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Pathways
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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:amino acid metabolic pathway
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Accession:PW:0000011 term browser browse the term
Definition:Those metabolic reactions involved in the synthesis, utilization and/or degradation of the primary or standard 20 amino acids found in proteins. Amino acids are described as non-essential or essential depending on whether humans can or can not synthesize them, respectively. Chemically, they are classified based on the polarity of their side chain or R group, as non-polar and hydrophobic and hydrophilic and charged or polar uncharged. Amino acid metabolic pathways are also listed with their KEGG entries.
Synonyms:related_synonym: cellular amino acid metabolic process

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alanine metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aars1 alanyl-tRNA synthetase 1 ISO SMPDB SMP:00055 NCBI chrNW_004955484:3,090,678...3,115,224
Ensembl chrNW_004955484:3,089,235...3,115,230 		JBrowse link
G Aars2 alanyl-tRNA synthetase 2, mitochondrial ISO SMPDB SMP:00055 NCBI chrNW_004955437:9,915,371...9,924,886
Ensembl chrNW_004955437:9,913,867...9,924,886 		JBrowse link
G Agxt alanine--glyoxylate and serine--pyruvate aminotransferase ISO SMPDB SMP:00055 NCBI chrNW_004955542:710,506...720,564
Ensembl chrNW_004955542:710,005...717,741 		JBrowse link
G Gpt glutamic--pyruvic transaminase ISO SMPDB SMP:00055 NCBI chrNW_004955454:3,127,997...3,132,459
Ensembl chrNW_004955454:3,127,997...3,132,459 		JBrowse link
G Pc pyruvate carboxylase ISO SMPDB SMP:00055 NCBI chrNW_004955422:18,421,100...18,536,591
Ensembl chrNW_004955422:18,420,596...18,536,436 		JBrowse link
arginine and proline metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh4a1 aldehyde dehydrogenase 4 family member A1 ISO SMPDB SMP:00020 NCBI chrNW_004955527:338,593...369,528
Ensembl chrNW_004955527:338,593...372,872 		JBrowse link
G Arg1 arginase 1 ISO SMPDB SMP:00020 NCBI chrNW_004955436:12,235,767...12,247,817
Ensembl chrNW_004955436:12,235,767...12,251,972 		JBrowse link
G Asl argininosuccinate lyase ISO SMPDB SMP:00020 NCBI chrNW_004955456:8,409,767...8,419,915
Ensembl chrNW_004955456:8,411,220...8,416,992 		JBrowse link
G Ass1 argininosuccinate synthase 1 ISO SMPDB SMP:00020 NCBI chrNW_004955513:443,372...485,190
Ensembl chrNW_004955513:445,462...485,190 		JBrowse link
G Ckb creatine kinase B ISO SMPDB SMP:00020 NCBI chrNW_004955538:2,379,868...2,380,771 JBrowse link
G Cps1 carbamoyl-phosphate synthase 1 ISO SMPDB SMP:00020 NCBI chrNW_004955457:4,848,116...4,961,384
Ensembl chrNW_004955457:4,844,152...4,961,246 		JBrowse link
G Dao D-amino acid oxidase ISO SMPDB SMP:00020 NCBI chrNW_004955455:10,095,597...10,127,244
Ensembl chrNW_004955455:10,095,300...10,127,666 		JBrowse link
G Eprs1 glutamyl-prolyl-tRNA synthetase 1 ISO SMPDB SMP:00020 NCBI chrNW_004955520:3,550,558...3,606,015
Ensembl chrNW_004955520:3,550,558...3,606,697 		JBrowse link
G Gamt guanidinoacetate N-methyltransferase ISO SMPDB SMP:00020 NCBI chrNW_004955495:6,536,541...6,539,424
Ensembl chrNW_004955495:6,536,544...6,539,424 		JBrowse link
G Gatm glycine amidinotransferase ISO SMPDB SMP:00020 NCBI chrNW_004955409:8,068,524...8,084,603
Ensembl chrNW_004955409:8,068,476...8,084,603 		JBrowse link
G Glud1 glutamate dehydrogenase 1 ISO SMPDB SMP:00020 NCBI chrNW_004955510:5,987,811...6,021,001 JBrowse link
G Got1 glutamic-oxaloacetic transaminase 1 ISO SMPDB SMP:00020 NCBI chrNW_004955507:5,346,937...5,370,072
Ensembl chrNW_004955507:5,346,838...5,370,072 		JBrowse link
G Nos1 nitric oxide synthase 1 ISO SMPDB SMP:00020 NCBI chrNW_004955455:13,797,557...13,978,402
Ensembl chrNW_004955455:13,797,545...13,972,566 		JBrowse link
G Oat ornithine aminotransferase ISO SMPDB SMP:00020 NCBI chrNW_004955477:2,430,146...2,450,135
Ensembl chrNW_004955477:2,429,776...2,450,624 		JBrowse link
G Otc ornithine transcarbamylase ISO SMPDB SMP:00020 NCBI chrNW_004955601:481,524...543,176
Ensembl chrNW_004955601:481,480...543,176 		JBrowse link
G P4ha3 prolyl 4-hydroxylase subunit alpha 3 ISO SMPDB SMP:00020 NCBI chrNW_004955414:17,344,512...17,376,564
Ensembl chrNW_004955414:17,344,509...17,376,564 		JBrowse link
G Pycr2 pyrroline-5-carboxylate reductase 2 ISO SMPDB SMP:00020 NCBI chrNW_004955489:138,600...143,112
Ensembl chrNW_004955489:138,600...143,112 		JBrowse link
G Rars2 arginyl-tRNA synthetase 2, mitochondrial ISO SMPDB SMP:00020 NCBI chrNW_004955411:14,470,479...14,527,895
Ensembl chrNW_004955411:14,470,479...14,527,895 		JBrowse link
G Slc25a15 solute carrier family 25 member 15 ISO SMPDB SMP:00020 NCBI chrNW_004955431:5,673,207...5,691,615
Ensembl chrNW_004955431:5,672,701...5,694,197 		JBrowse link
cysteine metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cars1 cysteinyl-tRNA synthetase 1 ISO SMPDB SMP:00013 NCBI chrNW_004955422:14,685,356...14,738,420
Ensembl chrNW_004955422:14,682,178...14,738,428 		JBrowse link
G Cdo1 cysteine dioxygenase type 1 ISO SMPDB SMP:00013 NCBI chrNW_004955408:35,593,981...35,605,189
Ensembl chrNW_004955408:35,593,767...35,605,189 		JBrowse link
