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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term:abnormal embryonic/fetal subventricular zone morphology
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Accession:MP:0004274 term browser browse the term
Definition:any structural anomaly of the transient proliferative population of neurons that expands exponentially during late prenatal development; it is a continuous germinal zone distinct from the ventricular zone that surrounds the brain ventricles
Synonyms:exact_synonym: abnormal embryonic subventricular zone;   abnormal embryonic/foetal subventricular zone morphology
 broad_synonym: abnormal SVZ;   abnormal subependymal layer;   abnormal subependymal plate;   abnormal subependymal zone;   abnormal subventricular zone


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abnormal embryonic/fetal subventricular zone morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adam10 a disintegrin and metallopeptidase domain 10 IAGP MGI PMID:20371803 NCBI chr 9:70,586,133...70,687,511
Ensembl chr 9:70,586,279...70,687,511 		JBrowse link
G Adgra2 adhesion G protein-coupled receptor A2 IAGP MGI PMID:21071672 NCBI chr 8:27,575,546...27,613,464
Ensembl chr 8:27,575,611...27,613,464 		JBrowse link
G Apaf1 apoptotic peptidase activating factor 1 IAGP MGI PMID:10656767 NCBI chr10:90,825,173...90,918,688
Ensembl chr10:90,825,173...90,918,632 		JBrowse link
G Arhgap11a Rho GTPase activating protein 11A IAGP MGI PMID:33938018 NCBI chr 2:113,661,837...113,679,006
Ensembl chr 2:113,661,837...113,679,006 		JBrowse link
G Atr ataxia telangiectasia and Rad3 related IAGP MGI PMID:22266795 NCBI chr 9:95,739,655...95,834,813
Ensembl chr 9:95,739,650...95,833,834 		JBrowse link
G Cdk5rap2 CDK5 regulatory subunit associated protein 2 IAGP MGI PMID:20460369 NCBI chr 4:70,135,092...70,328,672
Ensembl chr 4:70,135,093...70,328,680 		JBrowse link
G Celsr3 cadherin, EGF LAG seven-pass G-type receptor 3 IAGP MGI PMID:19332558 NCBI chr 9:108,703,244...108,730,168
Ensembl chr 9:108,703,519...108,730,168 		JBrowse link
G Cux2 cut-like homeobox 2 IAGP MGI PMID:18033766 NCBI chr 5:121,996,025...122,188,522
Ensembl chr 5:121,994,429...122,188,165 		JBrowse link
G Dync1h1 dynein cytoplasmic 1 heavy chain 1 IAGP MGI PMID:36933672 NCBI chr12:110,567,829...110,633,378
Ensembl chr12:110,567,886...110,633,379 		JBrowse link
G Edil3 EGF-like repeats and discoidin I-like domains 3 IAGP MGI PMID:17468181 NCBI chr13:88,969,591...89,471,344
Ensembl chr13:88,969,591...89,471,342 		JBrowse link
G Eml1 echinoderm microtubule associated protein like 1 IAGP MGI PMID:31173351 NCBI chr12:108,337,265...108,505,835
Ensembl chr12:108,337,216...108,505,876 		JBrowse link
G Emx1 empty spiracles homeobox 1 IAGP MGI PMID:20667915 PMID:23293287 NCBI chr 6:85,164,913...85,181,445
Ensembl chr 6:85,164,420...85,181,444 		JBrowse link
G Emx2 empty spiracles homeobox 2 IAGP MGI PMID:15917450 PMID:20667915 NCBI chr19:59,447,122...59,453,789
Ensembl chr19:59,446,804...59,453,789 		JBrowse link
G Fbxw7 F-box and WD-40 domain protein 7 IAGP MGI PMID:20935640 NCBI chr 3:84,721,901...84,886,505
Ensembl chr 3:84,722,575...84,886,505 		JBrowse link
G Fezf1 Fez family zinc finger 1 IAGP MGI PMID:16540508 NCBI chr 6:23,245,043...23,250,942
Ensembl chr 6:23,245,043...23,248,361 		JBrowse link
G Fkbp8 FK506 binding protein 8 IAGP MGI PMID:18459960 NCBI chr 8:70,980,371...70,987,978
Ensembl chr 8:70,980,374...70,987,978 		JBrowse link
