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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term:abnormal T cell differentiation
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Accession:MP:0002145 term browser browse the term
Definition:atypical production of or inability to produce mature T cells, and/or accumulation of T cell precursors
Synonyms:exact_synonym: abnormal T cell development;   abnormal T cell maturation;   abnormal T cell morphology/development;   abnormal T lymphocyte development;   abnormal lymphoid development/ T lymphocyte defects;   immune system: lymphoid development/ T lymphocyte defects
 narrow_synonym: abnormal thymocyte development
 alt_id: MP:0001821;   MP:0001822;   MP:0002431;   MP:0002489
 xref: MGI:2173605


show annotations for term's descendants           Sort by:
abnormal T cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adam10 a disintegrin and metallopeptidase domain 10 IAGP MGI PMID:18635581 PMID:22042698 NCBI chr 9:70,586,133...70,687,511
Ensembl chr 9:70,586,279...70,687,511 		JBrowse link
G Aff1 AF4/FMR2 family, member 1 IAGP MGI PMID:10887138 NCBI chr 5:103,840,307...104,003,188
Ensembl chr 5:103,840,240...104,003,188 		JBrowse link
G Agtpbp1 ATP/GTP binding protein 1 IAGP MGI PMID:12787314 NCBI chr13:59,597,348...59,705,184
Ensembl chr13:59,593,556...59,733,041 		JBrowse link
G Aire autoimmune regulator IAGP MGI PMID:18414681 NCBI chr10:77,865,856...77,879,444
Ensembl chr10:77,865,856...77,879,444 		JBrowse link
G Apc APC, WNT signaling pathway regulator IAGP MGI PMID:16025118 NCBI chr18:34,353,350...34,455,243
Ensembl chr18:34,353,977...34,455,605 		JBrowse link
G Aptx aprataxin IAGP MGI PMID:34723800 NCBI chr 4:40,682,078...40,703,206
Ensembl chr 4:40,682,382...40,703,194 		JBrowse link
G Atm ataxia telangiectasia mutated IAGP MGI PMID:8917548 PMID:11389091 PMID:34723800 NCBI chr 9:53,348,422...53,448,125
Ensembl chr 9:53,350,449...53,448,040 		JBrowse link
G B2m beta-2 microglobulin IAGP MGI PMID:11687799 PMID:20360383 NCBI chr 2:121,978,168...121,983,563
Ensembl chr 2:121,978,167...121,983,564 		JBrowse link
G B9d2 B9 protein domain 2 IAGP MGI PMID:21435587 NCBI chr 7:25,380,205...25,385,987
Ensembl chr 7:25,380,205...25,385,983 		JBrowse link
G Bad BCL2-associated agonist of cell death IAGP MGI PMID:12431371 NCBI chr19:6,919,229...6,929,273
Ensembl chr19:6,919,229...6,929,267 		JBrowse link
G Bak1 BCL2-antagonist/killer 1 IAGP MGI PMID:16055554 NCBI chr17:27,238,786...27,247,601
Ensembl chr17:27,238,784...27,247,983 		JBrowse link
G Bax BCL2-associated X protein IAGP MGI PMID:16055554 NCBI chr 7:45,111,124...45,116,332
Ensembl chr 7:45,111,121...45,116,322 		JBrowse link
G Bcl10 B cell leukemia/lymphoma 10 IAGP MGI PMID:11163238 NCBI chr 3:145,630,017...145,640,121
Ensembl chr 3:145,628,559...145,640,111 		JBrowse link
G Bcl11a BCL11 transcription factor A IAGP MGI PMID:23230003 NCBI chr11:24,026,498...24,123,558
Ensembl chr11:24,028,056...24,124,123 		JBrowse link
G Bcl11b B cell leukemia/lymphoma 11B IAGP MGI PMID:12717433 NCBI chr12:107,876,662...107,970,404
Ensembl chr12:107,876,662...107,969,861 		JBrowse link
G Bcl2 B cell leukemia/lymphoma 2 IAGP MGI PMID:8170972 NCBI chr 1:106,465,906...106,642,020
Ensembl chr 1:106,465,908...106,642,004 		JBrowse link
G Bcl2l11 BCL2 like 11 IAGP MGI PMID:16270031 NCBI chr 2:127,967,958...128,004,467
Ensembl chr 2:127,967,958...128,004,467 		JBrowse link
G Bik BCL2-interacting killer IAGP MGI PMID:16270031 NCBI chr15:83,410,992...83,428,836
Ensembl chr15:83,411,063...83,428,835 		JBrowse link
G Birc5 baculoviral IAP repeat-containing 5 IAGP MGI PMID:14699085 NCBI chr11:117,740,063...117,746,569
Ensembl chr11:117,740,077...117,746,569 		JBrowse link
G Cadm1 cell adhesion molecule 1 IAGP MGI PMID:22084409 NCBI chr 9:47,441,468...47,773,578
Ensembl chr 9:47,441,471...47,769,413 		JBrowse link
G Card11 caspase recruitment domain family, member 11 IAGP MGI PMID:12867038 NCBI chr 5:140,858,109...140,986,398
Ensembl chr 5:140,858,745...140,986,337 		JBrowse link
G Cbfb core binding factor beta IAGP MGI PMID:16940420 PMID:17646405 PMID:18776905 NCBI chr 8:105,897,306...105,944,621
Ensembl chr 8:105,897,306...105,944,621 		JBrowse link
G Cbl Casitas B-lineage lymphoma IAGP MGI PMID:15238603 PMID:16211006 NCBI chr 9:44,054,273...44,145,556
Ensembl chr 9:44,054,273...44,145,346 		JBrowse link
G Ccr9 C-C motif chemokine receptor 9 IAGP MGI PMID:11675330 PMID:15484191 NCBI chr 9:123,596,276...123,612,522
Ensembl chr 9:123,507,504...123,613,395 		JBrowse link
G Cd247 CD247 antigen IAGP MGI PMID:7520000 PMID:8223444 PMID:8223495 PMID:10072519 PMID:22945921 NCBI chr 1:165,607,514...165,698,722
Ensembl chr 1:165,616,250...165,704,846 		JBrowse link
G Cd28 CD28 antigen IAGP MGI PMID:10725709 NCBI chr 1:60,785,547...60,812,521