G Cth cystathionine gamma-lyase ISO SMPDB SMP:00013 NCBI chrNW_004955423:21,542,587...21,567,935
Ensembl chrNW_004955423:21,542,179...21,567,786 		JBrowse link
G Ctns cystinosin, lysosomal cystine transporter ISO SMPDB SMP:00013 NCBI chrNW_004955467:13,151,663...13,169,005
Ensembl chrNW_004955467:13,151,957...13,168,696 		JBrowse link
G Gclc glutamate-cysteine ligase catalytic subunit ISO SMPDB SMP:00013 NCBI chrNW_004955411:2,593,523...2,617,553
Ensembl chrNW_004955411:2,593,541...2,616,539 		JBrowse link
G Gclm glutamate-cysteine ligase modifier subunit ISO SMPDB SMP:00013 NCBI chrNW_004955423:782,468...805,384
Ensembl chrNW_004955423:782,468...805,384 		JBrowse link
G Got1 glutamic-oxaloacetic transaminase 1 ISO SMPDB SMP:00013 NCBI chrNW_004955507:5,346,937...5,370,072
Ensembl chrNW_004955507:5,346,838...5,370,072 		JBrowse link
G Mpst mercaptopyruvate sulfurtransferase ISO SMPDB SMP:00013 NCBI chrNW_004955413:23,538,648...23,543,132
Ensembl chrNW_004955413:23,538,648...23,547,120 		JBrowse link
glutamic acid/glutamate metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abat 4-aminobutyrate aminotransferase ISO SMPDB SMP:00072 NCBI chrNW_004955442:9,422,849...9,516,054
Ensembl chrNW_004955442:9,422,849...9,516,103 		JBrowse link
G Aldh4a1 aldehyde dehydrogenase 4 family member A1 ISO SMPDB SMP:00072 NCBI chrNW_004955527:338,593...369,528
Ensembl chrNW_004955527:338,593...372,872 		JBrowse link
G Aldh5a1 aldehyde dehydrogenase 5 family member A1 ISO SMPDB SMP:00072 NCBI chrNW_004955483:2,467,425...2,494,416
Ensembl chrNW_004955483:2,467,425...2,494,416 		JBrowse link
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase ISO SMPDB SMP:00072 NCBI chrNW_004955469:9,203,433...9,227,526
Ensembl chrNW_004955469:9,203,434...9,227,865 		JBrowse link
G Cps1 carbamoyl-phosphate synthase 1 ISO SMPDB SMP:00072 NCBI chrNW_004955457:4,848,116...4,961,384
Ensembl chrNW_004955457:4,844,152...4,961,246 		JBrowse link
G Ears2 glutamyl-tRNA synthetase 2, mitochondrial ISO SMPDB SMP:00072 NCBI chrNW_004955493:2,083,272...2,113,403
Ensembl chrNW_004955493:2,090,940...2,113,843 		JBrowse link
G Gad1 glutamate decarboxylase 1 ISO SMPDB SMP:00072 NCBI chrNW_004955449:3,964,006...4,001,850
Ensembl chrNW_004955449:3,963,705...4,001,850 		JBrowse link
G Gclc glutamate-cysteine ligase catalytic subunit ISO SMPDB SMP:00072 NCBI chrNW_004955411:2,593,523...2,617,553
Ensembl chrNW_004955411:2,593,541...2,616,539 		JBrowse link
G Gclm glutamate-cysteine ligase modifier subunit ISO SMPDB SMP:00072 NCBI chrNW_004955423:782,468...805,384
Ensembl chrNW_004955423:782,468...805,384 		JBrowse link
G Gfpt1 glutamine--fructose-6-phosphate transaminase 1 ISO SMPDB SMP:00072 NCBI chrNW_004955424:15,692,088...15,739,894
Ensembl chrNW_004955424:15,692,088...15,739,894 		JBrowse link
G Gls2 glutaminase 2 ISO SMPDB SMP:00072 NCBI chrNW_004955458:4,055,088...4,065,307
Ensembl chrNW_004955458:4,050,674...4,065,322 		JBrowse link
G Glud1 glutamate dehydrogenase 1 ISO SMPDB SMP:00072 NCBI chrNW_004955510:5,987,811...6,021,001 JBrowse link
G Glul glutamate-ammonia ligase ISO SMPDB
RGD		 PMID:28323 PMID:4403443 RGD:2301547 RGD:2301548 SMP:00072 NCBI chrNW_004955406:21,266,383...21,274,546
Ensembl chrNW_004955406:21,266,383...21,275,309 		JBrowse link
G Gmps guanine monophosphate synthase ISO SMPDB SMP:00072 NCBI chrNW_004955448:6,931,891...6,984,662
Ensembl chrNW_004955448:6,932,926...6,984,662 		JBrowse link
G Gnpnat1 glucosamine-phosphate N-acetyltransferase 1 ISO SMPDB SMP:00072 NCBI chrNW_004955409:10,406,248...10,424,431
Ensembl chrNW_004955409:10,406,723...10,424,431 		JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 ISO SMPDB SMP:00072 NCBI chrNW_004955433:16,121,795...16,145,129
Ensembl chrNW_004955433:16,122,824...16,145,113 		JBrowse link
G Gpt glutamic--pyruvic transaminase ISO SMPDB SMP:00072 NCBI chrNW_004955454:3,127,997...3,132,459
Ensembl chrNW_004955454:3,127,997...3,132,459 		JBrowse link
G Gsr glutathione-disulfide reductase ISO SMPDB SMP:00072 NCBI chrNW_004955463:7,130,459...7,153,631
Ensembl chrNW_004955463:7,131,364...7,153,583 		JBrowse link
G Gss glutathione synthetase ISO SMPDB SMP:00072 NCBI chrNW_004955422:26,427,581...26,483,380
Ensembl chrNW_004955422:26,427,581...26,463,781 		JBrowse link
G Nadsyn1 NAD synthetase 1 ISO SMPDB SMP:00072 NCBI chrNW_004955422:15,067,711...15,113,942
Ensembl chrNW_004955422:15,066,708...15,114,049 		JBrowse link
G Nagk N-acetylglucosamine kinase ISO SMPDB SMP:00072 NCBI chrNW_004955424:14,205,689...14,215,201
Ensembl chrNW_004955424:14,205,813...14,215,156 		JBrowse link
G Ppat phosphoribosyl pyrophosphate amidotransferase ISO SMPDB SMP:00072 NCBI chrNW_004955447:14,552,846...14,607,416
Ensembl chrNW_004955447:14,574,407...14,607,416 		JBrowse link
G Qars1 glutaminyl-tRNA synthetase 1 ISO SMPDB SMP:00072 NCBI chrNW_004955532:1,093,444...1,100,591
Ensembl chrNW_004955532:1,092,125...1,100,603 		JBrowse link
glycine metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shmt1 serine hydroxymethyltransferase 1 ISO RGD PMID:3110140 RGD:2300383 NCBI chrNW_004955478:10,972,791...11,001,535
Ensembl chrNW_004955478:10,978,139...11,001,202 		JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 ISO RGD PMID:3110140 RGD:2300383 NCBI chrNW_004955458:4,957,614...4,962,691
