Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term:abnormal vertebral artery morphology
go back to main search page
Accession:MP:0011513 term browser browse the term
Definition:any structural anomaly of the first branch of the left and right subclavian arteries that merge to form the single midline basilar artery; branches of the vertebral arteries supply the musculature of the neck
Synonyms:xref: MA:0002077


show annotations for term's descendants           Sort by:
abnormal vertebral artery morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts3 ADAM metallopeptidase with thrombospondin type 1 motif 3 IEA MGI NCBI chr 5:89,821,700...90,031,521
Ensembl chr 5:89,824,946...90,031,193 		JBrowse link
G Atp11a ATPase, class VI, type 11A IEA MGI NCBI chr 8:12,807,016...12,918,728
Ensembl chr 8:12,807,014...12,918,728 		JBrowse link
G B9d2 B9 protein domain 2 IEA MGI NCBI chr 7:25,380,205...25,385,987
Ensembl chr 7:25,380,205...25,385,983 		JBrowse link
G Dmxl2 Dmx-like 2 IEA MGI NCBI chr 9:54,272,442...54,409,150
Ensembl chr 9:54,272,442...54,408,910 		JBrowse link
G Hoxd3 homeobox D3 IAGP MGI PMID:7910549 NCBI chr 2:74,542,337...74,578,615
Ensembl chr 2:74,542,271...74,578,786 		JBrowse link
G Msx1 msh homeobox 1 IAGP MGI PMID:21693521 NCBI chr 5:37,977,835...37,981,929
Ensembl chr 5:37,977,829...37,981,927 		JBrowse link
G Msx2 msh homeobox 2 IAGP MGI PMID:21693521 NCBI chr13:53,620,917...53,626,816
Ensembl chr13:53,620,920...53,627,110 		JBrowse link
G Prmt7 protein arginine N-methyltransferase 7 IEA MGI NCBI chr 8:106,937,686...106,978,326
Ensembl chr 8:106,937,568...106,979,426 		JBrowse link
G Rala v-ral simian leukemia viral oncogene A (ras related) IEA MGI NCBI chr13:18,055,160...18,118,802
Ensembl chr13:18,055,156...18,118,824 		JBrowse link
G Smpd4 sphingomyelin phosphodiesterase 4 IEA MGI NCBI chr16:17,437,218...17,462,694
Ensembl chr16:17,437,218...17,462,692 		JBrowse link
G Tagln transgelin IAGP MGI PMID:21693521 NCBI chr 9:45,840,926...45,847,356
Ensembl chr 9:45,840,917...45,847,356 		JBrowse link
G Tcf7l2 transcription factor 7 like 2, T cell specific, HMG box IEA MGI NCBI chr19:55,730,227...55,922,091
Ensembl chr19:55,730,252...55,922,086 		JBrowse link
G Tulp4 TUB like protein 4 IAGP MGI PMID:38115643 NCBI chr17:6,156,528...6,290,912
Ensembl chr17:6,156,712...6,301,403 		JBrowse link
G Zmynd11 zinc finger, MYND domain containing 11 IEA MGI NCBI chr13:9,734,872...9,816,050
Ensembl chr13:9,734,869...9,815,366 		JBrowse link
abnormal vertebral artery origin term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx35 DEAH-box helicase 35 IEA MGI NCBI chr 2:158,636,674...158,700,141
Ensembl chr 2:158,636,727...158,700,134 		JBrowse link
G H13 histocompatibility 13 IEA MGI NCBI chr 2:152,511,292...152,550,590
Ensembl chr 2:152,511,381...152,550,590 		JBrowse link
G Morc2a microrchidia 2A IEA MGI NCBI chr11:3,599,132...3,640,477
Ensembl chr11:3,599,191...3,640,477 		JBrowse link
G Npat nuclear protein in the AT region IEA MGI NCBI chr 9:53,448,347...53,486,867
Ensembl chr 9:53,448,347...53,485,642 		JBrowse link
G Psph phosphoserine phosphatase IEA MGI NCBI chr 5:129,842,622...129,864,318
Ensembl chr 5:129,842,622...129,864,513 		JBrowse link
G Rpgrip1l Rpgrip1-like IEA MGI NCBI chr 8:91,943,658...92,039,919
Ensembl chr 8:91,943,658...92,039,890 		JBrowse link
G Sh3pxd2a SH3 and PX domains 2A IEA MGI NCBI chr19:47,248,613...47,453,053
Ensembl chr19:47,248,613...47,452,840 		JBrowse link
abnormal vertebral artery topology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G 1700067K01Rik RIKEN cDNA 1700067K01 gene IEA MGI NCBI chr 8:84,727,145...84,731,399
Ensembl chr 8:84,728,131...84,731,399 		JBrowse link
G 4933434E20Rik RIKEN cDNA 4933434E20 gene IEA MGI NCBI chr 3:89,958,941...89,969,754
Ensembl chr 3:89,958,943...89,970,648
