MAMMALIAN PHENOTYPE - ANNOTATIONS
The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term: abnormal ear development
Accession: MP:0003938
browse the term
Definition: developmental anomaly of any of the structures involved in the ear or vestibular system
Synonyms: broad_synonym: Abnormal ear morphology
xref: HP:0031703
G
Bmp4
bone morphogenetic protein 4
IAGP
MGI
PMID:20233579
NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126
G
Chd7
chromodomain helicase DNA binding protein 7
IAGP
MGI
PMID:19855134 PMID:20736290
NCBI chr 4:8,690,345...8,868,449
Ensembl chr 4:8,690,406...8,867,659
G
Chrd
chordin
IAGP
MGI
PMID:10688202
NCBI chr16:20,551,528...20,561,132
Ensembl chr16:20,551,877...20,561,134
G
Fgf10
fibroblast growth factor 10
IAGP
MGI
PMID:14623822
NCBI chr13:118,851,199...118,928,651
Ensembl chr13:118,806,327...118,928,651
G
Fgf3
fibroblast growth factor 3
IAGP
MGI
PMID:14623822
NCBI chr 7:144,392,349...144,397,085
Ensembl chr 7:144,391,820...144,398,173
G
Fgfr2
fibroblast growth factor receptor 2
IAGP
MGI
PMID:20503384
NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079
G
Foxg1
forkhead box G1
IAGP
MGI
PMID:20736290
NCBI chr12:49,429,666...49,433,650
Ensembl chr12:49,429,443...49,433,644
G
Hmx2
H6 homeobox 2
IAGP
MGI
PMID:11748138
NCBI chr 7:131,150,486...131,159,743
Ensembl chr 7:131,150,502...131,159,743
G
Kdf1
keratinocyte differentiation factor 1
IAGP
MGI
PMID:24075906
NCBI chr 4:133,246,274...133,258,101
Ensembl chr 4:133,246,274...133,258,101
G
Lmo4
LIM domain only 4
IAGP
MGI
PMID:19913004
NCBI chr 3:143,894,291...143,911,016
Ensembl chr 3:143,894,291...143,910,981
G
Lmx1a
LIM homeobox transcription factor 1 alpha
IEA
MGI
NCBI chr 1:167,515,864...167,676,310
Ensembl chr 1:167,516,806...167,676,310
G
Lrig3
leucine-rich repeats and immunoglobulin-like domains 3
IAGP
MGI
PMID:19004851
NCBI chr10:125,802,088...125,851,228
Ensembl chr10:125,802,037...125,851,228
G
Nog
noggin
IAGP
MGI
PMID:9585504
NCBI chr11:89,191,464...89,193,385
Ensembl chr11:89,191,464...89,193,158
G
Rnd3
Rho family GTPase 3
IAGP
MGI
PMID:21552537
NCBI chr 2:51,020,451...51,039,123
Ensembl chr 2:51,020,450...51,039,123
G
Shank3
SH3 and multiple ankyrin repeat domains 3
IAGP
MGI
PMID:27161151
NCBI chr15:89,376,929...89,444,464
Ensembl chr15:89,383,826...89,444,464
G
Tbx1
T-box 1
IAGP
MGI
PMID:19855134
NCBI chr16:18,399,729...18,409,412
Ensembl chr16:18,399,729...18,409,421
G
Tbx10
T-box 10
IAGP
MGI
PMID:5297683
NCBI chr19:4,042,752...4,049,512
Ensembl chr19:4,042,752...4,049,512
G
Vangl2
VANGL planar cell polarity 2
IEA
MGI
NCBI chr 1:171,828,527...171,856,532
Ensembl chr 1:171,828,527...171,856,011
G
Fgf20
fibroblast growth factor 20
IAGP
MGI
PMID:22235191
NCBI chr 8:40,732,206...40,740,060
Ensembl chr 8:40,732,207...40,761,372