Ensembl chrNW_004955458:4,957,602...4,962,691 		JBrowse link
glycine, serine and threonine metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shmt1 serine hydroxymethyltransferase 1 ISO RGD PMID:3110140 PMID:15671219 RGD:1359815 RGD:2300383 NCBI chrNW_004955478:10,972,791...11,001,535
Ensembl chrNW_004955478:10,978,139...11,001,202 		JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 ISO RGD PMID:3110140 PMID:15671219 RGD:1359815 RGD:2300383 NCBI chrNW_004955458:4,957,614...4,962,691
Ensembl chrNW_004955458:4,957,602...4,962,691 		JBrowse link
histidine metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh2 aldehyde dehydrogenase 2 family member ISO SMPDB SMP:00044 NCBI chrNW_004955482:8,352,569...8,383,097
Ensembl chrNW_004955482:8,352,569...8,384,899 		JBrowse link
G Aldh3a1 aldehyde dehydrogenase 3 family member A1 ISO SMPDB SMP:00044 NCBI chrNW_004955467:96,140...105,738
Ensembl chrNW_004955467:96,140...105,738 		JBrowse link
G Amdhd1 amidohydrolase domain containing 1 ISO SMPDB SMP:00044 NCBI chrNW_004955405:32,281,726...32,308,230
Ensembl chrNW_004955405:32,283,413...32,308,230 		JBrowse link
G Aoc1 amine oxidase copper containing 1 ISO SMPDB SMP:00044 NCBI chrNW_004955491:5,316,482...5,326,262
Ensembl chrNW_004955491:5,316,476...5,326,305 		JBrowse link
G Carns1 carnosine synthase 1 ISO SMPDB SMP:00044 NCBI chrNW_004955422:18,051,721...18,061,500
Ensembl chrNW_004955422:18,051,721...18,061,487 		JBrowse link
G Cndp1 carnosine dipeptidase 1 ISO SMPDB SMP:00044 NCBI chrNW_004955402:57,970,205...58,019,980
Ensembl chrNW_004955402:57,970,161...58,019,479 		JBrowse link
G Cndp2 carnosine dipeptidase 2 ISO SMPDB SMP:00044 NCBI chrNW_004955402:57,939,003...57,960,056
Ensembl chrNW_004955402:57,938,276...57,960,056 		JBrowse link
G Ftcd formimidoyltransferase cyclodeaminase ISO SMPDB SMP:00044 NCBI chrNW_004955407:42,608,249...42,617,167
Ensembl chrNW_004955407:42,607,872...42,617,166 		JBrowse link
G Hal histidine ammonia-lyase ISO SMPDB SMP:00044 NCBI chrNW_004955405:32,317,345...32,341,409
Ensembl chrNW_004955405:32,316,326...32,341,485 		JBrowse link
G Hars1 histidyl-tRNA synthetase 1 ISO SMPDB SMP:00044 NCBI chrNW_004955418:19,346...30,514
Ensembl chrNW_004955418:19,346...30,514 		JBrowse link
G Hars2 histidyl-tRNA synthetase 2, mitochondrial ISO SMPDB SMP:00044 NCBI chrNW_004955418:12,550...19,282
Ensembl chrNW_004955418:12,550...19,282 		JBrowse link
G Hdc histidine decarboxylase ISO SMPDB SMP:00044 NCBI chrNW_004955409:4,051,574...4,072,641
Ensembl chrNW_004955409:4,051,271...4,072,642 		JBrowse link
G Hnmt histamine N-methyltransferase ISO SMPDB SMP:00044 NCBI chrNW_004955440:5,084,198...5,137,577
Ensembl chrNW_004955440:5,084,081...5,139,348 		JBrowse link
G Maoa amine oxidase [flavin-containing] A ISO SMPDB SMP:00044 NCBI chrNW_004955516:4,494,133...4,576,317
Ensembl chrNW_004955516:4,493,946...4,576,317 		JBrowse link
G Prmt3 protein arginine methyltransferase 3 ISO SMPDB SMP:00044 NCBI chrNW_004955476:1,222,579...1,331,582
Ensembl chrNW_004955476:1,223,076...1,331,582 		JBrowse link
G Uroc1 urocanate hydratase 1 ISO SMPDB SMP:00044 NCBI chrNW_004955421:21,734,910...21,765,754
Ensembl chrNW_004955421:21,732,262...21,765,772 		JBrowse link
kynurenine metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acmsd aminocarboxymuconate semialdehyde decarboxylase ISO RGD PMID:25773161 RGD:11062165 NCBI chrNW_004955440:2,348,434...2,412,706
Ensembl chrNW_004955440:2,348,396...2,412,706 		JBrowse link
G Afmid arylformamidase ISO RGD PMID:25773161 RGD:11062165 NCBI chrNW_004955506:4,351,623...4,379,528
Ensembl chrNW_004955506:4,365,926...4,379,447 		JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 ISO RGD PMID:19826765 RGD:11081066 NCBI chrNW_004955433:16,121,795...16,145,129
Ensembl chrNW_004955433:16,122,824...16,145,113 		JBrowse link
G Haao 3-hydroxyanthranilate 3,4-dioxygenase ISO RGD PMID:25773161 RGD:11062165 NCBI chrNW_004955441:10,114,863...10,128,948
Ensembl chrNW_004955441:10,110,380...10,129,015 		JBrowse link
G Ido1 indoleamine 2,3-dioxygenase 1 ISO RGD PMID:25773161 PMID:26186743 PMID:32369456 RGD:11062165 RGD:11081068 RGD:39939073 NCBI chrNW_004955536:2,944,770...2,955,829
Ensembl chrNW_004955536:2,943,611...2,955,829 		JBrowse link
G Ido2 indoleamine 2,3-dioxygenase 2 ISO RGD PMID:25773161 RGD:11062165 NCBI chrNW_004955536:2,894,410...2,938,862
Ensembl chrNW_004955536:2,894,308...2,939,016 		JBrowse link
G Kmo kynurenine 3-monooxygenase ISO RGD PMID:25773161 PMID:26589832 RGD:11062165 RGD:11081069 NCBI chrNW_004955406:10,496,102...10,527,181
Ensembl chrNW_004955406:10,493,379...10,527,201 		JBrowse link
G Kyat1 kynurenine aminotransferase 1 ISO RGD PMID:19826765 RGD:11081066 NCBI chrNW_004955570:1,211,950...1,260,561
Ensembl chrNW_004955570:1,211,160...1,254,303 		JBrowse link
G Kyat3 kynurenine aminotransferase 3 ISO RGD PMID:19826765 RGD:11081066 NCBI chrNW_004955423:5,340,863...5,388,460
Ensembl chrNW_004955423:5,344,562...5,391,518 		JBrowse link
G Kynu kynureninase ISO RGD PMID:25773161 RGD:11062165 NCBI chrNW_004955440:9,420,141...9,536,767
Ensembl chrNW_004955440:9,420,009...9,536,761 		JBrowse link
