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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.

Term:abnormal basal ganglion morphology
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Accession:MP:0006007 term browser browse the term
Definition:any structural anomaly of any of a group of nuclei associated with the ability to carry out willed movements, including the caudate, putamen, nucleus accumbens, globus pallidus, substantia nigra, and subthalamic nucleus
Synonyms:exact_synonym: abnormal basal ganglia morphology



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abnormal basal ganglion morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs2 Bardet-Biedl syndrome 2 (human) IAGP MGI PMID:18032602 NCBI chr 8:94,794,580...94,825,997
Ensembl chr 8:94,794,582...94,825,556
JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 (human) IAGP MGI PMID:18032602 NCBI chr 9:59,229,249...59,260,791
Ensembl chr 9:59,229,273...59,260,791
JBrowse link
G Chmp1a charged multivesicular body protein 1A IAGP MGI PMID:30044992 NCBI chr 8:123,931,000...123,939,527
Ensembl chr 8:123,931,003...123,939,502
JBrowse link
G Cln3 ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease) IAGP MGI PMID:10527801 NCBI chr 7:126,170,379...126,184,989
Ensembl chr 7:126,170,379...126,184,989
JBrowse link
G Foxg1 forkhead box G1 IAGP MGI PMID:12151532 PMID:17470284 NCBI chr12:49,429,666...49,433,650
Ensembl chr12:49,429,443...49,433,644
JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:19270687 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294
JBrowse link
G Htra2 HtrA serine peptidase 2 IAGP MGI PMID:15509788 NCBI chr 6:83,028,247...83,031,552
Ensembl chr 6:83,028,247...83,032,254
JBrowse link
G Id4 inhibitor of DNA binding 4 IAGP MGI PMID:15882580 NCBI chr13:48,414,592...48,419,504
Ensembl chr13:48,414,704...48,419,502
JBrowse link
G Lhx2 LIM homeobox protein 2 IAGP MGI PMID:9247336 NCBI chr 2:38,229,226...38,259,749
Ensembl chr 2:38,229,293...38,259,745
JBrowse link
G Ocln occludin IAGP MGI PMID:11102513 NCBI chr13:100,633,012...100,689,226
Ensembl chr13:100,633,015...100,689,226
JBrowse link
G Ppargc1a peroxisome proliferative activated receptor, gamma, coactivator 1 alpha IAGP MGI PMID:15760270 NCBI chr 5:51,611,591...52,273,337
Ensembl chr 5:51,611,592...51,725,068
JBrowse link
G Rfx4 regulatory factor X, 4 (influences HLA class II expression) IAGP MGI PMID:12925582 NCBI chr10:84,591,895...84,742,402
Ensembl chr10:84,591,926...84,742,402
JBrowse link
G Serac1 serine active site containing 1 IAGP MGI PMID:35235340 NCBI chr17:6,090,846...6,130,064
Ensembl chr17:6,092,471...6,130,016
JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 IAGP MGI PMID:27161151 NCBI chr15:89,376,929...89,444,464
Ensembl chr15:89,383,826...89,444,464
JBrowse link
G Slc20a2 solute carrier family 20, member 2 IAGP MGI PMID:23934451 NCBI chr 8:22,966,716...23,059,632
Ensembl chr 8:22,966,804...23,059,628
JBrowse link
G Sp8 trans-acting transcription factor 8 IAGP MGI PMID:17470284 NCBI chr12:118,809,968...118,816,313
Ensembl chr12:118,810,064...118,816,311
JBrowse link
G Tmem67 transmembrane protein 67 IAGP MGI PMID:23283079 NCBI chr 4:12,039,355...12,090,020
Ensembl chr 4:12,039,355...12,090,020
JBrowse link
G Tuba1a tubulin, alpha 1A IAGP MGI PMID:31386652 NCBI chr15:98,847,728...98,851,382
Ensembl chr15:98,847,718...98,851,584
JBrowse link
G Tubb2b tubulin, beta 2B class IIB IAGP MGI PMID:23727838 NCBI chr13:34,310,991...34,314,337
Ensembl chr13:34,310,731...34,314,449
JBrowse link
G Tubb3 tubulin, beta 3 class III IAGP MGI PMID:20074521 NCBI chr 8:124,138,292...124,148,754
Ensembl chr 8:124,138,163...124,148,754
JBrowse link
G Tymp thymidine phosphorylase IAGP MGI PMID:19028666 NCBI chr15:89,255,834...89,261,239
Ensembl chr15:89,256,134...89,261,242
JBrowse link
G Upp1 uridine phosphorylase 1 IAGP MGI PMID:19028666 NCBI chr11:9,068,008...9,086,170
Ensembl chr11:9,068,103...9,086,170
JBrowse link
G Zic3 zinc finger protein of the cerebellum 3 IAGP MGI PMID:11959836 NCBI chr  X:57,075,988...57,081,990
Ensembl chr  X:57,068,060...57,087,096
JBrowse link
G Zic5 zinc finger protein of the cerebellum 5 IAGP MGI PMID:15136147 NCBI chr14:122,696,572...122,703,127
Ensembl chr14:122,694,207...122,703,089
JBrowse link
abnormal dorsal striatum morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc6 excision repair cross-complementing rodent repair deficiency, complementation group 6 IAGP MGI PMID:22174697 NCBI chr14:32,235,248...32,302,947
Ensembl chr14:32,235,478...32,302,947
JBrowse link
