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ONTOLOGY REPORT - ANNOTATIONS


Term:abnormal brainstem morphology
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Accession:MP:0005277 term browser browse the term
Definition:any structural anomaly of the stalk-like part of the brain that comprises the midbrain (aka mesencephalon), the pons (aka pons Varolii), and the medulla oblongata, and connects the cerebral hemispheres with the cervical spinal cord
Synonyms:exact_synonym: abnormal brain stem morphology;   abnormal truncus encephali morphology;   brainstem dysplasia


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abnormal brainstem morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arhgef2 rho/rac guanine nucleotide exchange factor (GEF) 2 JBrowse link 3 88,593,105 88,649,532 RGD:5509061
G Asic2 acid-sensing (proton-gated) ion channel 2 JBrowse link 11 80,880,163 81,968,396 RGD:5509061
G Asic3 acid-sensing (proton-gated) ion channel 3 JBrowse link 5 24,413,451 24,417,840 RGD:5509061
G Aspa aspartoacylase JBrowse link 11 73,304,987 73,326,876 RGD:5509061
G Atp1b2 ATPase, Na+/K+ transporting, beta 2 polypeptide JBrowse link 11 69,599,728 69,605,978 RGD:5509061
G B4galnt1 beta-1,4-N-acetyl-galactosaminyl transferase 1 JBrowse link 10 127,165,156 127,172,340 RGD:5509061
G Cacna1a calcium channel, voltage-dependent, P/Q type, alpha 1A subunit JBrowse link 8 84,338,631 84,640,251 RGD:5509061
G Casp3 caspase 3 JBrowse link 8 46,617,291 46,639,698 RGD:5509061
G Clcn2 chloride channel, voltage-sensitive 2 JBrowse link 16 20,702,435 20,717,746 RGD:5509061
G Cln3 ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease) JBrowse link 7 126,571,207 126,585,817 RGD:5509061
G Dclk1 doublecortin-like kinase 1 JBrowse link 3 55,242,303 55,539,068 RGD:5509061
G Dcx doublecortin JBrowse link X 143,855,842 143,933,396 RGD:5509061
G Dnm1l dynamin 1-like JBrowse link 16 16,312,228 16,359,038 RGD:5509061
G Dst dystonin JBrowse link 1 33,907,888 34,308,662 RGD:5509061
G Eif4h eukaryotic translation initiation factor 4H JBrowse link 5 134,619,872 134,639,409 RGD:5509061
G Fkrp fukutin related protein JBrowse link 7 16,809,267 16,816,732 RGD:5509061
G Glb1 galactosidase, beta 1 JBrowse link 9 114,401,078 114,474,379 RGD:5509061
G Grin1 glutamate receptor, ionotropic, NMDA1 (zeta 1) JBrowse link 2 25,291,177 25,319,253 RGD:5509061
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano JBrowse link 6 113,067,428 113,077,244 RGD:5509061
G Hoxb1 homeobox B1 JBrowse link 11 96,365,746 96,368,254 RGD:5509061
G Hoxb2 homeobox B2 JBrowse link 11 96,351,632 96,354,020 RGD:5509061
G Hsd11b1 hydroxysteroid 11-beta dehydrogenase 1 JBrowse link 1 193,221,640 193,264,049 RGD:5509061
G Hydin HYDIN, axonemal central pair apparatus protein JBrowse link 8 110,266,968 110,610,253 RGD:5509061
G Ids iduronate 2-sulfatase JBrowse link X 70,343,069 70,385,834 RGD:5509061
G Idua iduronidase, alpha-L JBrowse link 5 108,660,331 108,685,446 RGD:5509061
G Igf1r insulin-like growth factor I receptor JBrowse link 7 67,952,257 68,233,668 RGD:5509061
G Kif1b kinesin family member 1B JBrowse link 4 149,176,319 149,307,773 RGD:5509061
G Lbx1 ladybird homeobox 1 JBrowse link 19 45,232,684 45,236,841 RGD:5509061
G Lig4 ligase IV, DNA, ATP-dependent JBrowse link 8 9,970,020 9,977,696 RGD:5509061
G Mafb v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian) JBrowse link 2 160,363,677 160,367,065 RGD:5509061
G Man2b1 mannosidase 2, alpha B1 JBrowse link 8 85,082,730 85,098,739 RGD:5509061
G Mapt microtubule-associated protein tau JBrowse link 11 104,229,409 104,332,090 RGD:5509061
G Pikfyve phosphoinositide kinase, FYVE type zinc finger containing JBrowse link 1 65,186,640 65,278,696 RGD:5509061
G Pla2g6 phospholipase A2, group VI JBrowse link 15 79,286,228 79,328,385 RGD:5509061
G Ppargc1a peroxisome proliferative activated receptor, gamma, coactivator 1 alpha JBrowse link 5 51,454,249 52,115,853 RGD:5509061
G Prkdc protein kinase, DNA activated, catalytic polypeptide JBrowse link 16 15,637,444 15,842,239 RGD:5509061
G Psap prosaposin JBrowse link 10 60,277,628 60,302,600 RGD:5509061
G Pten phosphatase and tensin homolog JBrowse link 19 32,757,577 32,826,160 RGD:5509061
G Rhot1 ras homolog family member T1 JBrowse link 11 80,208,610 80,267,907 RGD:5509061
G Slc17a5 solute carrier family 17 (anion/sugar transporter), member 5 JBrowse link 9 78,536,487 78,588,045 RGD:5509061
G Sod2 superoxide dismutase 2, mitochondrial JBrowse link 17 13,007,839 13,018,119 RGD:5509061
G Usp14 ubiquitin specific peptidase 14 JBrowse link 18 9,993,615 10,030,149 RGD:5509061
abnormal cerebral aqueduct morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdc42 cell division cycle 42 JBrowse link 4 137,319,696 137,357,759 RGD:5509061
G Ddb1 damage specific DNA binding protein 1 JBrowse link 19 10,605,568 10,629,828 RGD:5509061
G Dlg5 discs large MAGUK scaffold protein 5 JBrowse link 14 24,133,953 24,245,920 RGD:5509061
G Dscam DS cell adhesion molecule JBrowse link 16 96,587,452 97,171,113 RGD:5509061
G En1 engrailed 1 JBrowse link 1 120,602,487 120,607,991 RGD:5509061
G Erbb3 erb-b2 receptor tyrosine kinase 3 JBrowse link 10 128,567,523 128,589,635 RGD:5509061
G Foxc1 forkhead box C1 JBrowse link 13 31,806,646 31,810,635 RGD:5509061
G Gli3 GLI-Kruppel family member GLI3 JBrowse link 13 15,463,723 15,730,026 RGD:5509061
G Htt huntingtin JBrowse link 5 34,761,721 34,912,534 RGD:5509061
G Hydin HYDIN, axonemal central pair apparatus protein JBrowse link 8 110,266,968 110,610,253 RGD:5509061
G L1cam L1 cell adhesion molecule JBrowse link X 73,853,780 73,880,838 RGD:5509061
G Mks1 Meckel syndrome, type 1 JBrowse link 11 87,853,182 87,863,803 RGD:5509061
G Myh10 myosin, heavy polypeptide 10, non-muscle JBrowse link 11 68,691,915 68,816,626 RGD:5509061
G Myo9a myosin IXa JBrowse link 9 59,750,848 59,928,866 RGD:5509061
G Napa N-ethylmaleimide sensitive fusion protein attachment protein alpha JBrowse link 7 16,098,202 16,117,982 RGD:5509061
G Nek1 NIMA (never in mitosis gene a)-related expressed kinase 1 JBrowse link 8 60,993,157 61,131,349 RGD:5509061
G Npas3 neuronal PAS domain protein 3 JBrowse link 12 53,248,026 54,072,173 RGD:5509061
G Nr1h2 nuclear receptor subfamily 1, group H, member 2 JBrowse link 7 44,549,616 44,553,968 RGD:5509061