Ensembl chr 1:60,755,959...60,812,518 		JBrowse link
G Cd3e CD3 antigen, epsilon polypeptide IAGP MGI PMID:23267019 NCBI chr 9:44,910,033...44,920,961
Ensembl chr 9:44,910,038...44,920,925 		JBrowse link
G Cd3g CD3 antigen, gamma polypeptide IAGP MGI PMID:11160319 NCBI chr 9:44,880,870...44,891,729
Ensembl chr 9:44,880,870...44,891,729 		JBrowse link
G Cd4 CD4 antigen IAGP MGI PMID:8500525 PMID:9551897 NCBI chr 6:124,841,656...124,865,210
Ensembl chr 6:124,841,655...124,865,184 		JBrowse link
G Cd40lg CD40 ligand IAGP MGI PMID:7882172 NCBI chr  X:56,257,448...56,269,402
Ensembl chr  X:56,257,503...56,269,402 		JBrowse link
G Cd79a CD79A antigen (immunoglobulin-associated alpha) IAGP MGI PMID:12097390 NCBI chr 7:24,596,922...24,601,283
Ensembl chr 7:24,596,806...24,601,622 		JBrowse link
G Cd8a CD8 subunit alpha IAGP MGI PMID:8500525 NCBI chr 6:71,350,411...71,356,155
Ensembl chr 6:71,350,411...71,356,157 		JBrowse link
G Cdk6 cyclin dependent kinase 6 IAGP MGI PMID:19155308 PMID:21508411 NCBI chr 5:3,391,004...3,581,008
Ensembl chr 5:3,391,485...3,581,008 		JBrowse link
G Chd4 chromodomain helicase DNA binding protein 4 IAGP MGI PMID:15189737 NCBI chr 6:125,073,144...125,107,554
Ensembl chr 6:125,072,944...125,107,554 		JBrowse link
G Ciita class II transactivator IAGP MGI PMID:9164958 PMID:10201997 NCBI chr16:10,297,877...10,348,928
Ensembl chr16:10,297,923...10,346,282 		JBrowse link
G Csk c-src tyrosine kinase IAGP MGI PMID:20346773 NCBI chr 9:57,533,929...57,560,758
Ensembl chr 9:57,533,929...57,560,914 		JBrowse link
G Ctcf CCCTC-binding factor IAGP MGI PMID:18923423 NCBI chr 8:106,351,135...106,409,554
Ensembl chr 8:106,363,200...106,409,554 		JBrowse link
G Ctla4 cytotoxic T-lymphocyte-associated protein 4 IAGP MGI PMID:7584144 NCBI chr 1:60,948,184...60,954,991
Ensembl chr 1:60,926,159...60,954,991 		JBrowse link
G Ctsl cathepsin L IEA MGI NCBI chr13:64,509,704...64,518,586
Ensembl chr13:64,507,151...64,518,704 		JBrowse link
G Cux1 cut-like homeobox 1 IAGP MGI PMID:11739170 NCBI chr 5:136,276,989...136,596,429
Ensembl chr 5:136,276,989...136,596,344 		JBrowse link
G Cxcr4 C-X-C motif chemokine receptor 4 IAGP MGI PMID:12707343 NCBI chr 1:128,515,936...128,520,036
Ensembl chr 1:128,515,936...128,520,030 		JBrowse link
G Dck deoxycytidine kinase IAGP MGI PMID:20080663 PMID:22407915 NCBI chr 5:88,912,872...88,931,136
Ensembl chr 5:88,912,855...88,931,140 		JBrowse link
G Dffb DNA fragmentation factor, beta subunit IAGP MGI PMID:12524536 NCBI chr 4:154,048,904...154,059,578
Ensembl chr 4:154,048,906...154,059,583 		JBrowse link
G Dgka diacylglycerol kinase, alpha IAGP MGI PMID:17028587 NCBI chr10:128,556,000...128,581,002
Ensembl chr10:128,556,003...128,580,724 		JBrowse link
G Dgkz diacylglycerol kinase zeta IAGP MGI PMID:17028587 NCBI chr 2:91,763,167...91,806,788
Ensembl chr 2:91,763,169...91,806,209 		JBrowse link
G Dhx9 DExH-box helicase 9 IAGP MGI PMID:22988576 NCBI chr 1:153,331,506...153,363,464
Ensembl chr 1:153,331,504...153,363,406 		JBrowse link
G Dll4 delta like canonical Notch ligand 4 IAGP MGI PMID:18824585 NCBI chr 2:119,156,286...119,166,145
Ensembl chr 2:119,156,265...119,166,443 		JBrowse link
G Dnase2a deoxyribonuclease II alpha IAGP MGI PMID:12524536 NCBI chr 8:85,635,384...85,638,332
Ensembl chr 8:85,635,189...85,649,544 		JBrowse link
G Dock8 dedicator of cytokinesis 8 IEA MGI NCBI chr19:24,976,753...25,179,796
Ensembl chr19:24,976,898...25,179,796 		JBrowse link
G E2f2 E2F transcription factor 2 IAGP MGI PMID:11754817 NCBI chr 4:135,899,585...135,923,368
Ensembl chr 4:135,899,705...135,923,368 		JBrowse link
G Ebi3 Epstein-Barr virus induced gene 3 IAGP MGI PMID:18412165 NCBI chr17:56,259,623...56,264,022
Ensembl chr17:56,259,640...56,264,022 		JBrowse link
G Efnb1 ephrin B1 IAGP MGI PMID:21976681 NCBI chr  X:98,179,667...98,192,628
Ensembl chr  X:98,179,736...98,192,597 		JBrowse link
G Efnb2 ephrin B2 IAGP MGI PMID:21976681 NCBI chr 8:8,667,235...8,711,242
Ensembl chr 8:8,667,434...8,711,242 		JBrowse link
G Elf4 E74 like ETS transcription factor 4 IAGP MGI PMID:12387738 NCBI chr  X:47,499,926...47,552,009
Ensembl chr  X:47,499,923...47,552,009 		JBrowse link
G Fadd Fas associated via death domain IAGP MGI PMID:11353862 NCBI chr 7:144,132,060...144,136,178
Ensembl chr 7:144,131,055...144,136,200 		JBrowse link
G Fas Fas cell surface death receptor IAGP MGI PMID:2406366 NCBI chr19:34,267,926...34,305,175
Ensembl chr19:34,268,066...34,305,172 		JBrowse link
G Fasl Fas ligand IAGP MGI PMID:3009614 PMID:3856256 NCBI chr 1:161,608,260...161,616,064
Ensembl chr 1:161,608,258...161,616,064 		JBrowse link
G Fbxo7 F-box protein 7 IAGP MGI PMID:30840666 NCBI chr10:85,856,313...85,887,737
Ensembl chr10:85,857,836...85,887,737 		JBrowse link
G Fbxw7 F-box and WD-40 domain protein 7 IAGP MGI PMID:18474632 PMID:23791182 NCBI chr 3:84,721,901...84,886,505