G Tdo2 tryptophan 2,3-dioxygenase ISO RGD PMID:25773161 PMID:27072164 RGD:11062165 RGD:11081067 NCBI chrNW_004955471:11,229,795...11,245,255
Ensembl chrNW_004955471:11,229,273...11,245,375 		JBrowse link
lysine degradation pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aass aminoadipate-semialdehyde synthase ISO SMPDB SMP:00037 NCBI chrNW_004955479:3,746,003...3,805,835
Ensembl chrNW_004955479:3,742,757...3,814,338 		JBrowse link
G Acat1 acetyl-CoA acetyltransferase 1 ISO SMPDB SMP:00037 NCBI chrNW_004955412:10,350,088...10,369,806
Ensembl chrNW_004955412:10,349,593...10,369,806 		JBrowse link
G Aldh7a1 aldehyde dehydrogenase 7 family member A1 ISO SMPDB SMP:00037 NCBI chrNW_004955521:4,365,075...4,396,105
Ensembl chrNW_004955521:4,364,638...4,396,129 		JBrowse link
G Dhtkd1 dehydrogenase E1 and transketolase domain containing 1 ISO SMPDB SMP:00037 NCBI chrNW_004955462:103,501...163,472
Ensembl chrNW_004955462:103,598...162,344 		JBrowse link
G Dld dihydrolipoamide dehydrogenase ISO SMPDB SMP:00037 NCBI chrNW_004955410:12,212,981...12,238,561
Ensembl chrNW_004955410:12,212,963...12,238,561 		JBrowse link
G Dlst dihydrolipoamide S-succinyltransferase ISO SMPDB SMP:00037 NCBI chrNW_004955523:660,413...680,878
Ensembl chrNW_004955523:661,738...680,802 		JBrowse link
G Echs1 enoyl-CoA hydratase, short chain 1 ISO SMPDB SMP:00037 NCBI chrNW_004955477:11,012,451...11,021,487
Ensembl chrNW_004955477:11,012,451...11,021,486 		JBrowse link
G Gcdh glutaryl-CoA dehydrogenase ISO SMPDB SMP:00037 NCBI chrNW_004955415:31,952,400...31,958,067
Ensembl chrNW_004955415:31,952,580...31,961,615 		JBrowse link
G Hadh hydroxyacyl-CoA dehydrogenase ISO SMPDB SMP:00037 NCBI chrNW_004955496:1,835,034...1,861,410
Ensembl chrNW_004955496:1,835,034...1,861,407 		JBrowse link
G Pipox pipecolic acid and sarcosine oxidase ISO SMPDB SMP:00037 NCBI chrNW_004955481:4,128,503...4,225,027
Ensembl chrNW_004955481:4,128,509...4,143,334 		JBrowse link
G Slc7a2 solute carrier family 7 member 2 ISO SMPDB SMP:00037 NCBI chrNW_004955552:2,117,972...2,141,144
Ensembl chrNW_004955552:2,117,755...2,141,231 		JBrowse link
methionine cycle/metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahcy adenosylhomocysteinase ISO SMPDB
RGD		 PMID:2292587 PMID:11741948 PMID:23073625 RGD:7242425 RGD:7242932 RGD:730275 SMP:00033 NCBI chrNW_004955422:26,992,295...27,013,100
Ensembl chrNW_004955422:26,992,295...27,013,100 		JBrowse link
G Amd1 adenosylmethionine decarboxylase 1 ISO RGD
SMPDB		 PMID:2292587 PMID:23073625 RGD:7242425 RGD:7242932 SMP:00033 NCBI chrNW_004955411:35,541,517...35,563,209
Ensembl chrNW_004955411:35,541,517...35,563,209 		JBrowse link
G As3mt arsenite methyltransferase ISO RGD PMID:11790780 RGD:625365 NCBI chrNW_004955485:7,576,627...7,599,005
Ensembl chrNW_004955485:7,575,580...7,599,559 		JBrowse link
G Asmt acetylserotonin O-methyltransferase ISO RGD PMID:12198599 RGD:1359073 NCBI chrNW_004955499:1,131,637...1,151,861
Ensembl chrNW_004955499:1,131,588...1,152,802 		JBrowse link
G Bhmt betaine--homocysteine S-methyltransferase ISO SMPDB
RGD		 PMID:15845641 PMID:23073625 RGD:1359026 RGD:7242425 SMP:00033 NCBI chrNW_004955425:21,992,219...22,009,389
Ensembl chrNW_004955425:21,991,665...22,009,855 		JBrowse link
G Carm1 coactivator associated arginine methyltransferase 1 ISO RGD PMID:15866169 PMID:21074527 RGD:1359044 RGD:7242552 NCBI chrNW_004955495:1,983,599...2,002,174
Ensembl chrNW_004955495:1,983,599...2,002,174 		JBrowse link
G Cbs cystathionine beta-synthase ISO SMPDB SMP:00033 NCBI chrNW_004955407:38,924,355...38,939,790
Ensembl chrNW_004955407:38,924,321...38,939,790 		JBrowse link
G Chdh choline dehydrogenase ISO SMPDB SMP:00033 NCBI chrNW_004955430:3,797,924...3,831,326
Ensembl chrNW_004955430:3,799,970...3,805,474 		JBrowse link
G Comt catechol-O-methyltransferase ISO RGD PMID:12584150 RGD:1359089 NCBI chrNW_004955442:18,130,282...18,152,153
Ensembl chrNW_004955442:18,130,987...18,137,412 		JBrowse link
G Cth cystathionine gamma-lyase ISO SMPDB SMP:00033 NCBI chrNW_004955423:21,542,587...21,567,935
Ensembl chrNW_004955423:21,542,179...21,567,786 		JBrowse link
G Dnmt1 DNA methyltransferase 1 ISO SMPDB
RGD		 PMID:12473678 PMID:22342103 RGD:1359078 RGD:7242551 SMP:00033 NCBI chrNW_004955495:1,465,529...1,505,379
Ensembl chrNW_004955495:1,465,480...1,505,462 		JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha ISO RGD PMID:22342103 RGD:7242551 NCBI chrNW_004955469:7,264,431...7,367,059
Ensembl chrNW_004955469:7,269,952...7,367,059 		JBrowse link
G Dnmt3b DNA methyltransferase 3 beta ISO RGD PMID:22342103 RGD:7242551 NCBI chrNW_004955422:28,380,595...28,427,012
Ensembl chrNW_004955422:28,380,591...28,421,301 		JBrowse link
G Dot1l DOT1 like histone lysine methyltransferase ISO RGD PMID:12628190 PMID:22194015 RGD:1359080 RGD:7242554 NCBI chrNW_004955495:5,907,486...5,958,241
Ensembl chrNW_004955495:5,909,880...5,959,027 		JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit ISO RGD PMID:22194015 RGD:7242554 NCBI chrNW_004955491:4,215,353...4,292,229
Ensembl chrNW_004955491:4,215,298...4,292,235 		JBrowse link
G Gamt guanidinoacetate N-methyltransferase ISO RGD PMID:15533043 RGD:1359081 NCBI chrNW_004955495:6,536,541...6,539,424
Ensembl chrNW_004955495:6,536,544...6,539,424 		JBrowse link