G Nr1h3 nuclear receptor subfamily 1, group H, member 3 JBrowse link 2 91,184,061 91,202,829 RGD:5509061
G Otx1 orthodenticle homeobox 1 JBrowse link 11 21,994,764 22,001,651 RGD:5509061
G Otx2 orthodenticle homeobox 2 JBrowse link 14 48,656,781 48,667,644 RGD:5509061
G Rhob ras homolog family member B JBrowse link 12 8,497,661 8,500,009 RGD:5509061
G Rnd3 Rho family GTPase 3 JBrowse link 2 51,130,439 51,149,111 RGD:5509061
G Smo smoothened, frizzled class receptor JBrowse link 6 29,735,497 29,761,366 RGD:5509061
G Uchl5 ubiquitin carboxyl-terminal esterase L5 JBrowse link 1 143,777,234 143,807,466 RGD:5509061
G Wasl Wiskott-Aldrich syndrome-like (human) JBrowse link 6 24,613,810 24,664,995 RGD:5509061
abnormal cochlear VIII nucleus morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Agtpbp1 ATP/GTP binding protein 1 JBrowse link 13 59,449,534 59,557,370 RGD:5509061
G Atoh1 atonal bHLH transcription factor 1 JBrowse link 6 64,729,125 64,731,245 RGD:5509061
G Atp2b2 ATPase, Ca++ transporting, plasma membrane 2 JBrowse link 6 113,743,831 114,042,613 RGD:5509061
G Grid2 glutamate receptor, ionotropic, delta 2 JBrowse link 6 63,256,006 64,704,321 RGD:5509061
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano JBrowse link 6 113,067,428 113,077,244 RGD:5509061
G H2az2 H2A.Z histone variant 2 JBrowse link 11 6,427,226 6,444,511 RGD:5509061
G Hoxa2 homeobox A2 JBrowse link 6 52,162,417 52,164,831 RGD:5509061
G Hoxb1 homeobox B1 JBrowse link 11 96,365,746 96,368,254 RGD:5509061
G Hoxb2 homeobox B2 JBrowse link 11 96,351,632 96,354,020 RGD:5509061
G Il17rd interleukin 17 receptor D JBrowse link 14 27,038,964 27,107,286 RGD:5509061
G Kcnj6 potassium inwardly-rectifying channel, subfamily J, member 6 JBrowse link 16 94,744,980 94,997,696 RGD:5509061
G Rora RAR-related orphan receptor alpha JBrowse link 9 68,653,404 69,388,246 RGD:5509061
abnormal corpora quadrigemina morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G En1 engrailed 1 JBrowse link 1 120,602,487 120,607,991 RGD:5509061
G Ireb2 iron responsive element binding protein 2 JBrowse link 9 54,862,658 54,912,534 RGD:5509061
G Pax2 paired box 2 JBrowse link 19 44,746,601 44,838,269 RGD:5509061
G Unc5c unc-5 netrin receptor C JBrowse link 3 141,465,564 141,834,924 RGD:5509061
abnormal facial motor nucleus morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bax BCL2-associated X protein JBrowse link 7 45,461,695 45,466,903 RGD:5509061
G Bcl2 B cell leukemia/lymphoma 2 JBrowse link 1 106,538,176 106,714,290 RGD:5509061
G Casp2 caspase 2 JBrowse link 6 42,264,902 42,282,508 RGD:5509061
G Clcf1 cardiotrophin-like cytokine factor 1 JBrowse link 19 4,214,238 4,223,505 RGD:5509061
G Hoxa2 homeobox A2 JBrowse link 6 52,162,417 52,164,831 RGD:5509061
G Hoxb1 homeobox B1 JBrowse link 11 96,365,746 96,368,254 RGD:5509061
G Nkx6-2 NK6 homeobox 2 JBrowse link 7 139,579,376 139,582,797 RGD:5509061
G Ret ret proto-oncogene JBrowse link 6 118,151,748 118,197,744 RGD:5509061
G Vegfa vascular endothelial growth factor A JBrowse link 17 46,016,993 46,032,377 RGD:5509061
abnormal hypoglossal nucleus morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nkx6-2 NK6 homeobox 2 JBrowse link 7 139,579,376 139,582,797 RGD:5509061
G Ret ret proto-oncogene JBrowse link 6 118,151,748 118,197,744 RGD:5509061
abnormal inferior colliculus morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg5 autophagy related 5 JBrowse link 10 44,268,322 44,364,299 RGD:5509061
G En1 engrailed 1 JBrowse link 1 120,602,487 120,607,991 RGD:5509061
G Fkrp fukutin related protein JBrowse link 7 16,809,267 16,816,732 RGD:5509061
G Gbx2 gastrulation brain homeobox 2 JBrowse link 1 89,927,962 89,931,176 RGD:5509061
G Gli3 GLI-Kruppel family member GLI3 JBrowse link 13 15,463,723 15,730,026 RGD:5509061
G Mir9-2 microRNA 9-2 JBrowse link 13 83,738,814 83,738,885 RGD:5509061
G Mir9-3 microRNA 9-3 JBrowse link 7 79,505,264 79,505,353 RGD:5509061
G Otx1 orthodenticle homeobox 1 JBrowse link 11 21,994,764 22,001,651 RGD:5509061
G Otx2 orthodenticle homeobox 2 JBrowse link 14 48,656,781 48,667,644 RGD:5509061
G Pomgnt1 protein O-linked mannose beta 1,2-N-acetylglucosaminyltransferase JBrowse link 4 116,150,498 116,159,844 RGD:5509061
G Tal2 T cell acute lymphocytic leukemia 2 JBrowse link 4 53,779,701 53,788,712 RGD:5509061
G Unc5c unc-5 netrin receptor C JBrowse link 3 141,465,564 141,834,924 RGD:5509061
G Wnt1 wingless-type MMTV integration site family, member 1 JBrowse link 15 98,789,857 98,793,830 RGD:5509061
abnormal inferior olivary complex morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kif2a kinesin family member 2A JBrowse link 13 106,960,585 107,022,476 RGD:5509061
G Map1b microtubule-associated protein 1B JBrowse link 13 99,421,464 99,516,602 RGD:5509061
G Map2 microtubule-associated protein 2 JBrowse link 1 66,175,202 66,442,583 RGD:5509061
G Olig3 oligodendrocyte transcription factor 3 JBrowse link 10 19,356,539 19,358,604 RGD:5509061
G Pou4f1 POU domain, class 4, transcription factor 1 JBrowse link 14 104,461,675 104,468,118 RGD:5509061
G Rora RAR-related orphan receptor alpha JBrowse link 9 68,653,404 69,388,246 RGD:5509061
abnormal locus ceruleus morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G 7630403G23Rik RIKEN cDNA 7630403G23 gene JBrowse link 9 34,042,371 34,059,019 RGD:5509061
G Ascl1 achaete-scute family bHLH transcription factor 1 JBrowse link 10 87,490,819 87,493,660 RGD:5509061
G En1 engrailed 1 JBrowse link 1 120,602,487 120,607,991 RGD:5509061
G Fgfr1 fibroblast growth factor receptor 1 JBrowse link 8 25,518,759 25,575,718 RGD:5509061
G Gbx2 gastrulation brain homeobox 2 JBrowse link 1 89,927,962 89,931,176 RGD:5509061
G Gdnf glial cell line derived neurotrophic factor JBrowse link 15 7,810,048 7,837,580 RGD:5509061
G Hes1 hes family bHLH transcription factor 1 JBrowse link 16 30,065,357 30,067,796 RGD:5509061
G Hes3 hes family bHLH transcription factor 3 JBrowse link 4 152,285,250 152,291,911 RGD:5509061
G Park7 Parkinson disease (autosomal recessive, early onset) 7 JBrowse link 4 150,897,133 150,909,921 RGD:5509061
G Phox2a paired-like homeobox 2a JBrowse link 7 101,818,313 101,822,726 RGD:5509061
G Phox2b paired-like homeobox 2b JBrowse link 5 67,094,397 67,099,126 RGD:5509061