G Foxg1 forkhead box G1 IAGP MGI PMID:7605629 PMID:28483978 NCBI chr12:49,429,666...49,433,650
Ensembl chr12:49,429,443...49,433,644 		JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 IAGP MGI PMID:16239343 PMID:28483978 NCBI chr10:116,905,324...116,986,311
Ensembl chr10:116,905,332...116,984,439 		JBrowse link
G Frs3 fibroblast growth factor receptor substrate 3 IAGP MGI PMID:28483978 NCBI chr17:47,998,532...48,015,211
Ensembl chr17:47,999,955...48,015,211 		JBrowse link
G Gatad2b GATA zinc finger domain containing 2B IAGP MGI PMID:38238293 NCBI chr 3:90,200,488...90,270,712
Ensembl chr 3:90,200,485...90,270,714 		JBrowse link
G Glra2 glycine receptor, alpha 2 subunit IAGP MGI PMID:23954789 NCBI chr  X:163,912,013...164,110,863
Ensembl chr  X:163,912,013...164,110,389 		JBrowse link
G Gnl3 guanine nucleotide binding protein nucleolar 3 IAGP MGI PMID:23798389 NCBI chr14:30,734,390...30,741,088
Ensembl chr14:30,734,390...30,741,109 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:29033352 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,055,336 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 IAGP MGI PMID:15496443 NCBI chr16:29,883,259...29,886,614
Ensembl chr16:29,883,202...29,886,614 		JBrowse link
G Hes5 hes family bHLH transcription factor 5 IAGP MGI PMID:15496443 NCBI chr 4:155,042,358...155,046,829
Ensembl chr 4:155,045,380...155,046,828 		JBrowse link
G Htt huntingtin IAGP MGI PMID:9398841 NCBI chr 5:34,919,084...35,069,878
Ensembl chr 5:34,919,084...35,069,878 		JBrowse link
G Id1 inhibitor of DNA binding 1, HLH protein IAGP MGI PMID:10537105 NCBI chr 2:152,578,171...152,579,330
Ensembl chr 2:152,578,171...152,579,330 		JBrowse link
G Id3 inhibitor of DNA binding 3 IAGP MGI PMID:10537105 NCBI chr 4:135,871,133...135,872,703
Ensembl chr 4:135,870,808...135,873,066 		JBrowse link
G Itgav integrin alpha V IAGP MGI PMID:15576410 NCBI chr 2:83,554,796...83,637,261
Ensembl chr 2:83,554,741...83,637,260 		JBrowse link
G Itgb8 integrin beta 8 IAGP MGI PMID:12050137 NCBI chr12:119,121,757...119,202,891
Ensembl chr12:119,121,757...119,202,537 		JBrowse link
G Kat8 K(lysine) acetyltransferase 8 IAGP MGI PMID:32541879 NCBI chr 7:127,511,689...127,525,010
Ensembl chr 7:127,511,688...127,525,009 		JBrowse link
G Mir592 microRNA 592 IAGP MGI PMID:35365601 NCBI chr 6:27,936,654...27,936,749
Ensembl chr 6:27,936,654...27,936,749 		JBrowse link
G Mir9-2 microRNA 9-2 IAGP MGI PMID:21368052 NCBI chr13:83,886,933...83,887,004
Ensembl chr13:83,886,933...83,887,004 		JBrowse link
G Mir9-3 microRNA 9-3 IAGP MGI PMID:21368052 NCBI chr 7:79,155,012...79,155,101
Ensembl chr 7:79,155,012...79,155,101 		JBrowse link
G Otx1 orthodenticle homeobox 1 IAGP MGI PMID:20816794 NCBI chr11:21,944,764...21,954,044
Ensembl chr11:21,944,764...21,952,897 		JBrowse link
G Otx2 orthodenticle homeobox 2 IAGP MGI PMID:20816794 NCBI chr14:48,894,238...48,905,101
Ensembl chr14:48,895,134...48,911,276 		JBrowse link
G Pantr2 POU domain, class 3, transcription factor 3 adjacent noncoding transcript 2 IAGP MGI PMID:24381249 NCBI chr 1:42,746,221...42,752,614
Ensembl chr 1:42,687,360...42,752,940 		JBrowse link
G Patz1 POZ (BTB) and AT hook containing zinc finger 1 IAGP MGI PMID:22886576 NCBI chr11:3,239,131...3,259,083
Ensembl chr11:3,238,874...3,259,083 		JBrowse link
G Pax6 paired box 6 IAGP MGI PMID:15548580 PMID:15917450 NCBI chr 2:105,499,241...105,528,755
Ensembl chr 2:105,499,245...105,527,709 		JBrowse link