G Gnmt glycine N-methyltransferase ISO RGD PMID:15347642 PMID:22342103 PMID:23073625 RGD:1359070 RGD:7242425 RGD:7242551 NCBI chrNW_004955437:8,944,288...8,946,642
Ensembl chrNW_004955437:8,944,047...8,946,642 		JBrowse link
G Hnmt histamine N-methyltransferase ISO RGD PMID:11566133 RGD:1359041 NCBI chrNW_004955440:5,084,198...5,137,577
Ensembl chrNW_004955440:5,084,081...5,139,348 		JBrowse link
G Il4i1 interleukin 4 induced 1 ISO SMPDB SMP:00033 NCBI chrNW_004955559:1,012,634...1,047,051
Ensembl chrNW_004955559:1,034,917...1,047,034 		JBrowse link
G Kmt5a lysine methyltransferase 5A ISO RGD PMID:22194015 RGD:7242554 NCBI chrNW_004955482:5,488,151...5,500,764
Ensembl chrNW_004955482:5,485,649...5,501,636 		JBrowse link
G Mars1 methionyl-tRNA synthetase 1 ISO SMPDB SMP:00033 NCBI chrNW_004955458:5,215,853...5,233,037
Ensembl chrNW_004955458:5,215,853...5,233,037 		JBrowse link
G Mat1a methionine adenosyltransferase 1A ISO RGD PMID:2292587 PMID:9202427 PMID:23073625 RGD:1359039 RGD:7242425 RGD:7242932 NCBI chrNW_004955510:283,860...300,991
Ensembl chrNW_004955510:281,331...300,985 		JBrowse link
G Mat2a methionine adenosyltransferase 2A ISO SMPDB
RGD		 PMID:11099469 PMID:23073625 RGD:1359040 RGD:7242425 SMP:00033 NCBI chrNW_004955424:1,953,623...1,961,164
Ensembl chrNW_004955424:1,953,623...1,961,164 		JBrowse link
G Mat2b methionine adenosyltransferase 2 non-catalytic beta subunit ISO SMPDB
RGD		 PMID:23073625 RGD:7242425 SMP:00033 NCBI chrNW_004955408:16,910,414...16,924,663 JBrowse link
G Mrm2 mitochondrial rRNA methyltransferase 2 ISO RGD PMID:11827451 RGD:1359074 NCBI chrNW_004955460:9,673,550...9,678,233 JBrowse link
G Msrb2 methionine sulfoxide reductase B2 ISO SMPDB SMP:00033 NCBI chrNW_004955429:5,867,091...5,887,460
Ensembl chrNW_004955429:5,867,091...5,887,587 		JBrowse link
G Msrb3 methionine sulfoxide reductase B3 ISO SMPDB SMP:00033 NCBI chrNW_004955458:12,004,928...12,159,625
Ensembl chrNW_004955458:12,004,806...12,159,954 		JBrowse link
G Mtap methylthioadenosine phosphorylase ISO RGD
SMPDB		 PMID:2292587 RGD:7242932 SMP:00033 NCBI chrNW_004955472:12,391,399...12,439,221
Ensembl chrNW_004955472:12,390,032...12,439,206 		JBrowse link
G Mtfmt mitochondrial methionyl-tRNA formyltransferase ISO SMPDB SMP:00033 NCBI chrNW_004955450:10,399,472...10,415,813
Ensembl chrNW_004955450:10,399,470...10,415,872 		JBrowse link
G Mthfr methylenetetrahydrofolate reductase ISO SMPDB
RGD		 PMID:11933257 RGD:1535021 SMP:00033 NCBI chrNW_004955486:2,096,379...2,112,240
Ensembl chrNW_004955486:2,096,379...2,112,240 		JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase ISO SMPDB
RGD		 PMID:15845641 PMID:20814827 PMID:23073625 RGD:1359026 RGD:7242425 RGD:7242426 SMP:00033 NCBI chrNW_004955492:3,372,915...3,474,173
Ensembl chrNW_004955492:3,376,512...3,474,180 		JBrowse link
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase ISO RGD PMID:15979034 PMID:20814827 RGD:1359037 RGD:7242426 NCBI chrNW_004955504:5,412,290...5,435,409
Ensembl chrNW_004955504:5,413,586...5,435,645 		JBrowse link
G Nnmt nicotinamide N-methyltransferase ISO RGD PMID:15922112 RGD:1359084 NCBI chrNW_004955412:15,892,906...15,916,166 JBrowse link
G Pcmt1 protein-L-isoaspartate (D-aspartate) O-methyltransferase ISO RGD PMID:8263531 RGD:729481 NCBI chrNW_004955439:11,480,094...11,531,842
Ensembl chrNW_004955439:11,480,101...11,531,839 		JBrowse link
G Pemt phosphatidylethanolamine N-methyltransferase ISO RGD PMID:8344945 RGD:729486 NCBI chrNW_004955577:365,031...443,138
Ensembl chrNW_004955577:367,288...443,138 		JBrowse link
G Pnmt phenylethanolamine N-methyltransferase ISO RGD PMID:12438084 RGD:1359087 NCBI chrNW_004955451:14,414,836...14,417,972
Ensembl chrNW_004955451:14,416,121...14,417,901 		JBrowse link
G Prmt1 protein arginine methyltransferase 1 ISO RGD PMID:15866169 PMID:21074527 RGD:1359044 RGD:7242552 NCBI chrNW_004955559:1,205,340...1,215,672
Ensembl chrNW_004955559:1,203,283...1,215,021 		JBrowse link
G Prmt2 protein arginine methyltransferase 2 ISO RGD PMID:21074527 RGD:7242552 NCBI chrNW_004955407:42,991,305...43,019,332
Ensembl chrNW_004955407:42,992,469...43,018,760 		JBrowse link
G Prmt3 protein arginine methyltransferase 3 ISO RGD PMID:21074527 RGD:7242552 NCBI chrNW_004955476:1,222,579...1,331,582
Ensembl chrNW_004955476:1,223,076...1,331,582 		JBrowse link
G Prmt5 protein arginine methyltransferase 5 ISO RGD PMID:15866169 PMID:21074527 RGD:1359044 RGD:7242552 NCBI chrNW_004955409:37,369,507...37,378,034
Ensembl chrNW_004955409:37,369,234...37,378,093 		JBrowse link
G Prmt6 protein arginine methyltransferase 6 ISO RGD PMID:15866169 PMID:21074527 RGD:1359044 RGD:7242552 NCBI chrNW_004955435:10,816,787...10,818,047
Ensembl chrNW_004955435:10,816,831...10,817,961 		JBrowse link
G Prmt7 protein arginine methyltransferase 7 ISO RGD PMID:21074527 RGD:7242552 NCBI chrNW_004955484:8,299,427...8,352,465
Ensembl chrNW_004955484:8,299,427...8,340,287 		JBrowse link
G Rnmt RNA guanine-7 methyltransferase ISO RGD PMID:11472630 RGD:1359071 NCBI chrNW_004955402:319,520...344,129 JBrowse link
G Setd7 SET domain containing 7, histone lysine methyltransferase ISO RGD PMID:22194015 RGD:7242554 NCBI chrNW_004955428:4,131,431...4,178,250
