Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Community Projects (beta) QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term:abnormal bile duct development
go back to main search page
Accession:MP:0002929 term browser browse the term
Definition:incomplete or aberrant differentiation of the channels that secrete bile from the liver to the gall bladder and intestines


show annotations for term's descendants           Sort by:
abnormal bile duct development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anks6 ankyrin repeat and sterile alpha motif domain containing 6 IAGP MGI PMID:32886109 NCBI chr 4:47,015,365...47,057,339
Ensembl chr 4:47,015,669...47,057,427 		JBrowse link
G Arl3 ADP-ribosylation factor-like 3 IAGP MGI PMID:16565502 NCBI chr19:46,519,548...46,561,621
Ensembl chr19:46,519,535...46,561,637 		JBrowse link
G B9d1 B9 protein domain 1 IAGP MGI PMID:21763481 NCBI chr11:61,395,970...61,403,757
Ensembl chr11:61,395,970...61,403,757 		JBrowse link
G Gpbar1 G protein-coupled bile acid receptor 1 IAGP MGI PMID:16724960 NCBI chr 1:74,316,269...74,318,868
Ensembl chr 1:74,317,709...74,318,783 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:19551907 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 IAGP MGI PMID:14702043 PMID:19619492 NCBI chr16:29,883,259...29,886,614
Ensembl chr16:29,883,202...29,886,614 		JBrowse link
G Hhex hematopoietically expressed homeobox IAGP MGI PMID:17580084 NCBI chr19:37,423,289...37,429,179
Ensembl chr19:37,423,258...37,429,179 		JBrowse link
G Jag1 jagged 1 IAGP MGI PMID:11861489 PMID:18365007 PMID:21062863 PMID:29162437 NCBI chr 2:136,923,371...136,958,440
Ensembl chr 2:136,923,376...136,958,564 		JBrowse link
G Jun jun proto-oncogene IAGP MGI PMID:8371760 NCBI chr 4:94,937,273...94,940,459
Ensembl chr 4:94,937,271...94,940,459 		JBrowse link
G Mks1 MKS transition zone complex subunit 1 IAGP MGI PMID:19776033 NCBI chr11:87,744,007...87,754,629
Ensembl chr11:87,744,041...87,754,629 		JBrowse link
G Notch2 notch 2 IAGP MGI PMID:11861489 PMID:18365007 NCBI chr 3:97,920,854...98,057,683
Ensembl chr 3:97,920,843...98,057,677 		JBrowse link
G Onecut1 one cut domain, family member 1 IAGP MGI PMID:11934848 NCBI chr 9:74,769,203...74,796,930
Ensembl chr 9:74,769,203...74,799,063 		JBrowse link
G Onecut2 one cut domain, family member 2 IAGP MGI PMID:16103213 NCBI chr18:64,473,098...64,531,559
Ensembl chr18:64,473,091...64,534,058 		JBrowse link
G Pdx1 pancreatic and duodenal homeobox 1 IAGP MGI PMID:8631275 NCBI chr 5:147,206,907...147,212,658
Ensembl chr 5:147,206,769...147,212,658 		JBrowse link
G Pkhd1 polycystic kidney and hepatic disease 1 IAGP MGI PMID:15830394 PMID:17575307 NCBI chr 1:20,128,003...20,688,306
Ensembl chr 1:20,128,003...20,688,288 		JBrowse link
G Rpgrip1l Rpgrip1-like IAGP MGI PMID:17558409 NCBI chr 8:91,943,658...92,039,919
Ensembl chr 8:91,943,658...92,039,890 		JBrowse link
G Sox17 SRY (sex determining region Y)-box 17 IAGP MGI PMID:19619492 PMID:23293295 NCBI chr 1:4,561,151...4,567,624
Ensembl chr 1:4,561,154...4,567,577 		JBrowse link
G Speer6-ps1 spermatogenesis associated glutamate (E)-rich protein 6, pseudogene 1 IAGP MGI PMID:19551907 PMID:20643348 NCBI chr13:3,199,475...3,239,678
Ensembl chr13:3,236,206...3,239,317
Ensembl chr13:3,236,206...3,239,317 		JBrowse link
G Yap1 yes-associated protein 1 IAGP MGI PMID:20643348 NCBI chr 9:7,932,000...8,004,890
Ensembl chr 9:7,932,000...8,004,597 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 16532
    endocrine/exocrine gland phenotype 3374
      abnormal gland morphology 3138
        abnormal bile duct morphology 96
          abnormal bile duct development 19
Path 2
Term Annotations click to browse term
  mammalian phenotype 16532
    liver/biliary system phenotype 1918
      abnormal hepatobiliary system morphology 1755
        abnormal biliary tract morphology 179
          abnormal bile duct morphology 96
            abnormal bile duct development 19
paths to the root