G Prkn parkin RBR E3 ubiquitin protein ligase JBrowse link 17 10,840,359 12,063,370 RGD:5509061
G Rnf180 ring finger protein 180 JBrowse link 13 105,130,567 105,294,818 RGD:5509061
abnormal medulla oblongata morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atrn attractin JBrowse link 2 130,906,430 131,030,333 RGD:5509061
G Cacna2d2 calcium channel, voltage-dependent, alpha 2/delta subunit 2 JBrowse link 9 107,399,733 107,529,346 RGD:5509061
G Dbx1 developing brain homeobox 1 JBrowse link 7 49,631,499 49,636,835 RGD:5509061
G Galc galactosylceramidase JBrowse link 12 98,202,287 98,259,459 RGD:5509061
G Gli3 GLI-Kruppel family member GLI3 JBrowse link 13 15,463,723 15,730,026 RGD:5509061
G Hgs HGF-regulated tyrosine kinase substrate JBrowse link 11 120,467,605 120,483,984 RGD:5509061
G Kifap3 kinesin-associated protein 3 JBrowse link 1 163,762,138 163,917,107 RGD:5509061
G Lbx1 ladybird homeobox 1 JBrowse link 19 45,232,684 45,236,841 RGD:5509061
G Mapt microtubule-associated protein tau JBrowse link 11 104,229,409 104,332,090 RGD:5509061
G Ndufs4 NADH:ubiquinone oxidoreductase core subunit S4 JBrowse link 13 114,287,795 114,388,094 RGD:5509061
G Phox2b paired-like homeobox 2b JBrowse link 5 67,094,397 67,099,126 RGD:5509061
G Pou4f1 POU domain, class 4, transcription factor 1 JBrowse link 14 104,461,675 104,468,118 RGD:5509061
G Robo3 roundabout guidance receptor 3 JBrowse link 9 37,416,045 37,433,436 RGD:5509061
G Scube1 signal peptide, CUB domain, EGF-like 1 JBrowse link 15 83,602,583 83,725,051 RGD:5509061
G Ube4b ubiquitination factor E4B JBrowse link 4 149,328,416 149,428,161 RGD:5509061
G Uchl1 ubiquitin carboxy-terminal hydrolase L1 JBrowse link 5 66,676,121 66,687,234 RGD:5509061
G Vac14 Vac14 homolog (S. cerevisiae) JBrowse link 8 110,618,529 110,720,398 RGD:5509061
G Zfp423 zinc finger protein 423 JBrowse link 8 87,661,810 87,962,053 RGD:5509061
abnormal midbrain morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Anapc15 anaphase promoting complex C subunit 15 JBrowse link 7 101,881,300 101,901,849 RGD:5509061
G Bag6 BCL2-associated athanogene 6 JBrowse link 17 35,135,156 35,147,322 RGD:5509061
G Bbox1 butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase) JBrowse link 2 110,264,056 110,314,813 RGD:5509061
G Ccdc85c coiled-coil domain containing 85C JBrowse link 12 108,203,599 108,277,852 RGD:5509061
G Cdkn1c cyclin-dependent kinase inhibitor 1C (P57) JBrowse link 7 143,458,339 143,461,059 RGD:5509061
G Cecr2 CECR2, histone acetyl-lysine reader JBrowse link 6 120,666,314 120,771,191 RGD:5509061
G Emx2 empty spiracles homeobox 2 JBrowse link 19 59,458,690 59,465,357 RGD:5509061
G En1 engrailed 1 JBrowse link 1 120,602,487 120,607,991 RGD:5509061
G En2 engrailed 2 JBrowse link 5 28,165,696 28,172,190 RGD:5509061
G Eno2 enolase 2, gamma neuronal JBrowse link 6 124,760,053 124,769,673 RGD:5509061
G Erbb3 erb-b2 receptor tyrosine kinase 3 JBrowse link 10 128,567,523 128,589,635 RGD:5509061
G Fgf8 fibroblast growth factor 8 JBrowse link 19 45,736,798 45,742,941 RGD:5509061
G Fgfr1 fibroblast growth factor receptor 1 JBrowse link 8 25,518,759 25,575,718 RGD:5509061
G Foxb1 forkhead box B1 JBrowse link 9 69,757,710 69,760,940 RGD:5509061
G Fuz fuzzy planar cell polarity protein JBrowse link 7 44,894,305 44,900,624 RGD:5509061
G Gas2l2 growth arrest-specific 2 like 2 JBrowse link 11 83,421,635 83,429,521 RGD:5509061
G Gbx2 gastrulation brain homeobox 2 JBrowse link 1 89,927,962 89,931,176 RGD:5509061
G Gli3 GLI-Kruppel family member GLI3 JBrowse link 13 15,463,723 15,730,026 RGD:5509061
G Grid2 glutamate receptor, ionotropic, delta 2 JBrowse link 6 63,256,006 64,704,321 RGD:5509061
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano JBrowse link 6 113,067,428 113,077,244 RGD:5509061
G H2az2 H2A.Z histone variant 2 JBrowse link 11 6,427,226 6,444,511 RGD:5509061
G Hes1 hes family bHLH transcription factor 1 JBrowse link 16 30,065,357 30,067,796 RGD:5509061
G Hes3 hes family bHLH transcription factor 3 JBrowse link 4 152,285,250 152,291,911 RGD:5509061
G Htt huntingtin JBrowse link 5 34,761,721 34,912,534 RGD:5509061
G Inpp5e inositol polyphosphate-5-phosphatase E JBrowse link 2 26,396,249 26,409,244 RGD:5509061
G Kat2a K(lysine) acetyltransferase 2A JBrowse link 11 100,704,746 100,712,485 RGD:5509061
G Kif2a kinesin family member 2A JBrowse link 13 106,960,585 107,022,476 RGD:5509061
G Laptm4b lysosomal-associated protein transmembrane 4B JBrowse link 15 34,238,026 34,284,295 RGD:5509061
G Lrp6 low density lipoprotein receptor-related protein 6 JBrowse link 6 134,446,476 134,566,913 RGD:5509061
G Mtor mechanistic target of rapamycin kinase JBrowse link 4 148,448,582 148,557,685 RGD:5509061
G Mycbp2 MYC binding protein 2, E3 ubiquitin protein ligase JBrowse link 14 103,113,411 103,346,840 RGD:5509061
G Naglu alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB) JBrowse link 11 101,070,090 101,077,672 RGD:5509061
G Napa N-ethylmaleimide sensitive fusion protein attachment protein alpha JBrowse link 7 16,098,202 16,117,982 RGD:5509061
G Ndst1 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 JBrowse link 18 60,684,494 60,749,035 RGD:5509061
G Otx1 orthodenticle homeobox 1 JBrowse link 11 21,994,764 22,001,651 RGD:5509061
G Otx2 orthodenticle homeobox 2 JBrowse link 14 48,656,781 48,667,644 RGD:5509061
G Pax2 paired box 2 JBrowse link 19 44,746,601 44,838,269 RGD:5509061
G Pikfyve phosphoinositide kinase, FYVE type zinc finger containing JBrowse link 1 65,186,640 65,278,696 RGD:5509061
G Pitx3 paired-like homeodomain transcription factor 3 JBrowse link 19 46,135,281 46,148,325 RGD:5509061
G Psph phosphoserine phosphatase JBrowse link 5 129,765,558 129,787,443 RGD:5509061
G Pten phosphatase and tensin homolog JBrowse link 19 32,757,577 32,826,160 RGD:5509061
G Ranbp1 RAN binding protein 1 JBrowse link 16 18,239,979 18,248,694 RGD:5509061
G Rasa3 RAS p21 protein activator 3 JBrowse link 8 13,567,218 13,677,587 RGD:5509061
G Rhoa ras homolog family member A JBrowse link 9 108,306,160 108,337,943 RGD:5509061
G Rpgrip1l Rpgrip1-like JBrowse link 8 91,217,030 91,313,291 RGD:5509061
G Scrib scribbled planar cell polarity JBrowse link 15 76,047,162 76,069,784 RGD:5509061
G Shh sonic hedgehog JBrowse link 5 28,456,840 28,467,101 RGD:5509061