G
Fgfr1
fibroblast growth factor receptor 1
IAGP
MGI
PMID:12194867
NCBI chr 8:26,008,808...26,067,819
Ensembl chr 8:26,003,670...26,065,734
G
Foxg1
forkhead box G1
IAGP
MGI
PMID:12194867
NCBI chr12:49,429,666...49,433,650
Ensembl chr12:49,429,443...49,433,644
G
Gfi1
growth factor independent 1 transcription repressor
IAGP
MGI
PMID:12441305
NCBI chr 5:107,864,521...107,873,671
Ensembl chr 5:107,864,523...107,873,902
G
Igf1r
insulin-like growth factor I receptor
IAGP
MGI
PMID:22159122
NCBI chr 7:67,601,486...67,883,416
Ensembl chr 7:67,602,575...67,883,416
G
Myo6
myosin VI
IAGP
MGI
PMID:10900098
NCBI chr 9:80,072,262...80,219,011
Ensembl chr 9:80,072,313...80,219,011
G
Nr2f1
nuclear receptor subfamily 2, group F, member 1
IAGP
MGI
PMID:16914494
NCBI chr13:78,337,090...78,346,954
Ensembl chr13:78,337,092...78,347,876
G
Pou4f3
POU domain, class 4, transcription factor 3
IAGP
MGI
PMID:8637595 PMID:12585968
NCBI chr18:42,527,662...42,529,158
Ensembl chr18:42,527,604...42,530,314
G
Srrm4
serine/arginine repetitive matrix 4
IEA
MGI
NCBI chr 5:116,577,331...116,729,882
Ensembl chr 5:116,577,334...116,729,876
G
Triobp
TRIO and F-actin binding protein
IAGP
MGI
PMID:20510926
NCBI chr15:78,831,924...78,890,069
Ensembl chr15:78,831,924...78,890,069
G
Abr
active BCR-related gene
IAGP
MGI
PMID:11921339
NCBI chr11:76,307,560...76,468,515
Ensembl chr11:76,307,560...76,514,384
G
Bcr
BCR activator of RhoGEF and GTPase
IAGP
MGI
PMID:11921339
NCBI chr10:74,896,384...75,020,753
Ensembl chr10:74,896,424...75,020,753
G
Cachd1
cache domain containing 1
IAGP
MGI
PMID:34388681
NCBI chr 4:100,633,870...100,861,741
Ensembl chr 4:100,633,872...100,886,417
G
Chrd
chordin
IAGP
MGI
PMID:10688202
NCBI chr16:20,551,528...20,561,132
Ensembl chr16:20,551,877...20,561,134
G
Gata3
GATA binding protein 3
IAGP
MGI
PMID:23666531
NCBI chr 2:9,861,889...9,894,845
Ensembl chr 2:9,861,889...9,894,845
G
Gli3
GLI-Kruppel family member GLI3
IAGP
MGI
PMID:6049666
NCBI chr13:15,638,308...15,904,611
Ensembl chr13:15,637,820...15,904,611
G
Hspg2
perlecan (heparan sulfate proteoglycan 2)
IAGP
MGI
PMID:10579729
NCBI chr 4:137,196,062...137,297,941
Ensembl chr 4:137,196,080...137,297,941
G
Lrig1
leucine-rich repeats and immunoglobulin-like domains 1
IAGP
MGI
PMID:24086156
NCBI chr 6:94,581,510...94,677,205
Ensembl chr 6:94,581,510...94,677,139
G
Lrig3
leucine-rich repeats and immunoglobulin-like domains 3
IAGP
MGI
PMID:24086156
NCBI chr10:125,802,088...125,851,228
Ensembl chr10:125,802,037...125,851,228
G
Pax2
paired box 2
IAGP
MGI
PMID:8943028
NCBI chr19:44,735,040...44,826,708
Ensembl chr19:44,735,057...44,826,310
G
Rubie
RNA upstream of Bmp4 expressed in inner ear
IAGP
MGI
PMID:22253730
NCBI chr14:46,805,788...46,813,308
