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Pathways
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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:energy metabolic pathway
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Accession:PW:0000033 term browser browse the term
Definition:Those metabolic reactions and pathways whose role is to release or provide energy.


show annotations for term's descendants           Sort by:
altered citric acid cycle pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FH fumarate hydratase ISO RGD PMID:17211469 RGD:6907135 NCBI chr 1:217,059,847...217,081,795
Ensembl chr 1:222,041,142...222,064,212 		JBrowse link
G SDHB succinate dehydrogenase complex iron sulfur subunit B ISO RGD PMID:21771581 RGD:6907134 NCBI chr 1:15,962,383...15,998,056
Ensembl chr 1:17,018,542...17,054,509 		JBrowse link
citric acid cycle pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACO2 aconitase 2 ISO SMPDB
RGD		 PMID:9712727 RGD:2306877 SMP:00057 NCBI chr22:22,363,178...22,423,041
Ensembl chr22:40,450,276...40,510,200 		JBrowse link
G CS citrate synthase ISO RGD
SMPDB		 PMID:938457 PMID:9712727 RGD:2306828 RGD:2306877 SMP:00057 NCBI chr12:32,614,982...32,643,719
Ensembl chr12:32,867,225...32,895,854 		JBrowse link
G DLAT dihydrolipoamide S-acetyltransferase ISO SMPDB SMP:00057 NCBI chr11:106,910,857...106,950,851
Ensembl chr11:110,756,001...110,792,795 		JBrowse link
G DLD dihydrolipoamide dehydrogenase ISO SMPDB
RGD		 PMID:10672230 RGD:2306878 SMP:00057 NCBI chr 7:99,872,020...99,901,884
Ensembl chr 7:112,593,934...112,623,629 		JBrowse link
G DLST dihydrolipoamide S-succinyltransferase ISO SMPDB
RGD		 PMID:10672230 RGD:2306878 SMP:00057 NCBI chr14:55,433,358...55,455,876
Ensembl chr14:74,278,128...74,300,133 		JBrowse link
G FH fumarate hydratase ISO RGD
SMPDB		 PMID:938457 RGD:2306828 SMP:00057 NCBI chr 1:217,059,847...217,081,795
Ensembl chr 1:222,041,142...222,064,212 		JBrowse link
G IDH3A isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha ISO RGD
SMPDB		 PMID:938457 RGD:2306828 SMP:00057 NCBI chr15:57,078,588...57,099,934
Ensembl chr15:76,043,311...76,064,634 		JBrowse link
G IDH3B isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta ISO RGD
SMPDB		 PMID:938457 RGD:2306828 SMP:00057 NCBI chr20:2,766,598...2,772,571
Ensembl chr20:2,529,510...2,535,570 		JBrowse link
G IDH3G isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma ISO RGD
SMPDB		 PMID:938457 RGD:2306828 SMP:00057 NCBI chr  X:143,336,460...143,345,274
Ensembl chr  X:153,222,309...153,231,135 		JBrowse link
G MDH2 malate dehydrogenase 2 ISO SMPDB
RGD		 PMID:938457 RGD:2306828 SMP:00057 NCBI chr 7:67,953,759...67,973,270
Ensembl chr 7:82,497,800...82,516,526 		JBrowse link
G MPC1 mitochondrial pyruvate carrier 1 ISO SMPDB SMP:00057 NCBI chr 6:164,331,604...164,349,747 JBrowse link
G OGDH oxoglutarate dehydrogenase ISO RGD
SMPDB		 PMID:9712727 PMID:10672230 RGD:2306877 RGD:2306878 SMP:00057 NCBI chr 7:45,321,559...45,422,515
Ensembl chr 7:45,409,148...45,491,636 		JBrowse link
G PC pyruvate carboxylase ISO SMPDB SMP:00057 NCBI chr11:62,205,644...62,317,917
Ensembl chr11:65,527,662...65,551,396 		JBrowse link
G PDHA1 pyruvate dehydrogenase E1 subunit alpha 1 ISO SMPDB SMP:00057 NCBI chr  X:11,967,944...11,985,837
Ensembl chr  X:19,330,508...19,348,443 		JBrowse link
G PDHB pyruvate dehydrogenase E1 subunit beta ISO SMPDB SMP:00057 NCBI chr 3:58,359,753...58,366,094
Ensembl chr 3:59,776,618...59,782,411 		JBrowse link
G SDHB succinate dehydrogenase complex iron sulfur subunit B ISO SMPDB
RGD		 PMID:16143825 RGD:2306881 SMP:00057 NCBI chr 1:15,962,383...15,998,056
Ensembl chr 1:17,018,542...17,054,509 		JBrowse link
G SDHC succinate dehydrogenase complex subunit C ISO SMPDB
RGD		 PMID:16143825 RGD:2306881 SMP:00057 NCBI chr 1:136,724,663...136,773,038
Ensembl chr 1:140,635,685...140,682,736 		JBrowse link
G SUCLA2 succinate-CoA ligase ADP-forming subunit beta ISO RGD PMID:17403370 RGD:2306915 NCBI chr13:29,095,062...29,189,618
Ensembl chr13:47,797,472...47,856,138 		JBrowse link
G SUCLG1 succinate-CoA ligase GDP/ADP-forming subunit alpha ISO SMPDB