G Slc6a3 solute carrier family 6 (neurotransmitter transporter, dopamine), member 3 JBrowse link 13 73,536,128 73,578,672 RGD:5509061
G Smad1 SMAD family member 1 JBrowse link 8 79,338,395 79,399,428 RGD:5509061
G Smad9 SMAD family member 9 JBrowse link 3 54,755,455 54,801,662 RGD:5509061
G Snx3 sorting nexin 3 JBrowse link 10 42,502,054 42,535,369 RGD:5509061
G Sos1 SOS Ras/Rac guanine nucleotide exchange factor 1 JBrowse link 17 80,393,752 80,480,453 RGD:5509061
G Tgfbr2 transforming growth factor, beta receptor II JBrowse link 9 116,087,695 116,175,363 RGD:5509061
G Tulp3 tubby-like protein 3 JBrowse link 6 128,321,140 128,355,873 RGD:5509061
G Uchl5 ubiquitin carboxyl-terminal esterase L5 JBrowse link 1 143,777,234 143,807,466 RGD:5509061
G Vac14 Vac14 homolog (S. cerevisiae) JBrowse link 8 110,618,529 110,720,398 RGD:5509061
G Vangl2 VANGL planar cell polarity 2 JBrowse link 1 172,000,960 172,027,318 RGD:5509061
G Wnt1 wingless-type MMTV integration site family, member 1 JBrowse link 15 98,789,857 98,793,830 RGD:5509061
G Zic3 zinc finger protein of the cerebellum 3 JBrowse link X 58,030,628 58,036,630 RGD:5509061
abnormal midbrain roof plate morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ap3b1 adaptor-related protein complex 3, beta 1 subunit JBrowse link 13 94,358,960 94,566,316 RGD:5509061
abnormal oculomotor nucleus morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hes1 hes family bHLH transcription factor 1 JBrowse link 16 30,065,357 30,067,796 RGD:5509061
G Hes3 hes family bHLH transcription factor 3 JBrowse link 4 152,285,250 152,291,911 RGD:5509061
G Otx1 orthodenticle homeobox 1 JBrowse link 11 21,994,764 22,001,651 RGD:5509061
G Otx2 orthodenticle homeobox 2 JBrowse link 14 48,656,781 48,667,644 RGD:5509061
abnormal olivary pretectal nucleus morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Opn4 opsin 4 (melanopsin) JBrowse link 14 34,590,618 34,600,142 RGD:5509061
G Pou4f2 POU domain, class 4, transcription factor 2 JBrowse link 8 78,433,009 78,436,647 RGD:5509061
abnormal pons morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cacna1d calcium channel, voltage-dependent, L type, alpha 1D subunit JBrowse link 14 30,039,941 30,491,156 RGD:5509061
G Crygn crystallin, gamma N JBrowse link 5 24,751,002 24,757,848 RGD:5509061
G Egr2 early growth response 2 JBrowse link 10 67,534,469 67,542,188 RGD:5509061
G Galc galactosylceramidase JBrowse link 12 98,202,287 98,259,459 RGD:5509061
G Gbx2 gastrulation brain homeobox 2 JBrowse link 1 89,927,962 89,931,176 RGD:5509061
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano JBrowse link 6 113,067,428 113,077,244 RGD:5509061
G Hoxa1 homeobox A1 JBrowse link 6 52,155,367 52,160,007 RGD:5509061
G Hoxb1 homeobox B1 JBrowse link 11 96,365,746 96,368,254 RGD:5509061
G Hoxb2 homeobox B2 JBrowse link 11 96,351,632 96,354,020 RGD:5509061
G Kif2a kinesin family member 2A JBrowse link 13 106,960,585 107,022,476 RGD:5509061
G Luzp1 leucine zipper protein 1 JBrowse link 4 136,462,609 136,554,725 RGD:5509061
G Naglu alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB) JBrowse link 11 101,070,090 101,077,672 RGD:5509061
G Nefl neurofilament, light polypeptide JBrowse link 14 68,083,863 68,089,095 RGD:5509061
G Nfib nuclear factor I/B JBrowse link 4 82,290,173 82,506,751 RGD:5509061
G Npc1 NPC intracellular cholesterol transporter 1 JBrowse link 18 12,189,694 12,236,506 RGD:5509061
G Pikfyve phosphoinositide kinase, FYVE type zinc finger containing JBrowse link 1 65,186,640 65,278,696 RGD:5509061
G Robo3 roundabout guidance receptor 3 JBrowse link 9 37,416,045 37,433,436 RGD:5509061
G Usp14 ubiquitin specific peptidase 14 JBrowse link 18 9,993,615 10,030,149 RGD:5509061
G Vac14 Vac14 homolog (S. cerevisiae) JBrowse link 8 110,618,529 110,720,398 RGD:5509061
abnormal pontine nuclei morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adgrg1 adhesion G protein-coupled receptor G1 JBrowse link 8 94,974,756 95,014,208 RGD:5509061
G Dcc deleted in colorectal carcinoma JBrowse link 18 71,253,613 72,351,228 RGD:5509061
G Kif2a kinesin family member 2A JBrowse link 13 106,960,585 107,022,476 RGD:5509061
G Ntn1 netrin 1 JBrowse link 11 68,209,364 68,386,826 RGD:5509061
G Usp14 ubiquitin specific peptidase 14 JBrowse link 18 9,993,615 10,030,149 RGD:5509061
abnormal pre-Botzinger complex morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dbx1 developing brain homeobox 1 JBrowse link 7 49,631,499 49,636,835 RGD:5509061
G Kdm6b KDM1 lysine (K)-specific demethylase 6B JBrowse link 11 69,398,508 69,420,367 RGD:5509061
G Robo3 roundabout guidance receptor 3 JBrowse link 9 37,416,045 37,433,436 RGD:5509061
abnormal pretectal region morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Emx2 empty spiracles homeobox 2 JBrowse link 19 59,458,690 59,465,357 RGD:5509061
G Lmx1b LIM homeobox transcription factor 1 beta JBrowse link 2 33,560,965 33,641,208 RGD:5509061
G Otx1 orthodenticle homeobox 1 JBrowse link 11 21,994,764 22,001,651 RGD:5509061
G Otx2 orthodenticle homeobox 2 JBrowse link 14 48,656,781 48,667,644 RGD:5509061
G Pax6 paired box 6 JBrowse link 2 105,668,896 105,698,410 RGD:5509061
abnormal pyramidal decussation morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bhlhe22 basic helix-loop-helix family, member e22 JBrowse link 3 18,054,325 18,057,514 RGD:5509061
G Dcc deleted in colorectal carcinoma JBrowse link 18 71,253,613 72,351,228 RGD:5509061
G Ntn1 netrin 1 JBrowse link 11 68,209,364 68,386,826 RGD:5509061
G Unc5c unc-5 netrin receptor C JBrowse link 3 141,465,564 141,834,924 RGD:5509061
abnormal Raphe nucleus morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G En1 engrailed 1 JBrowse link 1 120,602,487 120,607,991 RGD:5509061
G Fgf8 fibroblast growth factor 8 JBrowse link 19 45,736,798 45,742,941 RGD:5509061
G Gata3 GATA binding protein 3 JBrowse link 2 9,857,078 9,887,953 RGD:5509061
G Lmx1b LIM homeobox transcription factor 1 beta JBrowse link 2 33,560,965 33,641,208 RGD:5509061
abnormal red nucleus morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G En1 engrailed 1 JBrowse link 1 120,602,487 120,607,991 RGD:5509061
G Otx1 orthodenticle homeobox 1 JBrowse link 11 21,994,764 22,001,651 RGD:5509061
G Otx2 orthodenticle homeobox 2 JBrowse link 14 48,656,781 48,667,644 RGD:5509061