Ensembl chr 3:84,722,575...84,886,505 		JBrowse link
G Foxn1 forkhead box N1 IAGP MGI PMID:14528302 PMID:18824585 NCBI chr11:78,248,403...78,277,597
Ensembl chr11:78,248,403...78,277,384 		JBrowse link
G Foxp3 forkhead box P3 IAGP MGI PMID:17353370 PMID:20072126 PMID:24164480 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484 		JBrowse link
G Fyn Fyn proto-oncogene IAGP MGI PMID:8562954 NCBI chr10:39,245,735...39,441,377
Ensembl chr10:39,244,851...39,441,377 		JBrowse link
G Gata3 GATA binding protein 3 IAGP MGI PMID:14670303 PMID:18776904 PMID:19934022 NCBI chr 2:9,861,889...9,894,845
Ensembl chr 2:9,861,889...9,894,845 		JBrowse link
G Gba1 glucosylceramidase beta 1 IAGP MGI PMID:20962279 NCBI chr 3:89,110,235...89,119,944
Ensembl chr 3:89,110,235...89,116,273 		JBrowse link
G Gfi1 growth factor independent 1 transcription repressor IAGP MGI PMID:11810106 PMID:15252036 PMID:16397623 NCBI chr 5:107,864,521...107,873,671
Ensembl chr 5:107,864,523...107,873,902 		JBrowse link
G Grap2 GRB2-related adaptor protein 2 IAGP MGI PMID:19401562 NCBI chr15:80,456,798...80,537,055
Ensembl chr15:80,456,795...80,537,055 		JBrowse link
G Grb2 growth factor receptor bound protein 2 IAGP MGI PMID:20498059 NCBI chr11:115,534,871...115,599,423
Ensembl chr11:115,534,871...115,599,423 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:16980619 PMID:18327259 PMID:20439541 PMID:22523384 PMID:23230003 More... NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294 		JBrowse link
G H2-Ab1 histocompatibility 2, class II antigen A, beta 1 IAGP MGI PMID:11687799 PMID:23712430 NCBI chr17:34,482,201...34,488,392
Ensembl chr17:34,476,663...34,488,393 		JBrowse link
G Havcr1 hepatitis A virus cellular receptor 1 IAGP MGI PMID:22773818 NCBI chr11:46,630,644...46,670,405
Ensembl chr11:46,625,907...46,670,405 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 IAGP MGI PMID:21093323 NCBI chr16:29,883,259...29,886,614
Ensembl chr16:29,883,202...29,886,614 		JBrowse link
G Hif1a hypoxia inducible factor 1, alpha subunit IAGP MGI PMID:22995899 NCBI chr12:73,948,186...73,994,304
Ensembl chr12:73,948,149...73,994,304 		JBrowse link
G Hnrnpl heterogeneous nuclear ribonucleoprotein L IAGP MGI PMID:22523384 NCBI chr 7:28,507,971...28,521,693
Ensembl chr 7:28,507,966...28,521,691 		JBrowse link
G Hnrnpll heterogeneous nuclear ribonucleoprotein L-like IAGP MGI PMID:19100700 NCBI chr17:80,336,916...80,369,697
Ensembl chr17:80,336,916...80,369,697 		JBrowse link
G Icos inducible T cell co-stimulator IAGP MGI PMID:11343122 NCBI chr 1:60,999,909...61,039,481
Ensembl chr 1:61,017,086...61,039,479 		JBrowse link
G Icosl icos ligand IAGP MGI PMID:14615582 NCBI chr10:77,904,921...77,915,359
Ensembl chr10:77,905,136...77,919,747 		JBrowse link
G Id3 inhibitor of DNA binding 3 IAGP MGI PMID:10661402 PMID:17622570 PMID:20932862 NCBI chr 4:135,871,133...135,872,703
Ensembl chr 4:135,870,808...135,873,066 		JBrowse link
G Igh immunoglobulin heavy chain complex IAGP MGI PMID:16968900 NCBI chr12:113,222,388...115,973,574 JBrowse link
G Ikzf1 IKAROS family zinc finger 1 IAGP MGI PMID:7585946 PMID:8986714 PMID:12479824 PMID:12871645 PMID:24013668 NCBI chr11:11,634,970...11,722,930
Ensembl chr11:11,634,980...11,722,926 		JBrowse link
G Il21 interleukin 21 IAGP MGI PMID:17581589 NCBI chr 3:37,276,908...37,286,785
Ensembl chr 3:37,276,908...37,286,785 		JBrowse link
G Il5ra interleukin 5 receptor, alpha IAGP MGI PMID:8630733 NCBI chr 6:106,687,336...106,725,998
Ensembl chr 6:106,687,318...106,725,998 		JBrowse link
G Il6 interleukin 6 IAGP MGI PMID:8127368 NCBI chr 5:30,218,112...30,224,973
Ensembl chr 5:30,218,112...30,224,979 		JBrowse link
G Il6st interleukin 6 signal transducer IAGP MGI PMID:9815272 NCBI chr13:112,600,604...112,643,394
Ensembl chr13:112,600,604...112,646,620 		JBrowse link
G Il7r interleukin 7 receptor IAGP MGI PMID:17325202 NCBI chr15:9,505,880...9,530,270
Ensembl chr15:9,505,874...9,530,262 		JBrowse link
G Inpp5d inositol polyphosphate-5-phosphatase D IEA MGI NCBI chr 1:87,548,034...87,648,232
Ensembl chr 1:87,548,034...87,648,229 		JBrowse link
G Irak3 interleukin-1 receptor-associated kinase 3 IAGP MGI PMID:24696448 NCBI chr10:119,977,553...120,038,035
Ensembl chr10:119,977,553...120,038,035 		JBrowse link
G Itgb2 integrin beta 2 IEA MGI NCBI chr10:77,366,164...77,401,542
Ensembl chr10:77,366,086...77,401,542 		JBrowse link
G Jak1 Janus kinase 1 IAGP MGI PMID:9590172 NCBI chr 4:101,009,171...101,122,493
Ensembl chr 4:101,009,564...101,122,479 		JBrowse link
G Jak3 Janus kinase 3 IAGP MGI PMID:11034372 NCBI chr 8:72,129,027...72,143,221
Ensembl chr 8:72,128,940...72,143,219 		JBrowse link
G Kdelr1 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1 IAGP MGI PMID:26438836 NCBI chr 7:45,522,264...45,533,150