Ensembl chrNW_004955428:4,131,103...4,178,250 		JBrowse link
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 ISO RGD PMID:11959841 RGD:1359072 NCBI chrNW_004955588:290,497...338,438
Ensembl chrNW_004955588:290,168...338,426 		JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 ISO SMPDB SMP:00033 NCBI chrNW_004955478:10,972,791...11,001,535
Ensembl chrNW_004955478:10,978,139...11,001,202 		JBrowse link
G Sms spermine synthase ISO RGD PMID:23073625 RGD:7242425 NCBI chrNW_004955509:2,277,501...2,328,612
Ensembl chrNW_004955509:2,276,878...2,329,620 		JBrowse link
G Smyd2 SET and MYND domain containing 2 ISO RGD PMID:22194015 RGD:7242554 NCBI chrNW_004955406:3,467,123...3,509,156
Ensembl chrNW_004955406:3,465,924...3,509,156 		JBrowse link
G Srm spermidine synthase ISO SMPDB
RGD		 PMID:23073625 RGD:7242425 SMP:00033 NCBI chrNW_004955486:2,631,579...2,634,779
Ensembl chrNW_004955486:2,631,586...2,634,527 		JBrowse link
G Suv39h1 SUV39H1 histone lysine methyltransferase ISO RGD PMID:22194015 RGD:7242554 NCBI chrNW_004955543:258,479...271,128
Ensembl chrNW_004955543:258,479...272,473 		JBrowse link
G Suv39h2 SUV39H2 histone lysine methyltransferase ISO RGD PMID:22194015 RGD:7242554 NCBI chrNW_004955429:19,503,197...19,526,454
Ensembl chrNW_004955429:19,503,197...19,528,027 		JBrowse link
tryptophan metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aanat aralkylamine N-acetyltransferase ISO SMPDB SMP:00063 NCBI chrNW_004955506:5,828,666...5,834,812
Ensembl chrNW_004955506:5,828,659...5,834,812 		JBrowse link
G Acmsd aminocarboxymuconate semialdehyde decarboxylase ISO SMPDB SMP:00063 NCBI chrNW_004955440:2,348,434...2,412,706
Ensembl chrNW_004955440:2,348,396...2,412,706 		JBrowse link
G Afmid arylformamidase ISO SMPDB SMP:00063 NCBI chrNW_004955506:4,351,623...4,379,528
Ensembl chrNW_004955506:4,365,926...4,379,447 		JBrowse link
G Aldh2 aldehyde dehydrogenase 2 family member ISO SMPDB SMP:00063 NCBI chrNW_004955482:8,352,569...8,383,097
Ensembl chrNW_004955482:8,352,569...8,384,899 		JBrowse link
G Aox1 aldehyde oxidase 1 ISO SMPDB SMP:00063 NCBI chrNW_004955403:827,538...875,856
Ensembl chrNW_004955403:828,066...872,218 		JBrowse link
G Asmt acetylserotonin O-methyltransferase ISO SMPDB SMP:00063 NCBI chrNW_004955499:1,131,637...1,151,861
Ensembl chrNW_004955499:1,131,588...1,152,802 		JBrowse link
G Cat catalase ISO SMPDB SMP:00063 NCBI chrNW_004955422:11,783,973...11,826,970
Ensembl chrNW_004955422:11,781,835...11,827,464 		JBrowse link
G Ddc dopa decarboxylase ISO SMPDB SMP:00063 NCBI chrNW_004955456:3,513,779...3,582,851
Ensembl chrNW_004955456:3,513,042...3,582,911 		JBrowse link
G Haao 3-hydroxyanthranilate 3,4-dioxygenase ISO SMPDB SMP:00063 NCBI chrNW_004955441:10,114,863...10,128,948
Ensembl chrNW_004955441:10,110,380...10,129,015 		JBrowse link
G Ido1 indoleamine 2,3-dioxygenase 1 ISO SMPDB
RGD		 PMID:3400092 PMID:10719243 RGD:2290190 RGD:2290313 SMP:00063 NCBI chrNW_004955536:2,944,770...2,955,829
Ensembl chrNW_004955536:2,943,611...2,955,829 		JBrowse link
G Kmo kynurenine 3-monooxygenase ISO RGD
SMPDB		 PMID:3400092 PMID:6466295 RGD:2290312 RGD:2290313 SMP:00063 NCBI chrNW_004955406:10,496,102...10,527,181
Ensembl chrNW_004955406:10,493,379...10,527,201 		JBrowse link
G Kynu kynureninase ISO SMPDB
RGD		 PMID:3400092 PMID:6466295 PMID:7236232 RGD:2290312 RGD:2290313 RGD:2303721 SMP:00063 NCBI chrNW_004955440:9,420,141...9,536,767
Ensembl chrNW_004955440:9,420,009...9,536,761 		JBrowse link
G LOC102010850 cytochrome P450 1A1 ISO SMPDB SMP:00063 NCBI chrNW_004955450:3,183,958...3,189,488
Ensembl chrNW_004955450:3,183,750...3,189,488 		JBrowse link
G Tdo2 tryptophan 2,3-dioxygenase ISO SMPDB
RGD		 PMID:3400092 PMID:7236232 PMID:10719243 RGD:2290190 RGD:2290313 RGD:2303721 SMP:00063 NCBI chrNW_004955471:11,229,795...11,245,255
Ensembl chrNW_004955471:11,229,273...11,245,375 		JBrowse link
G Tph1 tryptophan hydroxylase 1 ISO SMPDB SMP:00063 NCBI chrNW_004955414:32,803,417...32,828,682
Ensembl chrNW_004955414:32,800,477...32,828,501 		JBrowse link
G Wars1 tryptophanyl-tRNA synthetase 1 ISO SMPDB SMP:00063 NCBI chrNW_004955438:21,414,878...21,445,417
Ensembl chrNW_004955438:21,414,815...21,445,042 		JBrowse link
G Wars2 tryptophanyl tRNA synthetase 2, mitochondrial ISO SMPDB SMP:00063 NCBI chrNW_004955435:22,032,230...22,115,138
Ensembl chrNW_004955435:22,032,230...22,115,138 		JBrowse link
tyrosine metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh3a1 aldehyde dehydrogenase 3 family member A1 ISO SMPDB SMP:00006 NCBI chrNW_004955467:96,140...105,738
Ensembl chrNW_004955467:96,140...105,738 		JBrowse link
G Aoc1 amine oxidase copper containing 1 ISO SMPDB SMP:00006 NCBI chrNW_004955491:5,316,482...5,326,262
Ensembl chrNW_004955491:5,316,476...5,326,305 		JBrowse link
G Comt catechol-O-methyltransferase ISO SMPDB SMP:00006 NCBI chrNW_004955442:18,130,282...18,152,153
Ensembl chrNW_004955442:18,130,987...18,137,412 		JBrowse link
G Dbh dopamine beta-hydroxylase ISO SMPDB SMP:00006 NCBI chrNW_004955513:2,918,085...2,932,481
Ensembl chrNW_004955513:2,918,286...2,932,247 		JBrowse link
G Dct dopachrome tautomerase ISO SMPDB SMP:00006 NCBI chrNW_004955404:15,359,402...15,395,556
Ensembl chrNW_004955404:15,359,402...15,395,535 		JBrowse link
