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Pathways
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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:classic metabolic pathway
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Accession:PW:0000002 term browser browse the term
Definition:The various, enzyme-controlled, series of reactions allowing for the conversion of materials, energy availability and biodegradation of xenobiotics.
Comment:The definition was compiled based on a number of available defintions in various dictionaries.
Synonyms:related_synonym: Metabolism;   metabolic process

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acetylcholine metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ache acetylcholinesterase (Cartwright blood group) ISO activities of Ache and Chat varied considerably between different layers of the cerebellar vermis
rostral-caudal differences in Ache and Chat enzyme activities in the superior colliculus		 RGD PMID:126256 PMID:334962 PMID:4008917 PMID:6854006 RGD:2301195 RGD:2301197 RGD:2301199 RGD:2301203 NCBI chrNW_004936543:856,678...862,080
Ensembl chrNW_004936543:856,676...862,109 		JBrowse link
G Chat choline O-acetyltransferase ISO rostral-caudal differences in Ache and Chat enzyme activities in the superior colliculus
activities of Ache and Chat varied considerably between different layers of the cerebellar vermis		 RGD PMID:126256 PMID:334962 PMID:4008917 PMID:6854006 RGD:2301195 RGD:2301197 RGD:2301199 RGD:2301203 NCBI chrNW_004936728:653,654...702,433
Ensembl chrNW_004936728:654,638...700,213 		JBrowse link
ADP-ribosylation pathway, cyclic ribosylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bst1 bone marrow stromal cell antigen 1 ISO RGD PMID:23576305 RGD:11250406 NCBI chrNW_004936477:12,195,323...12,218,261
Ensembl chrNW_004936477:12,195,309...12,218,294 		JBrowse link
G Cd38 CD38 molecule ISO RGD PMID:23576305 RGD:11250406 NCBI chrNW_004936477:12,109,761...12,156,037
Ensembl chrNW_004936477:12,108,742...12,156,248 		JBrowse link
ADP-ribosylation pathway, mono and poly-ribosylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aplf aprataxin and PNKP like factor ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004936491:12,857,928...12,961,709
Ensembl chrNW_004936491:12,857,785...12,962,376 		JBrowse link
G Chfr checkpoint with forkhead and ring finger domains ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004936660:2,725,019...2,754,564
Ensembl chrNW_004936660:2,724,989...2,754,586 		JBrowse link
G LOC101962583 protein mono-ADP-ribosyltransferase PARP14 ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004936536:8,923,398...8,976,583
Ensembl chrNW_004936536:8,923,411...8,974,283 		JBrowse link
G Macrod1 mono-ADP ribosylhydrolase 1 ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004936599:5,018,636...5,154,844
Ensembl chrNW_004936599:5,018,770...5,154,491 		JBrowse link
G Macrod2 mono-ADP ribosylhydrolase 2 ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004936485:3,917,060...5,859,527
Ensembl chrNW_004936485:3,919,525...5,859,251 		JBrowse link
G Oard1 O-acyl-ADP-ribose deacylase 1 ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004936476:18,751,344...18,757,094
Ensembl chrNW_004936476:18,751,364...18,757,094 		JBrowse link
G Parg poly(ADP-ribose) glycohydrolase ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004936728:428,028...538,413
Ensembl chrNW_004936728:428,028...541,530 		JBrowse link
G Parp1 poly(ADP-ribose) polymerase 1 ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004936526:3,102,468...3,147,601
Ensembl chrNW_004936526:3,102,039...3,147,642 		JBrowse link
G Parp11 poly(ADP-ribose) polymerase family member 11 ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004936606:4,062,301...4,120,389
Ensembl chrNW_004936606:4,063,171...4,120,397 		JBrowse link
G Parp12 poly(ADP-ribose) polymerase family member 12 ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004936592:4,195,931...4,233,304
Ensembl chrNW_004936592:4,196,753...4,228,287 		JBrowse link
G Parp16 poly(ADP-ribose) polymerase family member 16 ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004936471:25,561,136...25,580,801
Ensembl chrNW_004936471:25,562,250...25,580,587 		JBrowse link
G Parp2 poly(ADP-ribose) polymerase 2 ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004936877:554,969...564,905
Ensembl chrNW_004936877:554,473...564,903 		JBrowse link
G Parp3 poly(ADP-ribose) polymerase family member 3 ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004936529:3,291,282...3,297,581
Ensembl chrNW_004936529:3,291,269...3,299,992 		JBrowse link
G Parp4 poly(ADP-ribose) polymerase family member 4 ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004936720:2,049,045...2,138,649
Ensembl chrNW_004936720:2,048,455...2,119,662 		JBrowse link
G Parp6 poly(ADP-ribose) polymerase family member 6 ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004936471:31,625,231...31,656,204
Ensembl chrNW_004936471:31,625,231...31,655,208 		JBrowse link
G Parp8 poly(ADP-ribose) polymerase family member 8 ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004936480:16,297,110...16,465,178
Ensembl chrNW_004936480:16,296,401...16,465,506 		JBrowse link
G Parp9 poly(ADP-ribose) polymerase family member 9 ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004936536:8,806,824...8,845,099
Ensembl chrNW_004936536:8,806,818...8,840,746 		JBrowse link
G Rnf146 ring finger protein 146 ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004936639:2,394,566...2,417,452
Ensembl chrNW_004936639:2,393,150...2,417,982 		JBrowse link
G Tiparp TCDD inducible poly(ADP-ribose) polymerase ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004936519:3,683,972...3,712,081
Ensembl chrNW_004936519:3,684,515...3,712,081 		JBrowse link
G Tnks tankyrase ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004936573:788,909...993,453
Ensembl chrNW_004936573:794,184...994,247 		JBrowse link
G Tnks2 tankyrase 2 ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004936601:2,776,338...2,837,703
Ensembl chrNW_004936601:2,776,345...2,837,707 		JBrowse link
G Zc3hav1 zinc finger CCCH-type containing, antiviral 1 ISO RGD PMID:26091342 RGD:11100038 NCBI chrNW_004936592:3,321,564...3,379,015
Ensembl chrNW_004936592:3,321,454...3,358,983 		JBrowse link
alanine metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aars1 alanyl-tRNA synthetase 1 ISO SMPDB SMP:00055 NCBI chrNW_004936475:23,268,613...23,294,236
Ensembl chrNW_004936475:23,268,491...23,294,496 		JBrowse link
G Aars2 alanyl-tRNA synthetase 2, mitochondrial ISO SMPDB SMP:00055 NCBI chrNW_004936476:15,772,203...15,784,316
Ensembl chrNW_004936476:15,771,905...15,784,373 		JBrowse link
G Agxt alanine--glyoxylate and serine--pyruvate aminotransferase ISO SMPDB SMP:00055 NCBI chrNW_004936745:856,915...867,477
Ensembl chrNW_004936745:857,102...867,477 		JBrowse link
G Gpt glutamic--pyruvic transaminase ISO SMPDB SMP:00055 NCBI chrNW_004936470:7,765,810...7,770,837
Ensembl chrNW_004936470:7,765,703...7,768,465 		JBrowse link
G Pc pyruvate carboxylase ISO SMPDB SMP:00055 NCBI chrNW_004936599:2,677,770...2,793,033
Ensembl chrNW_004936599:2,677,583...2,793,197 		JBrowse link
aldosterone biosynthetic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fdx1 ferredoxin 1 ISO RGD PMID:18821018 RGD:2325883 NCBI chrNW_004936612:3,878,179...3,905,678
Ensembl chrNW_004936612:3,874,748...3,905,825 		JBrowse link
G Fdxr ferredoxin reductase ISO RGD PMID:18821018 RGD:2325883 NCBI chrNW_004936594:215,165...223,715
Ensembl chrNW_004936594:215,155...223,771 		JBrowse link
G LOC101965545 NADPH--cytochrome P450 reductase ISO RGD PMID:17926129 RGD:4892309 NCBI chrNW_004936543:2,275,981...2,327,931
Ensembl chrNW_004936543:2,274,059...2,328,008 		JBrowse link
G LOC101975820 cholesterol side-chain cleavage enzyme, mitochondrial ISO RGD PMID:17926129 RGD:4892309 NCBI chrNW_004936471:33,367,810...33,380,764
Ensembl chrNW_004936471:33,367,810...33,380,764 		JBrowse link
G LOC101977414 steroid 21-hydroxylase ISO RGD PMID:15583024 RGD:4889549 NCBI chrNW_004936727:1,550,783...1,553,327
Ensembl chrNW_004936727:1,550,783...1,553,327 		JBrowse link
G Star steroidogenic acute regulatory protein ISO RGD PMID:18821018 RGD:2325883 NCBI chrNW_004936710:1,523,289...1,530,181
Ensembl chrNW_004936710:1,523,355...1,529,672 		JBrowse link
alpha-linolenic acid metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elovl4 ELOVL fatty acid elongase 4 ISO SMPDB SMP:00018 NCBI chrNW_004936510:10,246,901...10,276,049
Ensembl chrNW_004936510:10,246,356...10,276,753 		JBrowse link
G Elovl5 ELOVL fatty acid elongase 5 ISO SMPDB SMP:00018 NCBI chrNW_004936476:7,536,635...7,618,271 JBrowse link
G Fads1 fatty acid desaturase 1 ISO SMPDB SMP:00018 NCBI chrNW_004936581:1,312,199...1,327,046
Ensembl chrNW_004936581:1,312,183...1,327,998 		JBrowse link
G Fads2 fatty acid desaturase 2 ISO SMPDB SMP:00018 NCBI chrNW_004936581:1,203,410...1,233,330
Ensembl chrNW_004936581:1,203,366...1,233,469 		JBrowse link
G Pla2g4b phospholipase A2 group IVB ISO SMPDB SMP:00018 NCBI chrNW_004936471:5,145,736...5,153,930
Ensembl chrNW_004936471:5,145,502...5,153,498 		JBrowse link
altered citric acid cycle pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fh fumarate hydratase ISO RGD PMID:17211469 RGD:6907135 NCBI chrNW_004936526:8,936,096...8,965,155
Ensembl chrNW_004936526:8,935,991...8,965,367 		JBrowse link
G Sdhb succinate dehydrogenase complex iron sulfur subunit B ISO RGD PMID:21771581 RGD:6907134 NCBI chrNW_004936474:3,993,224...4,021,359
Ensembl chrNW_004936474:3,990,778...4,021,423 		JBrowse link
G Sdhd succinate dehydrogenase complex subunit D ISO RGD PMID:21771581 RGD:6907134 NCBI chrNW_004936612:2,357,336...2,369,204 JBrowse link
altered folate cycle metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1l1 aldehyde dehydrogenase 1 family member L1 ISO RGD PMID:22353665 RGD:7242562 NCBI chrNW_004936898:456,299...484,681
Ensembl chrNW_004936898:456,521...484,282 		JBrowse link
G Dhfr dihydrofolate reductase ISO RGD PMID:22108709 RGD:7242557 NCBI chrNW_004936469:67,962...83,116 JBrowse link
G Folr1 folate receptor alpha ISO RGD PMID:22108709 RGD:7242557 NCBI chrNW_004936498:1,489,916...1,497,200
Ensembl chrNW_004936498:1,491,547...1,497,226 		JBrowse link
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 ISO RGD PMID:22108709 RGD:7242557 NCBI chrNW_004936495:8,100,977...8,170,244
Ensembl chrNW_004936495:8,100,912...8,171,800 		JBrowse link
G Mthfr methylenetetrahydrofolate reductase ISO RGD PMID:22108709 RGD:7242557 NCBI chrNW_004936474:623,438...637,849
Ensembl chrNW_004936474:623,291...638,193 		JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase ISO RGD PMID:22108709 RGD:7242557 NCBI chrNW_004936484:16,087,924...16,180,089
Ensembl chrNW_004936484:16,087,923...16,180,148 		JBrowse link
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase ISO RGD PMID:22108709 RGD:7242557 NCBI chrNW_004936643:379,790...410,034
Ensembl chrNW_004936643:380,968...409,464 		JBrowse link
G Slc46a1 solute carrier family 46 member 1 ISO RGD PMID:22108709 RGD:7242557 NCBI chrNW_004936538:4,549,032...4,642,870
Ensembl chrNW_004936538:4,549,599...4,555,415 		JBrowse link
altered folate mediated one-carbon metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 ISO RGD PMID:22353665 RGD:7242562 NCBI chrNW_004936495:8,100,977...8,170,244
Ensembl chrNW_004936495:8,100,912...8,171,800 		JBrowse link
G Mthfr methylenetetrahydrofolate reductase ISO RGD PMID:22353665 RGD:7242562 NCBI chrNW_004936474:623,438...637,849
Ensembl chrNW_004936474:623,291...638,193 		JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase ISO RGD PMID:22353665 RGD:7242562 NCBI chrNW_004936484:16,087,924...16,180,089
Ensembl chrNW_004936484:16,087,923...16,180,148 		JBrowse link
altered galactose metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G G6pc1 glucose-6-phosphatase catalytic subunit 1 ISO RGD PMID:8865366 RGD:728661 NCBI chrNW_004936490:17,605,865...17,614,754
Ensembl chrNW_004936490:17,605,865...17,615,145 		JBrowse link
G Hk2 hexokinase 2 ISO RGD PMID:7622509 RGD:632917 NCBI chrNW_004936556:1,054,143...1,113,425
Ensembl chrNW_004936556:1,054,021...1,113,450 		JBrowse link
altered lipoprotein metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoa1 apolipoprotein A1 ISO RGD PMID:16011471 RGD:1578416 NCBI chrNW_004936542:2,111,055...2,112,626
Ensembl chrNW_004936542:2,111,052...2,112,854 		JBrowse link
G Apoa4 apolipoprotein A4 ISO RGD PMID:16011471 RGD:1578416 NCBI chrNW_004936542:2,098,683...2,101,127
Ensembl chrNW_004936542:2,098,683...2,101,127 		JBrowse link
G Apob apolipoprotein B ISO RGD PMID:16011471 RGD:1578416 NCBI chrNW_004936493:10,509,118...10,549,144
Ensembl chrNW_004936493:10,509,118...10,549,144 		JBrowse link
G Apoc1 apolipoprotein C1 ISO RGD PMID:10073946 RGD:1578471 NCBI chrNW_004936706:1,519,248...1,520,102 JBrowse link
G Apoc2 apolipoprotein C2 ISO RGD PMID:10073946 RGD:1578471 NCBI chrNW_004936706:1,531,219...1,531,921 JBrowse link
G Apoc3 apolipoprotein C3 ISO RGD PMID:10073946 RGD:1578471 NCBI chrNW_004936542:2,106,927...2,108,412
Ensembl chrNW_004936542:2,106,318...2,108,603 		JBrowse link
G Apoe apolipoprotein E ISO RGD PMID:16011471 RGD:1578416 NCBI chrNW_004936706:1,512,438...1,516,805 JBrowse link
altered retinoid cycle metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca4 ATP binding cassette subfamily A member 4 ISO RGD PMID:20212494 RGD:8547536 NCBI chrNW_004936537:4,969,456...5,326,682
Ensembl chrNW_004936537:5,202,093...5,323,527 		JBrowse link
G Lrat lecithin retinol acyltransferase ISO RGD PMID:20212494 RGD:8547536 NCBI chrNW_004936576:1,491,480...1,498,568
Ensembl chrNW_004936576:1,492,297...1,501,917 		JBrowse link
G Rbp3 retinol binding protein 3 ISO RGD PMID:20212494 RGD:8547536 NCBI chrNW_004936554:7,329,155...7,340,434
Ensembl chrNW_004936554:7,329,028...7,338,074 		JBrowse link
G Rdh12 retinol dehydrogenase 12 ISO RGD PMID:20212494 RGD:8547536 NCBI chrNW_004936495:11,111,247...11,121,976
Ensembl chrNW_004936495:11,111,105...11,121,341 		JBrowse link
G Rlbp1 retinaldehyde binding protein 1 ISO RGD PMID:20212494 RGD:8547536 NCBI chrNW_004936483:15,086,485...15,097,980
Ensembl chrNW_004936483:15,084,756...15,096,072 		JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 ISO RGD PMID:20212494 RGD:8547536 NCBI chrNW_004936591:3,347,346...3,368,062
Ensembl chrNW_004936591:3,347,272...3,368,015 		JBrowse link
altered reverse cholesterol transport pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca1 ATP binding cassette subfamily A member 1 ISO RGD PMID:11086027 RGD:1600951 NCBI chrNW_004936559:7,177,887...7,312,660
Ensembl chrNW_004936559:7,177,904...7,312,741 		JBrowse link
amino sugar metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chit1 chitinase 1 ISO SMPDB SMP:00045 NCBI chrNW_004936567:1,373,727...1,385,694
