,446 		JBrowse link
G Braf B-Raf proto-oncogene, serine/threonine kinase IEA KEGG rno:04720 NCBI chr 4:69,329,772...69,476,931
Ensembl chr 4:68,384,649...68,510,463 		JBrowse link
G Cacna1c calcium voltage-gated channel subunit alpha1 C IEA KEGG rno:04720 NCBI chr 4:153,431,169...154,051,932
Ensembl chr 4:151,764,138...152,379,648 		JBrowse link
G Calm1 calmodulin 1 IEA KEGG rno:04720 NCBI chr 6:125,217,191...125,227,855
Ensembl chr 6:119,487,621...119,498,227 		JBrowse link
G Calm2 calmodulin 2 IEA KEGG rno:04720 NCBI chr 6:12,845,170...12,857,830
Ensembl chr 6:7,091,567...7,104,287
Ensembl chr15:7,091,567...7,104,287 		JBrowse link
G Calm3 calmodulin 3 IEA KEGG rno:04720 NCBI chr 1:86,718,761...86,725,869
Ensembl chr 1:77,589,230...77,592,207 		JBrowse link
G Calml3 calmodulin-like 3 IEA KEGG rno:04720 NCBI chr17:71,329,438...71,333,068
Ensembl chr17:66,419,882...66,423,175 		JBrowse link
G Calml5 calmodulin-like 5 IEA KEGG rno:04720 NCBI chr17:71,304,326...71,305,245 JBrowse link
G Camk2a calcium/calmodulin-dependent protein kinase II alpha IEA KEGG rno:04720 NCBI chr18:56,648,779...56,711,505
Ensembl chr18:54,378,784...54,438,994 		JBrowse link
G Camk2b calcium/calmodulin-dependent protein kinase II beta IEA KEGG rno:04720 NCBI chr14:85,059,166...85,148,121
Ensembl chr14:80,845,238...80,933,994 		JBrowse link
G Camk2d calcium/calmodulin-dependent protein kinase II delta IEA KEGG rno:04720 NCBI chr 2:217,698,324...217,961,898
Ensembl chr 2:215,024,004...215,286,178 		JBrowse link
G Camk2g calcium/calmodulin-dependent protein kinase II gamma IEA KEGG rno:04720 NCBI chr15:3,553,238...3,612,310
Ensembl chr15:3,504,085...3,563,050 		JBrowse link
G Camk4 calcium/calmodulin-dependent protein kinase IV IEA KEGG rno:04720 NCBI chr18:24,857,152...25,076,054
Ensembl chr18:24,585,269...24,802,487 		JBrowse link
G Chp1 calcineurin-like EF-hand protein 1 IEA KEGG rno:04720 NCBI chr 3:126,989,800...127,025,071
Ensembl chr 3:106,536,004...106,571,251 		JBrowse link
G Chp1l1 calcineurin-like EF-hand protein 1 like 1 IEA KEGG rno:04720 NCBI chr 5:73,364,780...73,367,229
Ensembl chr 5:68,571,232...68,571,819 		JBrowse link
G Chp2 calcineurin-like EF hand protein 2 IEA KEGG rno:04720 NCBI chr 1:186,189,090...186,203,663
Ensembl chr 1:176,757,876...176,772,139 		JBrowse link
G Crebbp CREB binding protein IEA KEGG rno:04720 NCBI chr10:11,842,307...11,968,266
Ensembl chr10:11,335,953...11,461,888 		JBrowse link
G Egr1 early growth response 1 IMP RGD PMID:16930406 RGD:1626499 NCBI chr18:26,737,078...26,740,877
Ensembl chr18:26,462,981...26,466,766 		JBrowse link
G Ep300 E1A binding protein p300 IEA KEGG rno:04720 NCBI chr 7:114,987,857...115,058,652
Ensembl chr 7:113,106,247...113,136,088
Ensembl chr 7:113,106,247...113,136,088 		JBrowse link
G Gnaq G protein subunit alpha q IEA KEGG rno:04720 NCBI chr 1:222,852,453...223,098,754
Ensembl chr 1:213,424,465...213,667,672 		JBrowse link
G Gria1 glutamate ionotropic receptor AMPA type subunit 1 IEA KEGG rno:04720 NCBI chr10:41,710,540...42,030,105