G Ddc dopa decarboxylase ISO SMPDB SMP:00006 NCBI chrNW_004955456:3,513,779...3,582,851
Ensembl chrNW_004955456:3,513,042...3,582,911 		JBrowse link
G Fah fumarylacetoacetate hydrolase ISO SMPDB SMP:00006 NCBI chrNW_004955533:904,294...921,730
Ensembl chrNW_004955533:904,295...921,730 		JBrowse link
G Got1 glutamic-oxaloacetic transaminase 1 ISO SMPDB SMP:00006 NCBI chrNW_004955507:5,346,937...5,370,072
Ensembl chrNW_004955507:5,346,838...5,370,072 		JBrowse link
G Gstz1 glutathione S-transferase zeta 1 ISO SMPDB SMP:00006 NCBI chrNW_004955438:1,218,990...1,231,407
Ensembl chrNW_004955438:1,219,018...1,231,287 		JBrowse link
G Haao 3-hydroxyanthranilate 3,4-dioxygenase ISO SMPDB SMP:00006 NCBI chrNW_004955441:10,114,863...10,128,948
Ensembl chrNW_004955441:10,110,380...10,129,015 		JBrowse link
G Hgd homogentisate 1,2-dioxygenase ISO SMPDB SMP:00006 NCBI chrNW_004955427:20,141,522...20,188,700
Ensembl chrNW_004955427:20,137,861...20,188,700 		JBrowse link
G Hpd 4-hydroxyphenylpyruvate dioxygenase ISO SMPDB SMP:00006 NCBI chrNW_004955482:6,586,975...6,595,034
Ensembl chrNW_004955482:6,586,975...6,595,034 		JBrowse link
G Maoa amine oxidase [flavin-containing] A ISO SMPDB SMP:00006 NCBI chrNW_004955516:4,494,133...4,576,317
Ensembl chrNW_004955516:4,493,946...4,576,317 		JBrowse link
G Mif macrophage migration inhibitory factor ISO SMPDB SMP:00006 NCBI chrNW_004955455:8,367,566...8,368,460
Ensembl chrNW_004955455:8,367,566...8,368,460 		JBrowse link
G Pnmt phenylethanolamine N-methyltransferase ISO SMPDB SMP:00006 NCBI chrNW_004955451:14,414,836...14,417,972
Ensembl chrNW_004955451:14,416,121...14,417,901 		JBrowse link
G Tat tyrosine aminotransferase ISO SMPDB SMP:00006 NCBI chrNW_004955484:4,278,083...4,287,535
Ensembl chrNW_004955484:4,276,953...4,287,627 		JBrowse link
G Tyr tyrosinase ISO SMPDB SMP:00006 NCBI chrNW_004955414:4,244,035...4,314,001
Ensembl chrNW_004955414:4,244,035...4,314,001 		JBrowse link
urea cycle pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arg1 arginase 1 ISO RGD
SMPDB		 PMID:4062872 RGD:2300098 SMP:00059 NCBI chrNW_004955436:12,235,767...12,247,817
Ensembl chrNW_004955436:12,235,767...12,251,972 		JBrowse link
G Arg2 arginase 2 ISO RGD PMID:19764983 RGD:4144088 NCBI chrNW_004955466:2,549,557...2,577,060
Ensembl chrNW_004955466:2,549,557...2,577,060 		JBrowse link
G Asl argininosuccinate lyase ISO SMPDB
RGD		 PMID:4062872 RGD:2300098 SMP:00059 NCBI chrNW_004955456:8,409,767...8,419,915
Ensembl chrNW_004955456:8,411,220...8,416,992 		JBrowse link
G Ass1 argininosuccinate synthase 1 ISO SMPDB
RGD		 PMID:4062872 RGD:2300098 SMP:00059 NCBI chrNW_004955513:443,372...485,190
Ensembl chrNW_004955513:445,462...485,190 		JBrowse link
G Cps1 carbamoyl-phosphate synthase 1 ISO SMPDB
RGD		 PMID:3680220 PMID:4062872 RGD:1582379 RGD:2300098 SMP:00059 NCBI chrNW_004955457:4,848,116...4,961,384
Ensembl chrNW_004955457:4,844,152...4,961,246 		JBrowse link
G Gls2 glutaminase 2 ISO SMPDB SMP:00059 NCBI chrNW_004955458:4,055,088...4,065,307
Ensembl chrNW_004955458:4,050,674...4,065,322 		JBrowse link
G Glud1 glutamate dehydrogenase 1 ISO SMPDB SMP:00059 NCBI chrNW_004955510:5,987,811...6,021,001 JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 ISO SMPDB SMP:00059 NCBI chrNW_004955433:16,121,795...16,145,129
Ensembl chrNW_004955433:16,122,824...16,145,113 		JBrowse link
G Gpt glutamic--pyruvic transaminase ISO SMPDB SMP:00059 NCBI chrNW_004955454:3,127,997...3,132,459
Ensembl chrNW_004955454:3,127,997...3,132,459 		JBrowse link
G Otc ornithine transcarbamylase ISO RGD
SMPDB		 PMID:3680220 PMID:4062872 RGD:1582379 RGD:2300098 SMP:00059 NCBI chrNW_004955601:481,524...543,176
Ensembl chrNW_004955601:481,480...543,176 		JBrowse link
G Slc1a4 solute carrier family 1 member 4 ISO SMPDB SMP:00059 NCBI chrNW_004955424:19,474,082...19,499,592
Ensembl chrNW_004955424:19,474,082...19,499,592 		JBrowse link
G Slc1a5 solute carrier family 1 member 5 ISO SMPDB SMP:00059 NCBI chrNW_004955574:798,004...806,631 JBrowse link
G Slc25a12 solute carrier family 25 member 12 ISO SMPDB SMP:00059 NCBI chrNW_004955449:3,093,603...3,182,513
Ensembl chrNW_004955449:3,093,603...3,186,737 		JBrowse link
G Slc25a15 solute carrier family 25 member 15 ISO SMPDB SMP:00059 NCBI chrNW_004955431:5,673,207...5,691,615
Ensembl chrNW_004955431:5,672,701...5,694,197 		JBrowse link
valine, leucine and isoleucine biosynthetic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcat2 branched chain amino acid transaminase 2 ISO RGD PMID:11733007 RGD:1582175 NCBI chrNW_004955559:1,785,253...1,796,838
Ensembl chrNW_004955559:1,785,253...1,797,899 		JBrowse link
valine, leucine and isoleucine degradation pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abat 4-aminobutyrate aminotransferase ISO SMPDB SMP:00032 NCBI chrNW_004955442:9,422,849...9,516,054
Ensembl chrNW_004955442:9,422,849...9,516,103 		JBrowse link
G Acaa2 acetyl-CoA acyltransferase 2 ISO SMPDB SMP:00032 NCBI chrNW_004955402:34,857,317...34,885,169
Ensembl chrNW_004955402:34,857,317...34,885,169 		JBrowse link
G Acad8 acyl-CoA dehydrogenase family member 8 ISO SMPDB SMP:00032 NCBI chrNW_004955412:35,067,637...35,083,889
Ensembl chrNW_004955412:35,067,702...35,083,889 		JBrowse link