G Gdnf glial cell line derived neurotrophic factor IAGP MGI PMID:18536709 NCBI chr15:7,839,529...7,867,061
Ensembl chr15:7,840,327...7,867,056
JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:22914740 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294
JBrowse link
G Htt huntingtin IAGP MGI PMID:17715336 NCBI chr 5:34,919,084...35,069,878
Ensembl chr 5:34,919,084...35,069,878
JBrowse link
G Ireb2 iron responsive element binding protein 2 IAGP MGI PMID:24896637 NCBI chr 9:54,769,942...54,819,818
Ensembl chr 9:54,771,073...54,819,814
JBrowse link
G Jakmip1 janus kinase and microtubule interacting protein 1 IAGP MGI PMID:26627310 NCBI chr 5:37,182,424...37,307,958
Ensembl chr 5:37,185,679...37,307,951
Ensembl chr 5:37,185,679...37,307,951
JBrowse link
G Lhx8 LIM homeobox protein 8 IAGP MGI PMID:15978004 NCBI chr 3:154,011,925...154,036,197
Ensembl chr 3:154,011,931...154,036,296
JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 IAGP MGI PMID:34658337 NCBI chr15:91,556,994...91,700,327
Ensembl chr15:91,557,378...91,700,323
JBrowse link
G Lynx1 Ly6/neurotoxin 1 IAGP MGI PMID:16950157 NCBI chr15:74,619,705...74,624,828
Ensembl chr15:74,619,701...74,624,895
JBrowse link
G Mfn2 mitofusin 2 IAGP MGI PMID:22914740 NCBI chr 4:147,958,043...147,989,527
Ensembl chr 4:147,958,056...147,989,161
JBrowse link
G Nr2f1 nuclear receptor subfamily 2, group F, member 1 IAGP MGI PMID:31600777 NCBI chr13:78,337,090...78,346,992
Ensembl chr13:78,337,092...78,347,876
JBrowse link
G Pitx3 paired-like homeodomain transcription factor 3 IAGP MGI PMID:12829322 NCBI chr19:46,123,720...46,136,764
Ensembl chr19:46,124,124...46,136,765
JBrowse link
G Ppm1l protein phosphatase 1 (formerly 2C)-like IAGP MGI PMID:27680501 NCBI chr 3:69,224,251...69,468,131
Ensembl chr 3:69,224,194...69,468,135
JBrowse link
G Slc6a3 solute carrier family 6 (neurotransmitter transporter, dopamine), member 3 IAGP MGI PMID:22914740 NCBI chr13:73,684,270...73,726,791
Ensembl chr13:73,684,866...73,726,791
JBrowse link
G Tor1a torsin family 1, member A (torsin A) IAGP MGI PMID:21464304 NCBI chr 2:30,850,573...30,857,930
Ensembl chr 2:30,850,639...30,857,945
JBrowse link
G Trim67 tripartite motif-containing 67 IAGP MGI PMID:29911180 NCBI chr 8:125,518,056...125,561,452
Ensembl chr 8:125,519,831...125,561,452
JBrowse link
G Vangl2 VANGL planar cell polarity 2 IAGP MGI PMID:4230658 NCBI chr 1:171,828,527...171,856,532
Ensembl chr 1:171,828,527...171,856,011
JBrowse link
G Wasl WASP like actin nucleation promoting factor IAGP MGI PMID:24462670 NCBI chr 6:24,613,809...24,665,185
Ensembl chr 6:24,613,804...24,665,008
JBrowse link
G Xpa xeroderma pigmentosum, complementation group A IAGP MGI PMID:22174697 NCBI chr 4:46,175,222...46,196,345
Ensembl chr 4:46,155,347...46,196,311
JBrowse link
G Zfp597 zinc finger protein 597 IAGP MGI PMID:19968752 NCBI chr16:3,679,408...3,702,241
Ensembl chr16:3,676,185...3,702,425
JBrowse link
abnormal globus pallidus morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celsr3 cadherin, EGF LAG seven-pass G-type receptor 3 IAGP MGI PMID:15778712 PMID:19332558 NCBI chr 9:108,703,244...108,730,168
Ensembl chr 9:108,703,519...108,730,168
JBrowse link
G Ctnnb1 catenin (cadherin associated protein), beta 1 IAGP MGI PMID:24614104 NCBI chr 9:120,762,466...120,789,573
Ensembl chr 9:120,758,282...120,789,573
JBrowse link
G Htt huntingtin IAGP MGI PMID:7774020 NCBI chr 5:34,919,084...35,069,878
Ensembl chr 5:34,919,084...35,069,878
JBrowse link
G Man2b1 mannosidase 2, alpha B1 IAGP MGI PMID:16014715 NCBI chr 8:85,809,387...85,825,368
Ensembl chr 8:85,809,899...85,824,911
JBrowse link
G Mir9-2 microRNA 9-2 IAGP MGI PMID:21368052 NCBI chr13:83,886,933...83,887,004
Ensembl chr13:83,886,933...83,887,004
JBrowse link
G Mir9-3 microRNA 9-3 IAGP MGI PMID:21368052 NCBI chr 7:79,155,012...79,155,101
Ensembl chr 7:79,155,012...79,155,101
JBrowse link
G Pdzd8 PDZ domain containing 8 IAGP MGI PMID:35227461 NCBI chr19:59,284,516...59,334,212
Ensembl chr19:59,285,610...59,334,212
JBrowse link
G Zdhhc13 zinc finger, DHHC domain containing 13 IAGP MGI PMID:23077216 NCBI chr 7:48,438,751...48,477,188
Ensembl chr 7:48,438,751...48,477,188
JBrowse link
G Zic5 zinc finger protein of the cerebellum 5 IAGP MGI PMID:15736266 NCBI chr14:122,696,572...122,703,127
Ensembl chr14:122,694,207...122,703,089
JBrowse link
abnormal medium spiny neuron morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdnf brain derived neurotrophic factor IAGP MGI PMID:15115821 NCBI chr 2:109,505,045...109,557,388
Ensembl chr 2:109,505,045...109,557,352
JBrowse link
G Clock circadian locomotor output cycles kaput IAGP MGI PMID:21123577 NCBI chr 5:76,357,715...76,452,675
