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Pathways
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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:energy metabolic pathway
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Accession:PW:0000033 term browser browse the term
Definition:Those metabolic reactions and pathways whose role is to release or provide energy.

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altered citric acid cycle pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fh fumarate hydratase ISO RGD PMID:17211469 RGD:6907135 NCBI chrNW_004955406:10,535,801...10,558,649
Ensembl chrNW_004955406:10,535,323...10,561,627 		JBrowse link
G Sdhb succinate dehydrogenase complex iron sulfur subunit B ISO RGD PMID:21771581 RGD:6907134 NCBI chrNW_004955527:1,769,280...1,792,496
Ensembl chrNW_004955527:1,768,940...1,792,361 		JBrowse link
G Sdhd succinate dehydrogenase complex subunit D ISO RGD PMID:21771581 RGD:6907134 NCBI chrNW_004955412:13,768,501...13,778,944
Ensembl chrNW_004955412:13,768,501...13,778,932 		JBrowse link
citric acid cycle pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aco2 aconitase 2 ISO SMPDB
RGD		 PMID:9712727 RGD:2306877 SMP:00057 NCBI chrNW_004955413:27,027,341...27,065,227
Ensembl chrNW_004955413:27,027,341...27,065,227 		JBrowse link
G Cs citrate synthase ISO SMPDB
RGD		 PMID:938457 PMID:9712727 RGD:2306828 RGD:2306877 SMP:00057 NCBI chrNW_004955458:3,881,798...3,913,044
Ensembl chrNW_004955458:3,881,798...3,893,401 		JBrowse link
G Dlat dihydrolipoamide S-acetyltransferase ISO SMPDB SMP:00057 NCBI chrNW_004955412:13,718,091...13,746,220
Ensembl chrNW_004955412:13,718,067...13,744,239 		JBrowse link
G Dld dihydrolipoamide dehydrogenase ISO SMPDB
RGD		 PMID:10672230 RGD:2306878 SMP:00057 NCBI chrNW_004955410:12,212,981...12,238,561
Ensembl chrNW_004955410:12,212,963...12,238,561 		JBrowse link
G Dlst dihydrolipoamide S-succinyltransferase ISO SMPDB
RGD		 PMID:10672230 RGD:2306878 SMP:00057 NCBI chrNW_004955523:660,413...680,878
Ensembl chrNW_004955523:661,738...680,802 		JBrowse link
G Fh fumarate hydratase ISO RGD
SMPDB		 PMID:938457 RGD:2306828 SMP:00057 NCBI chrNW_004955406:10,535,801...10,558,649
Ensembl chrNW_004955406:10,535,323...10,561,627 		JBrowse link
G Idh3a isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha ISO SMPDB
RGD		 PMID:938457 RGD:2306828 SMP:00057 NCBI chrNW_004955450:685,905...703,593
Ensembl chrNW_004955450:685,905...703,586 		JBrowse link
G Idh3b isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta ISO RGD
SMPDB		 PMID:938457 RGD:2306828 SMP:00057 NCBI chrNW_004955415:13,642,804...13,649,023
Ensembl chrNW_004955415:13,643,168...13,649,463 		JBrowse link
G Idh3g isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma ISO RGD
SMPDB		 PMID:938457 RGD:2306828 SMP:00057 NCBI chrNW_004955580:500,712...507,512
Ensembl chrNW_004955580:500,825...507,608 		JBrowse link
G Mdh2 malate dehydrogenase 2 ISO RGD
SMPDB		 PMID:938457 RGD:2306828 SMP:00057 NCBI chrNW_004955456:14,819,406...14,833,547
Ensembl chrNW_004955456:14,819,406...14,837,142 		JBrowse link
G Mpc1 mitochondrial pyruvate carrier 1 ISO SMPDB SMP:00057 NCBI chrNW_004955439:15,515,966...15,531,618
Ensembl chrNW_004955439:15,516,090...15,531,116 		JBrowse link
G Ogdh oxoglutarate dehydrogenase ISO SMPDB
RGD		 PMID:9712727 PMID:10672230 RGD:2306877 RGD:2306878 SMP:00057 NCBI chrNW_004955456:7,416,343...7,484,889