Ensembl chr 7:45,522,196...45,533,156 		JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase IAGP MGI PMID:12354381 PMID:15024050 NCBI chr 5:75,735,647...75,817,382
Ensembl chr 5:75,735,576...75,817,382 		JBrowse link
G Klf2 Kruppel-like transcription factor 2 (lung) IAGP MGI PMID:19592277 NCBI chr 8:73,072,906...73,075,498
Ensembl chr 8:73,072,877...73,075,500 		JBrowse link
G Krt14 keratin 14 IAGP MGI PMID:23918954 NCBI chr11:100,093,988...100,098,336
Ensembl chr11:100,093,988...100,098,374 		JBrowse link
G Lat linker for activation of T cells IAGP MGI PMID:11457888 PMID:12065840 PMID:12871507 PMID:15153499 PMID:19380807 NCBI chr 7:125,962,999...125,968,877
Ensembl chr 7:125,962,996...125,968,742 		JBrowse link
G Lcp2 lymphocyte cytosolic protein 2 IAGP MGI PMID:15238603 PMID:19401562 NCBI chr11:33,996,928...34,042,281
Ensembl chr11:33,996,920...34,042,295 		JBrowse link
G Lig4 ligase IV, DNA, ATP-dependent IAGP MGI PMID:10911993 PMID:20133615 NCBI chr 8:10,020,020...10,027,680
Ensembl chr 8:10,019,049...10,027,686 		JBrowse link
G Lmbr1l limb region 1 like IAGP MGI PMID:31073040 NCBI chr15:98,801,798...98,815,944
Ensembl chr15:98,801,798...98,816,112 		JBrowse link
G Lrrc8a leucine rich repeat containing 8A VRAC subunit A IAGP MGI PMID:24752297 NCBI chr 2:30,127,781...30,153,802
Ensembl chr 2:30,127,727...30,153,802 		JBrowse link
G Lyl1 lymphoblastomic leukemia 1 IAGP MGI PMID:16514064 NCBI chr 8:85,428,051...85,432,876
Ensembl chr 8:85,428,078...85,431,569 		JBrowse link
G Malt1 MALT1 paracaspase IAGP MGI PMID:14576442 NCBI chr18:65,564,010...65,612,138
Ensembl chr18:65,564,009...65,612,138 		JBrowse link
G Marchf1 membrane associated ring-CH-type finger 1 IAGP MGI PMID:23712430 NCBI chr 8:66,070,558...66,925,761
Ensembl chr 8:66,070,552...66,924,289 		JBrowse link
G Mcl1 myeloid cell leukemia sequence 1 IAGP MGI PMID:18566418 NCBI chr 3:95,564,017...95,583,553
Ensembl chr 3:95,566,099...95,570,487 		JBrowse link
G Mmp19 matrix metallopeptidase 19 IAGP MGI PMID:18523579 NCBI chr10:128,626,779...128,636,696
Ensembl chr10:128,626,779...128,636,693 		JBrowse link
G Mtor mechanistic target of rapamycin kinase IAGP MGI PMID:19538929 NCBI chr 4:148,533,039...148,642,142
Ensembl chr 4:148,533,068...148,642,140 		JBrowse link
G Mysm1 myb-like, SWIRM and MPN domains 1 IAGP MGI PMID:22169041 NCBI chr 4:94,830,274...94,867,392
Ensembl chr 4:94,830,277...94,867,337 		JBrowse link
G Nfatc2 nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2 IAGP MGI PMID:17579027 NCBI chr 2:168,318,330...168,443,900
Ensembl chr 2:168,318,330...168,443,577 		JBrowse link
G Nfatc3 nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3 IAGP MGI PMID:17579027 NCBI chr 8:106,785,450...106,857,169
Ensembl chr 8:106,785,472...106,857,169 		JBrowse link
G Nfkb2 nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100 IAGP MGI PMID:18025196 NCBI chr19:46,285,478...46,300,839
Ensembl chr19:46,292,759...46,300,824 		JBrowse link
G Nfkbia nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha IAGP MGI PMID:14665694 NCBI chr12:55,536,194...55,539,432
Ensembl chr12:55,536,195...55,539,432 		JBrowse link
G Nfkbie nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon IAGP MGI PMID:14665694 NCBI chr17:45,866,626...45,874,095
Ensembl chr17:45,866,629...45,874,095 		JBrowse link
G Notch1 notch 1 IAGP MGI PMID:10367900 PMID:17261636 PMID:18227520 NCBI chr 2:26,347,914...26,393,834
Ensembl chr 2:26,347,915...26,406,675 		JBrowse link
G Notch2 notch 2 IAGP MGI PMID:17261636 NCBI chr 3:97,920,854...98,057,683
Ensembl chr 3:97,920,843...98,057,677 		JBrowse link
G Nudcd3 NudC domain containing 3 IAGP MGI PMID:38787962 NCBI chr11:6,055,705...6,150,190
Ensembl chr11:6,055,691...6,150,415 		JBrowse link
G Pax1 paired box 1 IAGP MGI PMID:16315099 NCBI chr 2:147,203,850...147,216,972
Ensembl chr 2:147,203,845...147,235,215 		JBrowse link
G Pdpk1 3-phosphoinositide dependent protein kinase 1 IAGP MGI PMID:20944007 NCBI chr17:24,292,654...24,370,957
Ensembl chr17:24,292,654...24,369,898 		JBrowse link
G Pgd phosphogluconate dehydrogenase IAGP MGI PMID:33691103 NCBI chr 4:149,234,448...149,251,162
Ensembl chr 4:149,234,448...149,251,228 		JBrowse link
G Pgm3 phosphoglucomutase 3 IAGP MGI PMID:17548465 NCBI chr 9:86,423,997...86,453,927
Ensembl chr 9:86,436,430...86,453,895 		JBrowse link
G Phf20 PHD finger protein 20 IAGP MGI PMID:22072714 NCBI chr 2:156,038,567...156,151,873
Ensembl chr 2:156,038,386...156,151,872 		JBrowse link
G Phf6 PHD finger protein 6 IAGP MGI PMID:30755422 NCBI chr  X:52,001,091...52,045,838
Ensembl chr  X:52,001,143...52,045,820 		JBrowse link
G Pik3cd phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta IAGP MGI PMID:16304053 NCBI chr 4:149,733,625...149,787,023
Ensembl chr 4:149,733,625...149,787,028 		JBrowse link
G Pik3cg phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma IAGP MGI PMID:10669416 PMID:16304053 NCBI chr12:32,223,128...32,258,675