Ensembl chr 5:76,357,715...76,452,639
JBrowse link
G Emx1 empty spiracles homeobox 1 IAGP MGI PMID:15115821 NCBI chr 6:85,164,913...85,181,445
Ensembl chr 6:85,164,420...85,181,444
JBrowse link
G Eno2 enolase 2, gamma neuronal IAGP MGI PMID:19132103 NCBI chr 6:124,737,016...124,746,636
Ensembl chr 6:124,737,016...124,746,636
JBrowse link
G Gng7 guanine nucleotide binding protein (G protein), gamma 7 IAGP MGI PMID:19132103 NCBI chr10:80,784,458...80,850,794
Ensembl chr10:80,784,458...80,850,779
JBrowse link
G Gprin3 GPRIN family member 3 IAGP MGI PMID:31363062 NCBI chr 6:59,317,988...59,403,291
Ensembl chr 6:59,324,211...59,403,279
JBrowse link
G Grin1 glutamate receptor, ionotropic, NMDA1 (zeta 1) IAGP MGI PMID:17015831 NCBI chr 2:25,181,189...25,209,199
Ensembl chr 2:25,181,193...25,209,199
JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:26025364 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294
JBrowse link
G Htt huntingtin IAGP MGI PMID:10699173 NCBI chr 5:34,919,084...35,069,878
Ensembl chr 5:34,919,084...35,069,878
JBrowse link
G Rgs9 regulator of G-protein signaling 9 IAGP MGI PMID:17015831 PMID:26642438 NCBI chr11:109,116,174...109,189,013
Ensembl chr11:109,116,181...109,188,955
JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 IAGP MGI PMID:21423165 PMID:26886798 NCBI chr15:89,376,929...89,444,464
Ensembl chr15:89,383,826...89,444,464
JBrowse link
G Slitrk5 SLIT and NTRK-like family, member 5 IAGP MGI PMID:20418887 NCBI chr14:111,912,547...111,920,576
Ensembl chr14:111,912,529...111,920,573
JBrowse link
G Sp9 trans-acting transcription factor 9 IAGP MGI PMID:27452460 NCBI chr 2:73,094,805...73,106,115
Ensembl chr 2:73,102,269...73,115,050
JBrowse link
G Zswim6 zinc finger SWIM-type containing 6 IAGP MGI PMID:28433741 NCBI chr13:107,861,152...108,026,598
Ensembl chr13:107,861,152...108,026,598
JBrowse link
abnormal nucleus accumbens morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd81 CD81 antigen IAGP MGI PMID:11376857 NCBI chr 7:142,606,487...142,621,667
Ensembl chr 7:142,606,476...142,621,671
JBrowse link
G Clock circadian locomotor output cycles kaput IAGP MGI PMID:21123577 NCBI chr 5:76,357,715...76,452,675
Ensembl chr 5:76,357,715...76,452,639
JBrowse link
G Sox1 SRY (sex determining region Y)-box 1 IAGP MGI PMID:15882093 NCBI chr 8:12,445,519...12,449,555
Ensembl chr 8:12,445,295...12,450,126
JBrowse link
abnormal putamen morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsf1 heat shock factor 1 IAGP MGI PMID:15183515 NCBI chr15:76,361,562...76,385,355
Ensembl chr15:76,361,622...76,386,113
JBrowse link
G Pdha1 pyruvate dehydrogenase E1 alpha 1 IAGP MGI PMID:15569252 NCBI chr  X:158,905,215...158,921,426
Ensembl chr  X:158,905,205...158,921,409
JBrowse link
G Tubb5 tubulin, beta 5 class I IAGP MGI PMID:26903504 NCBI chr17:36,144,812...36,149,193
Ensembl chr17:36,144,813...36,149,198
JBrowse link
abnormal striatum morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arx aristaless related homeobox IAGP MGI PMID:19587282 NCBI chr  X:92,330,113...92,341,963
Ensembl chr  X:92,330,051...92,341,963
JBrowse link
G Ascl1 achaete-scute family bHLH transcription factor 1 IAGP MGI PMID:19208224 NCBI chr10:87,326,681...87,329,522
Ensembl chr10:87,326,681...87,329,522
JBrowse link
G Bdnf brain derived neurotrophic factor IAGP MGI PMID:16478623 NCBI chr 2:109,505,045...109,557,388
Ensembl chr 2:109,505,045...109,557,352
JBrowse link
G Cbarp calcium channel, voltage-dependent, beta subunit associated regulatory protein IAGP MGI PMID:30673609 NCBI chr10:79,966,268...79,976,189
Ensembl chr10:79,966,285...79,976,669
JBrowse link
G Cdk5r1 cyclin-dependent kinase 5, regulatory subunit 1 (p35) IAGP MGI PMID:9010203 NCBI chr11:80,367,849...80,372,010
Ensembl chr11:80,367,849...80,372,010
JBrowse link
G Cnr1 cannabinoid receptor 1 (brain) IAGP MGI PMID:21406230 NCBI chr 4:33,923,171...33,948,831
Ensembl chr 4:33,924,593...33,948,831
JBrowse link
G Cntn2 contactin 2 IAGP MGI PMID:23968836 NCBI chr 1:132,437,163...132,470,989
Ensembl chr 1:132,437,165...132,470,994
JBrowse link
G Dclk1 doublecortin-like kinase 1 IAGP MGI PMID:16387638 NCBI chr 3:55,149,724...55,446,489
Ensembl chr 3:55,149,785...55,446,489
JBrowse link
G Dcx doublecortin IAGP MGI PMID:16387638 NCBI chr  X:142,638,838...142,716,392
Ensembl chr  X:142,638,838...142,716,307
JBrowse link
G Dlg4 discs large MAGUK scaffold protein 4 IAGP MGI PMID:16677619 NCBI chr11:69,908,029...69,938,107
Ensembl chr11:69,907,768...69,938,348
JBrowse link
