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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term:abnormal retina apoptosis
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Accession:MP:0006072 term browser browse the term
Definition:change in the timing or the number of cells in the retina undergoing programmed cell death
Synonyms:exact_synonym: abnormal retinal apoptosis


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abnormal retina apoptosis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 IAGP MGI PMID:20081859 NCBI chr10:20,827,274...20,956,328
Ensembl chr10:20,828,446...20,956,328 		JBrowse link
G Asic3 acid-sensing ion channel 3 IAGP MGI PMID:19117938 NCBI chr 5:24,618,449...24,622,836
Ensembl chr 5:24,618,390...24,622,833 		JBrowse link
G Bbs10 Bardet-Biedl syndrome 10 IAGP MGI PMID:26273430 NCBI chr10:111,134,540...111,137,597
Ensembl chr10:111,134,540...111,137,588 		JBrowse link
G Cacna1f calcium channel, voltage-dependent, alpha 1F subunit IAGP MGI PMID:24466230 NCBI chr  X:7,473,342...7,501,435
Ensembl chr  X:7,473,322...7,501,435 		JBrowse link
G Fgf10 fibroblast growth factor 10 IAGP MGI PMID:19407009 NCBI chr13:118,851,199...118,928,651
Ensembl chr13:118,806,327...118,928,651 		JBrowse link
G Fzd5 frizzled class receptor 5 IAGP MGI PMID:18791178 NCBI chr 1:64,769,717...64,776,907
Ensembl chr 1:64,769,717...64,776,910 		JBrowse link
G Grk1 G protein-coupled receptor kinase 1 IAGP MGI PMID:10097103 NCBI chr 8:13,455,081...13,471,951
Ensembl chr 8:13,455,081...13,471,951 		JBrowse link
G Mir124a-1 microRNA 124a-1 IAGP MGI PMID:21857657 NCBI chr14:64,828,106...64,828,190
Ensembl chr14:64,828,106...64,828,190 		JBrowse link
G Mir124a-1hg Mir124-1 host gene (non-protein coding) IAGP MGI PMID:21857657 NCBI chr14:64,825,564...64,831,410
Ensembl chr14:64,824,744...64,831,410 		JBrowse link
G Mmp9 matrix metallopeptidase 9 IAGP MGI PMID:12354772 NCBI chr 2:164,782,246...164,797,770
Ensembl chr 2:164,782,700...164,797,770 		JBrowse link
G Neurod1 neurogenic differentiation 1 IAGP MGI PMID:9834183 NCBI chr 2:79,282,981...79,286,980
Ensembl chr 2:79,282,865...79,287,095 		JBrowse link
G Nphp4 nephronophthisis 4 (juvenile) homolog (human) IAGP MGI PMID:21078623 NCBI chr 4:152,561,163...152,647,641
Ensembl chr 4:152,561,163...152,647,640 		JBrowse link
G Pfdn5 prefoldin 5 IAGP MGI PMID:20956523 NCBI chr15:102,234,551...102,239,925
Ensembl chr15:102,234,551...102,240,308 		JBrowse link
G Rb1 RB transcriptional corepressor 1 IAGP MGI PMID:11076674 PMID:12360286 PMID:15231717 NCBI chr14:73,430,298...73,563,446
Ensembl chr14:73,421,113...73,563,262 		JBrowse link
G Rbl1 RB transcriptional corepressor like 1 IAGP MGI PMID:15231717 NCBI chr 2:156,987,813...157,046,454
Ensembl chr 2:156,987,813...157,046,454 		JBrowse link
G Rbl2 RB transcriptional corepressor like 2 IAGP MGI PMID:15231717 NCBI chr 8:91,796,685...91,850,472
Ensembl chr 8:91,796,685...91,850,472 		JBrowse link
G Rdh12 retinol dehydrogenase 12 IAGP MGI PMID:17032653 NCBI chr12:79,255,687...79,269,438
Ensembl chr12:79,255,688...79,269,439 		JBrowse link
G Slc4a7 solute carrier family 4, sodium bicarbonate cotransporter, member 7 IAGP MGI PMID:12808454 NCBI chr14:7,669,819...7,766,808
Ensembl chr14:7,669,823...7,767,484 		JBrowse link