Ensembl chr14:46,805,720...46,835,882
G
Foxg1
forkhead box G1
IAGP
MGI
PMID:16600992
NCBI chr12:49,429,666...49,433,650
Ensembl chr12:49,429,443...49,433,644
G
Hspg2
perlecan (heparan sulfate proteoglycan 2)
IAGP
MGI
PMID:10579729
NCBI chr 4:137,196,062...137,297,941
Ensembl chr 4:137,196,080...137,297,941
G
Lmna
lamin A
IAGP
MGI
PMID:22819531
NCBI chr 3:88,388,455...88,413,842
Ensembl chr 3:88,387,454...88,417,263
G
Tbx1
T-box 1
IAGP
MGI
PMID:16600992
NCBI chr16:18,399,729...18,409,412
Ensembl chr16:18,399,729...18,409,421
G
Mafb
MAF bZIP transcription factor B
IAGP
MGI
PMID:14207033
NCBI chr 2:160,205,597...160,208,985
Ensembl chr 2:160,205,623...160,208,985
G
Folr1
folate receptor alpha
IAGP
MGI
PMID:10508523
NCBI chr 7:101,507,551...101,519,974
Ensembl chr 7:101,507,538...101,519,995
G
Vangl2
VANGL planar cell polarity 2
IAGP
MGI
PMID:6650116
NCBI chr 1:171,828,527...171,856,532
Ensembl chr 1:171,828,527...171,856,011
G
Foxi3
forkhead box I3
IAGP
MGI
PMID:26550799
NCBI chr 6:70,933,590...70,938,050
Ensembl chr 6:70,933,515...70,938,050
G
Apaf1
apoptotic peptidase activating factor 1
IAGP
MGI
PMID:10656767
NCBI chr10:90,825,173...90,918,688
Ensembl chr10:90,825,173...90,918,632
G
Chd7
chromodomain helicase DNA binding protein 7
IAGP
MGI
PMID:17334657
NCBI chr 4:8,690,345...8,868,449
Ensembl chr 4:8,690,406...8,867,659
G
Csk
c-src tyrosine kinase
IAGP
MGI
PMID:8513497
NCBI chr 9:57,533,929...57,560,758
Ensembl chr 9:57,533,929...57,560,914
G
Csnk2a1
casein kinase 2, alpha 1 polypeptide
IAGP
MGI
PMID:17954558
NCBI chr 2:152,068,468...152,123,772
Ensembl chr 2:152,068,759...152,123,772
G
Eya1
EYA transcriptional coactivator and phosphatase 1
IAGP
MGI
PMID:10471511 PMID:16916509
NCBI chr 1:14,239,177...14,381,259
Ensembl chr 1:14,239,178...14,380,459
G
Fbln1
fibulin 1
IAGP
MGI
PMID:18538758
NCBI chr15:85,090,150...85,170,495
Ensembl chr15:85,090,150...85,170,736
G
Fgf10
fibroblast growth factor 10
IAGP
MGI
PMID:12810586
NCBI chr13:118,851,199...118,928,651
Ensembl chr13:118,806,327...118,928,651
G
Fgf3
fibroblast growth factor 3
IAGP
MGI
PMID:12810586
NCBI chr 7:144,392,349...144,397,085
Ensembl chr 7:144,391,820...144,398,173
G
Fgfr2
fibroblast growth factor receptor 2
IAGP
MGI
PMID:11180951
NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079
G
Foxc2
forkhead box C2
IAGP
MGI
PMID:9409679
NCBI chr 8:121,842,910...121,845,634
Ensembl chr 8:121,842,910...121,845,634
G
Gata3
GATA binding protein 3
IAGP
MGI
PMID:11135239
NCBI chr 2:9,861,889...9,894,845
Ensembl chr 2:9,861,889...9,894,845
G
Gli3
GLI-Kruppel family member GLI3
IAGP
MGI
PMID:6049666
NCBI chr13:15,638,308...15,904,611
Ensembl chr13:15,637,820...15,904,611
G
Grb2
growth factor receptor bound protein 2
IAGP
MGI
PMID:11369229
NCBI chr11:115,534,871...115,599,423