Ensembl chr12:32,223,472...32,258,658 		JBrowse link
G Pole4 polymerase (DNA-directed), epsilon 4 (p12 subunit) IAGP MGI PMID:29754823 NCBI chr 6:82,593,513...82,629,985
Ensembl chr 6:82,595,973...82,682,346 		JBrowse link
G Ppp3cb protein phosphatase 3, catalytic subunit, beta isoform IAGP MGI PMID:12091710 NCBI chr14:20,549,432...20,596,641
Ensembl chr14:20,549,432...20,596,641 		JBrowse link
G Ppp4c protein phosphatase 4, catalytic subunit IAGP MGI PMID:17060460 NCBI chr 7:126,385,038...126,391,729
Ensembl chr 7:126,385,038...126,391,668 		JBrowse link
G Prkdc protein kinase, DNA activated, catalytic polypeptide IAGP MGI PMID:8094405 PMID:9768755 NCBI chr16:15,455,698...15,660,103
Ensembl chr16:15,455,730...15,660,099 		JBrowse link
G Prnp prion protein IAGP MGI PMID:16517717 NCBI chr 2:131,751,848...131,780,356
Ensembl chr 2:131,751,848...131,780,349 		JBrowse link
G Psmb11 proteasome (prosome, macropain) subunit, beta type, 11 IAGP MGI PMID:23569244 NCBI chr14:54,862,767...54,867,013
Ensembl chr14:54,858,890...54,867,013 		JBrowse link
G Ptcra pre T cell antigen receptor alpha IAGP MGI PMID:18203137 NCBI chr17:47,066,589...47,074,659
Ensembl chr17:47,066,589...47,074,638 		JBrowse link
G Ptk2 PTK2 protein tyrosine kinase 2 IAGP MGI PMID:8562954 NCBI chr15:73,076,951...73,297,192
Ensembl chr15:73,076,951...73,295,129 		JBrowse link
G Ptpn2 protein tyrosine phosphatase, non-receptor type 2 IAGP MGI PMID:22590589 NCBI chr18:67,798,571...67,857,697
Ensembl chr18:67,798,581...67,857,665 		JBrowse link
G Ptpn22 protein tyrosine phosphatase, non-receptor type 22 (lymphoid) IAGP MGI PMID:23619366 NCBI chr 3:103,763,891...103,819,568
Ensembl chr 3:103,767,111...103,819,563 		JBrowse link
G Ptpn6 protein tyrosine phosphatase, non-receptor type 6 IEA MGI NCBI chr 6:124,697,670...124,715,672
Ensembl chr 6:124,697,670...124,715,677 		JBrowse link
G Ptpn9 protein tyrosine phosphatase, non-receptor type 9 IAGP MGI PMID:16330817 NCBI chr 9:56,902,252...56,970,092
Ensembl chr 9:56,902,207...56,970,091 		JBrowse link
G Ptprc protein tyrosine phosphatase receptor type C IAGP MGI PMID:8666928 PMID:9725213 PMID:10508267 PMID:20346773 PMID:22988576 NCBI chr 1:137,990,601...138,103,491
Ensembl chr 1:137,990,599...138,103,446 		JBrowse link
G Rad21 RAD21 cohesin complex component IAGP MGI PMID:21832993 NCBI chr15:51,826,000...51,856,934
Ensembl chr15:51,825,636...51,855,143 		JBrowse link
G Rag1 recombination activating 1 IAGP MGI PMID:1547488 PMID:8934569 PMID:11313471 PMID:11696599 PMID:14581608 More... NCBI chr 2:101,468,597...101,479,877
Ensembl chr 2:101,468,627...101,479,846 		JBrowse link
G Rag2 recombination activating gene 2 IAGP MGI PMID:15238603 PMID:18776904 PMID:20937703 PMID:21746917 NCBI chr 2:101,455,057...101,462,873
Ensembl chr 2:101,455,063...101,462,874 		JBrowse link
G Rasgrp1 RAS guanyl releasing protein 1 IAGP MGI PMID:22719950 NCBI chr 2:117,110,464...117,173,358
Ensembl chr 2:117,110,474...117,173,482 		JBrowse link
G Rc3h1 RING CCCH (C3H) domains 1 IAGP MGI PMID:15917799 NCBI chr 1:160,733,981...160,802,546
Ensembl chr 1:160,733,988...160,802,548 		JBrowse link
G Rel reticuloendotheliosis oncogene IEA MGI NCBI chr11:23,686,847...23,720,969
Ensembl chr11:23,686,847...23,720,970 		JBrowse link
G Rorc RAR-related orphan receptor gamma IAGP MGI PMID:17882258 PMID:28846085 NCBI chr 3:94,280,106...94,305,583
Ensembl chr 3:94,280,101...94,305,583 		JBrowse link
G Rpl22 ribosomal protein L22 IAGP MGI PMID:17555992 NCBI chr 4:152,408,893...152,418,539
Ensembl chr 4:152,410,199...152,418,528 		JBrowse link
G Runx1 runt related transcription factor 1 IAGP MGI PMID:14966519 PMID:16081688 PMID:17626615 NCBI chr16:92,398,354...92,622,962
Ensembl chr16:92,398,354...92,623,037 		JBrowse link
G Satb1 special AT-rich sequence binding protein 1 IAGP MGI PMID:10716941 NCBI chr17:52,043,215...52,140,318
Ensembl chr17:52,043,215...52,140,318 		JBrowse link
G Septin9 septin 9 IAGP MGI PMID:23644740 NCBI chr11:117,090,487...117,253,151
Ensembl chr11:117,090,487...117,253,151 		JBrowse link
G Sit1 suppression inducing transmembrane adaptor 1 IAGP MGI PMID:16107703 NCBI chr 4:43,482,083...43,483,709
Ensembl chr 4:43,482,081...43,483,734 		JBrowse link
G Skint1 selection and upkeep of intraepithelial T cells 1 IAGP MGI PMID:18408721 NCBI chr 4:111,863,466...111,886,735
Ensembl chr 4:111,863,466...111,886,735 		JBrowse link
G Sla src-like adaptor IAGP MGI PMID:11567635 NCBI chr15:66,652,713...66,703,921
Ensembl chr15:66,652,668...66,703,678 		JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 IAGP MGI PMID:12932351 NCBI chr 9:21,527,377...21,615,526
Ensembl chr 9:21,527,465...21,615,526 		JBrowse link
G Snai2 snail family zinc finger 2 IAGP MGI PMID:12149208 NCBI chr16:14,523,716...14,527,259