Ensembl chrNW_004936567:1,376,768...1,385,616 		JBrowse link
G Cmas cytidine monophosphate N-acetylneuraminic acid synthetase ISO SMPDB SMP:00045 NCBI chrNW_004936548:4,877,753...4,895,768
Ensembl chrNW_004936548:4,877,530...4,895,822 		JBrowse link
G Gfpt1 glutamine--fructose-6-phosphate transaminase 1 ISO SMPDB SMP:00045 NCBI chrNW_004936491:13,603,256...13,665,298
Ensembl chrNW_004936491:13,603,256...13,665,275 		JBrowse link
G Gne glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase ISO SMPDB SMP:00045 NCBI chrNW_004936524:4,184,831...4,234,257
Ensembl chrNW_004936524:4,196,830...4,252,163 		JBrowse link
G Gnpda1 glucosamine-6-phosphate deaminase 1 ISO SMPDB SMP:00045 NCBI chrNW_004936504:12,181,544...12,192,596 JBrowse link
G Gnpnat1 glucosamine-phosphate N-acetyltransferase 1 ISO SMPDB SMP:00045 NCBI chrNW_004936697:2,079,396...2,087,602
Ensembl chrNW_004936697:2,079,470...2,086,877 		JBrowse link
G Hexa hexosaminidase subunit alpha ISO SMPDB SMP:00045 NCBI chrNW_004936471:31,712,485...31,738,273
Ensembl chrNW_004936471:31,709,491...31,738,245 		JBrowse link
G Hk1 hexokinase 1 ISO SMPDB SMP:00045 NCBI chrNW_004936521:9,067,062...9,139,112
Ensembl chrNW_004936521:9,066,999...9,159,793 		JBrowse link
G LOC101977071 sialin ISO SMPDB SMP:00045 NCBI chrNW_004936859:668,900...684,207 JBrowse link
G Nagk N-acetylglucosamine kinase ISO SMPDB SMP:00045 NCBI chrNW_004936491:15,183,493...15,193,069
Ensembl chrNW_004936491:15,183,804...15,192,950 		JBrowse link
G Nanp N-acetylneuraminic acid phosphatase ISO SMPDB SMP:00045 NCBI chrNW_004936620:235,013...245,138
Ensembl chrNW_004936620:234,964...246,803 		JBrowse link
G Nans N-acetylneuraminate synthase ISO SMPDB SMP:00045 NCBI chrNW_004936524:6,772,831...6,791,854
Ensembl chrNW_004936524:6,772,796...6,791,902 		JBrowse link
G Npl N-acetylneuraminate pyruvate lyase ISO SMPDB SMP:00045 NCBI chrNW_004936481:6,942,128...6,977,042
Ensembl chrNW_004936481:6,942,282...6,972,775 		JBrowse link
G Pgm3 phosphoglucomutase 3 ISO SMPDB SMP:00045 NCBI chrNW_004936510:7,586,817...7,622,586
Ensembl chrNW_004936510:7,586,837...7,609,267 		JBrowse link
G Renbp renin binding protein ISO SMPDB SMP:00045 NCBI chrNW_004936809:817,392...823,926
Ensembl chrNW_004936809:817,355...823,941 		JBrowse link
G Uap1 UDP-N-acetylglucosamine pyrophosphorylase 1 ISO SMPDB SMP:00045 NCBI chrNW_004936831:733,072...770,495
Ensembl chrNW_004936831:732,967...771,478 		JBrowse link
angiotensin (1-7) signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ace2 angiotensin converting enzyme 2 ISO RGD PMID:15638741 RGD:1581742 NCBI chrNW_004936470:4,964,526...5,011,808
Ensembl chrNW_004936470:4,965,332...5,011,702 		JBrowse link
G Agt angiotensinogen ISO RGD PMID:15951342 RGD:1581938 NCBI chrNW_004936484:19,713,299...19,721,144
Ensembl chrNW_004936484:19,716,165...19,721,261 		JBrowse link
G LOC101968921 angiotensin-converting enzyme ISO RGD PMID:10642323 PMID:15283675 RGD:1581953 RGD:1598433 NCBI chrNW_004936541:4,157,847...4,178,156
Ensembl chrNW_004936541:4,157,393...4,178,177 		JBrowse link
G Mme membrane metalloendopeptidase ISO RGD PMID:10642323 PMID:15638741 PMID:16520407 RGD:1581742 RGD:1581931 RGD:1581953 NCBI chrNW_004936519:2,513,896...2,595,896
Ensembl chrNW_004936519:2,513,704...2,595,971 		JBrowse link
angiotensin II signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen ISO RGD PMID:16141358 RGD:1581847 NCBI chrNW_004936484:19,713,299...19,721,144
Ensembl chrNW_004936484:19,716,165...19,721,261 		JBrowse link
G Agtr1 angiotensin II receptor type 1 ISO RGD PMID:15590154 RGD:1579760 NCBI chrNW_004936519:6,831,096...6,873,977
Ensembl chrNW_004936519:6,831,096...6,873,985 		JBrowse link
G Agtr2 angiotensin II receptor type 2 ISO RGD PMID:14657020 RGD:1566502 NCBI chrNW_004936479:13,252,678...13,255,570
Ensembl chrNW_004936479:13,252,678...13,255,570 		JBrowse link
G Jak2 Janus kinase 2 ISO RGD PMID:16269269 RGD:1600094 NCBI chrNW_004936503:111,722...243,627
Ensembl chrNW_004936503:110,963...241,867 		JBrowse link
G LOC101968921 angiotensin-converting enzyme ISO RGD PMID:15638741 RGD:1581742 NCBI chrNW_004936541:4,157,847...4,178,156
Ensembl chrNW_004936541:4,157,393...4,178,177 		JBrowse link
G Olr1 oxidized low density lipoprotein receptor 1 ISO RGD PMID:12661921 RGD:1580992 NCBI chrNW_004936902:405,536...416,393
Ensembl chrNW_004936902:409,704...416,401 		JBrowse link
G Pdpk1 3-phosphoinositide dependent protein kinase 1 ISO RGD PMID:14585963 RGD:1581775 NCBI chrNW_004936694:1,444,819...1,487,628
Ensembl chrNW_004936694:1,444,880...1,488,265
Ensembl chrNW_004936694:1,444,880...1,488,265 		JBrowse link
G Pla2g6 phospholipase A2 group VI ISO RGD PMID:17613534 RGD:12910844 NCBI chrNW_004936492:3,011,752...3,060,962
Ensembl chrNW_004936492:3,011,772...3,060,986 		JBrowse link
G Prkcz protein kinase C zeta ISO RGD PMID:16113073 RGD:1642674 NCBI chrNW_004936737:1,303,502...1,383,135
Ensembl chrNW_004936737:1,303,887...1,321,944 		JBrowse link
angiotensin II signaling pathway via AT1 receptor term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen ISO RGD PMID:16141358 RGD:1581847 NCBI chrNW_004936484:19,713,299...19,721,144
Ensembl chrNW_004936484:19,716,165...19,721,261 		JBrowse link
G Agtr1 angiotensin II receptor type 1 ISO RGD PMID:9287353 PMID:10977869 PMID:12446719 PMID:14559250 RGD:1581825 RGD:2316188 RGD:5133683 RGD:629553 NCBI chrNW_004936519:6,831,096...6,873,977
Ensembl chrNW_004936519:6,831,096...6,873,985 		JBrowse link
G Agtrap angiotensin II receptor associated protein ISO RGD PMID:17875818 RGD:2314353 NCBI chrNW_004936474:585,440...597,493
Ensembl chrNW_004936474:585,440...597,257 		JBrowse link
G Arap1 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 ISO RGD PMID:14559250 RGD:2316188 NCBI chrNW_004936498:1,953,770...2,016,875
Ensembl chrNW_004936498:1,953,762...2,003,367 		JBrowse link
G Arrb1 arrestin beta 1 ISO RGD PMID:16304060 RGD:5133417 NCBI chrNW_004936498:4,089,621...4,172,749
Ensembl chrNW_004936498:4,094,893...4,172,755 		JBrowse link
G Arrb2 arrestin beta 2 ISO RGD PMID:16304060 RGD:5133417 NCBI chrNW_004936677:3,173,054...3,181,475
Ensembl chrNW_004936677:3,172,925...3,181,520 		JBrowse link
G Gna11 G protein subunit alpha 11 ISO RGD PMID:16141358 RGD:1581847 NCBI chrNW_004936588:1,770,777...1,789,143
Ensembl chrNW_004936588:1,770,771...1,789,170 		JBrowse link
G Grk2 G protein-coupled receptor kinase 2 ISO RGD PMID:16304060 RGD:5133417 NCBI chrNW_004936599:2,437,061...2,456,141
Ensembl chrNW_004936599:2,437,032...2,456,147 		JBrowse link
G Grk3 G protein-coupled receptor kinase 3 ISO RGD PMID:16304060 RGD:5133417 NCBI chrNW_004936657:425,902...522,331
Ensembl chrNW_004936657:426,787...521,198 		JBrowse link
G Grk5 G protein-coupled receptor kinase 5 ISO RGD PMID:16304060 RGD:5133417 NCBI chrNW_004936486:8,720,036...8,830,472
Ensembl chrNW_004936486:8,720,036...8,831,075 		JBrowse link
G Grk6 G protein-coupled receptor kinase 6 ISO RGD PMID:16304060 RGD:5133417 NCBI chrNW_004936597:1,706,671...1,722,370
Ensembl chrNW_004936597:1,706,665...1,722,370 		JBrowse link
G Jak2 Janus kinase 2 ISO RGD PMID:9287353 PMID:9314843 RGD:5133683 RGD:6478796 NCBI chrNW_004936503:111,722...243,627
Ensembl chrNW_004936503:110,963...241,867 		JBrowse link
G LOC101971998 guanine nucleotide-binding protein G(q) subunit alpha ISO RGD PMID:16141358 RGD:1581847 NCBI chrNW_004936503:13,098,517...13,276,106
Ensembl chrNW_004936503:13,099,558...13,276,152 		JBrowse link
G Rgs2 regulator of G protein signaling 2 ISO RGD PMID:12588881 RGD:5133418 NCBI chrNW_004936638:1,065,866...1,068,649
Ensembl chrNW_004936638:1,065,832...1,069,247 		JBrowse link
G Tyk2 tyrosine kinase 2 ISO RGD PMID:9314843 RGD:6478796 NCBI chrNW_004936659:681,463...704,484
Ensembl chrNW_004936659:681,310...702,962 		JBrowse link
angiotensin II signaling pathway via AT2 receptor term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen ISO RGD PMID:16286564 PMID:16286568 PMID:22949090 RGD:1582434 RGD:1582435 RGD:7401256 NCBI chrNW_004936484:19,713,299...19,721,144
Ensembl chrNW_004936484:19,716,165...19,721,261 		JBrowse link
G Agtr2 angiotensin II receptor type 2 ISO RGD PMID:10977869 PMID:22949090 RGD:1581825 RGD:7401256 NCBI chrNW_004936479:13,252,678...13,255,570
Ensembl chrNW_004936479:13,252,678...13,255,570 		JBrowse link
G Cnksr1 connector enhancer of kinase suppressor of Ras 1 ISO RGD PMID:20889352 RGD:5133679 NCBI chrNW_004936474:10,697,777...10,706,988
Ensembl chrNW_004936474:10,699,819...10,706,591 		JBrowse link
G Dusp1 dual specificity phosphatase 1 ISO RGD PMID:18804122 RGD:5133675 NCBI chrNW_004936609:2,688,170...2,691,057
Ensembl chrNW_004936609:2,688,181...2,690,408 		JBrowse link
G Erbb3 erb-b2 receptor tyrosine kinase 3 ISO RGD PMID:20889352 RGD:5133679 NCBI chrNW_004936646:497,783...515,247
Ensembl chrNW_004936646:498,749...513,297 		JBrowse link
G Gnai2 G protein subunit alpha i2 ISO RGD PMID:22949090 RGD:7401256 NCBI chrNW_004936529:1,779,582...1,801,251
Ensembl chrNW_004936529:1,779,571...1,801,255 		JBrowse link
G Gnai3 G protein subunit alpha i3 ISO RGD PMID:22949090 RGD:7401256 NCBI chrNW_004936704:1,031,476...1,075,662
Ensembl chrNW_004936704:1,032,708...1,074,384 		JBrowse link
G Mtus1 microtubule associated scaffold protein 1 ISO RGD PMID:20889352 RGD:5133679 NCBI chrNW_004936614:242,710...387,541
Ensembl chrNW_004936614:240,113...387,730 		JBrowse link
G Ptpn6 protein tyrosine phosphatase non-receptor type 6 ISO RGD PMID:18804122 RGD:5133675 NCBI chrNW_004936709:864,206...884,630
Ensembl chrNW_004936709:864,197...884,610 		JBrowse link
G Slc9a6 solute carrier family 9 member A6 ISO RGD PMID:20889352 RGD:5133679 NCBI chrNW_004936513:11,158,609...11,215,477
Ensembl chrNW_004936513:11,158,730...11,215,568 		JBrowse link
G Timp3 TIMP metallopeptidase inhibitor 3 ISO RGD PMID:20889352 RGD:5133679 NCBI chrNW_004936492:6,996,627...7,046,137
Ensembl chrNW_004936492:6,996,613...7,046,190 		JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 ISO RGD PMID:20889352 RGD:5133679 NCBI chrNW_004936612:389,877...570,595
Ensembl chrNW_004936612:395,177...570,595 		JBrowse link
angiotensin III signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen ISO RGD PMID:11295571 RGD:1582124 NCBI chrNW_004936484:19,713,299...19,721,144
Ensembl chrNW_004936484:19,716,165...19,721,261 		JBrowse link
G Agtr1 angiotensin II receptor type 1 ISO RGD PMID:11295571 RGD:1582124 NCBI chrNW_004936519:6,831,096...6,873,977
Ensembl chrNW_004936519:6,831,096...6,873,985 		JBrowse link
G Agtr2 angiotensin II receptor type 2 ISO RGD PMID:11295571 RGD:1582124 NCBI chrNW_004936479:13,252,678...13,255,570
Ensembl chrNW_004936479:13,252,678...13,255,570 		JBrowse link
G Enpep glutamyl aminopeptidase ISO RGD PMID:15638741 PMID:16537183 RGD:1581649 RGD:1581742 NCBI chrNW_004936563:1,585,450...1,665,663
Ensembl chrNW_004936563:1,585,471...1,665,677 		JBrowse link
angiotensin III signaling pathway via AT1 receptor term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen ISO RGD PMID:11100981 RGD:1582152 NCBI chrNW_004936484:19,713,299...19,721,144
Ensembl chrNW_004936484:19,716,165...19,721,261 		JBrowse link
G Agtr1 angiotensin II receptor type 1 ISO RGD PMID:11100981 RGD:1582152 NCBI chrNW_004936519:6,831,096...6,873,977
Ensembl chrNW_004936519:6,831,096...6,873,985 		JBrowse link
angiotensin III signaling pathway via AT2 receptor term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen ISO RGD PMID:16380540 RGD:1582118 NCBI chrNW_004936484:19,713,299...19,721,144
Ensembl chrNW_004936484:19,716,165...19,721,261 		JBrowse link
G Agtr2 angiotensin II receptor type 2 ISO RGD PMID:16380540 RGD:1582118 NCBI chrNW_004936479:13,252,678...13,255,570
Ensembl chrNW_004936479:13,252,678...13,255,570 		JBrowse link
angiotensin IV signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen ISO RGD PMID:11282364 RGD:1582105 NCBI chrNW_004936484:19,713,299...19,721,144
Ensembl chrNW_004936484:19,716,165...19,721,261 		JBrowse link
G Anpep alanyl aminopeptidase, membrane ISO RGD PMID:15638741 PMID:16537183 RGD:1581649 RGD:1581742 NCBI chrNW_004936483:15,563,540...15,582,521
Ensembl chrNW_004936483:15,563,528...15,589,601 		JBrowse link
G Lnpep leucyl and cystinyl aminopeptidase ISO RGD PMID:11282364 PMID:12591177 RGD:1581864 RGD:1582105 NCBI chrNW_004936523:6,443,571...6,533,122
Ensembl chrNW_004936523:6,445,939...6,532,566 		JBrowse link
G Rnpep arginyl aminopeptidase ISO RGD PMID:16537183 RGD:1581649 NCBI chrNW_004936567:2,504,544...2,524,977
Ensembl chrNW_004936567:2,504,537...2,525,018 		JBrowse link
angiotensin signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen ISO RGD PMID:12676165 RGD:1566511 NCBI chrNW_004936484:19,713,299...19,721,144
Ensembl chrNW_004936484:19,716,165...19,721,261 		JBrowse link
arachidonic acid metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alox12b arachidonate 12-lipoxygenase, 12R type ISO SMPDB SMP:00075 NCBI chrNW_004936595:1,310,556...1,321,974
Ensembl chrNW_004936595:1,310,534...1,321,985 		JBrowse link
G Alox15 arachidonate 15-lipoxygenase ISO SMPDB SMP:00075 NCBI chrNW_004936677:3,232,183...3,241,307
Ensembl chrNW_004936677:3,232,183...3,241,253 		JBrowse link
G Alox15b arachidonate 15-lipoxygenase type B ISO SMPDB SMP:00075 NCBI chrNW_004936595:1,279,944...1,288,321
Ensembl chrNW_004936595:1,279,944...1,288,321 		JBrowse link
G Alox5 arachidonate 5-lipoxygenase ISO SMPDB SMP:00075 NCBI chrNW_004936554:7,807,914...7,848,691
Ensembl chrNW_004936554:7,808,355...7,867,931 		JBrowse link
G Cbr1 carbonyl reductase 1 ISO SMPDB SMP:00075 NCBI chrNW_004936500:6,569,708...6,591,266
Ensembl chrNW_004936500:6,458,721...6,591,928 		JBrowse link
G Ephx2 epoxide hydrolase 2 ISO SMPDB SMP:00075 NCBI chrNW_004936675:350,357...392,919
Ensembl chrNW_004936675:350,342...392,551 		JBrowse link
G Ggt1 gamma-glutamyltransferase 1 ISO SMPDB SMP:00075 NCBI chrNW_004936619:762,278...791,610 JBrowse link
G Gpx1 glutathione peroxidase 1 ISO SMPDB SMP:00075 NCBI chrNW_004936529:997,943...999,123
Ensembl chrNW_004936529:998,150...998,987 		JBrowse link
G LOC101973029 cytochrome P450 2E1 ISO SMPDB SMP:00075 NCBI chrNW_004936486:19,691,822...19,702,684
Ensembl chrNW_004936486:19,691,822...19,702,102 		JBrowse link
G LOC101973126 cytochrome P450 2U1 ISO SMPDB SMP:00075 NCBI chrNW_004936818:650,593...672,349
Ensembl chrNW_004936818:650,589...672,355 		JBrowse link
G Lta4h leukotriene A4 hydrolase ISO SMPDB SMP:00075 NCBI chrNW_004936507:12,082,373...12,120,078
Ensembl chrNW_004936507:12,082,068...12,120,091 		JBrowse link
G Ltc4s leukotriene C4 synthase ISO SMPDB SMP:00075 NCBI chrNW_004936739:975,494...978,426
Ensembl chrNW_004936739:975,493...978,482 		JBrowse link
G Pla2g4b phospholipase A2 group IVB ISO SMPDB SMP:00075 NCBI chrNW_004936471:5,145,736...5,153,930
Ensembl chrNW_004936471:5,145,502...5,153,498 		JBrowse link