G Dlgap3 DLG associated protein 3 IAGP MGI PMID:17713528 NCBI chr 4:127,062,098...127,130,815
Ensembl chr 4:127,062,997...127,130,815
JBrowse link
G Drd1 dopamine receptor D1 IAGP MGI PMID:9822743 NCBI chr13:54,205,202...54,209,677
Ensembl chr13:54,205,202...54,209,724
JBrowse link
G Ebf1 early B cell factor 1 IAGP MGI PMID:10556054 NCBI chr11:44,502,738...44,898,923
Ensembl chr11:44,508,144...44,898,918
JBrowse link
G Foxc1 forkhead box C1 IEA MGI NCBI chr13:31,990,629...31,994,618
Ensembl chr13:31,990,616...31,996,459
JBrowse link
G Fuz fuzzy planar cell polarity protein IAGP MGI PMID:21935430 NCBI chr 7:44,544,902...44,550,048
Ensembl chr 7:44,545,503...44,552,055
JBrowse link
G Fzd3 frizzled class receptor 3 IAGP MGI PMID:12351730 NCBI chr14:65,429,890...65,499,912
Ensembl chr14:65,429,898...65,499,912
JBrowse link
G Gba glucosidase, beta, acid IAGP MGI PMID:24388731 NCBI chr 3:89,110,223...89,116,180
Ensembl chr 3:89,110,235...89,116,273
JBrowse link
G Gpr6 G protein-coupled receptor 6 IAGP MGI PMID:17934457 NCBI chr10:40,945,973...40,948,286
Ensembl chr10:40,945,973...40,948,281
JBrowse link
G Gsx2 GS homeobox 2 IAGP MGI PMID:19208224 NCBI chr 5:75,236,262...75,238,554
Ensembl chr 5:75,236,262...75,238,554
JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:22859504 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294
JBrowse link
G Hdc histidine decarboxylase IAGP MGI PMID:24411733 NCBI chr 2:126,435,579...126,465,942
Ensembl chr 2:126,435,587...126,461,219
JBrowse link
G Hsf1 heat shock factor 1 IAGP MGI PMID:15183515 NCBI chr15:76,361,562...76,385,355
Ensembl chr15:76,361,622...76,386,113
JBrowse link
G Htt huntingtin IAGP MGI PMID:9398841 PMID:10699173 PMID:11062468 PMID:12223581 PMID:16697652 More... NCBI chr 5:34,919,084...35,069,878
Ensembl chr 5:34,919,084...35,069,878
JBrowse link
G Idua iduronidase, alpha-L IAGP MGI PMID:17920451 NCBI chr 5:108,808,197...108,833,312
Ensembl chr 5:108,808,197...108,832,423
JBrowse link
G Lhx8 LIM homeobox protein 8 IAGP MGI PMID:22315402 NCBI chr 3:154,011,925...154,036,197
Ensembl chr 3:154,011,931...154,036,296
JBrowse link
G Lig4 ligase IV, DNA, ATP-dependent IAGP MGI PMID:10716994 NCBI chr 8:10,020,020...10,027,680
Ensembl chr 8:10,019,049...10,027,686
JBrowse link
G Llgl1 LLGL1 scribble cell polarity complex component IAGP MGI PMID:15037549 NCBI chr11:60,590,501...60,605,012
Ensembl chr11:60,590,549...60,605,012
JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 IAGP MGI PMID:20064389 NCBI chr15:91,556,994...91,700,327
Ensembl chr15:91,557,378...91,700,323
JBrowse link
G Lynx1 Ly6/neurotoxin 1 IAGP MGI PMID:16950157 NCBI chr15:74,619,705...74,624,828
Ensembl chr15:74,619,701...74,624,895
JBrowse link
G Manba mannosidase, beta A, lysosomal IAGP MGI PMID:16377659 NCBI chr 3:135,191,367...135,277,165
Ensembl chr 3:135,191,372...135,277,165
JBrowse link
G Meox2 mesenchyme homeobox 2 IAGP MGI PMID:15037549 NCBI chr12:37,158,539...37,229,533
Ensembl chr12:37,158,539...37,229,533
JBrowse link
G Met met proto-oncogene IAGP MGI PMID:21195751 NCBI chr 6:17,463,351...17,573,979
Ensembl chr 6:17,463,799...17,573,979
JBrowse link
G Mfn2 mitofusin 2 IAGP MGI PMID:22859504 NCBI chr 4:147,958,043...147,989,527
Ensembl chr 4:147,958,056...147,989,161
JBrowse link
G Mycbp2 MYC binding protein 2, E3 ubiquitin protein ligase IAGP MGI PMID:23968836 NCBI chr14:103,350,847...103,584,276
Ensembl chr14:103,350,847...103,584,250
JBrowse link
G Ngf nerve growth factor IAGP MGI PMID:30612733 NCBI chr 3:102,377,235...102,428,329
Ensembl chr 3:102,377,235...102,428,329
JBrowse link
G Nsmf NMDA receptor synaptonuclear signaling and neuronal migration factor IAGP MGI PMID:26977770 NCBI chr 2:24,944,370...24,952,893
Ensembl chr 2:24,944,367...24,952,893
JBrowse link
G Park7 Parkinson disease (autosomal recessive, early onset) 7 IAGP MGI PMID:23019375 NCBI chr 4:150,981,590...150,994,378
Ensembl chr 4:150,981,590...150,998,894
JBrowse link
G Pfn2 profilin 2 IAGP MGI PMID:17541406 NCBI chr 3:57,749,316...57,755,178
Ensembl chr 3:57,749,316...57,755,500
JBrowse link
G Phf8 PHD finger protein 8 IAGP MGI PMID:28485378 NCBI chr  X:150,303,621...150,416,855
Ensembl chr  X:150,303,668...150,416,855
JBrowse link
G Plxnb2 plexin B2 IAGP MGI PMID:17554007 NCBI chr15:89,039,749...89,065,384
Ensembl chr15:89,039,752...89,064,991
JBrowse link
G Ppargc1a peroxisome proliferative activated receptor, gamma, coactivator 1 alpha IAGP MGI PMID:17018277 NCBI chr 5:51,611,591...52,273,337
Ensembl chr 5:51,611,592...51,725,068
JBrowse link
G Prickle1 prickle planar cell polarity protein 1 IAGP MGI PMID:25190059 NCBI chr15:93,396,992...93,494,147
