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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.

Term:midbrain hypoplasia
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Accession:MP:0012090 term browser browse the term
Definition:decrease in the number of normal cells in normal arrangement in the midbrain, typically resulting in decreased size
Synonyms:exact_synonym: hypoplastic mesencephalon;   hypoplastic midbrain;   mesencephalon hypoplasia



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midbrain hypoplasia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnf cyclin F IAGP MGI PMID:14993286 NCBI chr17:24,441,518...24,470,333
Ensembl chr17:24,441,172...24,470,458
JBrowse link
G E2f1 E2F transcription factor 1 IAGP MGI PMID:35593225 NCBI chr 2:154,401,320...154,411,812
Ensembl chr 2:154,401,327...154,411,812
JBrowse link
G Erf Ets2 repressor factor IAGP MGI PMID:17502352 NCBI chr 7:24,941,985...24,950,522
Ensembl chr 7:24,941,986...24,950,186
JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:34184034 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443
JBrowse link
G Hsd17b7 hydroxysteroid (17-beta) dehydrogenase 7 IAGP MGI PMID:18669642 NCBI chr 1:169,777,109...169,796,757
Ensembl chr 1:169,777,104...169,796,810
JBrowse link
G Otx2 orthodenticle homeobox 2 IAGP MGI PMID:24234651 NCBI chr14:48,894,238...48,905,101
Ensembl chr14:48,895,134...48,911,276
JBrowse link
G Pdss2 prenyl (solanesyl) diphosphate synthase, subunit 2 IAGP MGI PMID:21871565 NCBI chr10:43,095,396...43,340,878
Ensembl chr10:43,097,482...43,340,878
JBrowse link
G Pign phosphatidylinositol glycan anchor biosynthesis, class N IAGP MGI PMID:23213481 NCBI chr 1:105,446,147...105,591,466
Ensembl chr 1:105,446,147...105,591,402
JBrowse link
G Snrpb small nuclear ribonucleoprotein B IAGP MGI PMID:35593225 NCBI chr 2:130,013,560...130,031,184
Ensembl chr 2:130,013,555...130,021,323
JBrowse link
G Srsf3 serine and arginine-rich splicing factor 3 IAGP MGI PMID:34184034 NCBI chr17:29,251,634...29,262,346
Ensembl chr17:29,251,602...29,262,347
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 16699
    nervous system phenotype 4598
      abnormal nervous system morphology 3642
        abnormal brain morphology 2114
          abnormal brain size 521
            decreased brain size 413
              decreased midbrain size 32
                midbrain hypoplasia 10
Path 2
Term Annotations click to browse term
  mammalian phenotype 16699
    nervous system phenotype 4598
      abnormal nervous system morphology 3642
        abnormal brain morphology 2114
          abnormal brainstem morphology 298
            abnormal midbrain morphology 205
              abnormal midbrain size 45
                decreased midbrain size 32
                  midbrain hypoplasia 10
paths to the root