G Prxl2b peroxiredoxin like 2B ISO SMPDB SMP:00075 NCBI chrNW_004936737:998,313...1,000,757
Ensembl chrNW_004936737:998,186...1,000,764 		JBrowse link
G Ptgds prostaglandin D2 synthase ISO SMPDB SMP:00075 NCBI chrNW_004936669:961,246...964,584
Ensembl chrNW_004936669:961,034...965,136 		JBrowse link
G Ptges prostaglandin E synthase ISO SMPDB SMP:00075 NCBI chrNW_004936487:16,959,263...16,968,909
Ensembl chrNW_004936487:16,959,231...16,968,922 		JBrowse link
G Ptgis prostaglandin I2 synthase ISO SMPDB SMP:00075 NCBI chrNW_004936514:4,775,884...4,814,574
Ensembl chrNW_004936514:4,791,031...4,812,027 		JBrowse link
G Ptgs1 prostaglandin-endoperoxide synthase 1 ISO SMPDB SMP:00075 NCBI chrNW_004936487:10,745,465...10,758,812
Ensembl chrNW_004936487:10,745,327...10,758,823 		JBrowse link
G Ptgs2 prostaglandin-endoperoxide synthase 2 ISO SMPDB SMP:00075 NCBI chrNW_004936481:3,821,564...3,828,086 JBrowse link
G Tbxas1 thromboxane A synthase 1 ISO SMPDB SMP:00075 NCBI chrNW_004936592:4,038,163...4,192,772
Ensembl chrNW_004936592:4,038,074...4,192,808 		JBrowse link
arginine and proline metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh4a1 aldehyde dehydrogenase 4 family member A1 ISO SMPDB SMP:00020 NCBI chrNW_004936474:5,217,601...5,246,718
Ensembl chrNW_004936474:5,218,686...5,246,664 		JBrowse link
G Asl argininosuccinate lyase ISO SMPDB SMP:00020 NCBI chrNW_004936543:7,688,788...7,699,842
Ensembl chrNW_004936543:7,688,741...7,699,851 		JBrowse link
G Ass1 argininosuccinate synthase 1 ISO SMPDB SMP:00020 NCBI chrNW_004936487:17,482,307...17,527,407
Ensembl chrNW_004936487:17,486,826...17,527,435 		JBrowse link
G Ckb creatine kinase B ISO SMPDB SMP:00020 NCBI chrNW_004936621:1,612,398...1,615,821
Ensembl chrNW_004936621:1,612,393...1,615,822 		JBrowse link
G Cps1 carbamoyl-phosphate synthase 1 ISO SMPDB SMP:00020 NCBI chrNW_004936586:5,739,038...5,850,317
Ensembl chrNW_004936586:5,739,337...5,850,312 		JBrowse link
G Dao D-amino acid oxidase ISO SMPDB SMP:00020 NCBI chrNW_004936769:744,862...758,086
Ensembl chrNW_004936769:744,864...758,452 		JBrowse link
G Eprs1 glutamyl-prolyl-tRNA synthetase 1 ISO SMPDB SMP:00020 NCBI chrNW_004936650:2,145,614...2,219,812
Ensembl chrNW_004936650:2,145,607...2,220,019 		JBrowse link
G Gamt guanidinoacetate N-methyltransferase ISO SMPDB SMP:00020 NCBI chrNW_004936588:721,436...724,475
Ensembl chrNW_004936588:721,313...724,524 		JBrowse link
G Gatm glycine amidinotransferase ISO SMPDB SMP:00020 NCBI chrNW_004936471:8,017,611...8,032,703
Ensembl chrNW_004936471:8,017,603...8,032,703 		JBrowse link
G Glud1 glutamate dehydrogenase 1 ISO SMPDB SMP:00020 NCBI chrNW_004936601:5,415,857...5,435,964 JBrowse link
G Got1 glutamic-oxaloacetic transaminase 1 ISO SMPDB SMP:00020 NCBI chrNW_004936636:617,376...640,424
Ensembl chrNW_004936636:617,356...640,932 		JBrowse link
G Nos1 nitric oxide synthase 1 ISO SMPDB SMP:00020 NCBI chrNW_004936558:5,162,471...5,302,488
Ensembl chrNW_004936558:5,233,459...5,301,414 		JBrowse link
G Oat ornithine aminotransferase ISO SMPDB SMP:00020 NCBI chrNW_004936486:12,723,363...12,743,367
Ensembl chrNW_004936486:12,723,305...12,743,422 		JBrowse link
G Otc ornithine transcarbamylase ISO SMPDB SMP:00020 NCBI chrNW_004936502:5,234,253...5,291,891
Ensembl chrNW_004936502:5,234,253...5,291,891 		JBrowse link
G P4ha3 prolyl 4-hydroxylase subunit alpha 3 ISO SMPDB SMP:00020 NCBI chrNW_004936498:3,313,572...3,346,888
Ensembl chrNW_004936498:3,313,586...3,346,888 		JBrowse link
G Pycr2 pyrroline-5-carboxylate reductase 2 ISO SMPDB SMP:00020 NCBI chrNW_004936526:2,721,579...2,726,699
Ensembl chrNW_004936526:2,720,521...2,726,762 		JBrowse link
G Rars2 arginyl-tRNA synthetase 2, mitochondrial ISO SMPDB SMP:00020 NCBI chrNW_004936510:4,281,847...4,343,271
Ensembl chrNW_004936510:4,281,626...4,343,276 		JBrowse link
G Slc25a15 solute carrier family 25 member 15 ISO SMPDB SMP:00020 NCBI chrNW_004936565:5,113,625...5,133,318
Ensembl chrNW_004936565:5,115,600...5,133,345 		JBrowse link
aryl hydrocarbon receptor signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahr aryl hydrocarbon receptor ISO RGD PMID:10639156 RGD:1300277 NCBI chrNW_004936546:3,737,908...3,783,492
Ensembl chrNW_004936546:3,737,851...3,783,588 		JBrowse link
G Arnt aryl hydrocarbon receptor nuclear translocator ISO RGD PMID:1317062 RGD:41410437 NCBI chrNW_004936580:1,038,420...1,093,319
Ensembl chrNW_004936580:1,036,973...1,082,984 		JBrowse link
G Arnt2 aryl hydrocarbon receptor nuclear translocator 2 ISO RGD PMID:12859947 RGD:631760 NCBI chrNW_004936483:20,041,712...20,218,853
Ensembl chrNW_004936483:20,041,657...20,218,965 		JBrowse link
beta-alanine metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abat 4-aminobutyrate aminotransferase ISO SMPDB SMP:00007 NCBI chrNW_004936530:7,543,743...7,621,392
Ensembl chrNW_004936530:7,543,682...7,622,667 		JBrowse link
G Aldh2 aldehyde dehydrogenase 2 family member ISO SMPDB SMP:00007 NCBI chrNW_004936558:4,362,693...4,387,705
Ensembl chrNW_004936558:4,362,654...4,390,414 		JBrowse link
G Aldh6a1 aldehyde dehydrogenase 6 family member A1 ISO SMPDB SMP:00007 NCBI chrNW_004936488:3,320,357...3,340,463
Ensembl chrNW_004936488:3,318,422...3,340,626 		JBrowse link
G Cndp1 carnosine dipeptidase 1 ISO SMPDB SMP:00007 NCBI chrNW_004936616:3,955,847...3,984,021 JBrowse link
G Dpyd dihydropyrimidine dehydrogenase ISO SMPDB SMP:00007 NCBI chrNW_004936537:1,660,461...2,439,305
Ensembl chrNW_004936537:1,660,477...2,439,273 		JBrowse link
G Dpys dihydropyrimidinase ISO SMPDB SMP:00007 NCBI chrNW_004936470:39,564,431...39,637,394
Ensembl chrNW_004936470:39,564,335...39,637,544 		JBrowse link
G Gad1 glutamate decarboxylase 1 ISO SMPDB SMP:00007 NCBI chrNW_004936509:1,160,559...1,201,037
Ensembl chrNW_004936509:1,161,094...1,201,576 		JBrowse link
G LOC101973421 amine oxidase copper containing 3 ISO SMPDB SMP:00007 NCBI chrNW_004936490:17,549,836...17,564,867 JBrowse link
G Upb1 beta-ureidopropionase 1 ISO SMPDB SMP:00007 NCBI chrNW_004936619:668,380...713,720
Ensembl chrNW_004936619:668,351...696,306 		JBrowse link
bile acid biosynthetic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acox2 acyl-CoA oxidase 2 ISO SMPDB SMP:00035 NCBI chrNW_004936473:2,494,568...2,525,956
Ensembl chrNW_004936473:2,494,554...2,526,787 		JBrowse link
G Akr1d1 aldo-keto reductase family 1 member D1 ISO SMPDB SMP:00035 NCBI chrNW_004936592:2,486,219...2,522,796
Ensembl chrNW_004936592:2,491,681...2,522,796 		JBrowse link
G Amacr alpha-methylacyl-CoA racemase ISO SMPDB SMP:00035 NCBI chrNW_004936518:7,072,436...7,088,927
Ensembl chrNW_004936518:7,072,403...7,088,929 		JBrowse link
G Baat bile acid-CoA:amino acid N-acyltransferase ISO SMPDB SMP:00035 NCBI chrNW_004936524:9,536,032...9,544,901
Ensembl chrNW_004936524:9,536,010...9,545,076 		JBrowse link
G Ch25h cholesterol 25-hydroxylase ISO SMPDB SMP:00035 NCBI chrNW_004936601:5,015,922...5,016,942
Ensembl chrNW_004936601:5,015,219...5,160,908 		JBrowse link
G Hsd17b4 hydroxysteroid 17-beta dehydrogenase 4 ISO SMPDB SMP:00035 NCBI chrNW_004936715:2,357,215...2,446,601
Ensembl chrNW_004936715:2,357,274...2,446,271 		JBrowse link
G Hsd3b7 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 ISO SMPDB SMP:00035 NCBI chrNW_004936501:13,363,630...13,367,553
Ensembl chrNW_004936501:13,363,576...13,367,553 		JBrowse link
G LOC101955077 cytochrome P450 7B1 ISO SMPDB SMP:00035 NCBI chrNW_004936496:8,900,320...9,072,109
Ensembl chrNW_004936496:8,899,965...9,072,089 		JBrowse link
G LOC101961079 cholesterol 24-hydroxylase ISO SMPDB SMP:00035 NCBI chrNW_004936604:3,451,853...3,490,688
Ensembl chrNW_004936604:3,451,842...3,491,159 		JBrowse link
G LOC101963150 sterol 26-hydroxylase, mitochondrial ISO SMPDB SMP:00035 NCBI chrNW_004936569:1,213,700...1,250,181
Ensembl chrNW_004936569:1,213,573...1,250,589 		JBrowse link
G LOC101970910 cytochrome P450 7A1 ISO SMPDB SMP:00035 NCBI chrNW_004936496:4,599,138...4,605,653
Ensembl chrNW_004936496:4,599,138...4,605,653 		JBrowse link
G LOC101972335 24-hydroxycholesterol 7-alpha-hydroxylase ISO SMPDB SMP:00035 NCBI chrNW_004936476:13,697,598...13,819,362
Ensembl chrNW_004936476:13,697,583...13,819,109 		JBrowse link
G LOC101977223 7-alpha-hydroxycholest-4-en-3-one 12-alpha-hydroxylase ISO SMPDB SMP:00035 NCBI chrNW_004936695:2,263,868...2,265,373
Ensembl chrNW_004936695:2,263,868...2,265,373 		JBrowse link
G Scp2 sterol carrier protein 2 ISO SMPDB SMP:00035 NCBI chrNW_004936522:8,004,503...8,110,995
Ensembl chrNW_004936522:8,005,442...8,110,889 		JBrowse link
G Slc27a5 solute carrier family 27 member 5 ISO SMPDB SMP:00035 NCBI chrNW_004937062:90,217...98,562
Ensembl chrNW_004937062:89,664...98,113 		JBrowse link
biotin metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hlcs holocarboxylase synthetase ISO SMPDB SMP:00066 NCBI chrNW_004936500:5,827,213...5,976,457
Ensembl chrNW_004936500:5,827,299...5,975,439 		JBrowse link
G LOC101961662 biotinidase ISO SMPDB SMP:00066 NCBI chrNW_004936473:2,787,386...2,823,014 JBrowse link
G Spcs1 signal peptidase complex subunit 1 ISO SMPDB SMP:00066 NCBI chrNW_004936473:3,495,964...3,497,573
Ensembl chrNW_004936473:3,496,035...3,497,787 		JBrowse link
butanoate metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acads acyl-CoA dehydrogenase short chain ISO SMPDB SMP:00073 NCBI chrNW_004936668:257,214...272,089
Ensembl chrNW_004936668:254,595...272,118 		JBrowse link
G Acat1 acetyl-CoA acetyltransferase 1 ISO SMPDB SMP:00073 NCBI chrNW_004936551:594,647...626,016
Ensembl chrNW_004936551:591,695...626,056 		JBrowse link
G Echs1 enoyl-CoA hydratase, short chain 1 ISO SMPDB SMP:00073 NCBI chrNW_004936486:19,488,619...19,496,583
Ensembl chrNW_004936486:19,488,554...19,496,575 		JBrowse link
G Hadh hydroxyacyl-CoA dehydrogenase ISO SMPDB SMP:00073 NCBI chrNW_004936818:575,272...623,496
Ensembl chrNW_004936818:575,023...623,568 		JBrowse link
G Hmgcl 3-hydroxy-3-methylglutaryl-CoA lyase ISO SMPDB SMP:00073 NCBI chrNW_004936474:8,955,216...8,971,078
Ensembl chrNW_004936474:8,954,379...8,971,132 		JBrowse link
G Hmgcs2 3-hydroxy-3-methylglutaryl-CoA synthase 2 ISO SMPDB SMP:00073 NCBI chrNW_004936627:4,451,847...4,473,163
Ensembl chrNW_004936627:4,451,823...4,473,223 		JBrowse link
G Oxct1 3-oxoacid CoA-transferase 1 ISO SMPDB SMP:00073 NCBI chrNW_004936518:924,840...1,057,201 JBrowse link
cardiolipin biosynthetic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crls1 cardiolipin synthase 1 ISO RGD PMID:24769127 RGD:10400850 NCBI chrNW_004936485:13,050,401...13,070,197 JBrowse link
G Pgs1 phosphatidylglycerophosphate synthase 1 ISO RGD PMID:24769127 RGD:10400850 NCBI chrNW_004936594:2,934,450...2,989,328
Ensembl chrNW_004936594:2,951,150...2,989,347 		JBrowse link
G Ptpmt1 protein tyrosine phosphatase mitochondrial 1 ISO RGD PMID:24769127 RGD:10400850 NCBI chrNW_004936562:1,680,131...1,689,125
Ensembl chrNW_004936562:1,680,164...1,690,062 		JBrowse link
G Tamm41 TAM41 mitochondrial translocator assembly and maintenance homolog ISO RGD PMID:24769127 RGD:10400850 NCBI chrNW_004936602:1,694,881...1,726,616 JBrowse link
cardiolipin metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ckmt1a creatine kinase, mitochondrial 1A ISO RGD PMID:24769127 RGD:10400850 NCBI chrNW_004936471:6,754,514...6,760,025 JBrowse link
G Nme4 NME/NM23 nucleoside diphosphate kinase 4 ISO RGD PMID:24769127 RGD:10400850 NCBI chrNW_004936501:553,931...557,744 JBrowse link
G Tafazzin tafazzin, phospholipid-lysophospholipid transacylase ISO RGD PMID:24769127 RGD:10400850 NCBI chrNW_004936809:1,160,265...1,168,956
Ensembl chrNW_004936809:1,160,247...1,171,097 		JBrowse link
carnitine biosynthetic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh9a1 aldehyde dehydrogenase 9 family member A1 ISO SMPDB SMP:00465 NCBI chrNW_004936481:19,630,045...19,650,009 JBrowse link
G Bbox1 gamma-butyrobetaine hydroxylase 1 ISO SMPDB SMP:00465 NCBI chrNW_004936540:6,048,481...6,113,627
Ensembl chrNW_004936540:6,048,472...6,153,731 		JBrowse link
G Setd7 SET domain containing 7, histone lysine methyltransferase ISO SMPDB SMP:00465 NCBI chrNW_004936535:8,094,479...8,143,108
Ensembl chrNW_004936535:8,094,178...8,137,580 		JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 ISO SMPDB SMP:00465 NCBI chrNW_004936741:1,849,239...1,877,724
Ensembl chrNW_004936741:1,849,609...1,877,727 		JBrowse link
G Tmlhe trimethyllysine hydroxylase, epsilon ISO SMPDB SMP:00465 NCBI chrNW_004936958:64,713...113,627 JBrowse link
catecholamine biosynthetic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbh dopamine beta-hydroxylase ISO SMPDB SMP:00012 NCBI chrNW_004936669:3,302,014...3,326,233
Ensembl chrNW_004936669:3,301,802...3,320,643 		JBrowse link
G Ddc dopa decarboxylase ISO SMPDB SMP:00012 NCBI chrNW_004936686:1,322,153...1,405,434
Ensembl chrNW_004936686:1,301,207...1,405,384 		JBrowse link
G Pnmt phenylethanolamine N-methyltransferase ISO SMPDB SMP:00012 NCBI chrNW_004936490:14,858,682...14,861,614
Ensembl chrNW_004936490:14,858,603...14,865,321 		JBrowse link
G Th tyrosine hydroxylase ISO SMPDB SMP:00012 NCBI chrNW_004936794:478,651...486,887
Ensembl chrNW_004936794:478,614...487,061 		JBrowse link
cholesterol biosynthetic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat2 acetyl-CoA acetyltransferase 2 ISO SMPDB
RGD		 PMID:16876788 RGD:2316857 SMP:00023 NCBI chrNW_004936489:11,255,871...11,273,848
Ensembl chrNW_004936489:11,255,871...11,283,216 		JBrowse link
G Dhcr24 24-dehydrocholesterol reductase ISO SMPDB
RGD		 PMID:12668600 PMID:16876788 RGD:2316857 RGD:2316868 SMP:00023 NCBI chrNW_004936522:6,423,561...6,447,363
Ensembl chrNW_004936522:6,423,561...6,444,814 		JBrowse link
G Ebp EBP cholestenol delta-isomerase ISO SMPDB
RGD		 PMID:12668600 PMID:16876788 RGD:2316857 RGD:2316868 SMP:00023 NCBI chrNW_004936721:508,716...515,968
Ensembl chrNW_004936721:509,374...515,918 		JBrowse link
G Fdft1 farnesyl-diphosphate farnesyltransferase 1 ISO SMPDB
RGD		 PMID:16440058 PMID:16876788 RGD:1626611 RGD:2316857 SMP:00023 NCBI chrNW_004936628:3,599,435...3,600,061 JBrowse link
G Fdps farnesyl diphosphate synthase ISO SMPDB
RGD		 PMID:16876788 RGD:2316857 SMP:00023 NCBI chrNW_004936580:4,799,354...4,808,406 JBrowse link
G Ggps1 geranylgeranyl diphosphate synthase 1 ISO SMPDB SMP:00023 NCBI chrNW_004936484:17,104,437...17,115,897
Ensembl chrNW_004936484:17,104,750...17,110,059 		JBrowse link
G Hmgcr 3-hydroxy-3-methylglutaryl-CoA reductase ISO SMPDB
RGD		 PMID:16876788 RGD:2316857 SMP:00023 NCBI chrNW_004936549:1,378,536...1,400,501
Ensembl chrNW_004936549:1,378,736...1,400,532 		JBrowse link
G Hmgcs1 3-hydroxy-3-methylglutaryl-CoA synthase 1 ISO SMPDB
RGD		 PMID:16876788 RGD:2316857 SMP:00023 NCBI chrNW_004936480:18,862,288...18,882,614
Ensembl chrNW_004936480:18,862,238...18,882,616 		JBrowse link
G Hsd17b7 hydroxysteroid 17-beta dehydrogenase 7 ISO SMPDB SMP:00023 NCBI chrNW_004936831:951,603...976,159