Ensembl chr15:93,396,995...93,493,772
JBrowse link
G Prkdc protein kinase, DNA activated, catalytic polypeptide IAGP MGI PMID:17920451 NCBI chr16:15,455,698...15,660,103
Ensembl chr16:15,455,730...15,660,099
JBrowse link
G Pten phosphatase and tensin homolog IAGP MGI PMID:19750226 NCBI chr19:32,734,977...32,803,560
Ensembl chr19:32,734,897...32,803,560
JBrowse link
G Qki quaking, KH domain containing RNA binding IEA MGI NCBI chr17:10,425,400...10,538,706
Ensembl chr17:10,421,530...10,538,783
JBrowse link
G Rxrg retinoid X receptor gamma IAGP MGI PMID:10336693 NCBI chr 1:167,425,931...167,467,192
Ensembl chr 1:167,425,953...167,467,192
JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 IAGP MGI PMID:21423165 NCBI chr15:89,376,929...89,444,464
Ensembl chr15:89,383,826...89,444,464
JBrowse link
G Slc6a3 solute carrier family 6 (neurotransmitter transporter, dopamine), member 3 IAGP MGI PMID:19750226 PMID:22131425 PMID:22859504 NCBI chr13:73,684,270...73,726,791
Ensembl chr13:73,684,866...73,726,791
JBrowse link
G Slitrk5 SLIT and NTRK-like family, member 5 IAGP MGI PMID:20418887 NCBI chr14:111,912,547...111,920,576
Ensembl chr14:111,912,529...111,920,573
JBrowse link
G Snca synuclein, alpha IAGP MGI PMID:15465911 NCBI chr 6:60,708,557...60,806,839
Ensembl chr 6:60,708,559...60,806,839
JBrowse link
G Sncb synuclein, beta IAGP MGI PMID:15465911 NCBI chr13:54,906,673...54,914,435
Ensembl chr13:54,906,673...54,914,408
JBrowse link
G Sox1 SRY (sex determining region Y)-box 1 IAGP MGI PMID:15882093 NCBI chr 8:12,445,519...12,449,555
Ensembl chr 8:12,445,295...12,450,126
JBrowse link
G Sp9 trans-acting transcription factor 9 IAGP MGI PMID:27452460 NCBI chr 2:73,094,805...73,106,115
Ensembl chr 2:73,102,269...73,115,050
JBrowse link
G Spp1 secreted phosphoprotein 1 IAGP MGI PMID:17188882 NCBI chr 5:104,582,977...104,588,919
Ensembl chr 5:104,582,984...104,588,916
JBrowse link
G Tgm2 transglutaminase 2, C polypeptide IAGP MGI PMID:15606898 NCBI chr 2:157,958,325...157,988,312
Ensembl chr 2:157,958,322...157,988,356
JBrowse link
G Tmem163 transmembrane protein 163 IAGP MGI PMID:22315402 NCBI chr 1:127,418,079...127,605,758
Ensembl chr 1:127,414,283...127,607,285
JBrowse link
G Vti1a vesicle transport through interaction with t-SNAREs 1A IAGP MGI PMID:21262811 NCBI chr19:55,304,489...55,615,893
Ensembl chr19:55,304,727...55,615,741
JBrowse link
G Vti1b vesicle transport through interaction with t-SNAREs 1B IAGP MGI PMID:21262811 NCBI chr12:79,202,791...79,219,428
Ensembl chr12:79,202,791...79,219,441
JBrowse link
G Xrcc6 X-ray repair complementing defective repair in Chinese hamster cells 6 IAGP MGI PMID:10716994 NCBI chr15:81,868,805...81,924,286
Ensembl chr15:81,872,036...81,924,286
JBrowse link
G Zdhhc17 zinc finger, DHHC domain containing 17 IAGP MGI PMID:21775500 NCBI chr10:110,777,640...110,848,587
Ensembl chr10:110,777,641...110,846,001
JBrowse link
G Zic5 zinc finger protein of the cerebellum 5 IAGP MGI PMID:15736266 NCBI chr14:122,696,572...122,703,127
Ensembl chr14:122,694,207...122,703,089
JBrowse link
abnormal substantia nigra morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adh7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide IAGP MGI PMID:21075145 NCBI chr 3:137,903,828...137,937,803
Ensembl chr 3:137,923,521...137,939,143
JBrowse link
G Bdnf brain derived neurotrophic factor IAGP MGI PMID:15987955 NCBI chr 2:109,505,045...109,557,388
Ensembl chr 2:109,505,045...109,557,352
JBrowse link
G En1 engrailed 1 IAGP MGI PMID:19968985 NCBI chr 1:120,530,216...120,535,720
Ensembl chr 1:120,530,147...120,535,721
JBrowse link
G Esr2 estrogen receptor 2 (beta) IAGP MGI PMID:11226319 NCBI chr12:76,167,193...76,224,033
Ensembl chr12:76,167,193...76,224,033
JBrowse link
G Fgf8 fibroblast growth factor 8 IAGP MGI PMID:19968985 NCBI chr19:45,724,930...45,731,506
Ensembl chr19:45,725,237...45,731,354
JBrowse link
G Gdnf glial cell line derived neurotrophic factor IAGP MGI PMID:18536709 NCBI chr15:7,839,529...7,867,061
Ensembl chr15:7,840,327...7,867,056
JBrowse link
G Gpr37 G protein-coupled receptor 37 IAGP MGI PMID:15218106 NCBI chr 6:25,668,522...25,689,979
Ensembl chr 6:25,665,877...25,690,728
JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:15987955 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443
JBrowse link
G Hdc histidine decarboxylase IAGP MGI PMID:24411733 NCBI chr 2:126,435,579...126,465,942
Ensembl chr 2:126,435,587...126,461,219
JBrowse link
G Nr4a2 nuclear receptor subfamily 4, group A, member 2 IAGP MGI PMID:9520484 NCBI chr 2:56,996,845...57,014,018
Ensembl chr 2:56,996,842...57,014,015