G Sstr1 somatostatin receptor 1 IAGP MGI PMID:17425570 NCBI chr12:58,258,524...58,262,822
Ensembl chr12:58,258,558...58,260,673 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 IAGP MGI PMID:12838410 NCBI chr 1:186,354,984...186,441,504
Ensembl chr 1:186,354,989...186,438,186 		JBrowse link
G Tgfb3 transforming growth factor, beta 3 IAGP MGI PMID:12838410 NCBI chr12:86,103,517...86,125,815
Ensembl chr12:86,103,519...86,125,815 		JBrowse link
G Trp53 transformation related protein 53 IAGP MGI PMID:11076674 NCBI chr11:69,471,174...69,482,699
Ensembl chr11:69,471,185...69,482,699 		JBrowse link
decreased retina apoptosis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crb1 crumbs family member 1, photoreceptor morphogenesis associated IAGP MGI PMID:24339791 NCBI chr 1:139,101,288...139,307,262
Ensembl chr 1:139,124,794...139,304,838 		JBrowse link
G Crb2 crumbs family member 2 IAGP MGI PMID:24339791 NCBI chr 2:37,666,238...37,689,115
Ensembl chr 2:37,666,261...37,689,115 		JBrowse link
G Ddit4 DNA-damage-inducible transcript 4 IAGP MGI PMID:15452091 NCBI chr10:59,785,497...59,787,592
Ensembl chr10:59,785,491...59,787,656 		JBrowse link
G Plat plasminogen activator, tissue IAGP MGI PMID:15451307 NCBI chr 8:23,247,655...23,272,864
Ensembl chr 8:23,247,743...23,272,860 		JBrowse link
G Rb1 RB transcriptional corepressor 1 IAGP MGI PMID:12360286 NCBI chr14:73,430,298...73,563,446
Ensembl chr14:73,421,113...73,563,262 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 IAGP MGI PMID:12838410 NCBI chr 1:186,354,984...186,441,504
Ensembl chr 1:186,354,989...186,438,186 		JBrowse link
G Tgfb3 transforming growth factor, beta 3 IAGP MGI PMID:12838410 NCBI chr12:86,103,517...86,125,815
Ensembl chr12:86,103,519...86,125,815 		JBrowse link
G Tgfbi transforming growth factor, beta induced IAGP MGI PMID:26387839 NCBI chr13:56,757,399...56,787,172
Ensembl chr13:56,757,336...56,787,375 		JBrowse link
G Zfp110 zinc finger protein 110 IAGP MGI PMID:10545116 NCBI chr 7:12,565,225...12,584,513
Ensembl chr 7:12,568,688...12,584,504 		JBrowse link
increased retina apoptosis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahr aryl-hydrocarbon receptor IAGP MGI PMID:29726989 NCBI chr12:35,547,978...35,584,988
Ensembl chr12:35,547,973...35,585,037 		JBrowse link
G Ascl1 achaete-scute family bHLH transcription factor 1 IAGP MGI PMID:15105417 NCBI chr10:87,326,681...87,329,522
Ensembl chr10:87,326,681...87,329,522 		JBrowse link
G Asrgl1 asparaginase like 1 IAGP MGI PMID:35118070 NCBI chr19:9,089,083...9,112,930
Ensembl chr19:9,087,232...9,113,000 		JBrowse link
G Atoh7 atonal bHLH transcription factor 7 IAGP MGI PMID:18321480 PMID:18787067 PMID:23481413 NCBI chr10:62,935,564...62,937,059
Ensembl chr10:62,935,430...62,937,058 		JBrowse link
G Atp1b2 ATPase, Na+/K+ transporting, beta 2 polypeptide IAGP MGI PMID:9801359 NCBI chr11:69,490,554...69,496,786
Ensembl chr11:69,490,562...69,496,768 		JBrowse link
G Atrip ATR interacting protein IAGP MGI PMID:32994318 NCBI chr 9:108,888,815...108,903,192
Ensembl chr 9:108,887,001...108,903,192 		JBrowse link
G Bhlhe23 basic helix-loop-helix family, member e23 IAGP MGI PMID:15363390 NCBI chr 2:180,416,174...180,418,693