G Pou4f1 POU domain, class 4, transcription factor 1 JBrowse link 14 104,461,675 104,468,118 RGD:5509061
abnormal retrotrapezoid nucleus morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Egr2 early growth response 2 JBrowse link 10 67,534,469 67,542,188 RGD:5509061
G Kcnk5 potassium channel, subfamily K, member 5 JBrowse link 14 20,140,057 20,181,782 RGD:5509061
G Phox2b paired-like homeobox 2b JBrowse link 5 67,094,397 67,099,126 RGD:5509061
abnormal substantia nigra morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adh7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide JBrowse link 3 138,198,064 138,232,042 RGD:5509061
G Bdnf brain derived neurotrophic factor JBrowse link 2 109,674,700 109,727,043 RGD:5509061
G En1 engrailed 1 JBrowse link 1 120,602,487 120,607,991 RGD:5509061
G Esr2 estrogen receptor 2 (beta) JBrowse link 12 76,120,419 76,177,259 RGD:5509061
G Fgf8 fibroblast growth factor 8 JBrowse link 19 45,736,798 45,742,941 RGD:5509061
G Gdnf glial cell line derived neurotrophic factor JBrowse link 15 7,810,048 7,837,580 RGD:5509061
G Gpr37 G protein-coupled receptor 37 JBrowse link 6 25,668,523 25,689,980 RGD:5509061
G H2az2 H2A.Z histone variant 2 JBrowse link 11 6,427,226 6,444,511 RGD:5509061
G Hdc histidine decarboxylase JBrowse link 2 126,593,659 126,624,025 RGD:5509061
G Nr4a2 nuclear receptor subfamily 4, group A, member 2 JBrowse link 2 57,106,830 57,124,003 RGD:5509061
G Slc6a3 solute carrier family 6 (neurotransmitter transporter, dopamine), member 3 JBrowse link 13 73,536,128 73,578,672 RGD:5509061
G Spp1 secreted phosphoprotein 1 JBrowse link 5 104,435,111 104,441,053 RGD:5509061
abnormal substantia nigra pars compacta morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bdnf brain derived neurotrophic factor JBrowse link 2 109,674,700 109,727,043 RGD:5509061
G En1 engrailed 1 JBrowse link 1 120,602,487 120,607,991 RGD:5509061
G H2az2 H2A.Z histone variant 2 JBrowse link 11 6,427,226 6,444,511 RGD:5509061
G Hyou1 hypoxia up-regulated 1 JBrowse link 9 44,379,490 44,392,369 RGD:5509061
G Il6 interleukin 6 JBrowse link 5 30,013,114 30,019,975 RGD:5509061
G Kcnj6 potassium inwardly-rectifying channel, subfamily J, member 6 JBrowse link 16 94,744,980 94,997,696 RGD:5509061
G Mfn2 mitofusin 2 JBrowse link 4 147,873,586 147,904,909 RGD:5509061
G Park7 Parkinson disease (autosomal recessive, early onset) 7 JBrowse link 4 150,897,133 150,909,921 RGD:5509061
G Pitx3 paired-like homeodomain transcription factor 3 JBrowse link 19 46,135,281 46,148,325 RGD:5509061
G Prkn parkin RBR E3 ubiquitin protein ligase JBrowse link 17 10,840,359 12,063,370 RGD:5509061
G Pten phosphatase and tensin homolog JBrowse link 19 32,757,577 32,826,160 RGD:5509061
G Slc6a3 solute carrier family 6 (neurotransmitter transporter, dopamine), member 3 JBrowse link 13 73,536,128 73,578,672 RGD:5509061
abnormal substantia nigra pars reticulata morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nr1h2 nuclear receptor subfamily 1, group H, member 2 JBrowse link 7 44,549,616 44,553,968 RGD:5509061
G Nr1h3 nuclear receptor subfamily 1, group H, member 3 JBrowse link 2 91,184,061 91,202,829 RGD:5509061
G Pten phosphatase and tensin homolog JBrowse link 19 32,757,577 32,826,160 RGD:5509061
G Slc6a3 solute carrier family 6 (neurotransmitter transporter, dopamine), member 3 JBrowse link 13 73,536,128 73,578,672 RGD:5509061
abnormal superior colliculus morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ap3b1 adaptor-related protein complex 3, beta 1 subunit JBrowse link 13 94,358,960 94,566,316 RGD:5509061
G Cd247 CD247 antigen JBrowse link 1 165,779,952 165,871,153 RGD:5509061
G Chrnb2 cholinergic receptor, nicotinic, beta polypeptide 2 (neuronal) JBrowse link 3 89,753,448 89,764,632 RGD:5509061
G Fkrp fukutin related protein JBrowse link 7 16,809,267 16,816,732 RGD:5509061
G Gli3 GLI-Kruppel family member GLI3 JBrowse link 13 15,463,723 15,730,026 RGD:5509061
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano JBrowse link 6 113,067,428 113,077,244 RGD:5509061
G Ireb2 iron responsive element binding protein 2 JBrowse link 9 54,862,658 54,912,534 RGD:5509061
G Lmx1b LIM homeobox transcription factor 1 beta JBrowse link 2 33,560,965 33,641,208 RGD:5509061
G Ngfr nerve growth factor receptor (TNFR superfamily, member 16) JBrowse link 11 95,568,818 95,587,698 RGD:5509061
G Otx1 orthodenticle homeobox 1 JBrowse link 11 21,994,764 22,001,651 RGD:5509061
G Otx2 orthodenticle homeobox 2 JBrowse link 14 48,656,781 48,667,644 RGD:5509061
G Pomgnt1 protein O-linked mannose beta 1,2-N-acetylglucosaminyltransferase JBrowse link 4 116,150,498 116,159,844 RGD:5509061
G Pou4f2 POU domain, class 4, transcription factor 2 JBrowse link 8 78,433,009 78,436,647 RGD:5509061
G Strbp spermatid perinuclear RNA binding protein JBrowse link 2 37,569,868 37,703,878 RGD:5509061
G Tal2 T cell acute lymphocytic leukemia 2 JBrowse link 4 53,779,701 53,788,712 RGD:5509061
G Tenm2 teneurin transmembrane protein 2 JBrowse link 11 36,006,656 37,237,053 RGD:5509061
G Vac14 Vac14 homolog (S. cerevisiae) JBrowse link 8 110,618,529 110,720,398 RGD:5509061
abnormal tectum morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ascl1 achaete-scute family bHLH transcription factor 1 JBrowse link 10 87,490,819 87,493,660 RGD:5509061
G Emx2 empty spiracles homeobox 2 JBrowse link 19 59,458,690 59,465,357 RGD:5509061
G En1 engrailed 1 JBrowse link 1 120,602,487 120,607,991 RGD:5509061
G En2 engrailed 2 JBrowse link 5 28,165,696 28,172,190 RGD:5509061
G Fbxw7 F-box and WD-40 domain protein 7 JBrowse link 3 84,814,990 84,979,198 RGD:5509061
G Fkrp fukutin related protein JBrowse link 7 16,809,267 16,816,732 RGD:5509061
G Gli3 GLI-Kruppel family member GLI3 JBrowse link 13 15,463,723 15,730,026 RGD:5509061
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano JBrowse link 6 113,067,428 113,077,244 RGD:5509061
G Jun jun proto-oncogene JBrowse link 4 95,049,036 95,052,222 RGD:5509061
G Lmx1b LIM homeobox transcription factor 1 beta JBrowse link 2 33,560,965 33,641,208 RGD:5509061
G Mid1 midline 1 JBrowse link X 169,685,199 169,990,798 RGD:5509061
G Neurod4 neurogenic differentiation 4 JBrowse link 10 130,268,152 130,280,254 RGD:5509061