Ensembl chr 3:89,958,943...89,970,648 		JBrowse link
G Adcy9 adenylate cyclase 9 IEA MGI NCBI chr16:4,102,750...4,255,094
Ensembl chr16:4,105,393...4,238,362 		JBrowse link
G B9d2 B9 protein domain 2 IEA MGI NCBI chr 7:25,380,205...25,385,987
Ensembl chr 7:25,380,205...25,385,983 		JBrowse link
G Brd2 bromodomain containing 2 IEA MGI NCBI chr17:34,330,993...34,341,581
Ensembl chr17:34,330,997...34,341,608 		JBrowse link
G Capza2 capping actin protein of muscle Z-line subunit alpha 2 IEA MGI NCBI chr 6:17,637,009...17,666,971
Ensembl chr 6:17,636,233...17,666,971 		JBrowse link
G Cbx6 chromobox 6 IEA MGI NCBI chr15:79,708,099...79,718,534
Ensembl chr15:79,708,097...79,718,889 		JBrowse link
G Cert1 ceramide transporter 1 IEA MGI NCBI chr13:96,679,243...96,782,362
Ensembl chr13:96,679,243...96,776,675 		JBrowse link
G Cfap53 cilia and flagella associated protein 53 IEA MGI NCBI chr18:74,416,171...74,493,055
Ensembl chr18:74,416,161...74,493,057 		JBrowse link
G Chst11 carbohydrate sulfotransferase 11 IEA MGI NCBI chr10:82,820,274...83,031,738
Ensembl chr10:82,821,332...83,031,734 		JBrowse link
G Chtop chromatin target of PRMT1 IEA MGI NCBI chr 3:90,405,846...90,417,400
Ensembl chr 3:90,406,263...90,416,805 		JBrowse link
G Cmip c-Maf inducing protein IEA MGI NCBI chr 8:117,983,758...118,188,245
Ensembl chr 8:117,983,803...118,186,169 		JBrowse link
G Cog6 component of oligomeric golgi complex 6 IEA MGI NCBI chr 3:52,889,544...52,924,644
Ensembl chr 3:52,889,296...52,924,658 		JBrowse link
G Col4a2 collagen, type IV, alpha 2 IEA MGI NCBI chr 8:11,362,878...11,499,287
Ensembl chr 8:11,362,805...11,499,287 		JBrowse link
G Coro1c coronin, actin binding protein 1C IEA MGI NCBI chr 5:113,980,500...114,046,767
Ensembl chr 5:113,980,497...114,046,819 		JBrowse link
G Crim1 cysteine rich transmembrane BMP regulator 1 IEA MGI NCBI chr17:78,507,602...78,684,021
Ensembl chr17:78,507,677...78,684,021 		JBrowse link
G Gas2l2 growth arrest-specific 2 like 2 IEA MGI NCBI chr11:83,312,461...83,320,347
Ensembl chr11:83,312,728...83,320,281 		JBrowse link
G Mybphl myosin binding protein H-like IEA MGI NCBI chr 3:108,272,227...108,287,373
Ensembl chr 3:108,272,227...108,287,373 		JBrowse link
G Npat nuclear protein in the AT region IEA MGI NCBI chr 9:53,448,347...53,486,867
Ensembl chr 9:53,448,347...53,485,642 		JBrowse link
G Nsun2 NOL1/NOP2/Sun domain family member 2 IEA MGI NCBI chr13:69,760,135...69,783,899
Ensembl chr13:69,681,865...69,783,899 		JBrowse link
G Pdzk1 PDZ domain containing 1 IEA MGI NCBI chr 3:96,736,772...96,778,242
Ensembl chr 3:96,736,600...96,778,242 		JBrowse link
G Pierce1 piercer of microtubule wall 1 IEA MGI NCBI chr 2:28,352,013...28,356,336
Ensembl chr 2:28,352,013...28,356,344 		JBrowse link
G Polb polymerase (DNA directed), beta IEA MGI NCBI chr 8:23,118,135...23,143,482
Ensembl chr 8:23,118,142...23,143,451 		JBrowse link
G Pth1r parathyroid hormone 1 receptor IEA MGI NCBI chr 9:110,551,132...110,576,213
Ensembl chr 9:110,551,153...110,576,213 		JBrowse link
G Rala v-ral simian leukemia viral oncogene A (ras related) IEA MGI NCBI chr13:18,055,160...18,118,802
Ensembl chr13:18,055,156...18,118,824 		JBrowse link
G Setd5 SET domain containing 5 IEA MGI NCBI chr 6:113,054,326...113,130,393
Ensembl chr 6:113,054,326...113,130,396 		JBrowse link
G Slc5a7 solute carrier family 5 (choline transporter), member 7 IEA MGI NCBI chr17:54,580,618...54,606,071
Ensembl chr17:54,580,618...54,606,062 		JBrowse link
G Tcf7l2 transcription factor 7 like 2, T cell specific, HMG box IEA MGI NCBI chr19:55,730,227...55,922,091
Ensembl chr19:55,730,252...55,922,086 		JBrowse link
G Tent5c terminal nucleotidyltransferase 5C IEA MGI NCBI chr 3:100,375,373...100,396,508
Ensembl chr 3:100,358,944...100,396,640 		JBrowse link