Ensembl chrNW_004936831:951,562...977,208 		JBrowse link
G Idi1 isopentenyl-diphosphate delta isomerase 1 ISO SMPDB
RGD		 PMID:16876788 RGD:2316857 SMP:00023 NCBI chrNW_004936484:13,054,155...13,061,935 JBrowse link
G Lbr lamin B receptor ISO RGD PMID:12668600 PMID:16876788 RGD:2316857 RGD:2316868 NCBI chrNW_004936526:2,254,463...2,282,785
Ensembl chrNW_004936526:2,254,449...2,282,785 		JBrowse link
G LOC101955024 lanosterol 14-alpha demethylase ISO RGD
SMPDB		 PMID:7581240 PMID:12668600 PMID:16876788 RGD:2316857 RGD:2316868 RGD:2316902 SMP:00023 NCBI chrNW_004936621:2,209,255...2,232,404
Ensembl chrNW_004936621:2,209,199...2,232,531 		JBrowse link
G LOC101971285 7-dehydrocholesterol reductase ISO RGD PMID:9831636 PMID:12668600 PMID:16876788 RGD:2316857 RGD:2316868 RGD:2316918 NCBI chrNW_004936794:1,432,379...1,468,966 JBrowse link
G Lss lanosterol synthase ISO RGD
SMPDB		 PMID:1429550 PMID:16440058 PMID:16876788 RGD:1626611 RGD:2316857 RGD:2316919 SMP:00023 NCBI chrNW_004936778:323,120...351,100
Ensembl chrNW_004936778:323,014...351,102 		JBrowse link
G Msmo1 methylsterol monooxygenase 1 ISO SMPDB SMP:00023 NCBI chrNW_004936555:664,171...678,082
Ensembl chrNW_004936555:664,158...678,208 		JBrowse link
G Mvd mevalonate diphosphate decarboxylase ISO SMPDB
RGD		 PMID:16876788 RGD:2316857 SMP:00023 NCBI chrNW_004936641:1,030,465...1,035,967
Ensembl chrNW_004936641:1,030,595...1,035,954 		JBrowse link
G Mvk mevalonate kinase ISO SMPDB
RGD		 PMID:16876788 RGD:2316857 SMP:00023 NCBI chrNW_004936769:1,274,595...1,295,186
Ensembl chrNW_004936769:1,274,540...1,298,178 		JBrowse link
G Nsdhl NAD(P) dependent steroid dehydrogenase-like ISO SMPDB
RGD		 PMID:12668600 PMID:16876788 RGD:2316857 RGD:2316868 SMP:00023 NCBI chrNW_004936714:246,574...273,930
Ensembl chrNW_004936714:246,551...273,912 		JBrowse link
G Pmvk phosphomevalonate kinase ISO SMPDB
RGD		 PMID:16876788 RGD:2316857 SMP:00023 NCBI chrNW_004936580:4,473,554...4,482,396
Ensembl chrNW_004936580:4,473,359...4,482,631 		JBrowse link
G Sc5d sterol-C5-desaturase ISO RGD
SMPDB		 PMID:7961720 PMID:12668600 PMID:16876788 RGD:2316857 RGD:2316868 RGD:2316911 SMP:00023 NCBI chrNW_004936542:6,046,425...6,062,825
Ensembl chrNW_004936542:6,046,390...6,059,074 		JBrowse link
G Soat1 sterol O-acyltransferase 1 ISO SMPDB SMP:00023 NCBI chrNW_004936481:9,614,605...9,669,705
Ensembl chrNW_004936481:9,616,850...9,669,705 		JBrowse link
G Sqle squalene epoxidase ISO SMPDB
RGD		 PMID:16876788 RGD:2316857 SMP:00023 NCBI chrNW_004936470:22,726,793...22,752,429
Ensembl chrNW_004936470:22,725,888...22,752,500 		JBrowse link
G Tm7sf2 transmembrane 7 superfamily member 2 ISO SMPDB SMP:00023 NCBI chrNW_004936599:4,253,725...4,258,198
Ensembl chrNW_004936599:4,253,735...4,258,071 		JBrowse link
choline metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahcy adenosylhomocysteinase ISO SMPDB SMP:00123 NCBI chrNW_004936561:6,314,797...6,333,961
Ensembl chrNW_004936561:6,314,705...6,334,439 		JBrowse link
G Aldh7a1 aldehyde dehydrogenase 7 family member A1 ISO SMPDB SMP:00123 NCBI chrNW_004936575:6,467,224...6,506,052
Ensembl chrNW_004936575:6,467,340...6,506,006 		JBrowse link
G Chdh choline dehydrogenase ISO SMPDB SMP:00123 NCBI chrNW_004936473:4,479,942...4,512,369
Ensembl chrNW_004936473:4,482,170...4,506,763 		JBrowse link
G LOC101972215 betaine--homocysteine S-methyltransferase 1 ISO SMPDB SMP:00123 NCBI chrNW_004936549:6,938,100...6,956,380
Ensembl chrNW_004936549:6,938,092...6,957,363 		JBrowse link
G Mat2a methionine adenosyltransferase 2A ISO SMPDB SMP:00123 NCBI chrNW_004936712:1,710,513...1,717,339
Ensembl chrNW_004936712:1,709,716...1,717,499 		JBrowse link
G Mat2b methionine adenosyltransferase 2 non-catalytic beta subunit ISO SMPDB SMP:00123 NCBI chrNW_004936515:544,218...561,014
Ensembl chrNW_004936515:544,037...561,182 		JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase ISO SMPDB SMP:00123 NCBI chrNW_004936484:16,087,924...16,180,089
Ensembl chrNW_004936484:16,087,923...16,180,148 		JBrowse link
G Pemt phosphatidylethanolamine N-methyltransferase ISO SMPDB SMP:00123 NCBI chrNW_004936741:1,131,792...1,207,460
Ensembl chrNW_004936741:1,128,616...1,207,499 		JBrowse link
G Sardh sarcosine dehydrogenase ISO RGD PMID:9839943 RGD:634034 NCBI chrNW_004936669:3,244,302...3,297,906
Ensembl chrNW_004936669:3,243,762...3,297,905 		JBrowse link
citric acid cycle pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aco2 aconitase 2 ISO SMPDB
RGD		 PMID:9712727 RGD:2306877 SMP:00057 NCBI chrNW_004936492:407,482...452,538
Ensembl chrNW_004936492:407,482...452,537 		JBrowse link
G Cs citrate synthase ISO RGD
SMPDB		 PMID:938457 PMID:9712727 RGD:2306828 RGD:2306877 SMP:00057 NCBI chrNW_004936646:676,926...704,988
Ensembl chrNW_004936646:678,307...692,777 		JBrowse link
G Dlat dihydrolipoamide S-acetyltransferase ISO SMPDB SMP:00057 NCBI chrNW_004936612:2,395,452...2,437,592
Ensembl chrNW_004936612:2,393,071...2,437,522 		JBrowse link
G Dld dihydrolipoamide dehydrogenase ISO SMPDB
RGD		 PMID:10672230 RGD:2306878 SMP:00057 NCBI chrNW_004936479:16,247,230...16,271,597
Ensembl chrNW_004936479:16,243,829...16,271,616 		JBrowse link
G Dlst dihydrolipoamide S-succinyltransferase ISO SMPDB
RGD		 PMID:10672230 RGD:2306878 SMP:00057 NCBI chrNW_004936488:4,038,985...4,061,071
Ensembl chrNW_004936488:4,038,985...4,061,087 		JBrowse link
G Fh fumarate hydratase ISO SMPDB
RGD		 PMID:938457 RGD:2306828 SMP:00057 NCBI chrNW_004936526:8,936,096...8,965,155
Ensembl chrNW_004936526:8,935,991...8,965,367 		JBrowse link
G Idh3a isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha ISO RGD
SMPDB		 PMID:938457 RGD:2306828 SMP:00057 NCBI chrNW_004936471:36,823,003...36,842,576
Ensembl chrNW_004936471:36,822,971...36,842,610 		JBrowse link
G Idh3b isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta ISO RGD
SMPDB		 PMID:938457 RGD:2306828 SMP:00057 NCBI chrNW_004936485:16,033,287...16,038,097
Ensembl chrNW_004936485:16,033,128...16,042,821 		JBrowse link
G Idh3g isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma ISO SMPDB
RGD		 PMID:938457 RGD:2306828 SMP:00057 NCBI chrNW_004936809:666,231...675,279
Ensembl chrNW_004936809:666,337...675,214 		JBrowse link
G Mdh2 malate dehydrogenase 2 ISO SMPDB
RGD		 PMID:938457 RGD:2306828 SMP:00057 NCBI chrNW_004936543:2,194,074...2,208,626
Ensembl chrNW_004936543:2,194,032...2,208,651 		JBrowse link
G Mpc1 mitochondrial pyruvate carrier 1 ISO SMPDB SMP:00057 NCBI chrNW_004936489:16,179,321...16,181,991
Ensembl chrNW_004936489:16,179,810...16,184,020 		JBrowse link
G Ogdh oxoglutarate dehydrogenase ISO SMPDB
RGD		 PMID:9712727 PMID:10672230 RGD:2306877 RGD:2306878 SMP:00057 NCBI chrNW_004936478:19,506,845...19,584,411
Ensembl chrNW_004936478:19,506,154...19,583,364 		JBrowse link
G Pc pyruvate carboxylase ISO SMPDB SMP:00057 NCBI chrNW_004936599:2,677,770...2,793,033
Ensembl chrNW_004936599:2,677,583...2,793,197 		JBrowse link
G Pdha1 pyruvate dehydrogenase E1 subunit alpha 1 ISO SMPDB SMP:00057 NCBI chrNW_004936844:889,720...906,631
Ensembl chrNW_004936844:889,635...909,586 		JBrowse link
G Pdhb pyruvate dehydrogenase E1 subunit beta ISO SMPDB SMP:00057 NCBI chrNW_004936473:2,580,642...2,586,266
Ensembl chrNW_004936473:2,580,618...2,586,266 		JBrowse link
G Sdha succinate dehydrogenase complex flavoprotein subunit A ISO SMPDB
RGD		 PMID:16143825 RGD:2306881 SMP:00057 NCBI chrNW_004936815:1,148,963...1,167,585
Ensembl chrNW_004936815:1,148,963...1,167,568 		JBrowse link
G Sdhb succinate dehydrogenase complex iron sulfur subunit B ISO SMPDB
RGD		 PMID:16143825 RGD:2306881 SMP:00057 NCBI chrNW_004936474:3,993,224...4,021,359
Ensembl chrNW_004936474:3,990,778...4,021,423 		JBrowse link
G Sdhc succinate dehydrogenase complex subunit C ISO SMPDB
RGD		 PMID:16143825 RGD:2306881 SMP:00057 NCBI chrNW_004936903:592,641...636,845
Ensembl chrNW_004936903:601,355...636,092 		JBrowse link
G Sdhd succinate dehydrogenase complex subunit D ISO SMPDB
RGD		 PMID:16143825 RGD:2306881 SMP:00057 NCBI chrNW_004936612:2,357,336...2,369,204 JBrowse link
G Sucla2 succinate-CoA ligase ADP-forming subunit beta ISO RGD PMID:17403370 RGD:2306915 NCBI chrNW_004936565:1,313,150...1,355,693
Ensembl chrNW_004936565:1,313,150...1,355,693 		JBrowse link
G Suclg1 succinate-CoA ligase GDP/ADP-forming subunit alpha ISO SMPDB
RGD		 PMID:17403370 RGD:2306915 SMP:00057 NCBI chrNW_004936650:3,278,769...3,313,537
Ensembl chrNW_004936650:3,275,019...3,313,599 		JBrowse link
G Suclg2 succinate-CoA ligase GDP-forming subunit beta ISO RGD
SMPDB		 PMID:17403370 RGD:2306915 SMP:00057 NCBI chrNW_004936603:243,113...378,526
Ensembl chrNW_004936603:243,113...378,528 		JBrowse link
cortisol biosynthetic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fdx1 ferredoxin 1 ISO RGD PMID:18821018 RGD:2325883 NCBI chrNW_004936612:3,878,179...3,905,678
Ensembl chrNW_004936612:3,874,748...3,905,825 		JBrowse link
G Fdxr ferredoxin reductase ISO RGD PMID:18821018 RGD:2325883 NCBI chrNW_004936594:215,165...223,715
Ensembl chrNW_004936594:215,155...223,771 		JBrowse link
G LOC101965545 NADPH--cytochrome P450 reductase ISO RGD PMID:17926129 RGD:4892309 NCBI chrNW_004936543:2,275,981...2,327,931
Ensembl chrNW_004936543:2,274,059...2,328,008 		JBrowse link
G LOC101970767 steroid 17-alpha-hydroxylase/17,20 lyase ISO RGD PMID:17926129 RGD:4892309 NCBI chrNW_004936600:3,097,620...3,102,713
Ensembl chrNW_004936600:3,097,638...3,102,713 		JBrowse link
G LOC101975820 cholesterol side-chain cleavage enzyme, mitochondrial ISO RGD PMID:17926129 RGD:4892309 NCBI chrNW_004936471:33,367,810...33,380,764
Ensembl chrNW_004936471:33,367,810...33,380,764 		JBrowse link
G LOC101977414 steroid 21-hydroxylase ISO RGD PMID:15583024 RGD:4889549 NCBI chrNW_004936727:1,550,783...1,553,327
Ensembl chrNW_004936727:1,550,783...1,553,327 		JBrowse link
G Star steroidogenic acute regulatory protein ISO RGD PMID:18821018 RGD:2325883 NCBI chrNW_004936710:1,523,289...1,530,181
Ensembl chrNW_004936710:1,523,355...1,529,672 		JBrowse link
creatine metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ckm creatine kinase, M-type ISO RGD PMID:12069495 RGD:1359082 NCBI chrNW_004936706:1,792,298...1,801,063
Ensembl chrNW_004936706:1,790,958...1,801,139 		JBrowse link
G Gamt guanidinoacetate N-methyltransferase ISO RGD PMID:12069495 RGD:1359082 NCBI chrNW_004936588:721,436...724,475
Ensembl chrNW_004936588:721,313...724,524 		JBrowse link
G Gatm glycine amidinotransferase ISO RGD PMID:8021264 RGD:70746 NCBI chrNW_004936471:8,017,611...8,032,703
Ensembl chrNW_004936471:8,017,603...8,032,703 		JBrowse link
G Slc6a8 solute carrier family 6 member 8 ISO RGD PMID:12069495 RGD:1359082 NCBI chrNW_004936809:571,234...578,298 JBrowse link
cyclooxygenase mediated pathway of arachidonic acid metabolism term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa1 annexin A1 ISO RGD PMID:18761105 RGD:8552898 NCBI chrNW_004936503:9,124,314...9,142,372
Ensembl chrNW_004936503:9,124,264...9,142,413 		JBrowse link
G Mknk1 MAPK interacting serine/threonine kinase 1 ISO RGD PMID:18761105 RGD:8552898 NCBI chrNW_004936474:27,568,325...27,611,315 JBrowse link
G Pla2g4a phospholipase A2 group IVA ISO RGD PMID:18761105 PMID:22679221 RGD:8552712 RGD:8552898 NCBI chrNW_004936481:3,559,377...3,689,797
Ensembl chrNW_004936481:3,559,358...3,689,833 		JBrowse link
G Ptgs1 prostaglandin-endoperoxide synthase 1 ISO RGD PMID:22679221 PMID:23063076 RGD:8552701 RGD:8552712 NCBI chrNW_004936487:10,745,465...10,758,812
Ensembl chrNW_004936487:10,745,327...10,758,823 		JBrowse link
G Ptgs2 prostaglandin-endoperoxide synthase 2 ISO RGD PMID:22679221 PMID:23063076 RGD:8552701 RGD:8552712 NCBI chrNW_004936481:3,821,564...3,828,086 JBrowse link
G Vim vimentin ISO RGD PMID:18761105 RGD:8552898 NCBI chrNW_004936520:10,051,692...10,059,324
Ensembl chrNW_004936520:10,052,012...10,059,182 		JBrowse link
cysteine metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cars1 cysteinyl-tRNA synthetase 1 ISO SMPDB SMP:00013 NCBI chrNW_004936794:1,115,111...1,165,286
Ensembl chrNW_004936794:1,115,257...1,165,270 		JBrowse link
G Cbs cystathionine beta-synthase ISO RGD PMID:9359866 RGD:1359024 NCBI chrNW_004936500:976,043...1,003,559
Ensembl chrNW_004936500:987,128...1,003,388 		JBrowse link
G Cdo1 cysteine dioxygenase type 1 ISO SMPDB SMP:00013 NCBI chrNW_004936742:981,863...993,271
Ensembl chrNW_004936742:979,368...993,257 		JBrowse link
G Cth cystathionine gamma-lyase ISO RGD
SMPDB		 PMID:9359866 RGD:1359024 SMP:00013 NCBI chrNW_004936591:1,619,446...1,643,667
Ensembl chrNW_004936591:1,619,446...1,643,665 		JBrowse link
G Ctns cystinosin, lysosomal cystine transporter ISO SMPDB SMP:00013 NCBI chrNW_004936677:342,964...360,890
Ensembl chrNW_004936677:343,042...360,879 		JBrowse link
G Gclc glutamate-cysteine ligase catalytic subunit ISO SMPDB SMP:00013 NCBI chrNW_004936476:7,371,270...7,418,756
Ensembl chrNW_004936476:7,371,149...7,418,958 		JBrowse link
G Got1 glutamic-oxaloacetic transaminase 1 ISO SMPDB SMP:00013 NCBI chrNW_004936636:617,376...640,424
Ensembl chrNW_004936636:617,356...640,932 		JBrowse link
G LOC101977655 glutamate--cysteine ligase regulatory subunit ISO SMPDB SMP:00013 NCBI chrNW_004936537:5,356,914...5,378,998 JBrowse link
G Mpst mercaptopyruvate sulfurtransferase ISO SMPDB SMP:00013 NCBI chrNW_004936492:3,873,295...3,876,895
Ensembl chrNW_004936492:3,873,176...3,876,706 		JBrowse link
cytosolic iron-sulfur cluster protein assembly pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ciao1 cytosolic iron-sulfur assembly component 1 ISO RGD PMID:25245479 PMID:25583461 RGD:11554190 RGD:11554192 NCBI chrNW_004936744:359,234...364,649
Ensembl chrNW_004936744:359,258...363,585 		JBrowse link
G Ciao2a cytosolic iron-sulfur assembly component 2A ISO RGD PMID:25245479 PMID:25583461 RGD:11554190 RGD:11554192 NCBI chrNW_004936471:24,547,862...24,568,003
Ensembl chrNW_004936471:24,548,235...24,567,792 		JBrowse link
G Ciao2b cytosolic iron-sulfur assembly component 2B ISO RGD PMID:25245479 PMID:25583461 RGD:11554190 RGD:11554192 NCBI chrNW_004936475:17,181,766...17,184,266
Ensembl chrNW_004936475:17,181,536...17,184,271 		JBrowse link
G Ciao3 cytosolic iron-sulfur assembly component 3 ISO RGD PMID:25245479 PMID:25583461 RGD:11554190 RGD:11554192 NCBI chrNW_004936501:277,525...286,929
Ensembl chrNW_004936501:277,518...286,932 		JBrowse link
G Ciapin1 cytokine induced apoptosis inhibitor 1 ISO RGD PMID:25245479 PMID:25583461 RGD:11554190 RGD:11554192 NCBI chrNW_004936475:9,485,214...9,502,619 JBrowse link
G Mms19 MMS19 homolog, cytosolic iron-sulfur assembly component ISO RGD PMID:25245479 PMID:25583461 RGD:11554190 RGD:11554192 NCBI chrNW_004936636:2,191,748...2,221,027
Ensembl chrNW_004936636:2,191,774...2,220,650 		JBrowse link
G Ndor1 NADPH dependent diflavin oxidoreductase 1 ISO RGD PMID:25245479 PMID:25583461 RGD:11554190 RGD:11554192 NCBI chrNW_004936669:773,494...782,286