Ensembl chr10:41,210,713...41,527,283 		JBrowse link
G Gria2 glutamate ionotropic receptor AMPA type subunit 2 IEA KEGG rno:04720 NCBI chr 2:168,247,490...168,367,616
Ensembl chr 2:165,947,521...166,069,510 		JBrowse link
G Grik1 glutamate ionotropic receptor kainate type subunit 1 ISO RGD PMID:10580501 RGD:1642498 NCBI chr11:40,655,974...41,056,966
Ensembl chr11:27,169,740...27,570,645 		JBrowse link
G Grin1 glutamate ionotropic receptor NMDA type subunit 1 IEA KEGG rno:04720 NCBI chr 3:28,501,836...28,528,754
Ensembl chr 3:8,103,680...8,130,603 		JBrowse link
G Grin2a glutamate ionotropic receptor NMDA type subunit 2A IMP
IEA		 KEGG
RGD		 PMID:17655746 PMID:16904707 rno:04720, RGD:1642204, RGD:1642207 NCBI chr10:6,136,458...6,560,003
Ensembl chr10:5,631,369...6,044,637 		JBrowse link
G Grin2b glutamate ionotropic receptor NMDA type subunit 2B IMP
IEA		 KEGG
RGD		 PMID:17655746 PMID:20164351 PMID:16904707 rno:04720, RGD:1642204, RGD:2325882, RGD:1642207 NCBI chr 4:170,297,811...170,775,420
Ensembl chr 4:168,599,546...169,042,279 		JBrowse link
G Grin2c glutamate ionotropic receptor NMDA type subunit 2C IEA KEGG rno:04720 NCBI chr10:100,987,410...101,006,064
Ensembl chr10:100,488,431...100,506,427 		JBrowse link
G Grin2d glutamate ionotropic receptor NMDA type subunit 2D IEA KEGG rno:04720 NCBI chr 1:105,443,317...105,483,400
Ensembl chr 1:96,308,365...96,344,793 		JBrowse link
G Grm1 glutamate metabotropic receptor 1 IEA KEGG rno:04720 NCBI chr 1:6,878,542...7,273,447
Ensembl chr 1:5,058,292...5,453,170 		JBrowse link
G Grm5 glutamate metabotropic receptor 5 IEA KEGG rno:04720 NCBI chr 1:150,722,711...151,297,585
Ensembl chr 1:141,312,368...141,882,274 		JBrowse link
G Hras HRas proto-oncogene, GTPase IEA KEGG rno:04720 NCBI chr 1:205,712,625...205,729,406
Ensembl chr 1:196,296,263...196,300,615 		JBrowse link
G Itpr1 inositol 1,4,5-trisphosphate receptor, type 1 IEA KEGG rno:04720 NCBI chr 4:142,743,401...143,066,505
Ensembl chr 4:141,187,418...141,510,491 		JBrowse link
G Itpr2 inositol 1,4,5-trisphosphate receptor, type 2 IEA KEGG rno:04720 NCBI chr 4:180,759,325...181,165,361
Ensembl chr 4:179,027,281...179,404,164 		JBrowse link
G Itpr3 inositol 1,4,5-trisphosphate receptor, type 3 IEA KEGG rno:04720 NCBI chr20:5,138,553...5,204,189
Ensembl chr20:5,136,441...5,202,337 		JBrowse link
G Kcnd1 potassium voltage-gated channel subfamily D member 1 TAS RGD PMID:16141270 RGD:1581430 NCBI chr  X:14,661,688...14,678,745
Ensembl chr  X:14,662,357...14,677,233 		JBrowse link
G Kcnd2 potassium voltage-gated channel subfamily D member 2 TAS RGD PMID:16141270 RGD:1581430 NCBI chr 4:50,741,595...51,243,540
Ensembl chr 4:49,776,246...50,277,728 		JBrowse link
G Kcnd3 potassium voltage-gated channel subfamily D member 3 TAS RGD PMID:16141270 RGD:1581430 NCBI chr 2:195,626,316...195,843,690
Ensembl chr 2:192,937,950...193,155,345 		JBrowse link
