Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term:decreased width of hypertrophic chondrocyte zone
go back to main search page
Accession:MP:0003409 term browser browse the term
Definition:decreased width of cartilage cell matrix layer
Synonyms:exact_synonym: reduced width of hypertrophic chondrocyte zone


show annotations for term's descendants           Sort by:
decreased width of hypertrophic chondrocyte zone term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor, type 1 IAGP MGI PMID:26896819 NCBI chr 2:58,336,450...58,456,840
Ensembl chr 2:58,278,656...58,457,169 		JBrowse link
G Adamts17 ADAM metallopeptidase with thrombospondin type 1 motif 17 IAGP MGI PMID:31201465 NCBI chr 7:66,487,387...66,802,373
Ensembl chr 7:66,489,483...66,802,919 		JBrowse link
G Adamtsl2 ADAMTS-like 2 IAGP MGI PMID:5713631 NCBI chr 2:26,969,348...26,998,993
Ensembl chr 2:26,969,391...26,998,993 		JBrowse link
G Col2a1 collagen, type II, alpha 1 IAGP MGI PMID:22028304 PMID:24475193 NCBI chr15:97,873,483...97,902,525
Ensembl chr15:97,873,483...97,902,576 		JBrowse link
G Creb3l2 cAMP responsive element binding protein 3-like 2 IAGP MGI PMID:19767744 NCBI chr 6:37,307,956...37,419,083
Ensembl chr 6:37,304,190...37,419,081 		JBrowse link
G Csgalnact1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 IAGP MGI PMID:20812917 NCBI chr 8:68,809,433...69,188,270
Ensembl chr 8:68,809,433...69,187,798 		JBrowse link
G Ctnna1 catenin alpha 1 IAGP MGI PMID:21924256 NCBI chr18:35,251,955...35,387,829
Ensembl chr18:35,251,912...35,387,832 		JBrowse link
G Dym dymeclin IAGP MGI PMID:18852472 NCBI chr18:75,151,772...75,420,037
Ensembl chr18:75,151,852...75,420,035 		JBrowse link
G Egr2 early growth response 2 IAGP MGI PMID:8565822 NCBI chr10:67,370,334...67,383,354
Ensembl chr10:67,371,305...67,378,018 		JBrowse link
G Evc EvC ciliary complex subunit 1 IAGP MGI PMID:17660199 NCBI chr 5:37,446,314...37,495,489
Ensembl chr 5:37,446,442...37,494,238 		JBrowse link
G Evc2 EvC ciliary complex subunit 2 IAGP MGI PMID:23026747 NCBI chr 5:37,495,801...37,582,399
Ensembl chr 5:37,495,843...37,582,399 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 IAGP MGI PMID:12135917 PMID:18242159 NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079 		JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 IAGP MGI PMID:9887329 PMID:10200283 PMID:10587515 PMID:11181569 PMID:22367969 More... NCBI chr 5:33,879,068...33,894,412
Ensembl chr 5:33,879,018...33,894,412 		JBrowse link
G Flnb filamin, beta IAGP MGI PMID:17510210 NCBI chr14:14,518,185...14,651,852
Ensembl chr14:14,518,185...14,651,816 		JBrowse link
G Fosl2 fos-like antigen 2 IAGP MGI PMID:15509771 NCBI chr 5:32,292,599...32,315,184
Ensembl chr 5:32,293,145...32,315,186 		JBrowse link
G Ghr growth hormone receptor IAGP MGI PMID:11133160 NCBI chr15:3,347,237...3,612,834
Ensembl chr15:3,347,242...3,612,974 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:12724423 PMID:19906844 PMID:20010698 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294 		JBrowse link
G Ift80 intraflagellar transport 80 IAGP MGI PMID:21227999 NCBI chr 3:68,799,832...68,911,939
Ensembl chr 3:68,799,832...68,911,892 		JBrowse link
G Igf1 insulin-like growth factor 1 IAGP MGI PMID:11133160 PMID:12235108 NCBI chr10:87,694,127...87,772,909
Ensembl chr10:87,694,127...87,772,904 		JBrowse link
G Igfals insulin-like growth factor binding protein, acid labile subunit IAGP MGI PMID:12235108 NCBI chr17:25,096,818...25,100,985
Ensembl chr17:25,084,971...25,100,984 		JBrowse link
G Ihh Indian hedgehog IAGP MGI PMID:10465785 NCBI chr 1:74,984,474...74,990,831