Ensembl chrNW_004936669:773,472...782,292 		JBrowse link
G Nubp1 NUBP iron-sulfur cluster assembly factor 1, cytosolic ISO RGD PMID:25245479 PMID:25583461 RGD:11554190 RGD:11554192 NCBI chrNW_004936530:8,970,963...8,985,925
Ensembl chrNW_004936530:8,971,380...8,986,033 		JBrowse link
G Nubp2 NUBP iron-sulfur cluster assembly factor 2, cytosolic ISO RGD PMID:25245479 PMID:25583461 RGD:11554190 RGD:11554192 NCBI chrNW_004936694:2,208,102...2,211,910
Ensembl chrNW_004936694:2,208,518...2,211,653 		JBrowse link
de novo nicotinamide adenine dinucleotide biosynthetic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nadsyn1 NAD synthetase 1 ISO RGD PMID:20007326 RGD:11099972 NCBI chrNW_004936794:1,394,975...1,423,807
Ensembl chrNW_004936794:1,396,703...1,423,709 		JBrowse link
G Nmnat1 nicotinamide nucleotide adenylyltransferase 1 ISO RGD PMID:20007326 RGD:11099972 NCBI chrNW_004936623:3,862,234...3,891,849
Ensembl chrNW_004936623:3,870,031...3,891,849 		JBrowse link
G Nmnat2 nicotinamide nucleotide adenylyltransferase 2 ISO RGD PMID:20007326 RGD:11099972 NCBI chrNW_004936481:6,443,286...6,585,784
Ensembl chrNW_004936481:6,443,240...6,582,026 		JBrowse link
G Nmnat3 nicotinamide nucleotide adenylyltransferase 3 ISO RGD PMID:20007326 RGD:11099972 NCBI chrNW_004936540:1,653,243...1,766,244
Ensembl chrNW_004936540:1,636,380...1,766,306 		JBrowse link
G Qprt quinolinate phosphoribosyltransferase ISO RGD PMID:20007326 RGD:11099972 NCBI chrNW_004936501:12,743,634...12,763,068
Ensembl chrNW_004936501:12,742,157...12,763,187 		JBrowse link
de novo purine biosynthetic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adsl adenylosuccinate lyase ISO RGD PMID:20005278 RGD:5135488 NCBI chrNW_004936492:1,423,780...1,440,825 JBrowse link
G Adss1 adenylosuccinate synthase 1 ISO RGD PMID:10218106 RGD:5143930 NCBI chrNW_004936621:655,004...667,608
Ensembl chrNW_004936621:655,008...664,762 		JBrowse link
G Adss2 adenylosuccinate synthase 2 ISO RGD PMID:10218106 RGD:5143930 NCBI chrNW_004936526:6,342,233...6,380,736
Ensembl chrNW_004936526:6,342,221...6,380,840 		JBrowse link
G Ak1 adenylate kinase 1 ISO RGD PMID:16167529 RGD:5490520 NCBI chrNW_004936487:15,507,663...15,517,401
Ensembl chrNW_004936487:15,507,498...15,517,469 		JBrowse link
G Ak2 adenylate kinase 2 ISO RGD PMID:16167529 RGD:5490520 NCBI chrNW_004936474:15,887,014...15,908,522 JBrowse link
G Ak3 adenylate kinase 3 ISO RGD PMID:16167529 RGD:5490520 NCBI chrNW_004936503:497,391...517,011
Ensembl chrNW_004936503:496,965...516,888 		JBrowse link
G Ak4 adenylate kinase 4 ISO RGD PMID:16167529 RGD:5490520 NCBI chrNW_004936692:2,593,409...2,654,583 JBrowse link
G Ak5 adenylate kinase 5 ISO RGD PMID:16167529 RGD:5490520 NCBI chrNW_004936571:4,182,450...4,418,384
Ensembl chrNW_004936571:4,182,444...4,418,381 		JBrowse link
G Atic 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase ISO RGD PMID:9332377 PMID:20005278 RGD:5135488 RGD:70804 NCBI chrNW_004936586:1,782,581...1,809,458
Ensembl chrNW_004936586:1,782,528...1,810,010 		JBrowse link
G Gart phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase ISO RGD PMID:12450384 RGD:1547842 NCBI chrNW_004936500:8,750,928...8,782,303
Ensembl chrNW_004936500:8,753,463...8,786,236 		JBrowse link
G Gmps guanine monophosphate synthase ISO RGD PMID:20005278 RGD:5135488 NCBI chrNW_004936519:3,094,763...3,143,322
Ensembl chrNW_004936519:3,104,701...3,141,549 		JBrowse link
G Impdh1 inosine monophosphate dehydrogenase 1 ISO RGD PMID:18295529 RGD:5144133 NCBI chrNW_004936479:15,523,342...15,540,229
Ensembl chrNW_004936479:15,523,037...15,540,173 		JBrowse link
G Impdh2 inosine monophosphate dehydrogenase 2 ISO RGD PMID:18295529 RGD:5144133 NCBI chrNW_004936529:748,777...753,582
Ensembl chrNW_004936529:745,511...753,581 		JBrowse link
G LOC101961407 phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase ISO RGD PMID:7742366 RGD:633692 NCBI chrNW_004936482:18,649,093...18,664,629
Ensembl chrNW_004936482:18,626,015...18,667,164 		JBrowse link
G Ppat phosphoribosyl pyrophosphate amidotransferase ISO RGD PMID:20005278 RGD:5135488 NCBI chrNW_004936482:18,606,124...18,648,989
Ensembl chrNW_004936482:18,606,124...18,648,681 		JBrowse link
G Prps1 phosphoribosyl pyrophosphate synthetase 1 ISO RGD PMID:20005278 RGD:5135488 NCBI chrNW_004936499:7,114,838...7,136,468
Ensembl chrNW_004936499:7,115,780...7,136,449 		JBrowse link
G Prps1l1 phosphoribosyl pyrophosphate synthetase 1 like 1 ISO RGD PMID:20005278 RGD:5135488 NCBI chrNW_004936546:4,332,773...4,333,738 JBrowse link
G Prps2 phosphoribosyl pyrophosphate synthetase 2 ISO RGD PMID:20005278 RGD:5135488 NCBI chrNW_004936470:2,547,038...2,576,951
Ensembl chrNW_004936470:2,546,985...2,576,953 		JBrowse link
G Taf9 TATA-box binding protein associated factor 9 ISO RGD PMID:16167529 RGD:5490520 NCBI chrNW_004936480:252,435...256,609
Ensembl chrNW_004936480:252,435...256,609 		JBrowse link
de novo pyrimidine biosynthetic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase ISO RGD PMID:15096496 RGD:5133412 NCBI chrNW_004936493:5,308,268...5,332,934
Ensembl chrNW_004936493:5,310,228...5,332,918 		JBrowse link
G Cmpk1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:12678497 RGD:5133414 NCBI chrNW_004936474:28,147,459...28,180,779
Ensembl chrNW_004936474:28,147,085...28,182,043 		JBrowse link
G Cmpk2 cytidine/uridine monophosphate kinase 2 ISO RGD PMID:192455 RGD:5133256 NCBI chrNW_004936532:3,896,654...3,908,184
Ensembl chrNW_004936532:3,895,755...3,908,367 		JBrowse link
G Ctps1 CTP synthase 1 ISO RGD PMID:12678497 RGD:5133414 NCBI chrNW_004936474:22,611,037...22,633,208
Ensembl chrNW_004936474:22,602,800...22,633,169 		JBrowse link
G Ctps2 CTP synthase 2 ISO RGD PMID:20739275 RGD:5133419 NCBI chrNW_004936470:5,889,393...5,988,558
Ensembl chrNW_004936470:5,888,469...5,988,525 		JBrowse link
G Dhodh dihydroorotate dehydrogenase (quinone) ISO RGD PMID:15096496 RGD:5133412 NCBI chrNW_004936475:21,863,627...21,877,660
Ensembl chrNW_004936475:21,862,166...21,877,711 		JBrowse link
G Nme2 NME/NM23 nucleoside diphosphate kinase 2 ISO RGD PMID:11768308 RGD:5134680 NCBI chrNW_004936490:10,634,788...10,640,182
Ensembl chrNW_004936490:10,633,454...10,649,914 		JBrowse link
G Nme3 NME/NM23 nucleoside diphosphate kinase 3 ISO RGD PMID:11768308 RGD:5134680 NCBI chrNW_004936694:2,222,055...2,222,977
Ensembl chrNW_004936694:2,221,915...2,222,814 		JBrowse link
G Nme4 NME/NM23 nucleoside diphosphate kinase 4 ISO RGD PMID:11768308 RGD:5134680 NCBI chrNW_004936501:553,931...557,744 JBrowse link
G Nme6 NME/NM23 nucleoside diphosphate kinase 6 ISO RGD PMID:11768308 RGD:5134680 NCBI chrNW_004936529:88,929...96,207
Ensembl chrNW_004936529:88,949...96,236 		JBrowse link
G Umps uridine monophosphate synthetase ISO RGD PMID:15096496 RGD:5133412 NCBI chrNW_004936725:553,278...564,846
Ensembl chrNW_004936725:549,804...565,141 		JBrowse link
dopamine biosynthetic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddc dopa decarboxylase ISO RGD PMID:19342614 RGD:4139904 NCBI chrNW_004936686:1,322,153...1,405,434
Ensembl chrNW_004936686:1,301,207...1,405,384 		JBrowse link
G Qdpr quinoid dihydropteridine reductase ISO RGD PMID:19342614 RGD:4139904 NCBI chrNW_004936477:10,687,328...10,708,015
Ensembl chrNW_004936477:10,687,276...10,708,031 		JBrowse link
G Slc18a2 solute carrier family 18 member A2 ISO RGD PMID:19903816 RGD:5128868 NCBI chrNW_004936486:7,075,373...7,108,984
Ensembl chrNW_004936486:7,075,358...7,109,637 		JBrowse link
G Th tyrosine hydroxylase ISO RGD PMID:19342614 RGD:4139904 NCBI chrNW_004936794:478,651...486,887
Ensembl chrNW_004936794:478,614...487,061 		JBrowse link
electron transport chain pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp5f1a ATP synthase F1 subunit alpha ISO SMPDB SMP:00355 NCBI chrNW_004936517:743,036...752,836
Ensembl chrNW_004936517:742,791...753,336 		JBrowse link
G Atp5f1b ATP synthase F1 subunit beta ISO SMPDB SMP:00355 NCBI chrNW_004936646:951,236...958,907 JBrowse link
G Atp5f1c ATP synthase F1 subunit gamma ISO SMPDB SMP:00355 NCBI chrNW_004936484:7,016,049...7,031,060 JBrowse link
G Atp5f1d ATP synthase F1 subunit delta ISO SMPDB SMP:00355 NCBI chrNW_004936588:612,255...614,894
Ensembl chrNW_004936588:611,725...617,782 		JBrowse link
G Atp5f1e ATP synthase F1 subunit epsilon ISO SMPDB SMP:00355 NCBI chrNW_004936530:1,509,605...1,513,033
Ensembl chrNW_004936530:1,509,605...1,513,175 		JBrowse link
G Atp5mc2 ATP synthase membrane subunit c locus 2 ISO SMPDB SMP:00355 NCBI chrNW_004936512:10,908,915...10,918,445
Ensembl chrNW_004936512:10,908,881...10,918,445 		JBrowse link
G Atp5pb ATP synthase peripheral stalk-membrane subunit b ISO SMPDB SMP:00355 NCBI chrNW_004936690:120,572...135,509 JBrowse link
G Gapdh glyceraldehyde-3-phosphate dehydrogenase ISO SMPDB SMP:00355 NCBI chrNW_004936709:1,243,149...1,247,782 JBrowse link
G Gpd1 glycerol-3-phosphate dehydrogenase 1 ISO SMPDB SMP:00355 NCBI chrNW_004936512:7,762,325...7,770,007
Ensembl chrNW_004936512:7,762,643...7,770,309 		JBrowse link
G Gpd2 glycerol-3-phosphate dehydrogenase 2 ISO SMPDB SMP:00355 NCBI chrNW_004936469:21,705,421...21,833,143
Ensembl chrNW_004936469:21,705,421...21,831,745 		JBrowse link
G LOC101956274 cytochrome b-c1 complex subunit 1, mitochondrial ISO SMPDB SMP:00355 NCBI chrNW_004936529:385,942...396,196
Ensembl chrNW_004936529:385,851...396,230 		JBrowse link
G Ndufa1 NADH:ubiquinone oxidoreductase subunit A1 ISO SMPDB SMP:00355 NCBI chrNW_004936479:10,074,290...10,078,072
Ensembl chrNW_004936479:10,074,307...10,078,066 		JBrowse link
G Sdha succinate dehydrogenase complex flavoprotein subunit A ISO SMPDB
RGD		 PMID:16143825 RGD:2306881 SMP:00355 NCBI chrNW_004936815:1,148,963...1,167,585
Ensembl chrNW_004936815:1,148,963...1,167,568 		JBrowse link
G Sdhb succinate dehydrogenase complex iron sulfur subunit B ISO SMPDB
RGD		 PMID:16143825 RGD:2306881 SMP:00355 NCBI chrNW_004936474:3,993,224...4,021,359
Ensembl chrNW_004936474:3,990,778...4,021,423 		JBrowse link
G Sdhc succinate dehydrogenase complex subunit C ISO SMPDB
RGD		 PMID:16143825 RGD:2306881 SMP:00355 NCBI chrNW_004936903:592,641...636,845
Ensembl chrNW_004936903:601,355...636,092 		JBrowse link
G Sdhd succinate dehydrogenase complex subunit D ISO RGD
SMPDB		 PMID:15572694 PMID:16143825 RGD:1580035 RGD:2306881 SMP:00355 NCBI chrNW_004936612:2,357,336...2,369,204 JBrowse link
G Slc25a4 solute carrier family 25 member 4 ISO SMPDB SMP:00355 NCBI chrNW_004936554:4,130,461...4,135,046
Ensembl chrNW_004936554:4,130,459...4,135,044 		JBrowse link
G Slc37a4 solute carrier family 37 member 4 ISO SMPDB SMP:00355 NCBI chrNW_004936542:3,980,538...3,987,039
Ensembl chrNW_004936542:3,980,236...3,987,066 		JBrowse link
epinephrine biosynthetic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbh dopamine beta-hydroxylase ISO RGD PMID:19342614 RGD:4139904 NCBI chrNW_004936669:3,302,014...3,326,233
Ensembl chrNW_004936669:3,301,802...3,320,643 		JBrowse link
G Ddc dopa decarboxylase ISO RGD PMID:19342614 RGD:4139904 NCBI chrNW_004936686:1,322,153...1,405,434
Ensembl chrNW_004936686:1,301,207...1,405,384 		JBrowse link
G Pnmt phenylethanolamine N-methyltransferase ISO RGD PMID:7914070 PMID:19342614 RGD:4139902 RGD:4139904 NCBI chrNW_004936490:14,858,682...14,861,614
Ensembl chrNW_004936490:14,858,603...14,865,321 		JBrowse link
G Qdpr quinoid dihydropteridine reductase ISO RGD PMID:19342614 RGD:4139904 NCBI chrNW_004936477:10,687,328...10,708,015
Ensembl chrNW_004936477:10,687,276...10,708,031 		JBrowse link
G Slc18a2 solute carrier family 18 member A2 ISO RGD PMID:19903816 RGD:5128868 NCBI chrNW_004936486:7,075,373...7,108,984
Ensembl chrNW_004936486:7,075,358...7,109,637 		JBrowse link
G Th tyrosine hydroxylase ISO RGD PMID:19342614 RGD:4139904 NCBI chrNW_004936794:478,651...486,887
Ensembl chrNW_004936794:478,614...487,061 		JBrowse link
estradiol biosynthetic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fdx1 ferredoxin 1 ISO RGD PMID:18821018 RGD:2325883 NCBI chrNW_004936612:3,878,179...3,905,678
Ensembl chrNW_004936612:3,874,748...3,905,825 		JBrowse link
G Fdxr ferredoxin reductase ISO RGD PMID:18821018 RGD:2325883 NCBI chrNW_004936594:215,165...223,715
Ensembl chrNW_004936594:215,155...223,771 		JBrowse link
G Hsd17b1 hydroxysteroid 17-beta dehydrogenase 1 ISO RGD PMID:15583024 PMID:18821018 RGD:2325883 RGD:4889549 NCBI chrNW_004936490:17,312,390...17,314,423
Ensembl chrNW_004936490:17,312,390...17,314,409 		JBrowse link
G Hsd17b2 hydroxysteroid 17-beta dehydrogenase 2 ISO RGD PMID:15583024 RGD:4889549 NCBI chrNW_004936475:29,426,922...29,494,215
Ensembl chrNW_004936475:29,426,883...29,494,225 		JBrowse link
G Hsd17b3 hydroxysteroid 17-beta dehydrogenase 3 ISO RGD PMID:18821018 RGD:2325883 NCBI chrNW_004936487:228,301...282,495
Ensembl chrNW_004936487:228,557...245,295 		JBrowse link
G LOC101954950 aromatase ISO RGD PMID:18821018 RGD:2325883 NCBI chrNW_004936471:13,107,603...13,136,910
Ensembl chrNW_004936471:13,107,603...13,136,910 		JBrowse link
G LOC101965545 NADPH--cytochrome P450 reductase ISO RGD PMID:17926129 RGD:4892309 NCBI chrNW_004936543:2,275,981...2,327,931
Ensembl chrNW_004936543:2,274,059...2,328,008 		JBrowse link
G LOC101970767 steroid 17-alpha-hydroxylase/17,20 lyase ISO RGD PMID:17926129 RGD:4892309 NCBI chrNW_004936600:3,097,620...3,102,713
Ensembl chrNW_004936600:3,097,638...3,102,713 		JBrowse link
G LOC101975820 cholesterol side-chain cleavage enzyme, mitochondrial ISO RGD PMID:17926129 RGD:4892309 NCBI chrNW_004936471:33,367,810...33,380,764
Ensembl chrNW_004936471:33,367,810...33,380,764 		JBrowse link
G Star steroidogenic acute regulatory protein ISO RGD PMID:18821018 RGD:2325883 NCBI chrNW_004936710:1,523,289...1,530,181
Ensembl chrNW_004936710:1,523,355...1,529,672 		JBrowse link
G Sts steroid sulfatase ISO RGD PMID:21693170 RGD:6893583 NCBI chrNW_004936644:1,328,327...1,395,856
Ensembl chrNW_004936644:1,325,713...1,395,923 		JBrowse link
fatty acid beta degradation pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcd1 ATP binding cassette subfamily D member 1 ISO SMPDB SMP:00052 NCBI chrNW_004936809:615,133...634,618
Ensembl chrNW_004936809:615,139...635,990 		JBrowse link
G Abcd2 ATP binding cassette subfamily D member 2 ISO SMPDB SMP:00052 NCBI chrNW_004936607:1,292,964...1,345,671
Ensembl chrNW_004936607:1,292,888...1,343,334 		JBrowse link
G Acaa2 acetyl-CoA acyltransferase 2 ISO RGD
SMPDB		 PMID:11879205 RGD:2317624 SMP:00480 SMP:00481 SMP:00482 NCBI chrNW_004936497:13,242,644...13,269,007
Ensembl chrNW_004936497:13,242,644...13,269,532 		JBrowse link
G Acad9 acyl-CoA dehydrogenase family member 9 ISO RGD PMID:14728676 RGD:2317589 NCBI chrNW_004936798:83,952...106,381
Ensembl chrNW_004936798:90,584...106,041 		JBrowse link
G Acadl acyl-CoA dehydrogenase long chain ISO RGD