JBrowse link
G Ppargc1a peroxisome proliferative activated receptor, gamma, coactivator 1 alpha IAGP MGI PMID:32439544 NCBI chr 5:51,611,591...52,273,337
Ensembl chr 5:51,611,592...51,725,068
JBrowse link
G Slc6a3 solute carrier family 6 (neurotransmitter transporter, dopamine), member 3 IAGP MGI PMID:22131425 NCBI chr13:73,684,270...73,726,791
Ensembl chr13:73,684,866...73,726,791
JBrowse link
G Spp1 secreted phosphoprotein 1 IAGP MGI PMID:17188882 NCBI chr 5:104,582,977...104,588,919
Ensembl chr 5:104,582,984...104,588,916
JBrowse link
abnormal substantia nigra pars compacta morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg7 autophagy related 7 IAGP MGI PMID:23152632 NCBI chr 6:114,620,075...114,837,565
Ensembl chr 6:114,620,058...114,837,575
JBrowse link
G Bdnf brain derived neurotrophic factor IAGP MGI PMID:15987955 NCBI chr 2:109,505,045...109,557,388
Ensembl chr 2:109,505,045...109,557,352
JBrowse link
G Cntnap4 contactin associated protein-like 4 IAGP MGI PMID:32194851 NCBI chr 8:113,296,523...113,609,339
Ensembl chr 8:113,296,675...113,609,349
JBrowse link
G En1 engrailed 1 IAGP MGI PMID:23152632 NCBI chr 1:120,530,216...120,535,720
Ensembl chr 1:120,530,147...120,535,721
JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:15987955 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443
JBrowse link
G Hyou1 hypoxia up-regulated 1 IAGP MGI PMID:17116640 NCBI chr 9:44,290,787...44,303,666
Ensembl chr 9:44,290,787...44,303,666
JBrowse link
G Il6 interleukin 6 IAGP MGI PMID:12358740 NCBI chr 5:30,218,112...30,224,973
Ensembl chr 5:30,218,112...30,224,979
JBrowse link
G Kcnj6 potassium inwardly-rectifying channel, subfamily J, member 6 IAGP MGI PMID:7062116 PMID:9023358 NCBI chr16:94,545,839...94,798,719
Ensembl chr16:94,549,495...94,798,560
JBrowse link
G Mfn2 mitofusin 2 IAGP MGI PMID:22914740 NCBI chr 4:147,958,043...147,989,527
Ensembl chr 4:147,958,056...147,989,161
JBrowse link
G Park7 Parkinson disease (autosomal recessive, early onset) 7 IAGP MGI PMID:23019375 NCBI chr 4:150,981,590...150,994,378
Ensembl chr 4:150,981,590...150,998,894
JBrowse link
G Pitx3 paired-like homeodomain transcription factor 3 IAGP MGI PMID:12829322 NCBI chr19:46,123,720...46,136,764
Ensembl chr19:46,124,124...46,136,765
JBrowse link
G Pla2g6 phospholipase A2, group VI IAGP MGI PMID:30088174 NCBI chr15:79,170,428...79,212,915
Ensembl chr15:79,170,428...79,212,590
JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase IAGP MGI PMID:17116640 NCBI chr17:11,059,227...12,282,257
Ensembl chr17:11,059,271...12,282,248
JBrowse link
G Pten phosphatase and tensin homolog IAGP MGI PMID:19750226 NCBI chr19:32,734,977...32,803,560
Ensembl chr19:32,734,897...32,803,560
JBrowse link
G Slc6a3 solute carrier family 6 (neurotransmitter transporter, dopamine), member 3 IAGP MGI PMID:19750226 PMID:22914740 PMID:23152632 NCBI chr13:73,684,270...73,726,791
Ensembl chr13:73,684,866...73,726,791
JBrowse link
abnormal substantia nigra pars reticulata morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nr1h2 nuclear receptor subfamily 1, group H, member 2 IAGP MGI PMID:12368482 NCBI chr 7:44,199,040...44,204,928
Ensembl chr 7:44,199,040...44,203,375
JBrowse link
G Nr1h3 nuclear receptor subfamily 1, group H, member 3 IAGP MGI PMID:12368482 NCBI chr 2:91,014,406...91,033,189
Ensembl chr 2:91,014,406...91,033,179
JBrowse link
G Pten phosphatase and tensin homolog IAGP MGI PMID:19750226 NCBI chr19:32,734,977...32,803,560
Ensembl chr19:32,734,897...32,803,560
JBrowse link
G Slc6a3 solute carrier family 6 (neurotransmitter transporter, dopamine), member 3 IAGP MGI PMID:19750226 NCBI chr13:73,684,270...73,726,791
Ensembl chr13:73,684,866...73,726,791
JBrowse link
abnormal subthalamic nucleus morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Htt huntingtin IAGP MGI PMID:7774020 NCBI chr 5:34,919,084...35,069,878
Ensembl chr 5:34,919,084...35,069,878
JBrowse link
abnormal ventral striatum morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arx aristaless related homeobox IAGP MGI PMID:19605412 NCBI chr  X:92,330,113...92,341,963
Ensembl chr  X:92,330,051...92,341,963
JBrowse link
G Cntn2 contactin 2 IAGP MGI PMID:23968836 NCBI chr 1:132,437,163...132,470,989
Ensembl chr 1:132,437,165...132,470,994
JBrowse link
G Ebf1 early B cell factor 1 IAGP MGI PMID:10556054 NCBI chr11:44,502,738...44,898,923
Ensembl chr11:44,508,144...44,898,918
JBrowse link
G Gdnf glial cell line derived neurotrophic factor IAGP MGI PMID:18536709 NCBI chr15:7,839,529...7,867,061
Ensembl chr15:7,840,327...7,867,056
JBrowse link