G Pax6 paired box 6 JBrowse link 2 105,668,896 105,698,410 RGD:5509061
G Smo smoothened, frizzled class receptor JBrowse link 6 29,735,497 29,761,366 RGD:5509061
G Tal2 T cell acute lymphocytic leukemia 2 JBrowse link 4 53,779,701 53,788,712 RGD:5509061
abnormal tegmentum morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gdnf glial cell line derived neurotrophic factor JBrowse link 15 7,810,048 7,837,580 RGD:5509061
G Kif2a kinesin family member 2A JBrowse link 13 106,960,585 107,022,476 RGD:5509061
G Nr4a2 nuclear receptor subfamily 4, group A, member 2 JBrowse link 2 57,106,830 57,124,003 RGD:5509061
G Otx1 orthodenticle homeobox 1 JBrowse link 11 21,994,764 22,001,651 RGD:5509061
G Otx2 orthodenticle homeobox 2 JBrowse link 14 48,656,781 48,667,644 RGD:5509061
G Tmem67 transmembrane protein 67 JBrowse link 4 12,039,355 12,090,020 RGD:5509061
abnormal trigeminal motor nucleus morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dst dystonin JBrowse link 1 33,907,888 34,308,662 RGD:5509061
G Grid2 glutamate receptor, ionotropic, delta 2 JBrowse link 6 63,256,006 64,704,321 RGD:5509061
G Sod2 superoxide dismutase 2, mitochondrial JBrowse link 17 13,007,839 13,018,119 RGD:5509061
abnormal trigeminal V mesencephalic nucleus morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G H2az2 H2A.Z histone variant 2 JBrowse link 11 6,427,226 6,444,511 RGD:5509061
G Kif2a kinesin family member 2A JBrowse link 13 106,960,585 107,022,476 RGD:5509061
G Otx1 orthodenticle homeobox 1 JBrowse link 11 21,994,764 22,001,651 RGD:5509061
G Otx2 orthodenticle homeobox 2 JBrowse link 14 48,656,781 48,667,644 RGD:5509061
G Sod2 superoxide dismutase 2, mitochondrial JBrowse link 17 13,007,839 13,018,119 RGD:5509061
absent cerebral aqueduct term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kdm2b lysine (K)-specific demethylase 2B JBrowse link 5 122,870,664 122,989,270 RGD:5509061
absent colliculi term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G En1 engrailed 1 JBrowse link 1 120,602,487 120,607,991 RGD:5509061
G En2 engrailed 2 JBrowse link 5 28,165,696 28,172,190 RGD:5509061
absent facial nuclei term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hoxa1 homeobox A1 JBrowse link 6 52,155,367 52,160,007 RGD:5509061
G Hoxb1 homeobox B1 JBrowse link 11 96,365,746 96,368,254 RGD:5509061
G Hoxb2 homeobox B2 JBrowse link 11 96,351,632 96,354,020 RGD:5509061
absent inferior colliculus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G En1 engrailed 1 JBrowse link 1 120,602,487 120,607,991 RGD:5509061
G En2 engrailed 2 JBrowse link 5 28,165,696 28,172,190 RGD:5509061
G Ext1 exostosin glycosyltransferase 1 JBrowse link 15 53,068,261 53,346,183 RGD:5509061
G Fgf8 fibroblast growth factor 8 JBrowse link 19 45,736,798 45,742,941 RGD:5509061
G Fgfr1 fibroblast growth factor receptor 1 JBrowse link 8 25,518,759 25,575,718 RGD:5509061
G Gli3 GLI-Kruppel family member GLI3 JBrowse link 13 15,463,723 15,730,026 RGD:5509061
G H2az2 H2A.Z histone variant 2 JBrowse link 11 6,427,226 6,444,511 RGD:5509061
G Lrp6 low density lipoprotein receptor-related protein 6 JBrowse link 6 134,446,476 134,566,913 RGD:5509061
G Tfap2d transcription factor AP-2, delta JBrowse link 1 19,103,022 19,168,592 RGD:5509061
absent mesencephalic trigeminal nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lef1 lymphoid enhancer binding factor 1 JBrowse link 3 131,110,277 131,224,357 RGD:5509061
absent midbrain term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apc APC, WNT signaling pathway regulator JBrowse link 18 34,220,297 34,322,190 RGD:5509061
G Edil3 EGF-like repeats and discoidin I-like domains 3 JBrowse link 13 88,821,472 89,323,225 RGD:5509061
G En1 engrailed 1 JBrowse link 1 120,602,487 120,607,991 RGD:5509061
G En2 engrailed 2 JBrowse link 5 28,165,696 28,172,190 RGD:5509061
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano JBrowse link 6 113,067,428 113,077,244 RGD:5509061
G H2az2 H2A.Z histone variant 2 JBrowse link 11 6,427,226 6,444,511 RGD:5509061
G Lhx1 LIM homeobox protein 1 JBrowse link 11 84,517,975 84,525,534 RGD:5509061
G Nf1 neurofibromin 1 JBrowse link 11 79,339,590 79,581,609 RGD:5509061
G Nodal nodal JBrowse link 10 61,417,972 61,425,338 RGD:5509061
G Otx1 orthodenticle homeobox 1 JBrowse link 11 21,994,764 22,001,651 RGD:5509061
G Otx2 orthodenticle homeobox 2 JBrowse link 14 48,656,781 48,667,644 RGD:5509061
G Rasa1 RAS p21 protein activator 1 JBrowse link 13 85,214,699 85,289,486 RGD:5509061
G Smad2 SMAD family member 2 JBrowse link 18 76,241,090 76,311,748 RGD:5509061
G Ssbp3 single-stranded DNA binding protein 3 JBrowse link 4 106,911,470 107,049,694 RGD:5509061
G Wls wntless WNT ligand secretion mediator JBrowse link 3 159,839,650 159,938,666 RGD:5509061
G Wnt1 wingless-type MMTV integration site family, member 1 JBrowse link 15 98,789,857 98,793,830 RGD:5509061
absent red nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pou4f1 POU domain, class 4, transcription factor 1 JBrowse link 14 104,461,675 104,468,118 RGD:5509061
absent superior colliculus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G En1 engrailed 1 JBrowse link 1 120,602,487 120,607,991 RGD:5509061
G En2 engrailed 2 JBrowse link 5 28,165,696 28,172,190 RGD:5509061
absent superior olivary complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hoxa1 homeobox A1 JBrowse link 6 52,155,367 52,160,007 RGD:5509061
absent tectum term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G En1 engrailed 1 JBrowse link 1 120,602,487 120,607,991 RGD:5509061
G En2 engrailed 2 JBrowse link 5 28,165,696 28,172,190 RGD:5509061
G H2az2 H2A.Z histone variant 2 JBrowse link 11 6,427,226 6,444,511 RGD:5509061
G Otx1 orthodenticle homeobox 1 JBrowse link 11 21,994,764 22,001,651 RGD:5509061
G Otx2 orthodenticle homeobox 2 JBrowse link 14 48,656,781 48,667,644 RGD:5509061
G Pax2 paired box 2 JBrowse link 19 44,746,601 44,838,269 RGD:5509061
G Wls wntless WNT ligand secretion mediator JBrowse link 3 159,839,650 159,938,666 RGD:5509061
absent tegmentum term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G H2az2 H2A.Z histone variant 2 JBrowse link 11 6,427,226 6,444,511 RGD:5509061
G Otx1 orthodenticle homeobox 1 JBrowse link 11 21,994,764 22,001,651 RGD:5509061
G Otx2 orthodenticle homeobox 2 JBrowse link 14 48,656,781 48,667,644 RGD:5509061
