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Pathways
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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:energy metabolic pathway
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Accession:PW:0000033 term browser browse the term
Definition:Those metabolic reactions and pathways whose role is to release or provide energy.


show annotations for term's descendants           Sort by:
altered citric acid cycle pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FH fumarate hydratase ISO RGD PMID:17211469 RGD:6907135 NCBI chr 7:32,900,250...32,927,436
Ensembl chr 7:32,901,586...32,927,412 		JBrowse link
G SDHB succinate dehydrogenase complex iron sulfur subunit B ISO RGD PMID:21771581 RGD:6907134 NCBI chr 2:81,158,291...81,190,110
Ensembl chr 2:81,158,291...81,190,109 		JBrowse link
G SDHD succinate dehydrogenase complex subunit D ISO RGD PMID:21771581 RGD:6907134 NCBI chr 5:21,030,295...21,041,125 JBrowse link
citric acid cycle pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACO2 aconitase 2 ISO RGD
SMPDB		 PMID:9712727 RGD:2306877 SMP:00057 NCBI chr10:23,742,284...23,798,580
Ensembl chr10:23,742,333...23,798,498 		JBrowse link
G CS citrate synthase ISO SMPDB
RGD		 PMID:938457 PMID:9712727 RGD:2306828 RGD:2306877 SMP:00057 NCBI chr10:584,000...611,351
Ensembl chr10:584,904...611,436 		JBrowse link
G DLAT dihydrolipoamide S-acetyltransferase ISO SMPDB SMP:00057 NCBI chr 5:21,062,833...21,094,235
Ensembl chr 5:21,064,026...21,094,153 		JBrowse link
G DLD dihydrolipoamide dehydrogenase ISO SMPDB
RGD		 PMID:10672230 RGD:2306878 SMP:00057 NCBI chr18:12,703,340...12,734,408
Ensembl chr18:12,703,341...12,734,479 		JBrowse link
G DLST dihydrolipoamide S-succinyltransferase ISO SMPDB
RGD		 PMID:10672230 RGD:2306878 SMP:00057 NCBI chr 8:48,003,730...48,025,001
Ensembl chr 8:48,002,211...48,024,999 		JBrowse link
G FH fumarate hydratase ISO RGD
SMPDB		 PMID:938457 RGD:2306828 SMP:00057 NCBI chr 7:32,900,250...32,927,436
Ensembl chr 7:32,901,586...32,927,412 		JBrowse link
G IDH3A isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha ISO RGD
SMPDB		 PMID:938457 RGD:2306828 SMP:00057 NCBI chr 3:58,301,982...58,318,925
Ensembl chr 3:58,302,001...58,318,248 		JBrowse link
G IDH3B isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta ISO SMPDB
RGD		 PMID:938457 RGD:2306828 SMP:00057 NCBI chr24:18,556,437...18,561,399
Ensembl chr24:18,556,508...18,561,391 		JBrowse link
G IDH3G isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma ISO SMPDB
RGD		 PMID:938457 RGD:2306828 SMP:00057 NCBI chr  X:121,599,368...121,608,707
Ensembl chr  X:121,599,368...121,608,643 		JBrowse link
G MDH2 malate dehydrogenase 2 ISO RGD
SMPDB		 PMID:938457 RGD:2306828 SMP:00057 NCBI chr 6:7,389,266...7,405,311 JBrowse link
G MPC1 mitochondrial pyruvate carrier 1 ISO SMPDB SMP:00057 NCBI chr 1:54,379,195...54,395,697 JBrowse link
G OGDH oxoglutarate dehydrogenase ISO RGD
SMPDB		 PMID:9712727 PMID:10672230 RGD:2306877 RGD:2306878 SMP:00057
G PC pyruvate carboxylase ISO SMPDB SMP:00057 NCBI chr18:50,406,994...50,507,677