G Kras KRAS proto-oncogene, GTPase IEA KEGG rno:04720 NCBI chr 4:179,916,255...179,949,613 JBrowse link
G Lnpep leucyl and cystinyl aminopeptidase IMP RGD PMID:11282364 RGD:1582105 NCBI chr 1:58,258,642...58,355,532
Ensembl chr 1:58,258,642...58,354,544 		JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 IEA KEGG rno:04720 NCBI chr 8:73,578,747...73,650,184
Ensembl chr 8:64,683,449...64,755,147 		JBrowse link
G Map2k2 mitogen activated protein kinase kinase 2 IEA KEGG rno:04720 NCBI chr 7:9,241,449...9,264,216
Ensembl chr 7:8,580,905...8,610,243 		JBrowse link
G Mapk1 mitogen activated protein kinase 1 IEA KEGG rno:04720 NCBI chr11:97,462,025...97,529,193
Ensembl chr11:83,957,813...84,023,616 		JBrowse link
G Mapk3 mitogen activated protein kinase 3 IEA KEGG rno:04720 NCBI chr 1:190,797,189...190,803,411
Ensembl chr 1:181,366,637...181,372,863 		JBrowse link
G Nras NRAS proto-oncogene, GTPase IEA KEGG rno:04720 NCBI chr 2:193,271,399...193,282,023
Ensembl chr 2:190,582,918...190,591,626 		JBrowse link
G Plcb1 phospholipase C beta 1 IEA KEGG rno:04720 NCBI chr 3:142,512,765...143,224,042
Ensembl chr 3:122,060,031...122,772,869 		JBrowse link
G Plcb2 phospholipase C, beta 2 IEA KEGG rno:04720 NCBI chr 3:126,134,925...126,158,303
Ensembl chr 3:105,684,815...105,704,302 		JBrowse link
G Plcb3 phospholipase C beta 3 IEA KEGG rno:04720 NCBI chr 1:213,572,499...213,589,585
Ensembl chr 1:204,144,956...204,160,228 		JBrowse link
G Plcb4 phospholipase C, beta 4 IEA KEGG rno:04720 NCBI chr 3:143,405,721...143,775,129
Ensembl chr 3:122,953,196...123,322,392 		JBrowse link
G Ppp1ca protein phosphatase 1 catalytic subunit alpha IEA KEGG rno:04720 NCBI chr 1:210,914,576...210,918,193
Ensembl chr 1:201,485,085...201,497,327 		JBrowse link
G Ppp1cb protein phosphatase 1 catalytic subunit beta IEA KEGG rno:04720 NCBI chr 6:29,681,099...29,712,835
Ensembl chr 6:23,960,998...23,992,824 		JBrowse link
G Ppp1cc protein phosphatase 1 catalytic subunit gamma IEA KEGG rno:04720 NCBI chr12:40,043,822...40,061,301
Ensembl chr12:34,383,072...34,400,553 		JBrowse link
G Ppp1r12a protein phosphatase 1, regulatory subunit 12A IEA KEGG rno:04720 NCBI chr 7:45,368,922...45,480,158
Ensembl chr 7:43,482,803...43,593,425 		JBrowse link
G Ppp1r1a protein phosphatase 1, regulatory (inhibitor) subunit 1A IEA KEGG rno:04720 NCBI chr 7:136,533,031...136,540,687
Ensembl chr 7:134,654,579...134,662,230 		JBrowse link
G Ppp3ca protein phosphatase 3 catalytic subunit alpha IEA KEGG rno:04720 NCBI chr 2:227,839,058...228,113,560
Ensembl chr 2:225,165,766...225,438,974 		JBrowse link
G Ppp3cb protein phosphatase 3 catalytic subunit beta IEA KEGG rno:04720 NCBI chr15:3,809,182...3,854,204
Ensembl chr15:3,760,030...3,804,981 		JBrowse link
G Ppp3cc protein phosphatase 3 catalytic subunit gamma IEA KEGG rno:04720 NCBI chr15:51,699,586...51,771,763
Ensembl chr15:45,290,373...45,361,832 		JBrowse link
G Ppp3r1 protein phosphatase 3, regulatory subunit B, alpha IEA KEGG rno:04720 NCBI chr14:95,758,333...95,808,015