G Wls wntless WNT ligand secretion mediator JBrowse link 3 159,839,650 159,938,666 RGD:5509061
cerebral aqueductal stenosis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bicd2 BICD cargo adaptor 2 JBrowse link 13 49,341,549 49,387,026 RGD:5509061
G Ccdc85c coiled-coil domain containing 85C JBrowse link 12 108,203,599 108,277,852 RGD:5509061
G Cdc42 cell division cycle 42 JBrowse link 4 137,319,696 137,357,759 RGD:5509061
G D430042O09Rik RIKEN cDNA D430042O09 gene JBrowse link 7 125,707,855 125,874,795 RGD:5509061
G Rfx4 regulatory factor X, 4 (influences HLA class II expression) JBrowse link 10 84,756,036 84,906,538 RGD:5509061
G Rnd3 Rho family GTPase 3 JBrowse link 2 51,130,439 51,149,111 RGD:5509061
G Sptan1 spectrin alpha, non-erythrocytic 1 JBrowse link 2 29,965,560 30,031,451 RGD:5509061
G Ulk4 unc-51-like kinase 4 JBrowse link 9 120,964,454 121,286,159 RGD:5509061
G Wasl Wiskott-Aldrich syndrome-like (human) JBrowse link 6 24,613,810 24,664,995 RGD:5509061
decreased brainstem copper level term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp7a ATPase, Cu++ transporting, alpha polypeptide JBrowse link X 106,027,224 106,128,161 RGD:5509061
decreased colliculi size term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G En2 engrailed 2 JBrowse link 5 28,165,696 28,172,190 RGD:5509061
decreased inferior colliculus size term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G En1 engrailed 1 JBrowse link 1 120,602,487 120,607,991 RGD:5509061
G En2 engrailed 2 JBrowse link 5 28,165,696 28,172,190 RGD:5509061
G Fgf17 fibroblast growth factor 17 JBrowse link 14 70,636,203 70,642,268 RGD:5509061
G Fgf8 fibroblast growth factor 8 JBrowse link 19 45,736,798 45,742,941 RGD:5509061
G Fgfr1 fibroblast growth factor receptor 1 JBrowse link 8 25,518,759 25,575,718 RGD:5509061
G Foxb1 forkhead box B1 JBrowse link 9 69,757,710 69,760,940 RGD:5509061
G Kat6b K(lysine) acetyltransferase 6B JBrowse link 14 21,499,216 21,672,478 RGD:5509061
G Mid1 midline 1 JBrowse link X 169,685,199 169,990,798 RGD:5509061
G Otx1 orthodenticle homeobox 1 JBrowse link 11 21,994,764 22,001,651 RGD:5509061
G Otx2 orthodenticle homeobox 2 JBrowse link 14 48,656,781 48,667,644 RGD:5509061
G Pax5 paired box 5 JBrowse link 4 44,524,748 44,710,694 RGD:5509061
decreased midbrain size term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cit citron JBrowse link 5 115,845,224 116,008,953 RGD:5509061
G Csnk2a1 casein kinase 2, alpha 1 polypeptide JBrowse link 2 152,226,535 152,281,856 RGD:5509061
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 JBrowse link 19 30,545,876 30,549,496 RGD:5509061
G Dyrk1a dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a JBrowse link 16 94,569,947 94,695,519 RGD:5509061
G En1 engrailed 1 JBrowse link 1 120,602,487 120,607,991 RGD:5509061
G En2 engrailed 2 JBrowse link 5 28,165,696 28,172,190 RGD:5509061
G Gdf7 growth differentiation factor 7 JBrowse link 12 8,297,918 8,301,954 RGD:5509061
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano JBrowse link 6 113,067,428 113,077,244 RGD:5509061
G H2az2 H2A.Z histone variant 2 JBrowse link 11 6,427,226 6,444,511 RGD:5509061
G Hgs HGF-regulated tyrosine kinase substrate JBrowse link 11 120,467,605 120,483,984 RGD:5509061
G Hsd17b7 hydroxysteroid (17-beta) dehydrogenase 7 JBrowse link 1 169,949,535 169,969,242 RGD:5509061
G Lmnb1 lamin B1 JBrowse link 18 56,707,813 56,753,424 RGD:5509061
G Otx1 orthodenticle homeobox 1 JBrowse link 11 21,994,764 22,001,651 RGD:5509061
G Otx2 orthodenticle homeobox 2 JBrowse link 14 48,656,781 48,667,644 RGD:5509061
G Pdss2 prenyl (solanesyl) diphosphate synthase, subunit 2 JBrowse link 10 43,218,248 43,464,882 RGD:5509061
G Rax retina and anterior neural fold homeobox JBrowse link 18 65,934,639 65,939,089 RGD:5509061
G Shh sonic hedgehog JBrowse link 5 28,456,840 28,467,101 RGD:5509061
G Smg9 smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans) JBrowse link 7 24,397,517 24,422,777 RGD:5509061
G Ssbp3 single-stranded DNA binding protein 3 JBrowse link 4 106,911,470 107,049,694 RGD:5509061
G Tdgf1 teratocarcinoma-derived growth factor 1 JBrowse link 9 110,939,608 110,946,158 RGD:5509061
G Tubb2b tubulin, beta 2B class IIB JBrowse link 13 34,127,008 34,130,354 RGD:5509061
G Usp14 ubiquitin specific peptidase 14 JBrowse link 18 9,993,615 10,030,149 RGD:5509061
G Wnt1 wingless-type MMTV integration site family, member 1 JBrowse link 15 98,789,857 98,793,830 RGD:5509061
decreased pons size term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cacna2d2 calcium channel, voltage-dependent, alpha 2/delta subunit 2 JBrowse link 9 107,399,733 107,529,346 RGD:5509061
G Hgs HGF-regulated tyrosine kinase substrate JBrowse link 11 120,467,605 120,483,984 RGD:5509061
decreased substantia nigra size term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G 7630403G23Rik RIKEN cDNA 7630403G23 gene JBrowse link 9 34,042,371 34,059,019 RGD:5509061
G Hipk2 homeodomain interacting protein kinase 2 JBrowse link 6 38,687,512 38,876,331 RGD:5509061
G Otx1 orthodenticle homeobox 1 JBrowse link 11 21,994,764 22,001,651 RGD:5509061
G Otx2 orthodenticle homeobox 2 JBrowse link 14 48,656,781 48,667,644 RGD:5509061
G Pitx3 paired-like homeodomain transcription factor 3 JBrowse link 19 46,135,281 46,148,325 RGD:5509061
G Prkn parkin RBR E3 ubiquitin protein ligase JBrowse link 17 10,840,359 12,063,370 RGD:5509061
G Sod2 superoxide dismutase 2, mitochondrial JBrowse link 17 13,007,839 13,018,119 RGD:5509061
decreased superior colliculus size term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dyrk1a dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a JBrowse link 16 94,569,947 94,695,519 RGD:5509061
G En1 engrailed 1 JBrowse link 1 120,602,487 120,607,991 RGD:5509061
G En2 engrailed 2 JBrowse link 5 28,165,696 28,172,190 RGD:5509061
G Lmx1b LIM homeobox transcription factor 1 beta JBrowse link 2 33,560,965 33,641,208 RGD:5509061
G Otx1 orthodenticle homeobox 1 JBrowse link 11 21,994,764 22,001,651 RGD:5509061
G Tal2 T cell acute lymphocytic leukemia 2 JBrowse link 4 53,779,701 53,788,712 RGD:5509061
decreased tegmentum size term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hipk2 homeodomain interacting protein kinase 2 JBrowse link 6 38,687,512 38,876,331 RGD:5509061