Ensembl chr 2:180,416,174...180,418,693 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor, type 1A IAGP MGI PMID:15673568 NCBI chr14:34,133,018...34,225,335
Ensembl chr14:34,132,691...34,225,298 		JBrowse link
G Bmpr1b bone morphogenetic protein receptor, type 1B IAGP MGI PMID:12654290 PMID:15673568 NCBI chr 3:141,540,230...141,875,335
Ensembl chr 3:141,542,897...141,875,186 		JBrowse link
G C3ar1 complement component 3a receptor 1 IAGP MGI PMID:23074214 NCBI chr 6:122,824,099...122,833,116
Ensembl chr 6:122,824,097...122,833,120 		JBrowse link
G C5ar1 complement component 5a receptor 1 IAGP MGI PMID:23074214 NCBI chr 7:15,980,668...15,993,465
Ensembl chr 7:15,980,668...15,993,465 		JBrowse link
G Cacna1f calcium channel, voltage-dependent, alpha 1F subunit IAGP MGI PMID:24466230 NCBI chr  X:7,473,342...7,501,435
Ensembl chr  X:7,473,322...7,501,435 		JBrowse link
G Cerkl ceramide kinase-like IAGP MGI PMID:22549043 NCBI chr 2:79,162,835...79,259,332
Ensembl chr 2:79,160,887...79,287,129 		JBrowse link
G Cngb3 cyclic nucleotide gated channel beta 3 IAGP MGI PMID:19767295 NCBI chr 4:19,280,850...19,510,623
Ensembl chr 4:19,280,850...19,510,623 		JBrowse link
G Crb1 crumbs family member 1, photoreceptor morphogenesis associated IAGP MGI PMID:24339791 NCBI chr 1:139,101,288...139,307,262
Ensembl chr 1:139,124,794...139,304,838 		JBrowse link
G Crb2 crumbs family member 2 IAGP MGI PMID:24339791 NCBI chr 2:37,666,238...37,689,115
Ensembl chr 2:37,666,261...37,689,115 		JBrowse link
G Emc1 ER membrane protein complex subunit 1 IAGP MGI PMID:37098815 NCBI chr 4:139,079,898...139,106,046
Ensembl chr 4:139,079,898...139,106,041 		JBrowse link
G Eomes eomesodermin IAGP MGI PMID:18077589 NCBI chr 9:118,307,259...118,315,176
Ensembl chr 9:118,307,280...118,315,200 		JBrowse link
G Epg5 ectopic P-granules 5 autophagy tethering factor IAGP MGI PMID:27715390 NCBI chr18:77,981,618...78,080,539
Ensembl chr18:77,981,680...78,078,228 		JBrowse link
G Ercc1 excision repair cross-complementing rodent repair deficiency, complementation group 1 IAGP MGI PMID:22257940 NCBI chr 7:19,079,016...19,090,449
Ensembl chr 7:19,078,703...19,090,449 		JBrowse link
G Fam161a family with sequence similarity 161, member A IAGP MGI PMID:24833722 NCBI chr11:22,956,725...22,995,743
Ensembl chr11:22,957,531...22,980,788 		JBrowse link
G Fasl Fas ligand IAGP MGI PMID:21479271 NCBI chr 1:161,608,260...161,616,064
Ensembl chr 1:161,608,258...161,616,064 		JBrowse link
G Foxg1 forkhead box G1 IAGP MGI PMID:26107939 NCBI chr12:49,429,666...49,433,650
Ensembl chr12:49,429,443...49,433,644 		JBrowse link
G Foxn4 forkhead box N4 IAGP MGI PMID:15363391 NCBI chr 5:114,392,225...114,412,486
Ensembl chr 5:114,392,225...114,411,868 		JBrowse link
G Fzd5 frizzled class receptor 5 IAGP MGI PMID:18489003 NCBI chr 1:64,769,717...64,776,907
Ensembl chr 1:64,769,717...64,776,910 		JBrowse link
G Gpr75 G protein-coupled receptor 75 IAGP MGI PMID:37840219 NCBI chr11:30,834,636...30,846,090
Ensembl chr11:30,835,358...30,843,729 		JBrowse link
G Hcar1 hydrocarboxylic acid receptor 1 IAGP MGI PMID:31220454 NCBI chr 5:124,014,802...124,018,066
Ensembl chr 5:124,014,799...124,018,083 		JBrowse link
G Hsp90aa1 heat shock protein 90, alpha (cytosolic), class A member 1 IAGP MGI PMID:31408169 NCBI chr12:110,657,470...110,662,829