Ensembl chr16:14,523,716...14,527,249 		JBrowse link
G Socs1 suppressor of cytokine signaling 1 IAGP MGI PMID:10490100 PMID:12705851 NCBI chr16:10,601,672...10,603,400
Ensembl chr16:10,600,104...10,603,400 		JBrowse link
G Sos1 SOS Ras/Rac guanine nucleotide exchange factor 1 IAGP MGI PMID:21746917 NCBI chr17:80,701,181...80,787,882
Ensembl chr17:80,701,180...80,787,882 		JBrowse link
G Sphk1 sphingosine kinase 1 IAGP MGI PMID:17363629 NCBI chr11:116,421,662...116,427,502
Ensembl chr11:116,421,751...116,427,501 		JBrowse link
G Sphk2 sphingosine kinase 2 IAGP MGI PMID:17363629 NCBI chr 7:45,358,887...45,367,426
Ensembl chr 7:45,358,891...45,367,426 		JBrowse link
G Spi1 Spi-1 proto-oncogene IAGP MGI PMID:8079170 PMID:8896458 NCBI chr 2:90,912,750...90,946,104
Ensembl chr 2:90,912,735...90,946,101 		JBrowse link
G Srsf2 serine and arginine-rich splicing factor 2 IAGP MGI PMID:11239462 NCBI chr11:116,740,723...116,744,511
Ensembl chr11:116,740,727...116,743,920 		JBrowse link
G Stat1 signal transducer and activator of transcription 1 IEA MGI NCBI chr 1:52,158,588...52,201,024
Ensembl chr 1:52,158,599...52,201,024 		JBrowse link
G Stat2 signal transducer and activator of transcription 2 IAGP MGI PMID:11163195 NCBI chr10:128,106,367...128,128,722
Ensembl chr10:128,106,428...128,128,718 		JBrowse link
G Stim1 stromal interaction molecule 1 IAGP MGI PMID:18327260 NCBI chr 7:101,909,279...102,086,525
Ensembl chr 7:101,917,013...102,086,526 		JBrowse link
G Stim2 stromal interaction molecule 2 IAGP MGI PMID:18327260 NCBI chr 5:54,155,865...54,278,399
Ensembl chr 5:54,155,841...54,278,399 		JBrowse link
G Stk4 serine/threonine kinase 4 IAGP MGI PMID:19073936 NCBI chr 2:163,916,033...163,997,444
Ensembl chr 2:163,912,242...163,997,444 		JBrowse link
G Supv3l1 suppressor of var1, 3-like 1 (S. cerevisiae) IAGP MGI PMID:19145458 NCBI chr10:62,265,000...62,287,294
Ensembl chr10:62,264,988...62,285,517 		JBrowse link
G Taf7 TATA-box binding protein associated factor 7 IAGP MGI PMID:22411629 NCBI chr18:37,773,544...37,777,257
Ensembl chr18:37,773,544...37,777,257 		JBrowse link
G Tbata thymus, brain and testes associated IAGP MGI PMID:20937703 NCBI chr10:61,007,743...61,024,620
Ensembl chr10:61,007,733...61,024,620 		JBrowse link
G Tcf12 transcription factor 12 IAGP MGI PMID:10958665 PMID:11937548 PMID:18093538 NCBI chr 9:71,751,534...72,019,611
Ensembl chr 9:71,749,970...72,019,153 		JBrowse link
G Tcf3 transcription factor 3 IAGP MGI PMID:11937548 PMID:16315099 PMID:18093538 NCBI chr10:80,245,375...80,269,814
Ensembl chr10:80,245,348...80,269,481 		JBrowse link
G Tcf4 transcription factor 4 IAGP MGI PMID:18384878 NCBI chr18:69,476,500...69,821,038
Ensembl chr18:69,476,427...69,822,150 		JBrowse link
G Tcf7 transcription factor 7, T cell specific IAGP MGI PMID:7870176 NCBI chr11:52,137,347...52,174,211
Ensembl chr11:52,143,198...52,174,158 		JBrowse link
G Tcra T cell receptor alpha chain IAGP MGI PMID:12049722 PMID:17617584 PMID:18203137 NCBI chr14:52,665,424...54,461,655 JBrowse link
G Tcrb T cell receptor beta chain IAGP MGI PMID:17410206 PMID:17617584 NCBI chr 6:40,868,230...41,535,305 JBrowse link
G Tcrd T-cell receptor delta chain IAGP MGI PMID:12049722 PMID:18203137 NCBI chr14:54,183,530...54,396,655 JBrowse link
G Tespa1 thymocyte expressed, positive selection associated 1 IAGP MGI PMID:22561606 NCBI chr10:130,158,696...130,199,338
Ensembl chr10:130,158,739...130,199,980 		JBrowse link
G Tfap4 transcription factor AP4 IAGP MGI PMID:21873191 NCBI chr16:4,362,525...4,378,625
Ensembl chr16:4,362,525...4,377,718 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 IAGP MGI PMID:17481928 PMID:21435587 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502 		JBrowse link
G Themis thymocyte selection associated IAGP MGI PMID:19597498 PMID:19620281 PMID:19805304 NCBI chr10:28,544,356...28,759,816
Ensembl chr10:28,544,356...28,759,814 		JBrowse link
G Tnfrsf25 tumor necrosis factor receptor superfamily, member 25 IAGP MGI PMID:11313471 NCBI chr 4:152,199,985...152,204,568
Ensembl chr 4:152,200,391...152,204,576 		JBrowse link
G Tnfrsf4 tumor necrosis factor receptor superfamily, member 4 IAGP MGI PMID:21435587 NCBI chr 4:156,098,049...156,101,070
Ensembl chr 4:156,098,300...156,101,069 		JBrowse link
G Traf3ip3 TRAF3 interacting protein 3 IAGP MGI PMID:26195727 NCBI chr 1:192,857,812...192,883,854
Ensembl chr 1:192,857,761...192,884,011 		JBrowse link
G Trbv13-2 T cell receptor beta, variable 13-2 IAGP MGI PMID:17410206 NCBI chr 6:41,098,330...41,098,766
Ensembl chr 6:41,098,330...41,098,766 		JBrowse link
G Trp53bp1 transformation related protein 53 binding protein 1 IAGP MGI PMID:12578828 NCBI chr 2:121,025,316...121,126,830
Ensembl chr 2:121,023,762...121,101,888 		JBrowse link
G Trpm7 transient receptor potential cation channel, subfamily M, member 7 IAGP MGI PMID:18974357 NCBI chr 2:126,633,478...126,718,181
