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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term:abnormal visceral yolk sac mesenchyme morphology
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Accession:MP:0020516 term browser browse the term
Definition:any structural anomaly of the portion of the visceral yolk sac that is derived from mesoderm and consists of mesenchyme


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abnormal visceral yolk sac mesenchyme morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 IAGP MGI PMID:7657163 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126 		JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 IAGP MGI PMID:8001822 NCBI chr 8:26,008,808...26,067,819
Ensembl chr 8:26,003,670...26,065,734 		JBrowse link
G Foxf1 forkhead box F1 IAGP MGI PMID:17881493 NCBI chr 8:121,811,100...121,814,883
Ensembl chr 8:121,811,125...121,814,883 		JBrowse link
G Ihh Indian hedgehog IAGP MGI PMID:17881493 NCBI chr 1:74,984,474...74,990,831
Ensembl chr 1:74,984,474...74,990,831 		JBrowse link
G Otx2 orthodenticle homeobox 2 IAGP MGI PMID:8565836 NCBI chr14:48,894,238...48,905,101
Ensembl chr14:48,895,134...48,911,276 		JBrowse link
G Setd2 SET domain containing 2 IAGP MGI PMID:20133625 NCBI chr 9:110,361,368...110,447,703
Ensembl chr 9:110,358,262...110,447,701 		JBrowse link
G Shh sonic hedgehog IAGP MGI PMID:17881493 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
G Tbx20 T-box 20 IAGP MGI PMID:15843414 NCBI chr 9:24,632,108...24,685,580
Ensembl chr 9:24,629,434...24,685,599 		JBrowse link
abnormal visceral yolk sac blood island morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casp8 caspase 8 IAGP MGI PMID:21368762 NCBI chr 1:58,834,553...58,886,663
Ensembl chr 1:58,834,533...58,886,662 		JBrowse link
G Cdh5 cadherin 5 IAGP MGI PMID:10207135 NCBI chr 8:104,828,247...104,871,136
Ensembl chr 8:104,828,257...104,871,143 		JBrowse link
G Chm CHM Rab escort protein IAGP MGI PMID:15242790 NCBI chr  X:111,950,289...112,095,236
Ensembl chr  X:111,950,290...112,095,214 		JBrowse link
G Crb2 crumbs family member 2 IAGP MGI PMID:22072575 NCBI chr 2:37,666,238...37,689,115
Ensembl chr 2:37,666,261...37,689,115 		JBrowse link
G Cripto cripto, EGF-CFC family member IAGP MGI PMID:9876177 NCBI chr 9:110,768,676...110,775,226
Ensembl chr 9:110,768,671...110,775,226 		JBrowse link
G Eng endoglin IAGP MGI PMID:10562296 NCBI chr 2:32,536,607...32,572,681
Ensembl chr 2:32,536,607...32,572,681 		JBrowse link
G Fbxw7as1 F-box and WD-40 domain protein 7 antisense transcript 1 IAGP MGI PMID:16293765
G Flt1 FMS-like tyrosine kinase 1 IAGP MGI PMID:7596436 NCBI chr 5:147,498,414...147,663,419
Ensembl chr 5:147,498,414...147,662,821 		JBrowse link
G Furin furin, paired basic amino acid cleaving enzyme IAGP MGI PMID:9811571 NCBI chr 7:80,038,942...80,055,188
Ensembl chr 7:80,038,333...80,055,184 		JBrowse link
G Hus1 HUS1 checkpoint clamp component IAGP MGI PMID:10921903 NCBI chr11:8,943,137...8,961,240
Ensembl chr11:8,943,137...8,961,191 		JBrowse link
G Mttp microsomal triglyceride transfer protein IAGP MGI PMID:9671739 NCBI chr 3:137,795,616...137,849,179
Ensembl chr 3:137,795,615...137,850,729 		JBrowse link
G Npm1 nucleophosmin 1 IAGP MGI PMID:16007073 NCBI chr11:33,102,498...33,114,143
Ensembl chr11:33,102,287...33,113,206 		JBrowse link
G Rapgef2 Rap guanine nucleotide exchange factor (GEF) 2 IAGP MGI PMID:17826737 NCBI chr 3:78,969,818...79,194,681
Ensembl chr 3:78,969,823...79,193,824 		JBrowse link
G Ripk3 receptor-interacting serine-threonine kinase 3 IAGP MGI PMID:21368762 NCBI chr14:56,022,452...56,026,314
Ensembl chr14:56,022,452...56,026,322 		JBrowse link