Ensembl chr 1:74,984,474...74,990,831 		JBrowse link
G Intu inturned planar cell polarity protein IAGP MGI PMID:25774014 NCBI chr 3:40,585,559...40,659,206
Ensembl chr 3:40,585,435...40,659,204 		JBrowse link
G Itga10 integrin, alpha 10 IAGP MGI PMID:15713743 NCBI chr 3:96,552,900...96,571,835
Ensembl chr 3:96,552,900...96,571,835 		JBrowse link
G Kdm6b KDM1 lysine (K)-specific demethylase 6B IAGP MGI PMID:25587042 NCBI chr11:69,289,334...69,311,188
Ensembl chr11:69,289,334...69,304,501 		JBrowse link
G Kl klotho IAGP MGI PMID:25860694 NCBI chr 5:150,876,072...150,917,282
Ensembl chr 5:150,876,072...150,917,282 		JBrowse link
G Lbr lamin B receptor IAGP MGI PMID:17403717 NCBI chr 1:181,642,880...181,669,933
Ensembl chr 1:181,642,900...181,670,611 		JBrowse link
G Lgals3 lectin, galactose binding, soluble 3 IAGP MGI PMID:11133164 NCBI chr14:47,611,317...47,623,624
Ensembl chr14:47,605,208...47,623,617 		JBrowse link
G Lrp5 low density lipoprotein receptor-related protein 5 IAGP MGI PMID:21924256 NCBI chr19:3,634,825...3,736,574
Ensembl chr19:3,634,828...3,736,564 		JBrowse link
G Lrp6 low density lipoprotein receptor-related protein 6 IAGP MGI PMID:21924256 NCBI chr 6:134,423,439...134,543,876
Ensembl chr 6:134,423,439...134,543,928 		JBrowse link
G Mapk14 mitogen-activated protein kinase 14 IAGP MGI PMID:23776632 NCBI chr17:28,910,316...28,967,379
Ensembl chr17:28,910,303...28,967,380 		JBrowse link
G Mbtps1 membrane-bound transcription factor peptidase, site 1 IAGP MGI PMID:29437042 NCBI chr 8:120,234,890...120,285,603
Ensembl chr 8:120,234,895...120,285,474 		JBrowse link
G Mex3c mex3 RNA binding family member C IAGP MGI PMID:22357625 NCBI chr18:73,705,710...73,725,649
Ensembl chr18:73,706,115...73,725,646 		JBrowse link
G Mgp matrix Gla protein IAGP MGI PMID:9052783 NCBI chr 6:136,849,433...136,852,821
Ensembl chr 6:136,849,433...136,852,821 		JBrowse link
G Nlrp3 NLR family, pyrin domain containing 3 IAGP MGI PMID:22558291 NCBI chr11:59,432,395...59,457,781
Ensembl chr11:59,432,394...59,457,782 		JBrowse link
G Nppc natriuretic peptide type C IAGP MGI PMID:11259675 PMID:22271248 NCBI chr 1:86,594,015...86,598,295
Ensembl chr 1:86,594,013...86,598,293 		JBrowse link
G Npr2 natriuretic peptide receptor 2 IAGP MGI PMID:5713631 PMID:15572448 NCBI chr 4:43,629,015...43,651,437
Ensembl chr 4:43,631,935...43,651,244 		JBrowse link
G Ntrk2 neurotrophic tyrosine kinase, receptor, type 2 IAGP MGI PMID:23776632 NCBI chr13:58,954,363...59,281,782
Ensembl chr13:58,954,383...59,281,784 		JBrowse link
G Papss2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 IAGP MGI PMID:67117 PMID:5713631 NCBI chr19:32,573,072...32,644,587
Ensembl chr19:32,573,190...32,644,587 		JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting IAGP MGI PMID:11689485 NCBI chr17:24,767,657...24,815,457
Ensembl chr17:24,768,808...24,815,482 		JBrowse link
G Prkar1a protein kinase, cAMP dependent regulatory, type I, alpha IAGP MGI PMID:27589370 NCBI chr11:109,539,849...109,560,489
Ensembl chr11:109,540,231...109,560,482 		JBrowse link
G Prkcd protein kinase C, delta IAGP MGI PMID:17199045 NCBI chr14:30,317,310...30,348,637
Ensembl chr14:30,317,311...30,348,167 		JBrowse link
G Prrx1 paired related homeobox 1 IAGP MGI PMID:9729491 PMID:18198333 NCBI chr 1:163,072,688...163,142,714
Ensembl chr 1:163,072,688...163,141,279 		JBrowse link
G Prrx2 paired related homeobox 2 IAGP MGI PMID:9729491 NCBI chr 2:30,735,076...30,771,263
Ensembl chr 2:30,724,984...30,771,263 		JBrowse link
G Rflna refilin A IAGP MGI PMID:24436304 NCBI chr 5:125,080,512...125,089,611
Ensembl chr 5:125,080,285...125,089,611 		JBrowse link