enlarged tectum term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Emx2 empty spiracles homeobox 2 JBrowse link 19 59,458,690 59,465,357 RGD:5509061
G En1 engrailed 1 JBrowse link 1 120,602,487 120,607,991 RGD:5509061
G Fgf8 fibroblast growth factor 8 JBrowse link 19 45,736,798 45,742,941 RGD:5509061
G Gli3 GLI-Kruppel family member GLI3 JBrowse link 13 15,463,723 15,730,026 RGD:5509061
G Otx2 orthodenticle homeobox 2 JBrowse link 14 48,656,781 48,667,644 RGD:5509061
G Smo smoothened, frizzled class receptor JBrowse link 6 29,735,497 29,761,366 RGD:5509061
G Suz12 SUZ12 polycomb repressive complex 2 subunit JBrowse link 11 79,993,106 80,034,123 RGD:5509061
increased inferior colliculus size term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G En1 engrailed 1 JBrowse link 1 120,602,487 120,607,991 RGD:5509061
G Gbx2 gastrulation brain homeobox 2 JBrowse link 1 89,927,962 89,931,176 RGD:5509061
G Otx1 orthodenticle homeobox 1 JBrowse link 11 21,994,764 22,001,651 RGD:5509061
G Suz12 SUZ12 polycomb repressive complex 2 subunit JBrowse link 11 79,993,106 80,034,123 RGD:5509061
G Unc5c unc-5 netrin receptor C JBrowse link 3 141,465,564 141,834,924 RGD:5509061
increased midbrain size term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Casp9 caspase 9 JBrowse link 4 141,793,612 141,815,978 RGD:5509061
G Edil3 EGF-like repeats and discoidin I-like domains 3 JBrowse link 13 88,821,472 89,323,225 RGD:5509061
G H2az2 H2A.Z histone variant 2 JBrowse link 11 6,427,226 6,444,511 RGD:5509061
G Kdm2b lysine (K)-specific demethylase 2B JBrowse link 5 122,870,664 122,989,270 RGD:5509061
G Pak1ip1 PAK1 interacting protein 1 JBrowse link 13 41,001,010 41,013,033 RGD:5509061
G Rhoa ras homolog family member A JBrowse link 9 108,306,160 108,337,943 RGD:5509061
G Shh sonic hedgehog JBrowse link 5 28,456,840 28,467,101 RGD:5509061
G Six3 sine oculis-related homeobox 3 JBrowse link 17 85,613,608 85,626,191 RGD:5509061
increased pons size term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Otx1 orthodenticle homeobox 1 JBrowse link 11 21,994,764 22,001,651 RGD:5509061
G Otx2 orthodenticle homeobox 2 JBrowse link 14 48,656,781 48,667,644 RGD:5509061
increased superior colliculus size term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G En1 engrailed 1 JBrowse link 1 120,602,487 120,607,991 RGD:5509061
G Otx1 orthodenticle homeobox 1 JBrowse link 11 21,994,764 22,001,651 RGD:5509061
G Suz12 SUZ12 polycomb repressive complex 2 subunit JBrowse link 11 79,993,106 80,034,123 RGD:5509061
midbrain atrophy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Smpd1 sphingomyelin phosphodiesterase 1, acid lysosomal JBrowse link 7 105,554,360 105,558,389 RGD:5509061
midbrain hyperplasia term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apaf1 apoptotic peptidase activating factor 1 JBrowse link 10 90,989,311 91,082,743 RGD:5509061
G Cycs cytochrome c, somatic JBrowse link 6 50,562,563 50,566,569 RGD:5509061
G Pax3 paired box 3 JBrowse link 1 78,101,267 78,197,136 RGD:5509061
midbrain hypoplasia term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccnf cyclin F JBrowse link 17 24,223,230 24,251,409 RGD:5509061
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 JBrowse link 19 37,697,738 37,701,536 RGD:5509061
G Cyp26c1 cytochrome P450, family 26, subfamily c, polypeptide 1 JBrowse link 19 37,685,112 37,693,320 RGD:5509061
G Erf Ets2 repressor factor JBrowse link 7 25,242,560 25,251,104 RGD:5509061
G Hsd17b7 hydroxysteroid (17-beta) dehydrogenase 7 JBrowse link 1 169,949,535 169,969,242 RGD:5509061
G Otx2 orthodenticle homeobox 2 JBrowse link 14 48,656,781 48,667,644 RGD:5509061
G Pdss2 prenyl (solanesyl) diphosphate synthase, subunit 2 JBrowse link 10 43,218,248 43,464,882 RGD:5509061
G Pign phosphatidylinositol glycan anchor biosynthesis, class N JBrowse link 1 105,518,421 105,663,741 RGD:5509061
small facial motor nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cntfr ciliary neurotrophic factor receptor JBrowse link 4 41,657,498 41,697,091 RGD:5509061
G Hoxa1 homeobox A1 JBrowse link 6 52,155,367 52,160,007 RGD:5509061
G Hoxb1 homeobox B1 JBrowse link 11 96,365,746 96,368,254 RGD:5509061
G Ntrk2 neurotrophic tyrosine kinase, receptor, type 2 JBrowse link 13 58,806,472 59,133,970 RGD:5509061
G Phox2b paired-like homeobox 2b JBrowse link 5 67,094,397 67,099,126 RGD:5509061
small mesencephalic trigeminal nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bdnf brain derived neurotrophic factor JBrowse link 2 109,674,700 109,727,043 RGD:5509061
G Ntf3 neurotrophin 3 JBrowse link 6 126,101,412 126,166,772 RGD:5509061
small tectum term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ascl1 achaete-scute family bHLH transcription factor 1 JBrowse link 10 87,490,819 87,493,660 RGD:5509061
G Dyrk1a dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a JBrowse link 16 94,569,947 94,695,519 RGD:5509061
G En1 engrailed 1 JBrowse link 1 120,602,487 120,607,991 RGD:5509061
G En2 engrailed 2 JBrowse link 5 28,165,696 28,172,190 RGD:5509061
G H2az2 H2A.Z histone variant 2 JBrowse link 11 6,427,226 6,444,511 RGD:5509061
G Lmx1b LIM homeobox transcription factor 1 beta JBrowse link 2 33,560,965 33,641,208 RGD:5509061
G Neurod4 neurogenic differentiation 4 JBrowse link 10 130,268,152 130,280,254 RGD:5509061
G Otx1 orthodenticle homeobox 1 JBrowse link 11 21,994,764 22,001,651 RGD:5509061
G Otx2 orthodenticle homeobox 2 JBrowse link 14 48,656,781 48,667,644 RGD:5509061
small trigeminal motor nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cntfr ciliary neurotrophic factor receptor JBrowse link 4 41,657,498 41,697,091 RGD:5509061

Term paths to the root
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Term Annotations click to browse term
  mammalian phenotype 13455
    nervous system phenotype 3698
      abnormal nervous system morphology 2938
        abnormal brain morphology 1811
          abnormal brainstem morphology 252
            abnormal Raphe nucleus morphology 4
            abnormal brainstem copper level + 1
            abnormal medulla oblongata morphology + 32
            abnormal midbrain morphology + 169
            abnormal pons morphology + 58
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.