Ensembl chrNW_004955456:7,415,589...7,485,515 		JBrowse link
G Pc pyruvate carboxylase ISO SMPDB SMP:00057 NCBI chrNW_004955422:18,421,100...18,536,591
Ensembl chrNW_004955422:18,420,596...18,536,436 		JBrowse link
G Pdha1 pyruvate dehydrogenase E1 subunit alpha 1 ISO SMPDB SMP:00057 NCBI chrNW_004955586:98,492...114,927
Ensembl chrNW_004955586:97,172...114,928 		JBrowse link
G Pdhb pyruvate dehydrogenase E1 subunit beta ISO SMPDB SMP:00057 NCBI chrNW_004955430:1,707,615...1,713,541
Ensembl chrNW_004955430:1,707,615...1,713,541 		JBrowse link
G Sdha succinate dehydrogenase complex flavoprotein subunit A ISO SMPDB
RGD		 PMID:16143825 RGD:2306881 SMP:00057 NCBI chrNW_004955504:36,939...66,507
Ensembl chrNW_004955504:36,911...70,494 		JBrowse link
G Sdhb succinate dehydrogenase complex iron sulfur subunit B ISO SMPDB
RGD		 PMID:16143825 RGD:2306881 SMP:00057 NCBI chrNW_004955527:1,769,280...1,792,496
Ensembl chrNW_004955527:1,768,940...1,792,361 		JBrowse link
G Sdhc succinate dehydrogenase complex subunit C ISO SMPDB
RGD		 PMID:16143825 RGD:2306881 SMP:00057 NCBI chrNW_004955468:13,050,359...13,083,932
Ensembl chrNW_004955468:13,049,848...13,083,156 		JBrowse link
G Sdhd succinate dehydrogenase complex subunit D ISO SMPDB
RGD		 PMID:16143825 RGD:2306881 SMP:00057 NCBI chrNW_004955412:13,768,501...13,778,944
Ensembl chrNW_004955412:13,768,501...13,778,932 		JBrowse link
G Sucla2 succinate-CoA ligase ADP-forming subunit beta ISO RGD PMID:17403370 RGD:2306915 NCBI chrNW_004955431:1,678,720...1,737,234
Ensembl chrNW_004955431:1,676,362...1,737,489 		JBrowse link
G Suclg1 succinate-CoA ligase GDP/ADP-forming subunit alpha ISO SMPDB
RGD		 PMID:17403370 RGD:2306915 SMP:00057 NCBI chrNW_004955424:2,810,557...2,838,827
Ensembl chrNW_004955424:2,810,557...2,842,036 		JBrowse link
G Suclg2 succinate-CoA ligase GDP-forming subunit beta ISO RGD
SMPDB		 PMID:17403370 RGD:2306915 SMP:00057 NCBI chrNW_004955421:20,089,471...20,350,334
Ensembl chrNW_004955421:20,089,237...20,350,843 		JBrowse link
creatine metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ckm creatine kinase, M-type ISO RGD PMID:12069495 RGD:1359082 NCBI chrNW_004955555:2,318,072...2,330,733
Ensembl chrNW_004955555:2,318,072...2,336,811 		JBrowse link
G Gamt guanidinoacetate N-methyltransferase ISO RGD PMID:12069495 RGD:1359082 NCBI chrNW_004955495:6,536,541...6,539,424
Ensembl chrNW_004955495:6,536,544...6,539,424 		JBrowse link
G Gatm glycine amidinotransferase ISO RGD PMID:8021264 RGD:70746 NCBI chrNW_004955409:8,068,524...8,084,603
Ensembl chrNW_004955409:8,068,476...8,084,603 		JBrowse link
G Slc6a8 solute carrier family 6 member 8 ISO RGD PMID:12069495 RGD:1359082 NCBI chrNW_004955580:419,696...426,727 JBrowse link
electron transport chain pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp5f1a ATP synthase F1 subunit alpha ISO SMPDB SMP:00355 NCBI chrNW_004955402:31,652,226...31,662,114
Ensembl chrNW_004955402:31,651,960...31,662,762 		JBrowse link
G Atp5f1b ATP synthase F1 subunit beta ISO SMPDB SMP:00355 NCBI chrNW_004955458:4,188,167...4,195,575
Ensembl chrNW_004955458:4,186,461...4,195,494 		JBrowse link
G Atp5f1c ATP synthase F1 subunit gamma ISO SMPDB SMP:00355 NCBI chrNW_004955421:24,234,473...24,253,640
Ensembl chrNW_004955421:24,234,413...24,253,640 		JBrowse link
G Atp5f1d ATP synthase F1 subunit delta ISO SMPDB SMP:00355 NCBI chrNW_004955495:6,664,394...6,666,693