G Gsx1 GS homeobox 1 IAGP MGI PMID:11731457 NCBI chr 5:147,125,506...147,127,757
Ensembl chr 5:147,125,506...147,127,757
JBrowse link
G Gsx2 GS homeobox 2 IAGP MGI PMID:11731457 NCBI chr 5:75,236,262...75,238,554
Ensembl chr 5:75,236,262...75,238,554
JBrowse link
G Htt huntingtin IAGP MGI PMID:17715336 NCBI chr 5:34,919,084...35,069,878
Ensembl chr 5:34,919,084...35,069,878
JBrowse link
G Mycbp2 MYC binding protein 2, E3 ubiquitin protein ligase IAGP MGI PMID:23968836 NCBI chr14:103,350,847...103,584,276
Ensembl chr14:103,350,847...103,584,250
JBrowse link
G Reln reelin IAGP MGI PMID:11982630 NCBI chr 5:22,089,452...22,549,703
Ensembl chr 5:22,089,452...22,549,700
JBrowse link
G Sox1 SRY (sex determining region Y)-box 1 IAGP MGI PMID:15882093 NCBI chr 8:12,445,519...12,449,555
Ensembl chr 8:12,445,295...12,450,126
JBrowse link
decreased dorsal striatum total cell area term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atrip ATR interacting protein IAGP MGI PMID:33110058 NCBI chr 9:108,888,815...108,903,192
Ensembl chr 9:108,887,001...108,903,192
JBrowse link
decreased striatum size term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl6 ADP-ribosylation factor-like 6 IAGP MGI PMID:22139371 NCBI chr16:59,433,312...59,459,772
Ensembl chr16:59,433,312...59,459,754
JBrowse link
G Bax BCL2-associated X protein IAGP MGI PMID:27452460 NCBI chr 7:45,111,119...45,116,344
Ensembl chr 7:45,111,121...45,116,322
JBrowse link
G Bbs1 Bardet-Biedl syndrome 1 (human) IAGP MGI PMID:18032602 NCBI chr19:4,936,906...4,956,681
Ensembl chr19:4,936,906...4,956,656
JBrowse link
G Bbs7 Bardet-Biedl syndrome 7 (human) IAGP MGI PMID:23572516 NCBI chr 3:36,627,291...36,667,639
Ensembl chr 3:36,627,291...36,667,626
JBrowse link
G Bdnf brain derived neurotrophic factor IAGP MGI PMID:15115821 PMID:20130183 NCBI chr 2:109,505,045...109,557,388
Ensembl chr 2:109,505,045...109,557,352
JBrowse link
G Cdk5r1 cyclin-dependent kinase 5, regulatory subunit 1 (p35) IAGP MGI PMID:9010203 NCBI chr11:80,367,849...80,372,010
Ensembl chr11:80,367,849...80,372,010
JBrowse link
G Chmp1a charged multivesicular body protein 1A IAGP MGI PMID:30044992 NCBI chr 8:123,931,000...123,939,527
Ensembl chr 8:123,931,003...123,939,502
JBrowse link
G Drd1 dopamine receptor D1 IAGP MGI PMID:7954836 PMID:17360497 NCBI chr13:54,205,202...54,209,677
Ensembl chr13:54,205,202...54,209,724
JBrowse link
G Dscam DS cell adhesion molecule IAGP MGI PMID:21904980 NCBI chr16:96,388,652...96,971,935
Ensembl chr16:96,392,040...96,971,952
JBrowse link
G Ebf1 early B cell factor 1 IAGP MGI PMID:10556054 NCBI chr11:44,502,738...44,898,923
Ensembl chr11:44,508,144...44,898,918
JBrowse link
G Emx1 empty spiracles homeobox 1 IAGP MGI PMID:15115821 NCBI chr 6:85,164,913...85,181,445
Ensembl chr 6:85,164,420...85,181,444
JBrowse link
G Foxg1 forkhead box G1 IAGP MGI PMID:17640820 NCBI chr12:49,429,666...49,433,650
Ensembl chr12:49,429,443...49,433,644
JBrowse link
G Fzd3 frizzled class receptor 3 IAGP MGI PMID:12351730 NCBI chr14:65,429,890...65,499,912
Ensembl chr14:65,429,898...65,499,912
JBrowse link
G Gsx1 GS homeobox 1 IAGP MGI PMID:11731457 NCBI chr 5:147,125,506...147,127,757
Ensembl chr 5:147,125,506...147,127,757
JBrowse link
G Gsx2 GS homeobox 2 IAGP MGI PMID:11731457 PMID:19709628 NCBI chr 5:75,236,262...75,238,554
Ensembl chr 5:75,236,262...75,238,554
JBrowse link
G Mapt microtubule-associated protein tau IAGP MGI PMID:20130183 NCBI chr11:104,120,235...104,222,916
Ensembl chr11:104,122,216...104,222,916
JBrowse link
G Mkks McKusick-Kaufman syndrome IAGP MGI PMID:18032602 NCBI chr 2:136,715,700...136,733,422
Ensembl chr 2:136,715,700...136,733,309
JBrowse link
G Mrtfa myocardin related transcription factor A IAGP MGI PMID:20534669 NCBI chr15:80,896,482...81,074,937
Ensembl chr15:80,896,482...81,074,958
JBrowse link
G Mrtfb myocardin related transcription factor B IAGP MGI PMID:20534669 NCBI chr16:13,073,913...13,235,393
Ensembl chr16:13,074,345...13,235,393
JBrowse link
G Ppm1l protein phosphatase 1 (formerly 2C)-like IAGP MGI PMID:27680501 NCBI chr 3:69,224,251...69,468,131
Ensembl chr 3:69,224,194...69,468,135
JBrowse link
G Slc25a12 solute carrier family 25 (mitochondrial carrier, Aralar), member 12 IAGP MGI PMID:23216354 NCBI chr 2:71,104,614...71,198,125
Ensembl chr 2:71,101,407...71,198,093
JBrowse link
G Slc9a6 solute carrier family 9 (sodium/hydrogen exchanger), member 6 IAGP MGI PMID:29349289 NCBI chr  X:55,654,921...55,709,590
Ensembl chr  X:55,655,117...55,709,590
JBrowse link
G Sp9 trans-acting transcription factor 9 IAGP MGI PMID:27452460 NCBI chr 2:73,094,805...73,106,115