Ensembl chr11:115,534,871...115,599,423
G
Hoxa1
homeobox A1
IAGP
MGI
PMID:1346922 PMID:21784065
NCBI chr 6:52,132,573...52,135,299
Ensembl chr 6:52,132,570...52,135,297
G
Lmx1a
LIM homeobox transcription factor 1 alpha
IAGP
MGI
PMID:23226461
NCBI chr 1:167,515,864...167,676,310
Ensembl chr 1:167,516,806...167,676,310
G
Mafb
MAF bZIP transcription factor B
IAGP
MGI
PMID:4758758 PMID:14207033
NCBI chr 2:160,205,597...160,208,985
Ensembl chr 2:160,205,623...160,208,985
G
Pax3
paired box 3
IAGP
MGI
PMID:5912439
NCBI chr 1:78,077,904...78,173,773
Ensembl chr 1:78,077,904...78,173,771
G
Rdh10
retinol dehydrogenase 10 (all-trans)
IAGP
MGI
PMID:21305688
NCBI chr 1:16,176,106...16,202,774
Ensembl chr 1:16,175,998...16,203,958
G
Rxra
retinoid X receptor alpha
IAGP
MGI
PMID:19255444
NCBI chr 2:27,566,457...27,653,331
Ensembl chr 2:27,566,452...27,652,969
G
Rxrb
retinoid X receptor beta
IAGP
MGI
PMID:19255444
NCBI chr17:34,250,786...34,257,377
Ensembl chr17:34,250,786...34,257,373
G
Shh
sonic hedgehog
IAGP
MGI
PMID:12231626
NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254
G
Six1
sine oculis-related homeobox 1
IAGP
MGI
PMID:14695375 PMID:19389353
NCBI chr12:73,088,601...73,093,486
Ensembl chr12:73,086,789...73,100,661
G
Smo
smoothened, frizzled class receptor
IAGP
MGI
PMID:19854269
NCBI chr 6:29,735,480...29,761,359
Ensembl chr 6:29,735,502...29,761,364
G
Vangl2
VANGL planar cell polarity 2
IAGP
MGI
PMID:11401449
NCBI chr 1:171,828,527...171,856,532
Ensembl chr 1:171,828,527...171,856,011
G
Aldh1a2
aldehyde dehydrogenase family 1, subfamily A2
IAGP
MGI
PMID:22319578
NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525
G
Alg10b
ALG10 alpha-1,2-glucosyltransferase
IEA
MGI
NCBI chr15:90,108,506...90,117,674
Ensembl chr15:90,108,514...90,117,674
G
Hoxa1
homeobox A1
IAGP
MGI
PMID:8102800
NCBI chr 6:52,132,573...52,135,299
Ensembl chr 6:52,132,570...52,135,297
G
Krit1
KRIT1, ankyrin repeat containing
IEA
MGI
NCBI chr 5:3,853,156...3,894,515
Ensembl chr 5:3,853,184...3,895,564
G
Pcnp
PEST proteolytic signal containing nuclear protein
IEA
MGI
NCBI chr16:55,835,870...55,851,590
Ensembl chr16:55,827,608...55,850,102
G
Pigq
phosphatidylinositol glycan anchor biosynthesis, class Q
IEA
MGI
NCBI chr17:26,145,398...26,161,855
Ensembl chr17:26,145,395...26,163,910
G
Rdh10
retinol dehydrogenase 10 (all-trans)
IAGP
MGI
PMID:17473173 PMID:21930923 PMID:22319578
NCBI chr 1:16,176,106...16,202,774
Ensembl chr 1:16,175,998...16,203,958
G
Tbx20
T-box 20
IEA
MGI
NCBI chr 9:24,632,108...24,685,580
Ensembl chr 9:24,629,434...24,685,599
G
Uqcc3
ubiquinol-cytochrome c reductase complex assembly factor 3
IEA
MGI
NCBI chr19:8,857,378...8,858,297
Ensembl chr19:8,857,378...8,858,287
G
Chrd
chordin
IAGP
MGI