G Pdss2 prenyl (solanesyl) diphosphate synthase, subunit 2 IAGP MGI PMID:21871565 NCBI chr10:43,095,396...43,340,878
Ensembl chr10:43,097,482...43,340,878 		JBrowse link
G Phgdh 3-phosphoglycerate dehydrogenase IAGP MGI PMID:14645240 NCBI chr 3:98,220,487...98,247,285
Ensembl chr 3:98,220,486...98,247,306 		JBrowse link
G Pikfyve phosphoinositide kinase, FYVE type zinc finger containing IAGP MGI PMID:23047693 NCBI chr 1:65,225,796...65,317,855
Ensembl chr 1:65,225,842...65,317,854 		JBrowse link
G Pou3f2 POU domain, class 3, transcription factor 2 IAGP MGI PMID:12130536 NCBI chr 4:22,482,095...22,488,366
Ensembl chr 4:22,482,780...22,488,366 		JBrowse link
G Pou3f3 POU domain, class 3, transcription factor 3 IAGP MGI PMID:12130536 NCBI chr 1:42,734,928...42,739,370
Ensembl chr 1:42,734,085...42,742,336 		JBrowse link
G Prmt5 protein arginine N-methyltransferase 5 IAGP MGI PMID:24013503 NCBI chr14:54,744,639...54,754,927
Ensembl chr14:54,744,644...54,754,982 		JBrowse link
G Ranbp1 RAN binding protein 1 IAGP MGI PMID:25452572 NCBI chr16:18,057,843...18,066,558
Ensembl chr16:18,057,648...18,066,596 		JBrowse link
G Robo1 roundabout guidance receptor 1 IAGP MGI PMID:18054781 NCBI chr16:71,824,406...72,844,379
Ensembl chr16:72,105,194...72,842,983 		JBrowse link
G Shh sonic hedgehog IAGP MGI PMID:17468181 PMID:19287388 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
G Slit1 slit guidance ligand 1 IAGP MGI PMID:18054781 NCBI chr19:41,586,263...41,735,714
Ensembl chr19:41,588,696...41,732,104 		JBrowse link
G Slit2 slit guidance ligand 2 IAGP MGI PMID:18054781 NCBI chr 5:48,138,633...48,465,077
Ensembl chr 5:48,140,480...48,465,075 		JBrowse link
G Sox11 SRY (sex determining region Y)-box 11 IAGP MGI PMID:23483698 NCBI chr12:27,384,267...27,392,717
Ensembl chr12:27,384,263...27,392,573 		JBrowse link
G Sp2 Sp2 transcription factor IAGP MGI PMID:23293287 NCBI chr11:96,844,158...96,873,785
Ensembl chr11:96,844,167...96,873,785 		JBrowse link
G Sptan1 spectrin alpha, non-erythrocytic 1 IAGP MGI PMID:22159418 NCBI chr 2:29,855,572...29,921,463
Ensembl chr 2:29,855,572...29,921,463 		JBrowse link
G Srrm4 serine/arginine repetitive matrix 4 IAGP MGI PMID:25838543 NCBI chr 5:116,577,331...116,729,882
Ensembl chr 5:116,577,334...116,729,876 		JBrowse link
G Top2b topoisomerase (DNA) II beta IAGP MGI PMID:12773624 NCBI chr14:6,038,976...6,104,585
Ensembl chr14:6,034,301...6,104,584 		JBrowse link
G Trp53bp2 transformation related protein 53 binding protein 2 IAGP MGI PMID:20619750 NCBI chr 1:182,236,737...182,289,997
Ensembl chr 1:182,236,737...182,289,997 		JBrowse link
G Wdfy3 WD repeat and FYVE domain containing 3 IAGP MGI PMID:25198012 NCBI chr 5:101,980,819...102,220,081
Ensembl chr 5:101,980,822...102,217,787 		JBrowse link
abnormal lateral ganglionic eminence morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 IAGP MGI PMID:19208224 NCBI chr10:87,326,681...87,329,522
Ensembl chr10:87,326,681...87,329,522 		JBrowse link
G Bmp4 bone morphogenetic protein 4 IAGP MGI PMID:14681194 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126 		JBrowse link
G Boc BOC cell adhesion associated, oncogene regulated IAGP MGI PMID:21183473 NCBI chr16:44,305,408...44,379,233
Ensembl chr16:44,305,412...44,379,260 		JBrowse link
G Cdon cell adhesion molecule-related/down-regulated by oncogenes IAGP MGI PMID:21183473 NCBI chr 9:35,332,836...35,418,948
Ensembl chr 9:35,332,424...35,418,948 		JBrowse link