G Rnf7 ring finger protein 7 IAGP MGI PMID:22118770 NCBI chr 9:96,352,990...96,360,728
Ensembl chr 9:96,352,990...96,360,728 		JBrowse link
G Rnh1 ribonuclease/angiogenin inhibitor 1 IAGP MGI PMID:29408805 NCBI chr 7:140,740,239...140,752,764
Ensembl chr 7:140,740,239...140,752,770 		JBrowse link
G Tnrc6a trinucleotide repeat containing 6a IAGP MGI PMID:22187428 NCBI chr 7:122,630,324...122,794,519
Ensembl chr 7:122,723,108...122,794,519 		JBrowse link
G Vegfa vascular endothelial growth factor A IAGP MGI PMID:8602242 NCBI chr17:46,327,919...46,343,303
Ensembl chr17:46,327,919...46,343,295 		JBrowse link
G Zfat zinc finger and AT hook domain containing IAGP MGI PMID:20660741 NCBI chr15:67,955,563...68,130,771
Ensembl chr15:67,955,613...68,130,705 		JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 IAGP MGI PMID:17013884 NCBI chr12:80,154,534...80,159,787
Ensembl chr12:80,154,528...80,159,787 		JBrowse link
absent visceral yolk sac blood islands term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 IAGP MGI PMID:7657163 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126 		JBrowse link
G Csk c-src tyrosine kinase IAGP MGI PMID:8513497 NCBI chr 9:57,533,929...57,560,758
Ensembl chr 9:57,533,929...57,560,914 		JBrowse link
G Elp1 elongator complex protein 1 IAGP MGI PMID:19015235 NCBI chr 4:56,746,547...56,802,565
Ensembl chr 4:56,749,680...56,802,331 		JBrowse link
G Etv2 ets variant 2 IAGP MGI PMID:18462699 NCBI chr 7:30,333,041...30,335,934
Ensembl chr 7:30,333,041...30,335,277 		JBrowse link
G F5 coagulation factor V IAGP MGI PMID:8900278 NCBI chr 1:163,979,396...164,048,539
Ensembl chr 1:163,979,407...164,047,846 		JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 IAGP MGI PMID:8001822 NCBI chr 8:26,008,808...26,067,819
Ensembl chr 8:26,003,670...26,065,734 		JBrowse link
G Fn1 fibronectin 1 IAGP MGI PMID:8306876 NCBI chr 1:71,624,632...71,692,439
Ensembl chr 1:71,624,679...71,692,359 		JBrowse link
G Kdr kinase insert domain protein receptor IAGP MGI PMID:7596435 PMID:15644447 NCBI chr 5:76,093,487...76,139,880
Ensembl chr 5:76,093,487...76,139,118 		JBrowse link
G Kras Kirsten rat sarcoma viral oncogene homolog IAGP MGI PMID:9334313 NCBI chr 6:145,162,425...145,197,631
Ensembl chr 6:145,162,425...145,195,965 		JBrowse link
G Ldb1 LIM domain binding 1 IAGP MGI PMID:12490556 NCBI chr19:46,019,963...46,036,584
Ensembl chr19:46,020,009...46,033,653 		JBrowse link
G Lmo2 LIM domain only 2 IAGP MGI PMID:8033210 NCBI chr 2:103,788,309...103,812,223
Ensembl chr 2:103,788,331...103,812,223 		JBrowse link
G Nras neuroblastoma ras oncogene IAGP MGI PMID:9334313 NCBI chr 3:102,965,643...102,975,230
Ensembl chr 3:102,965,601...102,975,230 		JBrowse link
G Plcg1 phospholipase C, gamma 1 IAGP MGI PMID:11744703 NCBI chr 2:160,573,230...160,617,680
Ensembl chr 2:160,573,220...160,617,680 		JBrowse link
G Tal1 T cell acute lymphocytic leukemia 1 IAGP MGI PMID:7624372 PMID:7830794 PMID:10572089 NCBI chr 4:114,913,623...114,928,952
Ensembl chr 4:114,913,623...114,928,952 		JBrowse link
G Tfpi tissue factor pathway inhibitor IAGP MGI PMID:9819035 NCBI chr 2:84,263,199...84,307,119
Ensembl chr 2:84,263,199...84,307,119 		JBrowse link
G Yap1 yes-associated protein 1 IAGP MGI PMID:16354681 NCBI chr 9:7,932,000...8,004,890
Ensembl chr 9:7,932,000...8,004,597 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 17094
    embryo phenotype 2533
      abnormal extraembryonic tissue morphology 1004
        abnormal visceral yolk sac morphology 276
          abnormal visceral yolk sac mesenchyme morphology 42
            abnormal visceral yolk sac blood island morphology + 36
paths to the root