Ensembl chr 2:126,633,485...126,718,150 		JBrowse link
G Tyk2 tyrosine kinase 2 IAGP MGI PMID:11070174 NCBI chr 9:21,015,364...21,042,689
Ensembl chr 9:21,015,364...21,042,539 		JBrowse link
G Vav1 vav 1 oncogene IAGP MGI PMID:9601639 PMID:11376343 NCBI chr17:57,586,080...57,636,236
Ensembl chr17:57,586,100...57,635,031 		JBrowse link
G Vav2 vav 2 oncogene IAGP MGI PMID:11376343 NCBI chr 2:27,152,116...27,317,620
Ensembl chr 2:27,152,116...27,317,045 		JBrowse link
G Wls wntless WNT ligand secretion mediator IAGP MGI PMID:23918954 NCBI chr 3:159,545,287...159,644,302
Ensembl chr 3:159,545,309...159,644,300 		JBrowse link
G Xist inactive X specific transcripts IAGP MGI PMID:16980619 NCBI chr  X:102,503,979...102,526,839
Ensembl chr  X:102,503,972...102,526,860 		JBrowse link
G Xrcc5 X-ray repair complementing defective repair in Chinese hamster cells 5 IEA MGI NCBI chr 1:72,346,576...72,434,112
Ensembl chr 1:72,346,586...72,434,111 		JBrowse link
G Xrcc6 X-ray repair complementing defective repair in Chinese hamster cells 6 IAGP MGI PMID:9390689 NCBI chr15:81,868,805...81,924,286
Ensembl chr15:81,872,036...81,924,286 		JBrowse link
G Zap70 zeta-chain (TCR) associated protein kinase IAGP MGI PMID:9794398 PMID:11567635 PMID:14647385 PMID:17767948 PMID:24164480 NCBI chr 1:36,800,912...36,821,899
Ensembl chr 1:36,800,879...36,821,899 		JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 IAGP MGI PMID:22201126 NCBI chr12:76,416,825...76,443,729
Ensembl chr12:76,417,040...76,443,724 		JBrowse link
G Zbtb7b zinc finger and BTB domain containing 7B IAGP MGI PMID:18776904 PMID:18776905 NCBI chr 3:89,284,953...89,300,976
Ensembl chr 3:89,284,951...89,302,083 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 IAGP MGI PMID:9126927 NCBI chr18:5,591,330...5,775,468
Ensembl chr18:5,591,860...5,775,467 		JBrowse link
G Zfp131 zinc finger protein 131 IAGP MGI PMID:26136427 NCBI chr13:120,226,722...120,253,070
Ensembl chr13:120,226,723...120,252,425 		JBrowse link
G Zfp335 zinc finger protein 335 IAGP MGI PMID:25343476 NCBI chr 2:164,733,802...164,756,034
Ensembl chr 2:164,733,802...164,753,677 		JBrowse link
abnormal CD4-positive T cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abat 4-aminobutyrate aminotransferase IAGP MGI PMID:36192601 NCBI chr16:8,331,293...8,439,432
Ensembl chr16:8,331,293...8,439,432 		JBrowse link
G Atm ataxia telangiectasia mutated IEA MGI NCBI chr 9:53,348,422...53,448,125
Ensembl chr 9:53,350,449...53,448,040 		JBrowse link
G B2m beta-2 microglobulin IAGP MGI PMID:7589135 NCBI chr 2:121,978,168...121,983,563
Ensembl chr 2:121,978,167...121,983,564 		JBrowse link
G Batf basic leucine zipper transcription factor, ATF-like IAGP MGI PMID:19578362 NCBI chr12:85,733,494...85,755,861
Ensembl chr12:85,733,443...85,755,861 		JBrowse link
G Bhlhe40 basic helix-loop-helix family, member e40 IAGP MGI PMID:11668339 NCBI chr 6:108,637,590...108,643,886
Ensembl chr 6:108,637,590...108,643,886 		JBrowse link
G Cbfb core binding factor beta IAGP MGI PMID:17646405 NCBI chr 8:105,897,306...105,944,621
Ensembl chr 8:105,897,306...105,944,621 		JBrowse link
G Cd1d1 CD1d1 antigen IAGP MGI PMID:21921158 NCBI chr 3:86,903,141...86,919,665
Ensembl chr 3:86,903,141...86,906,748 		JBrowse link
G Cd3e CD3 antigen, epsilon polypeptide IAGP MGI PMID:23267019 NCBI chr 9:44,910,033...44,920,961
Ensembl chr 9:44,910,038...44,920,925 		JBrowse link
G Cd83 CD83 antigen IAGP MGI PMID:11955430 PMID:15322158 NCBI chr13:43,938,661...43,956,608
Ensembl chr13:43,938,251...43,956,608 		JBrowse link
G Cd8a CD8 subunit alpha IAGP MGI PMID:12049716 NCBI chr 6:71,350,411...71,356,155
Ensembl chr 6:71,350,411...71,356,157 		JBrowse link
G Ciita class II transactivator IEA MGI NCBI chr16:10,297,877...10,348,928
Ensembl chr16:10,297,923...10,346,282 		JBrowse link
G Cish cytokine inducible SH2-containing protein IAGP MGI PMID:23727894 NCBI chr 9:107,173,858...107,179,983
Ensembl chr 9:107,173,225...107,179,983 		JBrowse link
G Clec4n C-type lectin domain family 4, member n IAGP MGI PMID:20493731 NCBI chr 6:123,206,802...123,223,983
Ensembl chr 6:123,206,802...123,223,980 		JBrowse link
G Csk c-src tyrosine kinase IAGP MGI PMID:9732874 NCBI chr 9:57,533,929...57,560,758
Ensembl chr 9:57,533,929...57,560,914 		JBrowse link
G Ctsl cathepsin L IEA MGI NCBI chr13:64,509,704...64,518,586
Ensembl chr13:64,507,151...64,518,704 		JBrowse link
G Dock2 dedicator of cyto-kinesis 2 IEA MGI NCBI chr11:34,176,815...34,674,732
Ensembl chr11:34,176,815...34,674,719 		JBrowse link
G Dock8 dedicator of cytokinesis 8 IEA MGI NCBI chr19:24,976,753...25,179,796
Ensembl chr19:24,976,898...25,179,796 		JBrowse link
G Elf4 E74 like ETS transcription factor 4 IAGP MGI PMID:35266071 NCBI chr  X:47,499,926...47,552,009
Ensembl chr  X:47,499,923...47,552,009 		JBrowse link