G Traf6 TNF receptor-associated factor 6 IEA MGI NCBI chr 2:101,508,765...101,532,013
Ensembl chr 2:101,508,774...101,532,014 		JBrowse link
G Trim45 tripartite motif-containing 45 IEA MGI NCBI chr 3:100,828,516...100,844,241
Ensembl chr 3:100,829,518...100,844,236 		JBrowse link
G Xpnpep1 X-prolyl aminopeptidase (aminopeptidase P) 1, soluble IEA MGI NCBI chr19:52,919,710...53,027,093
Ensembl chr19:52,920,357...53,028,645 		JBrowse link
G Zmynd11 zinc finger, MYND domain containing 11 IEA MGI NCBI chr13:9,734,872...9,816,050
Ensembl chr13:9,734,869...9,815,366 		JBrowse link
absent extracranial vertebral artery segment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chtop chromatin target of PRMT1 IEA MGI NCBI chr 3:90,405,846...90,417,400
Ensembl chr 3:90,406,263...90,416,805 		JBrowse link
G Kifbp kinesin family binding protein IEA MGI NCBI chr10:62,394,249...62,414,846
Ensembl chr10:62,374,405...62,414,236 		JBrowse link
G Polb polymerase (DNA directed), beta IEA MGI NCBI chr 8:23,118,135...23,143,482
Ensembl chr 8:23,118,142...23,143,451 		JBrowse link
absent intracranial segment of vertebral artery term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cir1 corepressor interacting with RBPJ, 1 IEA MGI NCBI chr 2:73,113,445...73,142,922
Ensembl chr 2:73,113,449...73,143,045 		JBrowse link
G Morc2a microrchidia 2A IEA MGI NCBI chr11:3,599,132...3,640,477
Ensembl chr11:3,599,191...3,640,477 		JBrowse link
G Rpgrip1l Rpgrip1-like IEA MGI NCBI chr 8:91,943,658...92,039,919
Ensembl chr 8:91,943,658...92,039,890 		JBrowse link
additional anastomosis between intracranial vertebral arteries term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adcy9 adenylate cyclase 9 IEA MGI NCBI chr16:4,102,750...4,255,094
Ensembl chr16:4,105,393...4,238,362 		JBrowse link
G Atp11a ATPase, class VI, type 11A IEA MGI NCBI chr 8:12,807,016...12,918,728
Ensembl chr 8:12,807,014...12,918,728 		JBrowse link
G B9d2 B9 protein domain 2 IEA MGI NCBI chr 7:25,380,205...25,385,987
Ensembl chr 7:25,380,205...25,385,983 		JBrowse link
G Chst11 carbohydrate sulfotransferase 11 IEA MGI NCBI chr10:82,820,274...83,031,738
Ensembl chr10:82,821,332...83,031,734 		JBrowse link
G Cir1 corepressor interacting with RBPJ, 1 IEA MGI NCBI chr 2:73,113,445...73,142,922
Ensembl chr 2:73,113,449...73,143,045 		JBrowse link
G Col4a2 collagen, type IV, alpha 2 IEA MGI NCBI chr 8:11,362,878...11,499,287
Ensembl chr 8:11,362,805...11,499,287 		JBrowse link
G Ehbp1l1 EH domain binding protein 1-like 1 IEA MGI NCBI chr19:5,757,397...5,776,504
Ensembl chr19:5,757,404...5,776,345 		JBrowse link
G Tent5c terminal nucleotidyltransferase 5C IEA MGI NCBI chr 3:100,375,373...100,396,508
Ensembl chr 3:100,358,944...100,396,640 		JBrowse link
G Trim45 tripartite motif-containing 45 IEA MGI NCBI chr 3:100,828,516...100,844,241
Ensembl chr 3:100,829,518...100,844,236 		JBrowse link
anastomosis between common carotid and vertebral artery term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chtop chromatin target of PRMT1 IEA MGI NCBI chr 3:90,405,846...90,417,400
Ensembl chr 3:90,406,263...90,416,805 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 17109
    cardiovascular system phenotype 4128
      abnormal cardiovascular system morphology 3217
        abnormal blood vessel morphology 1788
          abnormal artery morphology 651
            abnormal systemic artery morphology 382
              abnormal vertebral artery morphology 52
                abnormal vertebral artery origin 7
                abnormal vertebral artery topology 33
                absent extracranial vertebral artery segment 3
                absent intracranial segment of vertebral artery 3
                additional anastomosis between intracranial vertebral arteries 9
                anastomosis between common carotid and vertebral artery 1
paths to the root