PMID:10688202 PMID:19247433
NCBI chr16:20,551,528...20,561,132
Ensembl chr16:20,551,877...20,561,134
G
Pou4f3
POU domain, class 4, transcription factor 3
IAGP
MGI
PMID:9735355 PMID:12585968
NCBI chr18:42,527,662...42,529,158
Ensembl chr18:42,527,604...42,530,314
G
Ovol2
ovo like zinc finger 2
IAGP
MGI
PMID:16423343
NCBI chr 2:144,147,095...144,174,000
Ensembl chr 2:144,147,095...144,174,066
G
Fgf10
fibroblast growth factor 10
IAGP
MGI
PMID:12810586 PMID:20171206
NCBI chr13:118,851,199...118,928,651
Ensembl chr13:118,806,327...118,928,651
G
Fgf3
fibroblast growth factor 3
IAGP
MGI
PMID:12810586 PMID:20171206
NCBI chr 7:144,392,349...144,397,085
Ensembl chr 7:144,391,820...144,398,173
G
Hesx1
homeobox gene expressed in ES cells
IAGP
MGI
PMID:9620767
NCBI chr14:26,716,322...26,724,286
Ensembl chr14:26,716,373...26,724,286
G
Nf1
neurofibromin 1
IAGP
MGI
PMID:7477259
NCBI chr11:79,223,541...79,472,435
Ensembl chr11:79,230,519...79,472,438
G
Rasa1
RAS p21 protein activator 1
IAGP
MGI
PMID:7477259
NCBI chr13:85,362,893...85,437,487
Ensembl chr13:85,362,899...85,437,249
G
Eya1
EYA transcriptional coactivator and phosphatase 1
IAGP
MGI
PMID:16916509
NCBI chr 1:14,239,177...14,381,259
Ensembl chr 1:14,239,178...14,380,459
G
Six1
sine oculis-related homeobox 1
IAGP
MGI
PMID:12834866
NCBI chr12:73,088,601...73,093,486
Ensembl chr12:73,086,789...73,100,661
G
Duox2
dual oxidase 2
IAGP
MGI
PMID:17440044
NCBI chr 2:122,109,727...122,129,221
Ensembl chr 2:122,109,728...122,128,930
G
Gata3
GATA binding protein 3
IAGP
MGI
PMID:11135239 PMID:15499560
NCBI chr 2:9,861,889...9,894,845
Ensembl chr 2:9,861,889...9,894,845
G
Igf1
insulin-like growth factor 1
IAGP
MGI
PMID:11567053
NCBI chr10:87,694,127...87,772,909
Ensembl chr10:87,694,127...87,772,904
G
Pax8
paired box 8
IAGP
MGI
PMID:14981357
NCBI chr 2:24,310,563...24,365,611
Ensembl chr 2:24,310,572...24,365,611
G
Thra
thyroid hormone receptor alpha
IAGP
MGI
PMID:11739587
NCBI chr11:98,631,539...98,659,832
Ensembl chr11:98,631,464...98,659,832
G
Thrb
thyroid hormone receptor beta
IAGP
MGI
PMID:8673137 PMID:11739587
NCBI chr14:4,429,599...4,810,538
Ensembl chr14:4,431,611...4,809,435
G
Tpo
thyroid peroxidase
IAGP
MGI
PMID:24297261
NCBI chr12:30,104,658...30,182,983
Ensembl chr12:30,104,658...30,182,623
G
Eya1
EYA transcriptional coactivator and phosphatase 1
IAGP
MGI
PMID:10471511 PMID:16916509
NCBI chr 1:14,239,177...14,381,259
Ensembl chr 1:14,239,178...14,380,459
G
Aldh1a2
aldehyde dehydrogenase family 1, subfamily A2
IAGP
MGI
PMID:10192400
NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525
G
Dlx5
distal-less homeobox 5
IAGP
MGI
PMID:12142028
NCBI chr 6:6,877,801...6,882,068
Ensembl chr 6:6,877,805...6,882,085
G
Foxg1
forkhead box G1
IAGP
MGI
PMID:16600992