SMPDB		 PMID:3968063 PMID:14728676 RGD:2317589 RGD:2317678 SMP:00480 SMP:00482 NCBI chrNW_004936845:66,674...96,248
Ensembl chrNW_004936845:66,241...96,249 		JBrowse link
G Acadm acyl-CoA dehydrogenase medium chain ISO RGD
SMPDB		 PMID:3968063 PMID:14728676 RGD:2317589 RGD:2317678 SMP:00481 NCBI chrNW_004936571:2,761,254...2,797,045 JBrowse link
G Acads acyl-CoA dehydrogenase short chain ISO RGD
SMPDB		 PMID:3968063 PMID:14728676 RGD:2317589 RGD:2317678 SMP:00480 NCBI chrNW_004936668:257,214...272,089
Ensembl chrNW_004936668:254,595...272,118 		JBrowse link
G Acadvl acyl-CoA dehydrogenase very long chain ISO RGD PMID:14728676 PMID:15850553 RGD:2317589 RGD:2317683 NCBI chrNW_004936595:514,883...520,223
Ensembl chrNW_004936595:514,534...520,223 		JBrowse link
G Acat1 acetyl-CoA acetyltransferase 1 ISO SMPDB SMP:00480 NCBI chrNW_004936551:594,647...626,016
Ensembl chrNW_004936551:591,695...626,056 		JBrowse link
G Acsl1 acyl-CoA synthetase long chain family member 1 ISO SMPDB
RGD		 PMID:17762044 RGD:2317576 SMP:00052 SMP:00482 NCBI chrNW_004936554:4,425,518...4,484,853
Ensembl chrNW_004936554:4,425,495...4,484,887 		JBrowse link
G Acsl3 acyl-CoA synthetase long chain family member 3 ISO RGD PMID:17762044 RGD:2317576 NCBI chrNW_004936569:4,774,602...4,842,906
Ensembl chrNW_004936569:4,774,542...4,844,494 		JBrowse link
G Acsl4 acyl-CoA synthetase long chain family member 4 ISO RGD PMID:17762044 RGD:2317576 NCBI chrNW_004936499:5,456,985...5,540,115
Ensembl chrNW_004936499:5,456,986...5,540,144 		JBrowse link
G Acsl5 acyl-CoA synthetase long chain family member 5 ISO RGD PMID:17762044 RGD:2317576 NCBI chrNW_004936486:2,952,379...2,992,148
Ensembl chrNW_004936486:2,967,522...2,991,154 		JBrowse link
G Acsl6 acyl-CoA synthetase long chain family member 6 ISO RGD PMID:17762044 RGD:2317576 NCBI chrNW_004936647:3,153,586...3,208,935
Ensembl chrNW_004936647:3,153,485...3,213,582 		JBrowse link
G Acsm2b acyl-CoA synthetase medium chain family member 2B ISO RGD PMID:17762044 RGD:2317576 NCBI chrNW_004936501:5,925,845...5,943,462 JBrowse link
G Acsm3 acyl-CoA synthetase medium chain family member 3 ISO RGD PMID:17762044 RGD:2317576 NCBI chrNW_004936501:6,077,366...6,095,432
Ensembl chrNW_004936501:6,078,219...6,095,538 		JBrowse link
G Acss1 acyl-CoA synthetase short chain family member 1 ISO RGD PMID:17762044 RGD:2317576 NCBI chrNW_004936620:739,633...800,472
Ensembl chrNW_004936620:739,633...800,803 		JBrowse link
G Acss2 acyl-CoA synthetase short chain family member 2 ISO RGD PMID:17762044 RGD:2317576 NCBI chrNW_004936561:5,794,685...5,842,619
Ensembl chrNW_004936561:5,795,077...5,842,676 		JBrowse link
G Acss3 acyl-CoA synthetase short chain family member 3 ISO SMPDB SMP:00480 NCBI chrNW_004936698:1,929,683...2,089,703
Ensembl chrNW_004936698:1,929,683...2,089,228 		JBrowse link
G Cpt1a carnitine palmitoyltransferase 1A ISO SMPDB
RGD		 PMID:19430727 RGD:2317584 SMP:00482 NCBI chrNW_004936599:1,491,934...1,535,101
Ensembl chrNW_004936599:1,482,172...1,535,119 		JBrowse link
G Cpt1b carnitine palmitoyltransferase 1B ISO RGD PMID:19430727 RGD:2317584 NCBI chrNW_004936629:246,876...255,537
Ensembl chrNW_004936629:247,005...255,537 		JBrowse link
G Cpt2 carnitine palmitoyltransferase 2 ISO SMPDB
RGD		 PMID:19430727 RGD:2317584 SMP:00052 SMP:00482 NCBI chrNW_004936522:7,858,172...7,875,679
Ensembl chrNW_004936522:7,856,087...7,875,685 		JBrowse link
G Crat carnitine O-acetyltransferase ISO SMPDB SMP:00052 NCBI chrNW_004936487:16,523,571...16,537,242
Ensembl chrNW_004936487:16,523,571...16,537,248 		JBrowse link
G Crot carnitine O-octanoyltransferase ISO SMPDB SMP:00052 NCBI chrNW_004936763:1,425,394...1,462,638
Ensembl chrNW_004936763:1,424,935...1,462,679 		JBrowse link
G Echs1 enoyl-CoA hydratase, short chain 1 ISO RGD
SMPDB		 PMID:12379132 RGD:2317616 SMP:00480 SMP:00481 SMP:00482 NCBI chrNW_004936486:19,488,619...19,496,583
Ensembl chrNW_004936486:19,488,554...19,496,575 		JBrowse link
G Etfa electron transfer flavoprotein subunit alpha ISO RGD PMID:14728676 RGD:2317589 NCBI chrNW_004936471:35,868,851...35,942,662
Ensembl chrNW_004936471:35,868,757...35,943,139 		JBrowse link
G Etfb electron transfer flavoprotein subunit beta ISO RGD PMID:14728676 RGD:2317589 NCBI chrNW_004937378:26,164...31,470
Ensembl chrNW_004937378:23,268...33,276 		JBrowse link
G Etfdh electron transfer flavoprotein dehydrogenase ISO RGD PMID:14728676 RGD:2317589 NCBI chrNW_004936576:5,140,577...5,165,527
Ensembl chrNW_004936576:5,140,577...5,165,527 		JBrowse link
G Hadh hydroxyacyl-CoA dehydrogenase ISO RGD
SMPDB		 PMID:17491019 RGD:2302227 SMP:00480 SMP:00481 SMP:00482 NCBI chrNW_004936818:575,272...623,496
Ensembl chrNW_004936818:575,023...623,568 		JBrowse link
G Hadha hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha ISO SMPDB
RGD		 PMID:10816122 RGD:2317625 SMP:00481 SMP:00482 NCBI chrNW_004936493:6,182,786...6,224,601
Ensembl chrNW_004936493:6,182,261...6,224,693 		JBrowse link
G Hadhb hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta ISO SMPDB
RGD		 PMID:10816122 RGD:2317625 SMP:00481 SMP:00482 NCBI chrNW_004936493:6,139,717...6,182,792
Ensembl chrNW_004936493:6,137,970...6,182,792 		JBrowse link
G Hsd17b10 hydroxysteroid 17-beta dehydrogenase 10 ISO SMPDB SMP:00480 NCBI chrNW_004936751:399,743...402,200
Ensembl chrNW_004936751:399,701...402,344 		JBrowse link
G LOC101959362 peroxisomal membrane protein PEX14 ISO SMPDB SMP:00052 NCBI chrNW_004936623:4,313,186...4,462,462
Ensembl chrNW_004936623:4,313,147...4,462,528
Ensembl chrNW_004936623:4,313,147...4,462,528 		JBrowse link
G Pex11g peroxisomal biogenesis factor 11 gamma ISO SMPDB SMP:00052 NCBI chrNW_004936588:4,574,220...4,580,195
Ensembl chrNW_004936588:4,574,612...4,580,222 		JBrowse link
G Pex13 peroxisomal biogenesis factor 13 ISO SMPDB SMP:00052 NCBI chrNW_004936491:6,530,385...6,559,706
Ensembl chrNW_004936491:6,529,779...6,562,590 		JBrowse link
G Slc25a20 solute carrier family 25 member 20 ISO SMPDB
RGD		 PMID:19430727 RGD:2317584 SMP:00052 SMP:00481 SMP:00482 NCBI chrNW_004936529:607,035...631,872
Ensembl chrNW_004936529:606,804...631,991 		JBrowse link
fatty acid biosynthetic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acaca acetyl-CoA carboxylase alpha ISO RGD
SMPDB		 PMID:11735100 PMID:17882277 RGD:2317309 RGD:2317316 SMP:00456 NCBI chrNW_004936490:927,769...1,191,483
Ensembl chrNW_004936490:927,769...1,191,481 		JBrowse link
G Acly ATP citrate lyase ISO RGD PMID:11735100 PMID:17882277 RGD:2317309 RGD:2317316 NCBI chrNW_004936490:16,758,001...16,798,152
Ensembl chrNW_004936490:16,757,985...16,798,237 		JBrowse link
G Fasn fatty acid synthase ISO RGD
SMPDB		 PMID:15715522 PMID:17882277 PMID:19181734 RGD:2317204 RGD:2317309 RGD:2317317 SMP:00456 NCBI chrNW_004936594:5,591,785...5,609,886
Ensembl chrNW_004936594:5,592,609...5,608,972 		JBrowse link
fatty acid elongation pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acaa2 acetyl-CoA acyltransferase 2 ISO SMPDB SMP:00054 NCBI chrNW_004936497:13,242,644...13,269,007
Ensembl chrNW_004936497:13,242,644...13,269,532 		JBrowse link
G Echs1 enoyl-CoA hydratase, short chain 1 ISO SMPDB SMP:00054 NCBI chrNW_004936486:19,488,619...19,496,583
Ensembl chrNW_004936486:19,488,554...19,496,575 		JBrowse link
G Hadha hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha ISO SMPDB SMP:00054 NCBI chrNW_004936493:6,182,786...6,224,601
Ensembl chrNW_004936493:6,182,261...6,224,693 		JBrowse link
G Hadhb hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta ISO SMPDB SMP:00054 NCBI chrNW_004936493:6,139,717...6,182,792
Ensembl chrNW_004936493:6,137,970...6,182,792 		JBrowse link
G Hsd17b10 hydroxysteroid 17-beta dehydrogenase 10 ISO SMPDB SMP:00054 NCBI chrNW_004936751:399,743...402,200
Ensembl chrNW_004936751:399,701...402,344 		JBrowse link
G Mecr mitochondrial trans-2-enoyl-CoA reductase ISO SMPDB SMP:00054 NCBI chrNW_004936474:13,146,572...13,183,707
Ensembl chrNW_004936474:13,147,938...13,183,770 		JBrowse link
G Ppt1 palmitoyl-protein thioesterase 1 ISO SMPDB SMP:00054 NCBI chrNW_004936474:21,881,692...21,906,564
Ensembl chrNW_004936474:21,881,712...21,906,569 		JBrowse link
fatty acid metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acaa2 acetyl-CoA acyltransferase 2 ISO SMPDB SMP:00051 NCBI chrNW_004936497:13,242,644...13,269,007
Ensembl chrNW_004936497:13,242,644...13,269,532 		JBrowse link
G Acadl acyl-CoA dehydrogenase long chain ISO SMPDB SMP:00051 NCBI chrNW_004936845:66,674...96,248
Ensembl chrNW_004936845:66,241...96,249 		JBrowse link
G Acadm acyl-CoA dehydrogenase medium chain ISO SMPDB SMP:00051 NCBI chrNW_004936571:2,761,254...2,797,045 JBrowse link
G Acads acyl-CoA dehydrogenase short chain ISO SMPDB SMP:00051 NCBI chrNW_004936668:257,214...272,089
Ensembl chrNW_004936668:254,595...272,118 		JBrowse link
G Acadsb acyl-CoA dehydrogenase short/branched chain ISO SMPDB SMP:00051 NCBI chrNW_004936486:11,668,099...11,707,946
Ensembl chrNW_004936486:11,668,099...11,711,786 		JBrowse link
G Acadvl acyl-CoA dehydrogenase very long chain ISO SMPDB SMP:00051 NCBI chrNW_004936595:514,883...520,223
Ensembl chrNW_004936595:514,534...520,223 		JBrowse link
G Acat1 acetyl-CoA acetyltransferase 1 ISO SMPDB SMP:00051 NCBI chrNW_004936551:594,647...626,016
Ensembl chrNW_004936551:591,695...626,056 		JBrowse link
G Acsl1 acyl-CoA synthetase long chain family member 1 ISO SMPDB SMP:00051 NCBI chrNW_004936554:4,425,518...4,484,853
Ensembl chrNW_004936554:4,425,495...4,484,887 		JBrowse link
G Cpt1a carnitine palmitoyltransferase 1A ISO SMPDB SMP:00051 NCBI chrNW_004936599:1,491,934...1,535,101
Ensembl chrNW_004936599:1,482,172...1,535,119 		JBrowse link
G Cpt2 carnitine palmitoyltransferase 2 ISO SMPDB SMP:00051 NCBI chrNW_004936522:7,858,172...7,875,679
Ensembl chrNW_004936522:7,856,087...7,875,685 		JBrowse link
G Echs1 enoyl-CoA hydratase, short chain 1 ISO SMPDB SMP:00051 NCBI chrNW_004936486:19,488,619...19,496,583
Ensembl chrNW_004936486:19,488,554...19,496,575 		JBrowse link
G Gcdh glutaryl-CoA dehydrogenase ISO SMPDB SMP:00051 NCBI chrNW_004936659:1,955,601...1,961,925
Ensembl chrNW_004936659:1,955,559...1,962,758 		JBrowse link
G Hadha hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha ISO RGD
SMPDB		 PMID:1730633 RGD:1600572 SMP:00051 NCBI chrNW_004936493:6,182,786...6,224,601
Ensembl chrNW_004936493:6,182,261...6,224,693 		JBrowse link
G Hadhb hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta ISO SMPDB
RGD		 PMID:1730633 RGD:1600572 SMP:00051 NCBI chrNW_004936493:6,139,717...6,182,792
Ensembl chrNW_004936493:6,137,970...6,182,792 		JBrowse link
folate cycle metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1l1 aldehyde dehydrogenase 1 family member L1 ISO RGD PMID:22353665 RGD:7242562 NCBI chrNW_004936898:456,299...484,681
Ensembl chrNW_004936898:456,521...484,282 		JBrowse link
G Amt aminomethyltransferase ISO RGD PMID:20645850 RGD:7242560 NCBI chrNW_004936529:1,049,364...1,054,458 JBrowse link
G Dhfr dihydrofolate reductase ISO RGD PMID:22108709 RGD:7242557 NCBI chrNW_004936469:67,962...83,116 JBrowse link
G Dld dihydrolipoamide dehydrogenase ISO RGD PMID:20645850 RGD:7242560 NCBI chrNW_004936479:16,247,230...16,271,597
Ensembl chrNW_004936479:16,243,829...16,271,616 		JBrowse link
G Dmgdh dimethylglycine dehydrogenase ISO RGD PMID:20645850 RGD:7242560 NCBI chrNW_004936549:6,838,773...6,899,961
Ensembl chrNW_004936549:6,839,295...6,899,911 		JBrowse link
G Folr1 folate receptor alpha ISO RGD PMID:22108709 RGD:7242557 NCBI chrNW_004936498:1,489,916...1,497,200
Ensembl chrNW_004936498:1,491,547...1,497,226 		JBrowse link
G Folr2 folate receptor beta ISO RGD PMID:22108709 RGD:7242557 NCBI chrNW_004936498:1,516,719...1,522,187
Ensembl chrNW_004936498:1,516,710...1,522,347 		JBrowse link
G Fpgs folylpolyglutamate synthase ISO RGD PMID:16859665 RGD:7242559 NCBI chrNW_004936487:15,453,010...15,466,591
Ensembl chrNW_004936487:15,453,032...15,468,985 		JBrowse link
G Gcsh glycine cleavage system protein H ISO RGD PMID:20645850 RGD:7242560 NCBI chrNW_004936475:28,749,545...28,760,242
Ensembl chrNW_004936475:28,749,580...28,760,230 		JBrowse link
G Ggh gamma-glutamyl hydrolase ISO RGD PMID:16859665 RGD:7242559 NCBI chrNW_004936496:10,485,528...10,505,506
Ensembl chrNW_004936496:10,485,504...10,505,842 		JBrowse link
G Gldc glycine decarboxylase ISO RGD PMID:20645850 RGD:7242560 NCBI chrNW_004936539:1,008,340...1,095,044
Ensembl chrNW_004936539:1,007,820...1,095,054 		JBrowse link
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 ISO RGD PMID:22108709 RGD:7242557 NCBI chrNW_004936495:8,100,977...8,170,244
Ensembl chrNW_004936495:8,100,912...8,171,800 		JBrowse link
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like ISO RGD PMID:22108709 RGD:7242557 NCBI chrNW_004936489:3,877,423...4,060,129
Ensembl chrNW_004936489:3,876,680...4,051,933 		JBrowse link
G Mthfd2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase ISO RGD PMID:20645850 PMID:22108709 RGD:7242557 RGD:7242560 NCBI chrNW_004936556:462,998...475,092
Ensembl chrNW_004936556:462,974...475,159 		JBrowse link
G Mthfd2l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like ISO RGD PMID:22108709 RGD:7242557 NCBI chrNW_004936598:1,401,392...1,514,314
Ensembl chrNW_004936598:1,401,402...1,514,357 		JBrowse link
G Mthfr methylenetetrahydrofolate reductase ISO RGD PMID:22108709 RGD:7242557 NCBI chrNW_004936474:623,438...637,849
Ensembl chrNW_004936474:623,291...638,193 		JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase ISO RGD PMID:22108709 RGD:7242557 NCBI chrNW_004936484:16,087,924...16,180,089
Ensembl chrNW_004936484:16,087,923...16,180,148 		JBrowse link
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase ISO RGD PMID:22108709 RGD:7242557 NCBI chrNW_004936643:379,790...410,034
Ensembl chrNW_004936643:380,968...409,464 		JBrowse link
G Sardh sarcosine dehydrogenase ISO RGD PMID:20645850 RGD:7242560 NCBI chrNW_004936669:3,244,302...3,297,906
Ensembl chrNW_004936669:3,243,762...3,297,905 		JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 ISO RGD PMID:22108709 RGD:7242557 NCBI chrNW_004936741:1,849,239...1,877,724
Ensembl chrNW_004936741:1,849,609...1,877,727 		JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 ISO RGD PMID:20645850 PMID:22108709 RGD:7242557 RGD:7242560 NCBI chrNW_004936646:1,422,844...1,427,929
Ensembl chrNW_004936646:1,422,817...1,429,037 		JBrowse link
G Slc19a1 solute carrier family 19 member 1 ISO RGD PMID:20814827 PMID:22108709 RGD:7242426 RGD:7242557 NCBI chrNW_004936778:823,376...846,843
Ensembl chrNW_004936778:829,550...848,833 		JBrowse link
G Slc25a32 solute carrier family 25 member 32 ISO RGD PMID:22332074 RGD:7242561 NCBI chrNW_004936470:40,357,066...40,370,514
Ensembl chrNW_004936470:40,357,446...40,370,514 		JBrowse link
G Slc46a1 solute carrier family 46 member 1 ISO RGD PMID:20814827 PMID:22108709 RGD:7242426 RGD:7242557 NCBI chrNW_004936538:4,549,032...4,642,870