Ensembl chr12:110,657,039...110,669,162 		JBrowse link
G Ins2 insulin II IAGP MGI PMID:15914643 NCBI chr 7:142,232,393...142,233,463
Ensembl chr 7:142,232,393...142,297,118 		JBrowse link
G Isl1 ISL1 transcription factor, LIM/homeodomain IAGP MGI PMID:18460603 NCBI chr13:116,434,806...116,446,224
Ensembl chr13:116,434,817...116,446,225 		JBrowse link
G Kcnv2 potassium channel, subfamily V, member 2 IAGP MGI PMID:30820446 NCBI chr19:27,299,461...27,314,579
Ensembl chr19:27,299,988...27,314,579 		JBrowse link
G Kidins220 kinase D-interacting substrate 220 IAGP MGI PMID:22048155 NCBI chr12:25,024,909...25,113,151
Ensembl chr12:25,024,924...25,113,151 		JBrowse link
G Lamb2 laminin, beta 2 IAGP MGI PMID:10531444 NCBI chr 9:108,357,080...108,367,729
Ensembl chr 9:108,356,935...108,367,729 		JBrowse link
G Lrp2 low density lipoprotein receptor-related protein 2 IAGP MGI PMID:26107939 NCBI chr 2:69,254,679...69,416,373
Ensembl chr 2:69,254,684...69,416,409 		JBrowse link
G Map3k1 mitogen-activated protein kinase kinase kinase 1 IAGP MGI PMID:21862560 NCBI chr13:111,882,962...111,954,803
Ensembl chr13:111,882,962...111,945,527 		JBrowse link
G Mertk MER proto-oncogene tyrosine kinase IAGP MGI PMID:21436282 NCBI chr 2:128,540,836...128,645,082
Ensembl chr 2:128,540,876...128,644,814 		JBrowse link
G Msi1 musashi RNA-binding protein 1 IAGP MGI PMID:18662689 NCBI chr 5:115,567,734...115,593,757
Ensembl chr 5:115,567,658...115,593,757 		JBrowse link
G Neurod1 neurogenic differentiation 1 IAGP MGI PMID:15105417 NCBI chr 2:79,282,981...79,286,980
Ensembl chr 2:79,282,865...79,287,095 		JBrowse link
G Neurod4 neurogenic differentiation 4 IAGP MGI PMID:15105417 NCBI chr10:130,104,021...130,116,123
Ensembl chr10:130,104,021...130,116,109 		JBrowse link
G Neurog2 neurogenin 2 IAGP MGI PMID:15105417 NCBI chr 3:127,426,382...127,429,285
Ensembl chr 3:127,426,784...127,429,280 		JBrowse link
G Nr2e3 nuclear receptor subfamily 2, group E, member 3 IAGP MGI PMID:18763016 NCBI chr 9:59,850,054...59,868,117
Ensembl chr 9:59,850,054...59,867,942 		JBrowse link
G Optn optineurin IAGP MGI PMID:33723228 NCBI chr 2:5,023,902...5,069,210
Ensembl chr 2:5,025,453...5,068,862 		JBrowse link
G Pals1 protein associated with LIN7 1, MAGUK family member IAGP MGI PMID:22398208 NCBI chr12:78,795,606...78,887,488
Ensembl chr12:78,795,681...78,887,488 		JBrowse link
G Pax6 paired box 6 IAGP MGI PMID:24523460 NCBI chr 2:105,499,241...105,528,755
Ensembl chr 2:105,499,245...105,527,709 		JBrowse link
G Pdgfrb platelet derived growth factor receptor, beta polypeptide IAGP MGI PMID:23633653 NCBI chr18:61,178,194...61,218,139
Ensembl chr18:61,178,222...61,218,133 		JBrowse link
G Pou4f2 POU domain, class 4, transcription factor 2 IAGP MGI PMID:15647317 PMID:18321480 NCBI chr 8:79,159,638...79,163,276
Ensembl chr 8:79,159,639...79,163,274 		JBrowse link
G Prph2 peripherin 2 IAGP MGI PMID:11978760 PMID:18763016 NCBI chr17:47,221,404...47,235,859
Ensembl chr17:47,221,385...47,235,859 		JBrowse link
G Rb1 RB transcriptional corepressor 1 IAGP MGI PMID:15231717 PMID:17235288 NCBI chr14:73,430,298...73,563,446
Ensembl chr14:73,421,113...73,563,262 		JBrowse link
G Rbl2 RB transcriptional corepressor like 2 IAGP MGI PMID:17235288 NCBI chr 8:91,796,685...91,850,472