G Ebf1 early B cell factor 1 IAGP MGI PMID:10556054 NCBI chr11:44,502,738...44,898,923
Ensembl chr11:44,508,144...44,898,918 		JBrowse link
G Edil3 EGF-like repeats and discoidin I-like domains 3 IAGP MGI PMID:17468181 PMID:23824717 NCBI chr13:88,969,591...89,471,344
Ensembl chr13:88,969,591...89,471,342 		JBrowse link
G Emx1 empty spiracles homeobox 1 IAGP MGI PMID:19709628 NCBI chr 6:85,164,913...85,181,445
Ensembl chr 6:85,164,420...85,181,444 		JBrowse link
G Emx2 empty spiracles homeobox 2 IAGP MGI PMID:11493561 NCBI chr19:59,447,122...59,453,789
Ensembl chr19:59,446,804...59,453,789 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 IAGP MGI PMID:28483978 NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079 		JBrowse link
G Foxg1 forkhead box G1 IAGP MGI PMID:19709628 PMID:28483978 NCBI chr12:49,429,666...49,433,650
Ensembl chr12:49,429,443...49,433,644 		JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 IAGP MGI PMID:28483978 NCBI chr10:116,905,324...116,986,311
Ensembl chr10:116,905,332...116,984,439 		JBrowse link
G Frs3 fibroblast growth factor receptor substrate 3 IAGP MGI PMID:28483978 NCBI chr17:47,998,532...48,015,211
Ensembl chr17:47,999,955...48,015,211 		JBrowse link
G Gsx2 GS homeobox 2 IAGP MGI PMID:9398437 PMID:19208224 PMID:19709628 NCBI chr 5:75,236,262...75,238,554
Ensembl chr 5:75,236,262...75,238,554 		JBrowse link
G Htt huntingtin IAGP MGI PMID:27623015 NCBI chr 5:34,919,084...35,069,878
Ensembl chr 5:34,919,084...35,069,878 		JBrowse link
G Id4 inhibitor of DNA binding 4 IAGP MGI PMID:15882580 NCBI chr13:48,414,592...48,419,504
Ensembl chr13:48,414,704...48,419,502 		JBrowse link
G Ift88 intraflagellar transport 88 IAGP MGI PMID:19036983 NCBI chr14:57,661,519...57,755,393
Ensembl chr14:57,661,519...57,755,393 		JBrowse link
G Insc INSC spindle orientation adaptor protein IAGP MGI PMID:22017987 NCBI chr 7:114,342,931...114,449,615
Ensembl chr 7:114,342,929...114,449,618 		JBrowse link
G Mir9-2 microRNA 9-2 IAGP MGI PMID:21368052 NCBI chr13:83,886,933...83,887,004
Ensembl chr13:83,886,933...83,887,004 		JBrowse link
G Mir9-3 microRNA 9-3 IAGP MGI PMID:21368052 NCBI chr 7:79,155,012...79,155,101
Ensembl chr 7:79,155,012...79,155,101 		JBrowse link
G Nosip nitric oxide synthase interacting protein IAGP MGI PMID:25546391 NCBI chr 7:44,711,840...44,727,927
Ensembl chr 7:44,711,853...44,727,634 		JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 IAGP MGI PMID:12571103 NCBI chr10:42,437,959...42,459,721
Ensembl chr10:42,437,959...42,459,628 		JBrowse link
G Otx2 orthodenticle homeobox 2 IAGP MGI PMID:11493561 NCBI chr14:48,894,238...48,905,101
Ensembl chr14:48,895,134...48,911,276 		JBrowse link
G Prdm15 PR domain containing 15 IAGP MGI PMID:31950080 NCBI chr16:97,592,720...97,653,076
Ensembl chr16:97,592,667...97,653,050 		JBrowse link
G Psen1 presenilin 1 IAGP MGI PMID:9160754 PMID:25741723 NCBI chr12:83,734,926...83,781,869
Ensembl chr12:83,734,926...83,781,973 		JBrowse link
G Shh sonic hedgehog IAGP MGI PMID:17468181 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
G Twsg1 twisted gastrulation BMP signaling modulator 1 IAGP MGI PMID:14681194 NCBI chr17:66,230,060...66,258,198
Ensembl chr17:66,228,967...66,258,221 		JBrowse link
G Ubr4 ubiquitin protein ligase E3 component n-recognin 4 IAGP MGI PMID:23824717 NCBI chr 4:139,107,970...139,216,844
Ensembl chr 4:139,079,920...139,216,899 		JBrowse link
G Vax1 ventral anterior homeobox 1 IAGP MGI PMID:15590934 NCBI chr19:59,152,912...59,158,829