Ensembl chrNW_004955495:6,664,394...6,666,693 		JBrowse link
G Atp5f1e ATP synthase F1 subunit epsilon ISO SMPDB SMP:00355 NCBI chrNW_004955445:563,642...567,865
Ensembl chrNW_004955445:563,315...567,865 		JBrowse link
G Atp5mc2 ATP synthase membrane subunit c locus 2 ISO SMPDB SMP:00355 NCBI chrNW_004955458:952,817...960,963
Ensembl chrNW_004955458:952,817...959,962 		JBrowse link
G Atp5pb ATP synthase peripheral stalk-membrane subunit b ISO SMPDB SMP:00355 NCBI chrNW_004955435:14,940,502...14,952,423
Ensembl chrNW_004955435:14,940,434...14,954,310 		JBrowse link
G Gapdh glyceraldehyde-3-phosphate dehydrogenase ISO SMPDB SMP:00355 NCBI chrNW_004955413:4,162,467...4,166,783
Ensembl chrNW_004955413:4,162,467...4,166,783 		JBrowse link
G Gpd1 glycerol-3-phosphate dehydrogenase 1 ISO SMPDB SMP:00355 NCBI chrNW_004955547:676,661...683,906
Ensembl chrNW_004955547:676,342...690,777 		JBrowse link
G Gpd2 glycerol-3-phosphate dehydrogenase 2 ISO SMPDB SMP:00355 NCBI chrNW_004955449:16,695,855...16,804,184
Ensembl chrNW_004955449:16,695,435...16,802,908 		JBrowse link
G LOC102005965 cytochrome b-c1 complex subunit 1, mitochondrial ISO SMPDB SMP:00355 NCBI chrNW_004955532:685,315...691,286
Ensembl chrNW_004955532:685,395...696,554 		JBrowse link
G LOC102023786 cytochrome c, somatic ISO SMPDB SMP:00355 NCBI chrNW_004955410:27,086,405...27,089,255
Ensembl chrNW_004955410:27,086,405...27,089,255 		JBrowse link
G Ndufa1 NADH:ubiquinone oxidoreductase subunit A1 ISO SMPDB SMP:00355 NCBI chrNW_004955534:152,291...154,183
Ensembl chrNW_004955534:152,300...154,183 		JBrowse link
G Sdha succinate dehydrogenase complex flavoprotein subunit A ISO SMPDB
RGD		 PMID:16143825 RGD:2306881 SMP:00355 NCBI chrNW_004955504:36,939...66,507
Ensembl chrNW_004955504:36,911...70,494 		JBrowse link
G Sdhb succinate dehydrogenase complex iron sulfur subunit B ISO SMPDB
RGD		 PMID:16143825 RGD:2306881 SMP:00355 NCBI chrNW_004955527:1,769,280...1,792,496
Ensembl chrNW_004955527:1,768,940...1,792,361 		JBrowse link
G Sdhc succinate dehydrogenase complex subunit C ISO SMPDB
RGD		 PMID:16143825 RGD:2306881 SMP:00355 NCBI chrNW_004955468:13,050,359...13,083,932
Ensembl chrNW_004955468:13,049,848...13,083,156 		JBrowse link
G Sdhd succinate dehydrogenase complex subunit D ISO RGD
SMPDB		 PMID:15572694 PMID:16143825 RGD:1580035 RGD:2306881 SMP:00355 NCBI chrNW_004955412:13,768,501...13,778,944
Ensembl chrNW_004955412:13,768,501...13,778,932 		JBrowse link
G Slc25a4 solute carrier family 25 member 4 ISO SMPDB SMP:00355 NCBI chrNW_004955403:23,878,329...23,882,322
Ensembl chrNW_004955403:23,878,329...23,882,322 		JBrowse link
G Slc37a4 solute carrier family 37 member 4 ISO SMPDB SMP:00355 NCBI chrNW_004955412:20,133,652...20,140,134
Ensembl chrNW_004955412:20,133,652...20,139,542 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 3930
    classic metabolic pathway 967
      energy metabolic pathway 41
        altered energy metabolic pathway + 3
        carbon fixation pathway 0
        citric acid cycle pathway + 22
        creatine metabolic pathway 4
        methane metabolic pathway + 0
        nitrogen metabolic pathway 0
        octane oxidation pathway 0
        oxidative phosphorylation pathway + 19
        photosynthesis pathway 0
        reductive carboxylate cycle - CO2 fixation pathway 0
        sulfur metabolic pathway + 0
paths to the root