NCBI chr12:49,429,666...49,433,650
Ensembl chr12:49,429,443...49,433,644
G
Tbx1
T-box 1
IAGP
MGI
PMID:15084464 PMID:16600992
NCBI chr16:18,399,729...18,409,412
Ensembl chr16:18,399,729...18,409,421
G
Aldh1a2
aldehyde dehydrogenase family 1, subfamily A2
IAGP
MGI
PMID:11959834 PMID:22319578
NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525
G
Chd7
chromodomain helicase DNA binding protein 7
IAGP
MGI
PMID:17334657
NCBI chr 4:8,690,345...8,868,449
Ensembl chr 4:8,690,406...8,867,659
G
Chrd
chordin
IAGP
MGI
PMID:12810603
NCBI chr16:20,551,528...20,561,132
Ensembl chr16:20,551,877...20,561,134
G
Eya1
EYA transcriptional coactivator and phosphatase 1
IAGP
MGI
PMID:16916509
NCBI chr 1:14,239,177...14,381,259
Ensembl chr 1:14,239,178...14,380,459
G
Fgf10
fibroblast growth factor 10
IAGP
MGI
PMID:12810586 PMID:14623822 PMID:20171206
NCBI chr13:118,851,199...118,928,651
Ensembl chr13:118,806,327...118,928,651
G
Fgf3
fibroblast growth factor 3
IAGP
MGI
PMID:12810586 PMID:14623822 PMID:20171206
NCBI chr 7:144,392,349...144,397,085
Ensembl chr 7:144,391,820...144,398,173
G
Fgfr2
fibroblast growth factor receptor 2
IAGP
MGI
PMID:9435295 PMID:10934262
NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079
G
Foxg1
forkhead box G1
IAGP
MGI
PMID:16600992
NCBI chr12:49,429,666...49,433,650
Ensembl chr12:49,429,443...49,433,644
G
Gata3
GATA binding protein 3
IAGP
MGI
PMID:11135239
NCBI chr 2:9,861,889...9,894,845
Ensembl chr 2:9,861,889...9,894,845
G
Gbx2
gastrulation brain homeobox 2
IAGP
MGI
PMID:9247335 PMID:15829521
NCBI chr 1:89,855,684...89,858,898
Ensembl chr 1:89,855,678...89,858,901
G
Hoxa1
homeobox A1
IAGP
MGI
PMID:1346922 PMID:11528388
NCBI chr 6:52,132,573...52,135,299
Ensembl chr 6:52,132,570...52,135,297
G
Lmo4
LIM domain only 4
IAGP
MGI
PMID:19913004
NCBI chr 3:143,894,291...143,911,016
Ensembl chr 3:143,894,291...143,910,981
G
Ptch1
patched 1
IAGP
MGI
PMID:21305688
NCBI chr13:63,656,142...63,721,274
Ensembl chr13:63,656,142...63,721,412
G
Rara
retinoic acid receptor, alpha
IAGP
MGI
PMID:7607067
NCBI chr11:98,818,626...98,865,768
Ensembl chr11:98,818,644...98,865,768
G
Rarg
retinoic acid receptor, gamma
IAGP
MGI
PMID:7607067
NCBI chr15:102,143,373...102,165,891
Ensembl chr15:102,143,373...102,165,952
G
Rdh10
retinol dehydrogenase 10 (all-trans)
IAGP
MGI
PMID:17473173 PMID:21930923 PMID:22319578
NCBI chr 1:16,176,106...16,202,774
Ensembl chr 1:16,175,998...16,203,958
G
Tbx1
T-box 1
IAGP
MGI
PMID:11242110 PMID:12913075 PMID:15652707 PMID:16600992
NCBI chr16:18,399,729...18,409,412
Ensembl chr16:18,399,729...18,409,421
G
Tcof1
treacle ribosome biogenesis factor 1
IAGP
MGI
PMID:10888597
NCBI chr18:60,946,827...60,982,055
Ensembl chr18:60,946,827...60,982,043
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all