Ensembl chr18:50,412,272...50,507,669 		JBrowse link
G PDHA1 pyruvate dehydrogenase E1 subunit alpha 1 ISO SMPDB SMP:00057 NCBI chr  X:15,338,364...15,354,011
Ensembl chr  X:15,338,202...15,387,458 		JBrowse link
G PDHB pyruvate dehydrogenase E1 subunit beta ISO SMPDB SMP:00057 NCBI chr20:32,185,420...32,191,592 JBrowse link
G SDHA succinate dehydrogenase complex flavoprotein subunit A ISO SMPDB
RGD		 PMID:16143825 RGD:2306881 SMP:00057 NCBI chr34:11,935,684...11,965,094
Ensembl chr34:11,935,941...11,965,189 		JBrowse link
G SDHB succinate dehydrogenase complex iron sulfur subunit B ISO SMPDB
RGD		 PMID:16143825 RGD:2306881 SMP:00057 NCBI chr 2:81,158,291...81,190,110
Ensembl chr 2:81,158,291...81,190,109 		JBrowse link
G SDHC succinate dehydrogenase complex subunit C ISO SMPDB
RGD		 PMID:16143825 RGD:2306881 SMP:00057 NCBI chr38:21,162,850...21,200,429
Ensembl chr38:21,162,421...21,200,333 		JBrowse link
G SDHD succinate dehydrogenase complex subunit D ISO SMPDB
RGD		 PMID:16143825 RGD:2306881 SMP:00057 NCBI chr 5:21,030,295...21,041,125 JBrowse link
G SUCLA2 succinate-CoA ligase ADP-forming subunit beta ISO RGD PMID:17403370 RGD:2306915 NCBI chr22:3,440,908...3,478,683
Ensembl chr22:3,440,923...3,478,683 		JBrowse link
G SUCLG1 succinate-CoA ligase GDP/ADP-forming subunit alpha ISO RGD
SMPDB		 PMID:17403370 RGD:2306915 SMP:00057 NCBI chr17:40,392,969...40,424,875
Ensembl chr17:40,393,178...40,424,711 		JBrowse link
G SUCLG2 succinate-CoA ligase GDP-forming subunit beta ISO SMPDB
RGD		 PMID:17403370 RGD:2306915 SMP:00057 NCBI chr20:23,915,149...24,167,740
Ensembl chr20:23,895,802...24,182,869 		JBrowse link
creatine metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CKM creatine kinase, M-type ISO RGD PMID:12069495 RGD:1359082 NCBI chr 1:110,210,158...110,218,937
Ensembl chr 1:110,210,152...110,343,383 		JBrowse link
G GAMT guanidinoacetate N-methyltransferase ISO RGD PMID:12069495 RGD:1359082 NCBI chr20:57,440,698...57,442,588 JBrowse link
G GATM glycine amidinotransferase ISO RGD PMID:8021264 RGD:70746 NCBI chr30:11,724,446...11,742,214
Ensembl chr30:11,723,519...11,742,214 		JBrowse link
G SLC6A8 solute carrier family 6 member 8 ISO RGD PMID:12069495 RGD:1359082 NCBI chr  X:121,505,117...121,511,674
Ensembl chr  X:121,505,141...121,510,347 		JBrowse link
electron transport chain pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP5F1A ATP synthase F1 subunit alpha ISO SMPDB SMP:00355 NCBI chr 7:45,118,188...45,127,048
Ensembl chr 7:45,117,657...45,127,048 		JBrowse link
G ATP5F1B ATP synthase F1 subunit beta ISO SMPDB SMP:00355 NCBI chr10:870,405...876,937
Ensembl chr10:870,392...909,161 		JBrowse link
G ATP5F1C ATP synthase F1 subunit gamma ISO SMPDB SMP:00355 NCBI chr 2:28,306,857...28,325,149
Ensembl chr 2:28,306,857...28,325,116 		JBrowse link
G ATP5F1D ATP synthase F1 subunit delta ISO SMPDB SMP:00355 NCBI chr20:57,547,575...57,550,110
Ensembl chr20:57,547,371...57,549,722 		JBrowse link
G ATP5F1E ATP synthase F1 subunit epsilon ISO SMPDB SMP:00355 NCBI chr24:43,770,646...43,772,278
Ensembl chr24:43,772,120...43,772,680 		JBrowse link