Ensembl chr19:59,154,619...59,158,488 		JBrowse link
G Wdfy3 WD repeat and FYVE domain containing 3 IAGP MGI PMID:25198012 NCBI chr 5:101,980,819...102,220,081
Ensembl chr 5:101,980,822...102,217,787 		JBrowse link
abnormal medial ganglionic eminence morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Boc BOC cell adhesion associated, oncogene regulated IAGP MGI PMID:21183473 NCBI chr16:44,305,408...44,379,233
Ensembl chr16:44,305,412...44,379,260 		JBrowse link
G Cdon cell adhesion molecule-related/down-regulated by oncogenes IAGP MGI PMID:21183473 NCBI chr 9:35,332,836...35,418,948
Ensembl chr 9:35,332,424...35,418,948 		JBrowse link
G Edil3 EGF-like repeats and discoidin I-like domains 3 IAGP MGI PMID:17468181 PMID:23824717 NCBI chr13:88,969,591...89,471,344
Ensembl chr13:88,969,591...89,471,342 		JBrowse link
G Emx2 empty spiracles homeobox 2 IAGP MGI PMID:11493561 NCBI chr19:59,447,122...59,453,789
Ensembl chr19:59,446,804...59,453,789 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 IAGP MGI PMID:28483978 NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079 		JBrowse link
G Foxg1 forkhead box G1 IAGP MGI PMID:18329011 PMID:28483978 NCBI chr12:49,429,666...49,433,650
Ensembl chr12:49,429,443...49,433,644 		JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 IAGP MGI PMID:28483978 NCBI chr10:116,905,324...116,986,311
Ensembl chr10:116,905,332...116,984,439 		JBrowse link
G Frs3 fibroblast growth factor receptor substrate 3 IAGP MGI PMID:28483978 NCBI chr17:47,998,532...48,015,211
Ensembl chr17:47,999,955...48,015,211 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:18329011 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,055,336 		JBrowse link
G Hhex hematopoietically expressed homeobox IAGP MGI PMID:10804184 NCBI chr19:37,423,289...37,429,179
Ensembl chr19:37,423,258...37,429,179 		JBrowse link
G Id4 inhibitor of DNA binding 4 IAGP MGI PMID:15882580 NCBI chr13:48,414,592...48,419,504
Ensembl chr13:48,414,704...48,419,502 		JBrowse link
G Ift88 intraflagellar transport 88 IAGP MGI PMID:19036983 NCBI chr14:57,661,519...57,755,393
Ensembl chr14:57,661,519...57,755,393 		JBrowse link
G Nosip nitric oxide synthase interacting protein IAGP MGI PMID:25546391 NCBI chr 7:44,711,840...44,727,927
Ensembl chr 7:44,711,853...44,727,634 		JBrowse link
G Otx2 orthodenticle homeobox 2 IAGP MGI PMID:11493561 NCBI chr14:48,894,238...48,905,101
Ensembl chr14:48,895,134...48,911,276 		JBrowse link
G Prdm15 PR domain containing 15 IAGP MGI PMID:31950080 NCBI chr16:97,592,720...97,653,076
Ensembl chr16:97,592,667...97,653,050 		JBrowse link
G Shh sonic hedgehog IAGP MGI PMID:16221724 PMID:17468181 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
G Ubr4 ubiquitin protein ligase E3 component n-recognin 4 IAGP MGI PMID:23824717 NCBI chr 4:139,107,970...139,216,844
Ensembl chr 4:139,079,920...139,216,899 		JBrowse link
G Wdfy3 WD repeat and FYVE domain containing 3 IAGP MGI PMID:25198012 NCBI chr 5:101,980,819...102,220,081
Ensembl chr 5:101,980,822...102,217,787 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 17097
    nervous system phenotype 4654
      abnormal nervous system morphology 3677
        abnormal nervous system development 1586
          abnormal embryonic/fetal subventricular zone morphology 75
            abnormal caudal ganglionic eminence morphology 0
            abnormal lateral ganglionic eminence morphology 29
            abnormal medial ganglionic eminence morphology 18
paths to the root