G Rflnb refilin B IAGP MGI PMID:24436304 NCBI chr11:75,910,020...75,918,608
Ensembl chr11:75,910,020...75,918,608 		JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 IAGP MGI PMID:14745966 NCBI chr13:53,263,353...53,440,160
Ensembl chr13:53,263,348...53,440,160 		JBrowse link
G Runx2 runt related transcription factor 2 IAGP MGI PMID:15183720 NCBI chr17:44,806,873...45,125,518
Ensembl chr17:44,806,874...45,125,684 		JBrowse link
G Sik3 SIK family kinase 3 IAGP MGI PMID:22318228 NCBI chr 9:45,924,099...46,135,492
Ensembl chr 9:45,924,118...46,135,492 		JBrowse link
G Slc10a7 solute carrier family 10 (sodium/bile acid cotransporter family), member 7 IAGP MGI PMID:30082715 NCBI chr 8:79,235,957...79,460,641
Ensembl chr 8:79,235,975...79,460,632 		JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3, neutral IAGP MGI PMID:15764706 NCBI chr 8:106,979,180...107,064,597
Ensembl chr 8:106,979,180...107,064,620 		JBrowse link
G Snap25 synaptosomal-associated protein 25 IAGP MGI PMID:19043548 NCBI chr 2:136,555,359...136,624,348
Ensembl chr 2:136,555,373...136,624,348 		JBrowse link
G Spred2 sprouty-related EVH1 domain containing 2 IAGP MGI PMID:15946934 NCBI chr11:19,874,442...19,974,026
Ensembl chr11:19,874,375...19,974,026 		JBrowse link
G Thra thyroid hormone receptor alpha IAGP MGI PMID:16051666 PMID:17327419 NCBI chr11:98,631,539...98,659,832
Ensembl chr11:98,631,464...98,659,832 		JBrowse link
G Tle5 TLE family member 5, transcriptional modulator IAGP MGI PMID:15183720 NCBI chr10:81,395,278...81,402,205
Ensembl chr10:81,395,322...81,402,196 		JBrowse link
G Tm7sf2 transmembrane 7 superfamily member 2 IAGP MGI PMID:17403717 NCBI chr19:6,112,851...6,117,880
Ensembl chr19:6,112,851...6,118,403 		JBrowse link
G Tmem163 transmembrane protein 163 IAGP MGI PMID:12724423 NCBI chr 1:127,418,079...127,605,758
Ensembl chr 1:127,414,283...127,607,285 		JBrowse link
G Tnni2 troponin I, skeletal, fast 2 IAGP MGI PMID:25340332 NCBI chr 7:141,995,553...141,998,147
Ensembl chr 7:141,995,545...141,998,147 		JBrowse link
G Twist2 twist basic helix-loop-helix transcription factor 2 IAGP MGI PMID:17199045 PMID:21924256 NCBI chr 1:91,729,183...91,775,756
Ensembl chr 1:91,729,183...91,775,750 		JBrowse link
G Twsg1 twisted gastrulation BMP signaling modulator 1 IAGP MGI PMID:12665593 NCBI chr17:66,230,060...66,258,198
Ensembl chr17:66,228,967...66,258,221 		JBrowse link
G Wnt7b wingless-type MMTV integration site family, member 7B IAGP MGI PMID:17199045 NCBI chr15:85,419,638...85,466,022
Ensembl chr15:85,419,638...85,466,674 		JBrowse link
G Xylt1 xylosyltransferase 1 IAGP MGI PMID:24161523 NCBI chr 7:116,980,214...117,266,853
Ensembl chr 7:116,980,214...117,272,803 		JBrowse link
G Zfp521 zinc finger protein 521 IAGP MGI PMID:20951345 NCBI chr18:13,820,070...14,105,812
Ensembl chr18:13,820,070...14,105,844 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 16962
    skeleton phenotype 3370
      abnormal skeleton morphology 3177
        abnormal cartilage morphology 478
          abnormal cartilage development 252
            abnormal long bone hypertrophic chondrocyte zone 161
              decreased width of hypertrophic chondrocyte zone 62
Path 2
Term Annotations click to browse term
  mammalian phenotype 16962
    skeleton phenotype 3370
      abnormal skeleton morphology 3177
        abnormal appendicular skeleton morphology 1076
          abnormal long bone morphology 845
            abnormal long bone epiphyseal plate morphology 232
              abnormal long bone hypertrophic chondrocyte zone 161
                decreased width of hypertrophic chondrocyte zone 62
paths to the root