Ensembl chrNW_004936538:4,549,599...4,555,415 		JBrowse link
folate mediated one-carbon metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1l1 aldehyde dehydrogenase 1 family member L1 ISO RGD PMID:14729668 RGD:1547843 NCBI chrNW_004936898:456,299...484,681
Ensembl chrNW_004936898:456,521...484,282 		JBrowse link
G Atic 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase ISO RGD PMID:9332377 PMID:22332074 RGD:70804 RGD:7242561 NCBI chrNW_004936586:1,782,581...1,809,458
Ensembl chrNW_004936586:1,782,528...1,810,010 		JBrowse link
G Dhfr dihydrofolate reductase ISO RGD PMID:11502523 PMID:22332074 RGD:1298877 RGD:7242561 NCBI chrNW_004936469:67,962...83,116 JBrowse link
G Dmgdh dimethylglycine dehydrogenase ISO RGD PMID:15358367 RGD:1547831 NCBI chrNW_004936549:6,838,773...6,899,961
Ensembl chrNW_004936549:6,839,295...6,899,911 		JBrowse link
G Gart phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase ISO RGD PMID:12450384 PMID:22332074 RGD:1547842 RGD:7242561 NCBI chrNW_004936500:8,750,928...8,782,303
Ensembl chrNW_004936500:8,753,463...8,786,236 		JBrowse link
G Gnmt glycine N-methyltransferase ISO RGD PMID:8278367 RGD:1545057 NCBI chrNW_004936476:16,961,734...16,965,487
Ensembl chrNW_004936476:16,957,270...16,965,346 		JBrowse link
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 ISO RGD PMID:2186031 PMID:22332074 RGD:1299513 RGD:7242561 NCBI chrNW_004936495:8,100,977...8,170,244
Ensembl chrNW_004936495:8,100,912...8,171,800 		JBrowse link
G Mthfd2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase ISO RGD PMID:9454603 RGD:1540378 NCBI chrNW_004936556:462,998...475,092
Ensembl chrNW_004936556:462,974...475,159 		JBrowse link
G Mthfr methylenetetrahydrofolate reductase ISO RGD PMID:11933257 PMID:22332074 RGD:1535021 RGD:7242561 NCBI chrNW_004936474:623,438...637,849
Ensembl chrNW_004936474:623,291...638,193 		JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase ISO RGD PMID:15845641 PMID:20814827 RGD:1359026 RGD:7242426 NCBI chrNW_004936484:16,087,924...16,180,089
Ensembl chrNW_004936484:16,087,923...16,180,148 		JBrowse link
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase ISO RGD PMID:20814827 RGD:7242426 NCBI chrNW_004936643:379,790...410,034
Ensembl chrNW_004936643:380,968...409,464 		JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 ISO RGD PMID:3110140 PMID:15671219 PMID:22332074 RGD:1359815 RGD:2300383 RGD:7242561 NCBI chrNW_004936741:1,849,239...1,877,724
Ensembl chrNW_004936741:1,849,609...1,877,727 		JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 ISO RGD PMID:3110140 PMID:15671219 PMID:22332074 RGD:1359815 RGD:2300383 RGD:7242561 NCBI chrNW_004936646:1,422,844...1,427,929
Ensembl chrNW_004936646:1,422,817...1,429,037 		JBrowse link
G Tyms thymidylate synthetase ISO RGD PMID:9894005 PMID:22332074 RGD:1545055 RGD:7242561 NCBI chrNW_004936550:33,797...42,233
Ensembl chrNW_004936550:34,048...41,840 		JBrowse link
folate metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1l1 aldehyde dehydrogenase 1 family member L1 ISO SMPDB
RGD		 PMID:14729668 RGD:1547843 SMP:00053 NCBI chrNW_004936898:456,299...484,681
Ensembl chrNW_004936898:456,521...484,282 		JBrowse link
G Dhfr dihydrofolate reductase ISO RGD
SMPDB		 PMID:11502523 RGD:1298877 SMP:00053 NCBI chrNW_004936469:67,962...83,116 JBrowse link
G Dmgdh dimethylglycine dehydrogenase ISO RGD PMID:15358367 RGD:1547831 NCBI chrNW_004936549:6,838,773...6,899,961
Ensembl chrNW_004936549:6,839,295...6,899,911 		JBrowse link
G Folr2 folate receptor beta ISO RGD PMID:8445646 RGD:1540379 NCBI chrNW_004936498:1,516,719...1,522,187
Ensembl chrNW_004936498:1,516,710...1,522,347 		JBrowse link
G Fpgs folylpolyglutamate synthase ISO SMPDB SMP:00053 NCBI chrNW_004936487:15,453,010...15,466,591
Ensembl chrNW_004936487:15,453,032...15,468,985 		JBrowse link
G Ftcd formimidoyltransferase cyclodeaminase ISO SMPDB SMP:00053 NCBI chrNW_004936778:375,800...390,764
Ensembl chrNW_004936778:375,800...390,554 		JBrowse link
G Gart phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase ISO RGD PMID:12450384 RGD:1547842 NCBI chrNW_004936500:8,750,928...8,782,303
Ensembl chrNW_004936500:8,753,463...8,786,236 		JBrowse link
G Ggh gamma-glutamyl hydrolase ISO SMPDB SMP:00053 NCBI chrNW_004936496:10,485,528...10,505,506
Ensembl chrNW_004936496:10,485,504...10,505,842 		JBrowse link
G Gnmt glycine N-methyltransferase ISO RGD PMID:15347642 RGD:1359070 NCBI chrNW_004936476:16,961,734...16,965,487
Ensembl chrNW_004936476:16,957,270...16,965,346 		JBrowse link
G Mtfmt mitochondrial methionyl-tRNA formyltransferase ISO SMPDB SMP:00053 NCBI chrNW_004936471:25,334,544...25,352,520
Ensembl chrNW_004936471:25,335,068...25,352,480 		JBrowse link
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 ISO SMPDB
RGD		 PMID:2186031 RGD:1299513 SMP:00053 NCBI chrNW_004936495:8,100,977...8,170,244
Ensembl chrNW_004936495:8,100,912...8,171,800 		JBrowse link
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like ISO SMPDB SMP:00053 NCBI chrNW_004936489:3,877,423...4,060,129
Ensembl chrNW_004936489:3,876,680...4,051,933 		JBrowse link
G Mthfd2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase ISO SMPDB
RGD		 PMID:9454603 RGD:1540378 SMP:00053 NCBI chrNW_004936556:462,998...475,092
Ensembl chrNW_004936556:462,974...475,159 		JBrowse link
G Mthfr methylenetetrahydrofolate reductase ISO SMPDB
RGD		 PMID:11933257 RGD:1535021 SMP:00053 NCBI chrNW_004936474:623,438...637,849
Ensembl chrNW_004936474:623,291...638,193 		JBrowse link
G Mthfs methenyltetrahydrofolate synthetase ISO SMPDB SMP:00053 NCBI chrNW_004936471:37,910,856...37,964,655
Ensembl chrNW_004936471:37,902,554...37,964,812 		JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase ISO RGD PMID:15845641 RGD:1359026 NCBI chrNW_004936484:16,087,924...16,180,089
Ensembl chrNW_004936484:16,087,923...16,180,148 		JBrowse link
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase ISO RGD PMID:15979034 RGD:1359037 NCBI chrNW_004936643:379,790...410,034
Ensembl chrNW_004936643:380,968...409,464 		JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 ISO RGD PMID:15671219 RGD:1359815 NCBI chrNW_004936741:1,849,239...1,877,724
Ensembl chrNW_004936741:1,849,609...1,877,727 		JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 ISO RGD PMID:15671219 RGD:1359815 NCBI chrNW_004936646:1,422,844...1,427,929
Ensembl chrNW_004936646:1,422,817...1,429,037 		JBrowse link
G Slc19a1 solute carrier family 19 member 1 ISO RGD PMID:11600421 RGD:735239 NCBI chrNW_004936778:823,376...846,843
Ensembl chrNW_004936778:829,550...848,833 		JBrowse link
G Slc46a1 solute carrier family 46 member 1 ISO SMPDB SMP:00053 NCBI chrNW_004936538:4,549,032...4,642,870
Ensembl chrNW_004936538:4,549,599...4,555,415 		JBrowse link
G Tyms thymidylate synthetase ISO RGD PMID:9894005 RGD:1545055 NCBI chrNW_004936550:33,797...42,233
Ensembl chrNW_004936550:34,048...41,840 		JBrowse link
fructose and mannose metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1b1 aldo-keto reductase family 1 member B ISO SMPDB SMP:00064 NCBI chrNW_004936579:1,312,175...1,328,397 JBrowse link
G Aldoa aldolase, fructose-bisphosphate A ISO SMPDB SMP:00064 NCBI chrNW_004936501:12,418,090...12,423,959
Ensembl chrNW_004936501:12,418,090...12,422,689 		JBrowse link
G Aldob aldolase, fructose-bisphosphate B ISO SMPDB SMP:00064 NCBI chrNW_004936524:9,584,302...9,592,961
Ensembl chrNW_004936524:9,584,140...9,596,276 		JBrowse link
G Fbp1 fructose-bisphosphatase 1 ISO SMPDB SMP:00064 NCBI chrNW_004936626:3,555,835...3,581,651
Ensembl chrNW_004936626:3,555,762...3,581,659 		JBrowse link
G Fcsk fucose kinase ISO SMPDB SMP:00064 NCBI chrNW_004936475:23,116,638...23,136,635
Ensembl chrNW_004936475:23,116,646...23,136,604 		JBrowse link
G Fpgt fucose-1-phosphate guanylyltransferase ISO SMPDB SMP:00064 NCBI chrNW_004936571:1,522,765...1,530,418
Ensembl chrNW_004936571:1,522,741...1,530,725 		JBrowse link
G Gfus GDP-L-fucose synthase ISO SMPDB SMP:00064 NCBI chrNW_004936470:8,523,240...8,527,451
Ensembl chrNW_004936470:8,523,562...8,527,546 		JBrowse link
G Gmds GDP-mannose 4,6-dehydratase ISO SMPDB SMP:00064 NCBI chrNW_004936633:2,752,677...3,367,408
Ensembl chrNW_004936633:2,752,443...3,367,443 		JBrowse link
G Gmppb GDP-mannose pyrophosphorylase B ISO SMPDB SMP:00064 NCBI chrNW_004936529:1,336,002...1,338,615
Ensembl chrNW_004936529:1,336,002...1,338,400 		JBrowse link
G Hk1 hexokinase 1 ISO SMPDB SMP:00064 NCBI chrNW_004936521:9,067,062...9,139,112
Ensembl chrNW_004936521:9,066,999...9,159,793 		JBrowse link
G Khk ketohexokinase ISO SMPDB SMP:00064 NCBI chrNW_004936493:5,444,284...5,455,100
Ensembl chrNW_004936493:5,441,165...5,455,176 		JBrowse link
G Mpi mannose phosphate isomerase ISO SMPDB SMP:00064 NCBI chrNW_004936471:33,845,003...33,854,263
Ensembl chrNW_004936471:33,844,815...33,854,366 		JBrowse link
G Pfkfb1 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 ISO SMPDB SMP:00064 NCBI chrNW_004936751:1,753,627...1,806,315
Ensembl chrNW_004936751:1,753,627...1,806,294 		JBrowse link
G Pfkl phosphofructokinase, liver type ISO SMPDB SMP:00064 NCBI chrNW_004936500:94,016...117,598
Ensembl chrNW_004936500:93,854...117,653 		JBrowse link
G Phpt1 phosphohistidine phosphatase 1 ISO SMPDB SMP:00064 NCBI chrNW_004936669:1,065,901...1,067,214
Ensembl chrNW_004936669:1,065,900...1,067,214 		JBrowse link
G Pmm1 phosphomannomutase 1 ISO SMPDB SMP:00064 NCBI chrNW_004936492:357,732...368,042
Ensembl chrNW_004936492:357,665...372,008 		JBrowse link
G Sord sorbitol dehydrogenase ISO SMPDB SMP:00064 NCBI chrNW_004936471:7,760,097...7,805,475
Ensembl chrNW_004936471:7,760,052...7,795,671 		JBrowse link
G Tpi1 triosephosphate isomerase 1 ISO SMPDB SMP:00064 NCBI chrNW_004936709:948,151...951,430
Ensembl chrNW_004936709:945,201...951,441 		JBrowse link
galactose metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1b1 aldo-keto reductase family 1 member B ISO SMPDB SMP:00043 NCBI chrNW_004936579:1,312,175...1,328,397 JBrowse link
G B4galt1 beta-1,4-galactosyltransferase 1 ISO SMPDB SMP:00043 NCBI chrNW_004936524:1,659,791...1,713,971
Ensembl chrNW_004936524:1,659,608...1,714,102 		JBrowse link
G G6pc1 glucose-6-phosphatase catalytic subunit 1 ISO SMPDB SMP:00043 NCBI chrNW_004936490:17,605,865...17,614,754
Ensembl chrNW_004936490:17,605,865...17,615,145 		JBrowse link
G Gaa alpha glucosidase ISO SMPDB SMP:00043 NCBI chrNW_004936594:4,125,595...4,142,261 JBrowse link
G Gale UDP-galactose-4-epimerase ISO SMPDB SMP:00043 NCBI chrNW_004936474:8,949,814...8,954,269
Ensembl chrNW_004936474:8,949,798...8,954,315 		JBrowse link
G Galk1 galactokinase 1 ISO SMPDB SMP:00043 NCBI chrNW_004936594:944,936...950,537
Ensembl chrNW_004936594:944,944...949,838 		JBrowse link
G Galt galactose-1-phosphate uridylyltransferase ISO SMPDB SMP:00043 NCBI chrNW_004936524:2,726,795...2,730,049
Ensembl chrNW_004936524:2,726,749...2,730,564 		JBrowse link
G Gck glucokinase ISO SMPDB SMP:00043 NCBI chrNW_004936478:19,104,477...19,118,915
Ensembl chrNW_004936478:19,105,361...19,158,733 		JBrowse link
G Gla galactosidase alpha ISO SMPDB SMP:00043 NCBI chrNW_004936813:474,938...484,753
Ensembl chrNW_004936813:474,949...484,760 		JBrowse link
G Glb1 galactosidase beta 1 ISO SMPDB SMP:00043 NCBI chrNW_004936473:23,348,431...23,440,271
Ensembl chrNW_004936473:23,348,416...23,440,196 		JBrowse link
G Hk1 hexokinase 1 ISO SMPDB SMP:00043 NCBI chrNW_004936521:9,067,062...9,139,112
Ensembl chrNW_004936521:9,066,999...9,159,793 		JBrowse link
G Lct lactase ISO SMPDB SMP:00043 NCBI chrNW_004936469:40,064,822...40,108,423
Ensembl chrNW_004936469:40,064,822...40,107,447 		JBrowse link
G Pgm1 phosphoglucomutase 1 ISO SMPDB SMP:00043 NCBI chrNW_004936692:1,160,836...1,221,270
Ensembl chrNW_004936692:1,160,623...1,221,746 		JBrowse link
G Ugp2 UDP-glucose pyrophosphorylase 2 ISO SMPDB SMP:00043 NCBI chrNW_004936491:8,773,910...8,834,984
Ensembl chrNW_004936491:8,773,892...8,837,661 		JBrowse link
gluconeogenesis pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldoa aldolase, fructose-bisphosphate A ISO SMPDB
RGD		 PMID:5251864 RGD:2302796 SMP:00128 NCBI chrNW_004936501:12,418,090...12,423,959
Ensembl chrNW_004936501:12,418,090...12,422,689 		JBrowse link
G Aldob aldolase, fructose-bisphosphate B ISO RGD PMID:5251864 RGD:2302796 NCBI chrNW_004936524:9,584,302...9,592,961
Ensembl chrNW_004936524:9,584,140...9,596,276 		JBrowse link
G Bpgm bisphosphoglycerate mutase ISO SMPDB SMP:00128 NCBI chrNW_004936579:1,141,637...1,164,554
Ensembl chrNW_004936579:1,141,598...1,164,630 		JBrowse link
G Eno1 enolase 1 ISO RGD
SMPDB		 PMID:2966075 RGD:2302802 SMP:00128 NCBI chrNW_004936623:3,115,357...3,130,289
Ensembl chrNW_004936623:3,115,081...3,128,183 		JBrowse link
G Eno2 enolase 2 ISO RGD PMID:15720133 RGD:2302795 NCBI chrNW_004936709:904,647...913,445
Ensembl chrNW_004936709:904,031...913,451 		JBrowse link
G Fbp1 fructose-bisphosphatase 1 ISO SMPDB
RGD		 PMID:4353083 PMID:11440903 RGD:2302851 RGD:2302970 SMP:00128 NCBI chrNW_004936626:3,555,835...3,581,651
Ensembl chrNW_004936626:3,555,762...3,581,659 		JBrowse link
G Fbp2 fructose-bisphosphatase 2 ISO RGD PMID:4353083 PMID:11440903 RGD:2302851 RGD:2302970 NCBI chrNW_004936626:3,521,953...3,548,206
Ensembl chrNW_004936626:3,521,953...3,548,195 		JBrowse link
G G6pc1 glucose-6-phosphatase catalytic subunit 1 ISO RGD
SMPDB		 PMID:4303362 PMID:4353083 PMID:11440903 RGD:2302850 RGD:2302851 RGD:2302970 SMP:00128 NCBI chrNW_004936490:17,605,865...17,614,754
Ensembl chrNW_004936490:17,605,865...17,615,145 		JBrowse link
G G6pc3 glucose-6-phosphatase catalytic subunit 3 ISO RGD PMID:4303362 PMID:4353083 PMID:11440903 RGD:2302850 RGD:2302851 RGD:2302970 NCBI chrNW_004936541:556,413...561,336
Ensembl chrNW_004936541:556,307...561,333 		JBrowse link
G Gapdh glyceraldehyde-3-phosphate dehydrogenase ISO SMPDB
RGD		 PMID:15720133 RGD:2302795 SMP:00128 NCBI chrNW_004936709:1,243,149...1,247,782 JBrowse link
G Got1 glutamic-oxaloacetic transaminase 1 ISO RGD PMID:2966075 RGD:2302802 NCBI chrNW_004936636:617,376...640,424
Ensembl chrNW_004936636:617,356...640,932 		JBrowse link
G Gpi glucose-6-phosphate isomerase ISO SMPDB SMP:00128 NCBI chrNW_004936570:1,582,120...1,608,537
Ensembl chrNW_004936570:1,579,372...1,608,788 		JBrowse link
G Hk2 hexokinase 2 ISO SMPDB SMP:00128 NCBI chrNW_004936556:1,054,143...1,113,425
Ensembl chrNW_004936556:1,054,021...1,113,450 		JBrowse link
G LOC101967759 galactose mutarotase ISO SMPDB SMP:00128 NCBI chrNW_004936508:12,495,438...12,502,236 JBrowse link
G Mdh2 malate dehydrogenase 2 ISO SMPDB SMP:00128 NCBI chrNW_004936543:2,194,074...2,208,626
Ensembl chrNW_004936543:2,194,032...2,208,651 		JBrowse link
G Mpc1 mitochondrial pyruvate carrier 1 ISO SMPDB SMP:00128 NCBI chrNW_004936489:16,179,321...16,181,991
Ensembl chrNW_004936489:16,179,810...16,184,020 		JBrowse link