RGD		 PMID:17403370 RGD:2306915 SMP:00057 NCBI chr2A:84,476,814...84,512,920
Ensembl chr2A:86,035,723...86,066,622 		JBrowse link
G SUCLG2 succinate-CoA ligase GDP-forming subunit beta ISO RGD
SMPDB		 PMID:17403370 RGD:2306915 SMP:00057 NCBI chr 3:67,277,348...67,563,181
Ensembl chr 3:68,647,738...68,931,891 		JBrowse link
creatine metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CKM creatine kinase, M-type ISO RGD PMID:12069495 RGD:1359082 NCBI chr19:42,255,158...42,271,467
Ensembl chr19:50,854,556...50,870,366 		JBrowse link
G GAMT guanidinoacetate N-methyltransferase ISO RGD PMID:12069495 RGD:1359082 Ensembl chr19:1,371,312...1,375,461 JBrowse link
G GATM glycine amidinotransferase ISO RGD PMID:8021264 RGD:70746 NCBI chr15:24,309,045...24,326,673
Ensembl chr15:42,639,597...42,657,209 		JBrowse link
G SLC6A8 solute carrier family 6 member 8 ISO RGD PMID:12069495 RGD:1359082
electron transport chain pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP5F1A ATP synthase F1 subunit alpha ISO SMPDB SMP:00355 NCBI chr18:39,366,384...39,380,514
Ensembl chr18:42,904,136...42,923,326 		JBrowse link
G ATP5F1B ATP synthase F1 subunit beta ISO SMPDB SMP:00355 NCBI chr12:32,264,570...32,272,419
Ensembl chr12:32,519,749...32,527,753 		JBrowse link
G ATP5F1C ATP synthase F1 subunit gamma ISO SMPDB SMP:00355 NCBI chr10:7,820,874...7,840,581
Ensembl chr10:7,801,438...7,821,088 		JBrowse link
G ATP5F1D ATP synthase F1 subunit delta ISO SMPDB SMP:00355
G ATP5F1E ATP synthase F1 subunit epsilon ISO SMPDB SMP:00355 NCBI chr20:55,379,615...55,383,316
Ensembl chr20:56,740,739...56,744,431 		JBrowse link
G ATP5MC2 ATP synthase membrane subunit c locus 2 ISO SMPDB SMP:00355 NCBI chr12:35,078,290...35,089,480 JBrowse link
G ATP5PB ATP synthase peripheral stalk-membrane subunit b ISO SMPDB SMP:00355 NCBI chr 1:114,110,749...114,122,715
Ensembl chr 1:126,224,725...126,235,897 		JBrowse link
G GAPDH glyceraldehyde-3-phosphate dehydrogenase ISO SMPDB SMP:00355 NCBI chr12:6,665,218...6,669,170
Ensembl chr12:6,583,895...6,587,729 		JBrowse link
G GPD1 glycerol-3-phosphate dehydrogenase 1 ISO SMPDB SMP:00355 NCBI chr12:38,644,466...38,651,924
Ensembl chr12:39,541,550...39,549,040 		JBrowse link
G GPD2 glycerol-3-phosphate dehydrogenase 2 ISO SMPDB SMP:00355 NCBI chr2B:43,694,744...43,845,764
Ensembl chr2B:160,938,514...161,117,320 		JBrowse link
G LOC100977575 cytochrome b-c1 complex subunit 1, mitochondrial ISO SMPDB SMP:00355 NCBI chr 3:48,520,870...48,531,947
Ensembl chr 3:49,602,770...49,613,717 		JBrowse link
G LOC100986481 cytochrome c ISO SMPDB SMP:00355 NCBI chr 7:25,784,900...25,791,598
Ensembl chr 7:25,396,013...25,398,549 		JBrowse link
G NDUFA1 NADH:ubiquinone oxidoreductase subunit A1 ISO SMPDB SMP:00355 NCBI chr  X:108,935,315...108,940,237
Ensembl chr  X:119,330,105...119,334,963 		JBrowse link
G SDHB succinate dehydrogenase complex iron sulfur subunit B ISO SMPDB
RGD		 PMID:16143825 RGD:2306881 SMP:00355 NCBI chr 1:15,962,383...15,998,056
Ensembl chr 1:17,018,542...17,054,509 		JBrowse link
G SDHC succinate dehydrogenase complex subunit C ISO SMPDB
RGD		 PMID:16143825 RGD:2306881 SMP:00355 NCBI chr 1:136,724,663...136,773,038
Ensembl chr 1:140,635,685...140,682,736 		JBrowse link
G SLC25A4 solute carrier family 25 member 4 ISO SMPDB SMP:00355 NCBI chr 4:177,310,982...177,315,016
Ensembl chr 4:189,531,914...189,534,549 		JBrowse link
G SLC37A4 solute carrier family 37 member 4 ISO SMPDB SMP:00355 NCBI chr11:113,862,537...113,869,447
Ensembl chr11:117,792,700...117,799,269 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 4059
    classic metabolic pathway 1014
      energy metabolic pathway 39
        altered energy metabolic pathway + 2
        carbon fixation pathway 0
        citric acid cycle pathway + 20
        creatine metabolic pathway 4
        methane metabolic pathway + 0
        nitrogen metabolic pathway 0
        octane oxidation pathway 0
        oxidative phosphorylation pathway + 17
        photosynthesis pathway 0
        reductive carboxylate cycle - CO2 fixation pathway 0
        sulfur metabolic pathway + 0
paths to the root