Ensembl chr 8:91,796,685...91,850,472 		JBrowse link
G Rho rhodopsin IAGP MGI PMID:19741247 PMID:20207741 PMID:23940033 NCBI chr 6:115,903,741...115,916,999
Ensembl chr 6:115,908,709...115,916,997 		JBrowse link
G Sdccag8 serologically defined colon cancer antigen 8 IAGP MGI PMID:35503560 NCBI chr 1:176,642,226...176,848,004
Ensembl chr 1:176,642,226...176,848,003 		JBrowse link
G Sema4a sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A IAGP MGI PMID:17409257 PMID:23360997 NCBI chr 3:88,343,266...88,368,500
Ensembl chr 3:88,343,266...88,368,489 		JBrowse link
G Slc4a3 solute carrier family 4 (anion exchanger), member 3 IAGP MGI PMID:17786210 NCBI chr 1:75,522,688...75,536,075
Ensembl chr 1:75,522,910...75,538,816 		JBrowse link
G Sox11 SRY (sex determining region Y)-box 11 IAGP MGI PMID:23649630 NCBI chr12:27,384,267...27,392,717
Ensembl chr12:27,384,263...27,392,573 		JBrowse link
G Sox4 SRY (sex determining region Y)-box 4 IAGP MGI PMID:23649630 NCBI chr13:29,132,902...29,137,682
Ensembl chr13:29,132,902...29,137,696 		JBrowse link
G Srsf1 serine and arginine-rich splicing factor 1 IAGP MGI PMID:18987029 NCBI chr11:87,937,325...87,944,583
Ensembl chr11:87,938,199...87,944,581 		JBrowse link
G Stk38 serine/threonine kinase 38 IAGP MGI PMID:30135513 NCBI chr17:29,189,854...29,226,979
Ensembl chr17:29,189,854...29,226,969 		JBrowse link
G Stk38l serine/threonine kinase 38 like IAGP MGI PMID:30135513 NCBI chr 6:146,626,428...146,680,312
Ensembl chr 6:146,626,493...146,680,310 		JBrowse link
G Syne2 spectrin repeat containing, nuclear envelope 2 IAGP MGI PMID:26066746 NCBI chr12:75,865,092...76,157,702
Ensembl chr12:75,864,908...76,157,700 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor II IAGP MGI PMID:25857227 NCBI chr 9:115,916,763...116,004,431
Ensembl chr 9:115,913,361...116,004,428 		JBrowse link
G Trp53 transformation related protein 53 IAGP MGI PMID:15231717 NCBI chr11:69,471,174...69,482,699
Ensembl chr11:69,471,185...69,482,699 		JBrowse link
G Tub TUB bipartite transcription factor IAGP MGI PMID:10629044 NCBI chr 7:108,610,087...108,633,666
Ensembl chr 7:108,549,545...108,633,667 		JBrowse link
G Tulp1 TUB like protein 1 IAGP MGI PMID:10607826 NCBI chr17:28,570,489...28,584,190
Ensembl chr17:28,570,489...28,584,196 		JBrowse link
G Uchl3 ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase) IAGP MGI PMID:16816367 NCBI chr14:101,891,387...101,933,561
Ensembl chr14:101,891,403...101,933,561 		JBrowse link
G Xrcc5 X-ray repair complementing defective repair in Chinese hamster cells 5 IAGP MGI PMID:14642570 NCBI chr 1:72,346,576...72,434,112
Ensembl chr 1:72,346,586...72,434,111 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 16725
    vision/eye phenotype 3065
      abnormal eye physiology 715
        abnormal retina apoptosis 85
          decreased retina apoptosis 9
          increased retina apoptosis 65
Path 2
Term Annotations click to browse term
  mammalian phenotype 16725
    cellular phenotype 5389
      abnormal cell physiology 4788
        abnormal cell death 2115
          abnormal programmed cell death 1730
            abnormal apoptosis 1724
              abnormal retina apoptosis 85
                decreased retina apoptosis 9
                increased retina apoptosis 65
paths to the root