Ensembl chr14:91,604,121...91,606,907 		JBrowse link
G Ppp3r2 protein phosphatase 3, regulatory subunit B, beta IEA KEGG rno:04720 NCBI chr 5:68,822,387...68,823,382
Ensembl chr 5:64,026,903...64,032,548 		JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha IEA KEGG rno:04720 NCBI chr19:41,059,843...41,083,189
Ensembl chr19:24,155,090...24,178,430 		JBrowse link
G Prkacb protein kinase cAMP-activated catalytic subunit beta IEA KEGG rno:04720 NCBI chr 2:238,297,140...238,389,317
Ensembl chr 2:235,636,885...235,726,198 		JBrowse link
G Prkca protein kinase C, alpha IEA KEGG rno:04720 NCBI chr10:93,388,991...93,787,617
Ensembl chr10:92,894,012...93,288,012 		JBrowse link
G Prkcb protein kinase C, beta IEA KEGG rno:04720 NCBI chr 1:186,263,397...186,594,743
Ensembl chr 1:176,832,226...177,163,536 		JBrowse link
G Prkcg protein kinase C, gamma IEA KEGG rno:04720 NCBI chr 1:74,748,272...74,777,611
Ensembl chr 1:65,832,855...65,859,384 		JBrowse link
G Prkx protein kinase cAMP-dependent X-linked catalytic subunit IEA KEGG rno:04720 NCBI chr  X:45,701,747...45,745,210
Ensembl chr  X:41,823,355...41,866,669 		JBrowse link
G Ptk2 protein tyrosine kinase 2 IMP RGD PMID:12764094 RGD:2292620 NCBI chr 7:107,015,730...107,220,865
Ensembl chr 7:105,126,728...105,331,783 		JBrowse link
G Raf1 Raf-1 proto-oncogene, serine/threonine kinase IEA KEGG rno:04720 NCBI chr 4:150,352,158...150,412,813
Ensembl chr 4:148,679,530...148,740,317 		JBrowse link
G Rap1a RAP1A, member of RAS oncogene family IEA KEGG rno:04720 NCBI chr 2:195,896,967...195,974,851
Ensembl chr 2:193,208,635...193,286,501 		JBrowse link
G Rap1b RAP1B, member of RAS oncogene family IEA KEGG rno:04720 NCBI chr 7:55,308,922...55,342,217
Ensembl chr 7:53,423,130...53,456,370 		JBrowse link
G Rapgef3 Rap guanine nucleotide exchange factor 3 IEA KEGG rno:04720 NCBI chr 7:130,754,883...130,777,303
Ensembl chr 7:128,875,773...128,898,521 		JBrowse link
G RGD1565588 similar to calcium binding protein P22 IEA KEGG rno:04720
G Rps6ka1 ribosomal protein S6 kinase A1 IEA KEGG rno:04720 NCBI chr 5:146,079,018...146,118,272
Ensembl chr 5:146,079,021...146,118,272 		JBrowse link
G Rps6ka2 ribosomal protein S6 kinase A2 IEA KEGG rno:04720 NCBI chr 1:55,178,988...55,454,271
Ensembl chr 1:52,631,736...52,906,739 		JBrowse link
G Rps6ka3 ribosomal protein S6 kinase A3 IEA KEGG rno:04720 NCBI chr  X:39,325,926...39,432,017
Ensembl chr  X:35,517,306...35,623,207 		JBrowse link
G Rps6ka6 ribosomal protein S6 kinase A6 IEA KEGG rno:04720 NCBI chr  X:76,353,316...76,454,502
Ensembl chr  X:76,353,760...76,454,484 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 6091
    signaling pathway 2635
      signaling pathway pertinent to the brain and nervous system 466
        neuron-to-neuron signaling pathways 282
          neuron-to-neuron signaling pathway via the chemical synapse 280
            excitatory synaptic transmission pathway 189
              long term potentiation 77
paths to the root