G Pank1 pantothenate kinase 1 ISO SMPDB SMP:00128 NCBI chrNW_004936601:4,578,132...4,639,305
Ensembl chrNW_004936601:4,578,394...4,638,170 		JBrowse link
G Pc pyruvate carboxylase ISO RGD
SMPDB		 PMID:4353083 PMID:5773282 PMID:6049928 PMID:18613815 RGD:2302809 RGD:2302851 RGD:2302971 RGD:2302972 SMP:00128 NCBI chrNW_004936599:2,677,770...2,793,033
Ensembl chrNW_004936599:2,677,583...2,793,197 		JBrowse link
G Pck1 phosphoenolpyruvate carboxykinase 1 ISO RGD
SMPDB		 PMID:2966075 PMID:4303362 PMID:4353083 PMID:6049928 PMID:11440903 More... RGD:2302802 RGD:2302809 RGD:2302850 RGD:2302851 RGD:2302970 RGD:2302971 SMP:00128 NCBI chrNW_004936530:361,872...367,005
Ensembl chrNW_004936530:361,872...367,005 		JBrowse link
G Pck2 phosphoenolpyruvate carboxykinase 2, mitochondrial ISO RGD PMID:2966075 PMID:4353083 PMID:6049928 PMID:11440903 PMID:18613815 RGD:2302802 RGD:2302809 RGD:2302851 RGD:2302970 RGD:2302971 NCBI chrNW_004936722:428,473...450,452
Ensembl chrNW_004936722:428,307...437,328 		JBrowse link
G Pfkfb1 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 ISO RGD PMID:15170386 RGD:2302793 NCBI chrNW_004936751:1,753,627...1,806,315
Ensembl chrNW_004936751:1,753,627...1,806,294 		JBrowse link
G Pgam1 phosphoglycerate mutase 1 ISO SMPDB SMP:00128 NCBI chrNW_004936636:2,240,452...2,248,689
Ensembl chrNW_004936636:2,236,508...2,248,768 		JBrowse link
G Pgam2 phosphoglycerate mutase 2 ISO RGD
SMPDB		 PMID:15720133 PMID:18092946 RGD:2302794 RGD:2302795 SMP:00128 NCBI chrNW_004936478:19,021,928...19,026,110
Ensembl chrNW_004936478:19,020,048...19,024,394 		JBrowse link
G Pgk1 phosphoglycerate kinase 1 ISO RGD PMID:3091090 PMID:15720133 RGD:2302795 RGD:2302860 NCBI chrNW_004936547:286,267...310,062
Ensembl chrNW_004936547:286,267...310,062 		JBrowse link
G Pgm1 phosphoglucomutase 1 ISO SMPDB SMP:00128 NCBI chrNW_004936692:1,160,836...1,221,270
Ensembl chrNW_004936692:1,160,623...1,221,746 		JBrowse link
G Slc25a11 solute carrier family 25 member 11 ISO SMPDB SMP:00128 NCBI chrNW_004936677:2,770,969...2,773,973
Ensembl chrNW_004936677:2,770,964...2,776,022 		JBrowse link
G Slc2a2 solute carrier family 2 member 2 ISO SMPDB SMP:00128 NCBI chrNW_004936593:1,572,661...1,605,071
Ensembl chrNW_004936593:1,572,672...1,604,947 		JBrowse link
G Slc37a4 solute carrier family 37 member 4 ISO SMPDB SMP:00128 NCBI chrNW_004936542:3,980,538...3,987,039
Ensembl chrNW_004936542:3,980,236...3,987,066 		JBrowse link
G Tpi1 triosephosphate isomerase 1 ISO SMPDB SMP:00128 NCBI chrNW_004936709:948,151...951,430
Ensembl chrNW_004936709:945,201...951,441 		JBrowse link
glutamic acid/glutamate metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abat 4-aminobutyrate aminotransferase ISO SMPDB SMP:00072 NCBI chrNW_004936530:7,543,743...7,621,392
Ensembl chrNW_004936530:7,543,682...7,622,667 		JBrowse link
G Aldh4a1 aldehyde dehydrogenase 4 family member A1 ISO SMPDB SMP:00072 NCBI chrNW_004936474:5,217,601...5,246,718
Ensembl chrNW_004936474:5,218,686...5,246,664 		JBrowse link
G Aldh5a1 aldehyde dehydrogenase 5 family member A1 ISO SMPDB SMP:00072 NCBI chrNW_004936671:843,577...865,798
Ensembl chrNW_004936671:843,577...865,881 		JBrowse link
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase ISO SMPDB SMP:00072 NCBI chrNW_004936493:5,308,268...5,332,934
Ensembl chrNW_004936493:5,310,228...5,332,918 		JBrowse link
G Cps1 carbamoyl-phosphate synthase 1 ISO SMPDB SMP:00072 NCBI chrNW_004936586:5,739,038...5,850,317
Ensembl chrNW_004936586:5,739,337...5,850,312 		JBrowse link
G Ears2 glutamyl-tRNA synthetase 2, mitochondrial ISO SMPDB SMP:00072 NCBI chrNW_004936501:8,190,466...8,209,320
Ensembl chrNW_004936501:8,188,071...8,209,386 		JBrowse link
G Gad1 glutamate decarboxylase 1 ISO SMPDB SMP:00072 NCBI chrNW_004936509:1,160,559...1,201,037
Ensembl chrNW_004936509:1,161,094...1,201,576 		JBrowse link
G Gclc glutamate-cysteine ligase catalytic subunit ISO SMPDB SMP:00072 NCBI chrNW_004936476:7,371,270...7,418,756
Ensembl chrNW_004936476:7,371,149...7,418,958 		JBrowse link
G Gfpt1 glutamine--fructose-6-phosphate transaminase 1 ISO SMPDB SMP:00072 NCBI chrNW_004936491:13,603,256...13,665,298
Ensembl chrNW_004936491:13,603,256...13,665,275 		JBrowse link
G Gls2 glutaminase 2 ISO SMPDB SMP:00072 NCBI chrNW_004936646:825,957...842,184
Ensembl chrNW_004936646:823,682...842,199 		JBrowse link
G Glud1 glutamate dehydrogenase 1 ISO SMPDB SMP:00072 NCBI chrNW_004936601:5,415,857...5,435,964 JBrowse link
G Glul glutamate-ammonia ligase ISO SMPDB
RGD		 PMID:28323 PMID:4403443 RGD:2301547 RGD:2301548 SMP:00072 NCBI chrNW_004936481:7,293,301...7,301,416
Ensembl chrNW_004936481:7,293,091...7,306,202 		JBrowse link
G Gmps guanine monophosphate synthase ISO SMPDB SMP:00072 NCBI chrNW_004936519:3,094,763...3,143,322
Ensembl chrNW_004936519:3,104,701...3,141,549 		JBrowse link
G Gnpnat1 glucosamine-phosphate N-acetyltransferase 1 ISO SMPDB SMP:00072 NCBI chrNW_004936697:2,079,396...2,087,602
Ensembl chrNW_004936697:2,079,470...2,086,877 		JBrowse link
G Gpt glutamic--pyruvic transaminase ISO SMPDB SMP:00072 NCBI chrNW_004936470:7,765,810...7,770,837
Ensembl chrNW_004936470:7,765,703...7,768,465 		JBrowse link
G Gsr glutathione-disulfide reductase ISO SMPDB SMP:00072 NCBI chrNW_004936792:531,076...579,083
Ensembl chrNW_004936792:531,756...579,166 		JBrowse link
G Gss glutathione synthetase ISO SMPDB SMP:00072 NCBI chrNW_004936561:5,765,637...5,793,951
Ensembl chrNW_004936561:5,765,610...5,793,567 		JBrowse link
G LOC101977655 glutamate--cysteine ligase regulatory subunit ISO SMPDB SMP:00072 NCBI chrNW_004936537:5,356,914...5,378,998 JBrowse link
G Nadsyn1 NAD synthetase 1 ISO SMPDB SMP:00072 NCBI chrNW_004936794:1,394,975...1,423,807
Ensembl chrNW_004936794:1,396,703...1,423,709 		JBrowse link
G Nagk N-acetylglucosamine kinase ISO SMPDB SMP:00072 NCBI chrNW_004936491:15,183,493...15,193,069
Ensembl chrNW_004936491:15,183,804...15,192,950 		JBrowse link
G Ppat phosphoribosyl pyrophosphate amidotransferase ISO SMPDB SMP:00072 NCBI chrNW_004936482:18,606,124...18,648,989
Ensembl chrNW_004936482:18,606,124...18,648,681 		JBrowse link
G Qars1 glutaminyl-tRNA synthetase 1 ISO SMPDB SMP:00072 NCBI chrNW_004936529:802,753...810,270
Ensembl chrNW_004936529:802,759...810,265 		JBrowse link
glutathione conjugation pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gsto2 glutathione S-transferase omega 2 ISO RGD PMID:10720752 RGD:1358120 NCBI chrNW_004936600:1,907,396...1,925,256
Ensembl chrNW_004936600:1,907,517...1,925,235 		JBrowse link
G Gstp1 glutathione S-transferase pi 1 ISO RGD PMID:11018474 PMID:15110098 RGD:1357965 RGD:1641942 NCBI chrNW_004936599:2,197,681...2,200,642
Ensembl chrNW_004936599:2,197,634...2,201,050 		JBrowse link
G LOC101958062 glutathione S-transferase A4 ISO RGD PMID:10720752 PMID:11018474 RGD:1358120 RGD:1641942 NCBI chrNW_004936476:7,873,218...7,888,301
Ensembl chrNW_004936476:7,873,194...7,889,048 		JBrowse link
glutathione metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anpep alanyl aminopeptidase, membrane ISO SMPDB SMP:00015 NCBI chrNW_004936483:15,563,540...15,582,521
Ensembl chrNW_004936483:15,563,528...15,589,601 		JBrowse link
G Casp7 caspase 7 ISO SMPDB SMP:00015 NCBI chrNW_004936486:4,082,664...4,114,942
Ensembl chrNW_004936486:4,088,372...4,114,955 		JBrowse link
G Gclc glutamate-cysteine ligase catalytic subunit ISO SMPDB
RGD		 PMID:16137247 PMID:16183645 RGD:1582661 RGD:1582663 SMP:00015 NCBI chrNW_004936476:7,371,270...7,418,756
Ensembl chrNW_004936476:7,371,149...7,418,958 		JBrowse link
G Ggct gamma-glutamylcyclotransferase ISO SMPDB SMP:00015 NCBI chrNW_004936478:6,786,392...6,794,088
Ensembl chrNW_004936478:6,785,018...6,794,199 		JBrowse link
G Ggt6 gamma-glutamyltransferase 6 ISO SMPDB SMP:00015 NCBI chrNW_004936677:1,111,203...1,115,131
Ensembl chrNW_004936677:1,111,280...1,114,811 		JBrowse link
G Gpx1 glutathione peroxidase 1 ISO SMPDB SMP:00015 NCBI chrNW_004936529:997,943...999,123
Ensembl chrNW_004936529:998,150...998,987 		JBrowse link
G Gsr glutathione-disulfide reductase ISO SMPDB SMP:00015 NCBI chrNW_004936792:531,076...579,083
Ensembl chrNW_004936792:531,756...579,166 		JBrowse link
G Gss glutathione synthetase ISO SMPDB SMP:00015 NCBI chrNW_004936561:5,765,637...5,793,951
Ensembl chrNW_004936561:5,765,610...5,793,567 		JBrowse link
G Gsto2 glutathione S-transferase omega 2 ISO SMPDB SMP:00015 NCBI chrNW_004936600:1,907,396...1,925,256
Ensembl chrNW_004936600:1,907,517...1,925,235 		JBrowse link
G LOC101977655 glutamate--cysteine ligase regulatory subunit ISO SMPDB
RGD		 PMID:16137247 PMID:16183645 RGD:1582661 RGD:1582663 SMP:00015 NCBI chrNW_004936537:5,356,914...5,378,998 JBrowse link
G Oplah 5-oxoprolinase, ATP-hydrolysing ISO SMPDB SMP:00015 NCBI chrNW_004936470:8,126,677...8,139,556
Ensembl chrNW_004936470:8,130,548...8,143,021 		JBrowse link
glycerolipid metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agpat1 1-acylglycerol-3-phosphate O-acyltransferase 1 ISO SMPDB SMP:00039 NCBI chrNW_004936727:1,425,784...1,434,921
Ensembl chrNW_004936727:1,426,857...1,434,921 		JBrowse link
G Akr1b1 aldo-keto reductase family 1 member B ISO SMPDB SMP:00039 NCBI chrNW_004936579:1,312,175...1,328,397 JBrowse link
G Aldh3a1 aldehyde dehydrogenase 3 family member A1 ISO SMPDB SMP:00039 NCBI chrNW_004936881:71,047...77,543
Ensembl chrNW_004936881:70,951...77,839 		JBrowse link
G Dgka diacylglycerol kinase alpha ISO SMPDB SMP:00039 NCBI chrNW_004936646:351,589...367,985
Ensembl chrNW_004936646:351,414...369,971 		JBrowse link
G Gk glycerol kinase ISO SMPDB SMP:00039 NCBI chrNW_004936553:6,707,148...6,787,245 JBrowse link
G Glyctk glycerate kinase ISO SMPDB SMP:00039 NCBI chrNW_004936529:3,627,194...3,635,568
Ensembl chrNW_004936529:3,628,822...3,635,236 		JBrowse link
G Gpam glycerol-3-phosphate acyltransferase, mitochondrial ISO SMPDB SMP:00039 NCBI chrNW_004936486:2,754,753...2,823,600
Ensembl chrNW_004936486:2,754,751...2,823,665 		JBrowse link
G Gpd1 glycerol-3-phosphate dehydrogenase 1 ISO SMPDB SMP:00039 NCBI chrNW_004936512:7,762,325...7,770,007
Ensembl chrNW_004936512:7,762,643...7,770,309 		JBrowse link
G Gpd2 glycerol-3-phosphate dehydrogenase 2 ISO SMPDB SMP:00039 NCBI chrNW_004936469:21,705,421...21,833,143
Ensembl chrNW_004936469:21,705,421...21,831,745 		JBrowse link
G Lipc lipase C, hepatic type ISO SMPDB SMP:00039 NCBI chrNW_004936471:19,604,083...19,733,721
Ensembl chrNW_004936471:19,703,236...19,733,686 		JBrowse link
G Lpl lipoprotein lipase ISO SMPDB SMP:00039 NCBI chrNW_004936555:4,084,099...4,108,219
Ensembl chrNW_004936555:4,084,099...4,108,365 		JBrowse link
G Plpp1 phospholipid phosphatase 1 ISO SMPDB SMP:00039 NCBI chrNW_004936480:12,265,304...12,357,747
Ensembl chrNW_004936480:12,265,246...12,359,450 		JBrowse link
G Plpp2 phospholipid phosphatase 2 ISO SMPDB SMP:00039 NCBI chrNW_004936588:14,422...20,467
Ensembl chrNW_004936588:14,399...20,514 		JBrowse link
glycerophospholipid metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ache acetylcholinesterase (Cartwright blood group) ISO SMPDB SMP:00025 NCBI chrNW_004936543:856,678...862,080
Ensembl chrNW_004936543:856,676...862,109 		JBrowse link
G Agpat1 1-acylglycerol-3-phosphate O-acyltransferase 1 ISO SMPDB SMP:00025 NCBI chrNW_004936727:1,425,784...1,434,921
Ensembl chrNW_004936727:1,426,857...1,434,921 		JBrowse link
G Cdipt CDP-diacylglycerol--inositol 3-phosphatidyltransferase ISO SMPDB SMP:00025 NCBI chrNW_004936501:12,590,373...12,592,724
Ensembl chrNW_004936501:12,590,373...12,593,419 		JBrowse link
G Cds1 CDP-diacylglycerol synthase 1 ISO SMPDB SMP:00025 NCBI chrNW_004936738:160,346...227,687
Ensembl chrNW_004936738:160,338...227,775 		JBrowse link
G Chat choline O-acetyltransferase ISO SMPDB SMP:00025 NCBI chrNW_004936728:653,654...702,433
Ensembl chrNW_004936728:654,638...700,213 		JBrowse link
G Chka choline kinase alpha ISO SMPDB SMP:00025 NCBI chrNW_004936599:2,031,953...2,068,423
Ensembl chrNW_004936599:2,001,673...2,067,399 		JBrowse link
G Chpt1 choline phosphotransferase 1 ISO SMPDB SMP:00025 NCBI chrNW_004936492:12,325,332...12,358,521
Ensembl chrNW_004936492:12,326,636...12,358,527 		JBrowse link
G Crls1 cardiolipin synthase 1 ISO SMPDB SMP:00025 NCBI chrNW_004936485:13,050,401...13,070,197 JBrowse link
G Dgka diacylglycerol kinase alpha ISO SMPDB SMP:00025 NCBI chrNW_004936646:351,589...367,985
Ensembl chrNW_004936646:351,414...369,971 		JBrowse link
G Gde1 glycerophosphodiester phosphodiesterase 1 ISO SMPDB SMP:00025 NCBI chrNW_004936501:5,177,511...5,193,484
Ensembl chrNW_004936501:5,176,909...5,193,543 		JBrowse link
G Gpam glycerol-3-phosphate acyltransferase, mitochondrial ISO SMPDB SMP:00025 NCBI chrNW_004936486:2,754,753...2,823,600
Ensembl chrNW_004936486:2,754,751...2,823,665 		JBrowse link
G Gpd1 glycerol-3-phosphate dehydrogenase 1 ISO SMPDB SMP:00025 NCBI chrNW_004936512:7,762,325...7,770,007
Ensembl chrNW_004936512:7,762,643...7,770,309 		JBrowse link
G Gpd2 glycerol-3-phosphate dehydrogenase 2 ISO SMPDB SMP:00025 NCBI chrNW_004936469:21,705,421...21,833,143
Ensembl chrNW_004936469:21,705,421...21,831,745 		JBrowse link
G Lypla1 lysophospholipase 1 ISO SMPDB SMP:00025 NCBI chrNW_004936496:937,918...971,315
Ensembl chrNW_004936496:936,763...971,710 		JBrowse link
G Pcyt1a phosphate cytidylyltransferase 1A, choline ISO SMPDB SMP:00025 NCBI chrNW_004936784:884,751...938,901
Ensembl chrNW_004936784:884,751...938,282 		JBrowse link
G Pemt phosphatidylethanolamine N-methyltransferase ISO SMPDB SMP:00025 NCBI chrNW_004936741:1,131,792...1,207,460
Ensembl chrNW_004936741:1,128,616...1,207,499 		JBrowse link
G Pgs1 phosphatidylglycerophosphate synthase 1 ISO SMPDB SMP:00025 NCBI chrNW_004936594:2,934,450...2,989,328
Ensembl chrNW_004936594:2,951,150...2,989,347 		JBrowse link
G Phospho1 phosphoethanolamine/phosphocholine phosphatase 1 ISO SMPDB SMP:00025 NCBI chrNW_004936490:12,272,807...12,280,360
Ensembl chrNW_004936490:12,272,851...12,280,356 		JBrowse link
G Pisd phosphatidylserine decarboxylase ISO SMPDB SMP:00025 NCBI chrNW_004936755:665,416...767,597
Ensembl chrNW_004936755:712,278...767,728 		JBrowse link
G Pla2g15 phospholipase A2 group XV ISO SMPDB SMP:00025 NCBI chrNW_004936475:18,571,599...18,584,977
Ensembl chrNW_004936475:18,571,516...18,585,009 		JBrowse link
G Pla2g2d phospholipase A2 group IID ISO SMPDB SMP:00025 NCBI chrNW_004936474:6,167,507...6,172,750
Ensembl chrNW_004936474:6,167,507...6,172,750 		JBrowse link
G Pla2g4b phospholipase A2 group IVB ISO SMPDB SMP:00025 NCBI chrNW_004936471:5,145,736...5,153,930
Ensembl chrNW_004936471:5,145,502...5,153,498 		JBrowse link
G Pld2 phospholipase D2 ISO SMPDB SMP:00025 NCBI chrNW_004936677:2,870,664...2,883,545
Ensembl chrNW_004936677:2,870,660...2,883,567 		JBrowse link
G Plpp1 phospholipid phosphatase 1 ISO SMPDB SMP:00025 NCBI chrNW_004936480:12,265,304...12,357,747
Ensembl chrNW_004936480:12,265,246...12,359,450