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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term:abnormal substantia nigra size
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Accession:MP:0020541 term browser browse the term
Definition:a deviation from the normal size of the substantia nigra
Synonyms:exact_synonym: abnormal locus niger size;   abnormal nucleus niger size


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decreased substantia nigra size term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G 7630403G23Rik RIKEN cDNA 7630403G23 gene IAGP MGI PMID:16033881 NCBI chr 9:33,953,667...33,970,315
Ensembl chr 9:33,953,665...33,970,315 		JBrowse link
G Bcl2l1 BCL2-like 1 IAGP MGI PMID:16033881 NCBI chr 2:152,600,652...152,673,632
Ensembl chr 2:152,622,588...152,673,648 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 IAGP MGI PMID:17159989 NCBI chr 6:38,664,447...38,853,236
Ensembl chr 6:38,671,325...38,853,099 		JBrowse link
G Otx1 orthodenticle homeobox 1 IAGP MGI PMID:9077465 NCBI chr11:21,944,764...21,954,044
Ensembl chr11:21,944,764...21,952,897 		JBrowse link
G Otx2 orthodenticle homeobox 2 IAGP MGI PMID:9077465 NCBI chr14:48,894,238...48,905,101
Ensembl chr14:48,895,134...48,911,276 		JBrowse link
G Pitx3 paired-like homeodomain transcription factor 3 IAGP MGI PMID:12655058 NCBI chr19:46,123,720...46,136,764
Ensembl chr19:46,124,124...46,136,765 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase IAGP MGI PMID:17623040 NCBI chr17:11,059,227...12,282,257
Ensembl chr17:11,059,271...12,282,248 		JBrowse link
G Sod2 superoxide dismutase 2, mitochondrial IAGP MGI PMID:10762155 NCBI chr17:13,226,726...13,237,006
Ensembl chr17:13,225,733...13,258,950 		JBrowse link
G Trappc9 trafficking protein particle complex 9 IAGP MGI PMID:32877400 NCBI chr15:72,461,469...72,933,086
Ensembl chr15:72,461,469...72,933,053 		JBrowse link
Term paths to the root
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Term Annotations click to browse term
  mammalian phenotype 16725
    nervous system phenotype 4606
      abnormal nervous system morphology 3649
        abnormal brain morphology 2117
          abnormal forebrain morphology 1343
            abnormal basal ganglion morphology 161
              abnormal substantia nigra morphology 35
                abnormal substantia nigra size 9
                  decreased substantia nigra size 9
                  increased substantia nigra size 0
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