Ensembl chr 2:73,102,269...73,115,050
JBrowse link
G St8sia2 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 IAGP MGI PMID:17682066 NCBI chr 7:73,588,867...73,663,475
Ensembl chr 7:73,588,867...73,663,438
JBrowse link
G St8sia4 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 IAGP MGI PMID:17682066 NCBI chr 1:95,515,407...95,595,473
Ensembl chr 1:95,515,407...95,595,296
JBrowse link
G Svbp small vasohibin binding protein IAGP MGI PMID:31363758 NCBI chr 4:119,052,507...119,058,495
Ensembl chr 4:119,052,503...119,058,495
JBrowse link
G Vps13a vacuolar protein sorting 13A IAGP MGI PMID:15686477 NCBI chr19:16,592,730...16,758,433
Ensembl chr19:16,592,730...16,758,297
JBrowse link
G Wasf1 WASP family, member 1 IAGP MGI PMID:12716942 NCBI chr10:40,759,476...40,814,565
Ensembl chr10:40,759,471...40,814,566
JBrowse link
G Zdhhc13 zinc finger, DHHC domain containing 13 IAGP MGI PMID:23077216 NCBI chr 7:48,438,751...48,477,188
Ensembl chr 7:48,438,751...48,477,188
JBrowse link
G Zdhhc17 zinc finger, DHHC domain containing 17 IAGP MGI PMID:21775500 NCBI chr10:110,777,640...110,848,587
Ensembl chr10:110,777,641...110,846,001
JBrowse link
G Zswim6 zinc finger SWIM-type containing 6 IAGP MGI PMID:28433741 NCBI chr13:107,861,152...108,026,598
Ensembl chr13:107,861,152...108,026,598
JBrowse link
decreased substantia nigra size term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G 7630403G23Rik RIKEN cDNA 7630403G23 gene IAGP MGI PMID:16033881 NCBI chr 9:33,953,667...33,970,315
Ensembl chr 9:33,953,665...33,970,315
JBrowse link
G Bcl2l1 BCL2-like 1 IAGP MGI PMID:16033881 NCBI chr 2:152,600,652...152,675,723
Ensembl chr 2:152,622,588...152,673,648
JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 IAGP MGI PMID:17159989 NCBI chr 6:38,664,447...38,853,236
Ensembl chr 6:38,671,325...38,853,099
JBrowse link
G Otx1 orthodenticle homeobox 1 IAGP MGI PMID:9077465 NCBI chr11:21,944,764...21,954,044
Ensembl chr11:21,944,764...21,952,897
JBrowse link
G Otx2 orthodenticle homeobox 2 IAGP MGI PMID:9077465 NCBI chr14:48,894,238...48,905,101
Ensembl chr14:48,895,134...48,911,276
JBrowse link
G Pitx3 paired-like homeodomain transcription factor 3 IAGP MGI PMID:12655058 NCBI chr19:46,123,720...46,136,764
Ensembl chr19:46,124,124...46,136,765
JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase IAGP MGI PMID:17623040 NCBI chr17:11,059,227...12,282,257
Ensembl chr17:11,059,271...12,282,248
JBrowse link
G Sod2 superoxide dismutase 2, mitochondrial IAGP MGI PMID:10762155 NCBI chr17:13,226,726...13,237,006
Ensembl chr17:13,225,733...13,258,950
JBrowse link
G Trappc9 trafficking protein particle complex 9 IAGP MGI PMID:32877400 NCBI chr15:72,461,469...72,933,086
Ensembl chr15:72,461,469...72,933,053
JBrowse link
increased striatum size term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casp6 caspase 6 IAGP MGI PMID:22262731 NCBI chr 3:129,695,064...129,707,761
Ensembl chr 3:129,695,074...129,707,752
JBrowse link
G Ctnnb1 catenin (cadherin associated protein), beta 1 IAGP MGI PMID:24614104 NCBI chr 9:120,762,466...120,789,573
Ensembl chr 9:120,758,282...120,789,573
JBrowse link
G Trappc9 trafficking protein particle complex 9 IAGP MGI PMID:33208359 NCBI chr15:72,461,469...72,933,086
Ensembl chr15:72,461,469...72,933,053
JBrowse link
loss of basal ganglia neurons term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Htra2 HtrA serine peptidase 2 IAGP MGI PMID:15509788 NCBI chr 6:83,028,247...83,031,552
Ensembl chr 6:83,028,247...83,032,254
JBrowse link
G Vps13a vacuolar protein sorting 13A IAGP MGI PMID:15686477 NCBI chr19:16,592,730...16,758,433
Ensembl chr19:16,592,730...16,758,297
JBrowse link
striatum atrophy term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bicd2 BICD cargo adaptor 2 IAGP MGI PMID:24614806 NCBI chr13:49,495,025...49,540,502
Ensembl chr13:49,495,061...49,540,502
JBrowse link
G Drd1 dopamine receptor D1 IAGP MGI PMID:17360497 NCBI chr13:54,205,202...54,209,677
Ensembl chr13:54,205,202...54,209,724
JBrowse link

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  mammalian phenotype 16210
    nervous system phenotype 4437
      abnormal nervous system morphology 3521
        abnormal brain morphology 2176
          abnormal forebrain morphology 1309
            abnormal basal ganglion morphology 157
              abnormal globus pallidus morphology 9
              abnormal striatum morphology + 111
              abnormal substantia nigra morphology + 34
              abnormal subthalamic nucleus morphology 1
              loss of basal ganglia neurons 2
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