G CYCS cytochrome c, somatic ISO SMPDB SMP:00355 NCBI chr14:38,579,446...38,581,983
Ensembl chr14:38,579,446...38,581,983 		JBrowse link
G GAPDH glyceraldehyde-3-phosphate dehydrogenase ISO SMPDB SMP:00355 NCBI chr27:38,468,889...38,472,653
Ensembl chr27:38,468,889...38,472,385 		JBrowse link
G GPD1 glycerol-3-phosphate dehydrogenase 1 ISO SMPDB SMP:00355 NCBI chr27:4,614,878...4,622,013
Ensembl chr27:4,614,864...4,621,922 		JBrowse link
G GPD2 glycerol-3-phosphate dehydrogenase 2 ISO SMPDB SMP:00355 NCBI chr36:2,678,749...2,780,173
Ensembl chr36:2,681,188...2,777,535 		JBrowse link
G LOC100688210 ATP synthase F(0) complex subunit C2, mitochondrial-like ISO SMPDB SMP:00355 NCBI chr14:7,516,917...7,517,538 JBrowse link
G LOC100688796 ATP synthase F(0) complex subunit B1, mitochondrial ISO SMPDB SMP:00355 NCBI chr17:63,940,486...63,954,982
Ensembl chr 6:40,613,415...40,625,979
Ensembl chr 6:40,613,415...40,625,979 		JBrowse link
G MT-ATP6 mitochondrially encoded ATP synthase membrane subunit 6 ISO SMPDB SMP:00355 NCBI chr MT:7,964...8,644
Ensembl chr MT:7,964...8,644 		JBrowse link
G MT-CO1 mitochondrially encoded cytochrome c oxidase I ISO SMPDB SMP:00355 NCBI chr MT:5,349...6,893
Ensembl chr MT:5,349...6,893 		JBrowse link
G NDUFA1 NADH:ubiquinone oxidoreductase subunit A1 ISO SMPDB SMP:00355 NCBI chr  X:91,886,062...91,889,841 JBrowse link
G SDHA succinate dehydrogenase complex flavoprotein subunit A ISO SMPDB
RGD		 PMID:16143825 RGD:2306881 SMP:00355 NCBI chr34:11,935,684...11,965,094
Ensembl chr34:11,935,941...11,965,189 		JBrowse link
G SDHB succinate dehydrogenase complex iron sulfur subunit B ISO SMPDB
RGD		 PMID:16143825 RGD:2306881 SMP:00355 NCBI chr 2:81,158,291...81,190,110
Ensembl chr 2:81,158,291...81,190,109 		JBrowse link
G SDHC succinate dehydrogenase complex subunit C ISO SMPDB
RGD		 PMID:16143825 RGD:2306881 SMP:00355 NCBI chr38:21,162,850...21,200,429
Ensembl chr38:21,162,421...21,200,333 		JBrowse link
G SDHD succinate dehydrogenase complex subunit D ISO SMPDB
RGD		 PMID:15572694 PMID:16143825 RGD:1580035 RGD:2306881 SMP:00355 NCBI chr 5:21,030,295...21,041,125 JBrowse link
G SLC25A4 solute carrier family 25 member 4 ISO SMPDB SMP:00355 NCBI chr16:45,454,660...45,458,606
Ensembl chr16:45,411,810...45,542,162 		JBrowse link
G SLC37A4 solute carrier family 37 member 4 ISO SMPDB SMP:00355 NCBI chr 5:14,823,485...14,830,007
Ensembl chr 5:14,823,499...14,830,004 		JBrowse link
G UQCRC1 ubiquinol-cytochrome c reductase core protein 1 ISO SMPDB SMP:00355 NCBI chr20:40,507,767...40,515,854
Ensembl chr20:40,506,907...40,520,110 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 4052
    classic metabolic pathway 1010
      energy metabolic pathway 43
        altered energy metabolic pathway + 3
        carbon fixation pathway 0
        citric acid cycle pathway + 22
        creatine metabolic pathway 4
        methane metabolic pathway + 0
        nitrogen metabolic pathway 0
        octane oxidation pathway 0
        oxidative phosphorylation pathway + 21
        photosynthesis pathway 0
        reductive carboxylate cycle - CO2 fixation pathway 0
        sulfur metabolic pathway + 0
paths to the root