G Acadm acyl-CoA dehydrogenase medium chain ISO SMPDB SMP:00032 NCBI chrNW_004955423:17,173,648...17,199,189
Ensembl chrNW_004955423:17,172,779...17,199,090 		JBrowse link
G Acads acyl-CoA dehydrogenase short chain ISO SMPDB SMP:00032 NCBI chrNW_004955455:10,928,560...10,942,748
Ensembl chrNW_004955455:10,928,560...10,942,926 		JBrowse link
G Acadsb acyl-CoA dehydrogenase short/branched chain ISO SMPDB SMP:00032 NCBI chrNW_004955477:1,177,704...1,213,347
Ensembl chrNW_004955477:1,177,680...1,213,347 		JBrowse link
G Acat1 acetyl-CoA acetyltransferase 1 ISO SMPDB SMP:00032 NCBI chrNW_004955412:10,350,088...10,369,806
Ensembl chrNW_004955412:10,349,593...10,369,806 		JBrowse link
G Aldh2 aldehyde dehydrogenase 2 family member ISO SMPDB SMP:00032 NCBI chrNW_004955482:8,352,569...8,383,097
Ensembl chrNW_004955482:8,352,569...8,384,899 		JBrowse link
G Aldh6a1 aldehyde dehydrogenase 6 family member A1 ISO SMPDB SMP:00032 NCBI chrNW_004955523:1,343,545...1,369,080
Ensembl chrNW_004955523:1,343,545...1,369,073 		JBrowse link
G Aox1 aldehyde oxidase 1 ISO SMPDB SMP:00032 NCBI chrNW_004955403:827,538...875,856
Ensembl chrNW_004955403:828,066...872,218 		JBrowse link
G Auh AU RNA binding methylglutaconyl-CoA hydratase ISO SMPDB SMP:00032 NCBI chrNW_004955515:971,778...1,124,019
Ensembl chrNW_004955515:971,800...1,123,474 		JBrowse link
G Bcat1 branched chain amino acid transaminase 1 ISO SMPDB SMP:00032 NCBI chrNW_004955413:19,975,395...20,087,656
Ensembl chrNW_004955413:19,981,328...20,087,638 		JBrowse link
G Bcat2 branched chain amino acid transaminase 2 ISO RGD PMID:11733007 RGD:1582175 NCBI chrNW_004955559:1,785,253...1,796,838
Ensembl chrNW_004955559:1,785,253...1,797,899 		JBrowse link
G Bckdha branched chain keto acid dehydrogenase E1 subunit alpha ISO SMPDB SMP:00032 NCBI chrNW_004955555:334,253...357,417
Ensembl chrNW_004955555:333,642...358,799 		JBrowse link
G Bckdhb branched chain keto acid dehydrogenase E1 subunit beta ISO SMPDB SMP:00032 NCBI chrNW_004955411:8,427,875...8,626,564
Ensembl chrNW_004955411:8,437,548...8,628,363 		JBrowse link
G Dbt dihydrolipoamide branched chain transacylase E2 ISO SMPDB SMP:00032 NCBI chrNW_004955435:4,975,664...5,005,126
Ensembl chrNW_004955435:4,973,830...5,017,816 		JBrowse link
G Dld dihydrolipoamide dehydrogenase ISO SMPDB SMP:00032 NCBI chrNW_004955410:12,212,981...12,238,561
Ensembl chrNW_004955410:12,212,963...12,238,561 		JBrowse link
G Echs1 enoyl-CoA hydratase, short chain 1 ISO SMPDB SMP:00032 NCBI chrNW_004955477:11,012,451...11,021,487
Ensembl chrNW_004955477:11,012,451...11,021,486 		JBrowse link
G Hibadh 3-hydroxyisobutyrate dehydrogenase ISO SMPDB SMP:00032 NCBI chrNW_004955410:29,180,411...29,294,273
Ensembl chrNW_004955410:29,180,184...29,294,315 		JBrowse link
G Hibch 3-hydroxyisobutyryl-CoA hydrolase ISO SMPDB SMP:00032 NCBI chrNW_004955403:8,752,339...8,796,693
Ensembl chrNW_004955403:8,752,309...8,792,927 		JBrowse link
G Hmgcl 3-hydroxy-3-methylglutaryl-CoA lyase ISO SMPDB SMP:00032 NCBI chrNW_004955452:3,720,103...3,734,730
Ensembl chrNW_004955452:3,720,103...3,735,192 		JBrowse link
G Hmgcs2 3-hydroxy-3-methylglutaryl-CoA synthase 2 ISO SMPDB SMP:00032 NCBI chrNW_004955435:22,804,484...22,820,807
Ensembl chrNW_004955435:22,804,484...22,821,482 		JBrowse link
G Hsd17b10 hydroxysteroid 17-beta dehydrogenase 10 ISO SMPDB SMP:00032 NCBI chrNW_004955475:478,690...481,029
Ensembl chrNW_004955475:478,690...481,029 		JBrowse link
G Ivd isovaleryl-CoA dehydrogenase ISO SMPDB SMP:00032 NCBI chrNW_004955416:7,327,557...7,341,533
Ensembl chrNW_004955416:7,327,557...7,346,027 		JBrowse link
G Mccc1 methylcrotonyl-CoA carboxylase subunit 1 ISO SMPDB SMP:00032 NCBI chrNW_004955420:11,781,662...11,828,060
Ensembl chrNW_004955420:11,781,104...11,820,338 		JBrowse link
G Mccc2 methylcrotonyl-CoA carboxylase subunit 2 ISO SMPDB SMP:00032 NCBI chrNW_004955575:445,627...503,891
Ensembl chrNW_004955575:445,619...505,040 		JBrowse link
G Mcee methylmalonyl-CoA epimerase ISO SMPDB SMP:00032 NCBI chrNW_004955416:29,684,557...29,703,495
Ensembl chrNW_004955416:29,685,385...29,698,557 		JBrowse link
G Mmut methylmalonyl-CoA mutase ISO SMPDB SMP:00032 NCBI chrNW_004955411:8,363,142...8,397,839
Ensembl chrNW_004955411:8,363,142...8,399,216 		JBrowse link
G Oxct1 3-oxoacid CoA-transferase 1 ISO SMPDB SMP:00032 NCBI chrNW_004955426:25,885,518...25,998,187
Ensembl chrNW_004955426:25,885,518...26,003,743 		JBrowse link
G Pcca propionyl-CoA carboxylase subunit alpha ISO SMPDB SMP:00032 NCBI chrNW_004955404:10,317,640...10,719,148
Ensembl chrNW_004955404:10,317,640...10,661,496 		JBrowse link
G Pccb propionyl-CoA carboxylase subunit beta ISO SMPDB SMP:00032 NCBI chrNW_004955501:2,474,330...2,563,107
Ensembl chrNW_004955501:2,474,330...2,563,837 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 3930
    classic metabolic pathway 967
      amino acid metabolic pathway 179
        altered amino acid metabolic pathway + 0
        amino acid biosynthetic pathway + 0
        amino acid degradation pathway + 11
        amino acid metabolic pathway (KEGG) + 105
        hydrophilic amino acid metabolic pathway + 45
        hydrophobic amino acid metabolic pathway + 90
        urea cycle pathway 14
paths to the root