G Foxp3 forkhead box P3 IAGP MGI PMID:17581588 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484 		JBrowse link
G Gabrb3 GABRB3, gamma-aminobutyric acid type A receptor subunit beta 3 IAGP MGI PMID:36192601 NCBI chr 7:57,240,266...57,478,550
Ensembl chr 7:57,069,440...57,478,550 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:20123962 PMID:23293358 PMID:23727894 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294 		JBrowse link
G H2-Ab1 histocompatibility 2, class II antigen A, beta 1 IAGP MGI PMID:7547694 NCBI chr17:34,482,201...34,488,392
Ensembl chr17:34,476,663...34,488,393 		JBrowse link
G Il21r interleukin 21 receptor IAGP MGI PMID:17581588 PMID:18474630 PMID:18779574 NCBI chr 7:125,202,424...125,232,742
Ensembl chr 7:125,202,601...125,232,742 		JBrowse link
G Il23r interleukin 23 receptor IAGP MGI PMID:19414740 NCBI chr 6:67,399,906...67,468,838
Ensembl chr 6:67,399,916...67,468,839 		JBrowse link
G Il27 interleukin 27 IAGP MGI PMID:19380822 NCBI chr 7:126,188,181...126,194,197
Ensembl chr 7:126,188,182...126,194,113 		JBrowse link
G Il6 interleukin 6 IAGP MGI PMID:17581588 NCBI chr 5:30,218,112...30,224,973
Ensembl chr 5:30,218,112...30,224,979 		JBrowse link
G Il7r interleukin 7 receptor IAGP MGI PMID:23267098 NCBI chr15:9,505,880...9,530,270
Ensembl chr15:9,505,874...9,530,262 		JBrowse link
G Itk IL2 inducible T cell kinase IAGP MGI PMID:15345221 PMID:19009524 NCBI chr11:46,215,975...46,280,342
Ensembl chr11:46,215,977...46,280,342 		JBrowse link
G Jak3 Janus kinase 3 IEA MGI NCBI chr 8:72,129,027...72,143,221
Ensembl chr 8:72,128,940...72,143,219 		JBrowse link
G Ksr1 kinase suppressor of ras 1 IAGP MGI PMID:11940661 NCBI chr11:78,904,266...79,037,357
Ensembl chr11:78,904,266...79,037,233 		JBrowse link
G Lime1 Lck interacting transmembrane adaptor 1 IAGP MGI PMID:17918199 NCBI chr 2:181,023,028...181,025,421
Ensembl chr 2:181,021,871...181,025,421 		JBrowse link
G Lmbr1l limb region 1 like IAGP MGI PMID:31073040 NCBI chr15:98,801,798...98,815,944
Ensembl chr15:98,801,798...98,816,112 		JBrowse link
G Nckap1l NCK associated protein 1 like IAGP MGI PMID:19015308 NCBI chr15:103,362,219...103,411,288
Ensembl chr15:103,362,221...103,407,237 		JBrowse link
G Nfkb2 nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100 IEA MGI NCBI chr19:46,285,478...46,300,839
Ensembl chr19:46,292,759...46,300,824 		JBrowse link
G Pgam1 phosphoglycerate mutase 1 IAGP MGI PMID:32709928 NCBI chr19:41,900,310...41,907,104
Ensembl chr19:41,900,362...41,907,099 		JBrowse link
G Plcg1 phospholipase C, gamma 1 IAGP MGI PMID:20123962 NCBI chr 2:160,573,230...160,617,680
Ensembl chr 2:160,573,220...160,617,680 		JBrowse link
G Prkdc protein kinase, DNA activated, catalytic polypeptide IEA MGI NCBI chr16:15,455,698...15,660,103
Ensembl chr16:15,455,730...15,660,099 		JBrowse link
G Ptprc protein tyrosine phosphatase receptor type C IAGP MGI PMID:24068938 NCBI chr 1:137,990,601...138,103,491
Ensembl chr 1:137,990,599...138,103,446 		JBrowse link
G Rag1 recombination activating 1 IAGP MGI PMID:15345221 PMID:25343476 NCBI chr 2:101,468,597...101,479,877
Ensembl chr 2:101,468,627...101,479,846 		JBrowse link
G Rag2 recombination activating gene 2 IAGP MGI PMID:10843678 PMID:17918199 NCBI chr 2:101,455,057...101,462,873
Ensembl chr 2:101,455,063...101,462,874 		JBrowse link
G Rasgrp1 RAS guanyl releasing protein 1 IAGP MGI PMID:22719950 NCBI chr 2:117,110,464...117,173,358
Ensembl chr 2:117,110,474...117,173,482 		JBrowse link
G Rel reticuloendotheliosis oncogene IEA MGI NCBI chr11:23,686,847...23,720,969
Ensembl chr11:23,686,847...23,720,970 		JBrowse link
G Rftn1 raftlin lipid raft linker 1 IAGP MGI PMID:19414744 NCBI chr17:50,300,287...50,497,525
Ensembl chr17:50,299,285...50,497,702 		JBrowse link
G Runx1 runt related transcription factor 1 IAGP MGI PMID:17646406 NCBI chr16:92,398,354...92,622,962
Ensembl chr16:92,398,354...92,623,037 		JBrowse link
G Sash3 SAM and SH3 domain containing 3 IAGP MGI PMID:16227612 NCBI chr  X:47,235,313...47,250,442
Ensembl chr  X:47,235,313...47,250,442 		JBrowse link
G Smad3 SMAD family member 3 IAGP MGI PMID:18474630 NCBI chr 9:63,554,048...63,665,276
Ensembl chr 9:63,554,049...63,665,276 		JBrowse link
G Socs1 suppressor of cytokine signaling 1 IAGP MGI PMID:18322180 NCBI chr16:10,601,672...10,603,400
Ensembl chr16:10,600,104...10,603,400 		JBrowse link
G Stat1 signal transducer and activator of transcription 1 IEA MGI NCBI chr 1:52,158,588...52,201,024
Ensembl chr 1:52,158,599...52,201,024 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 IAGP MGI PMID:17581537 NCBI chr11:100,777,632...100,830,447
Ensembl chr11:100,775,924...100,830,366 		JBrowse link
G Stat4 signal transducer and activator of transcription 4 IAGP MGI PMID:19119024 NCBI chr 1:52,026,265...52,146,348
Ensembl chr 1:52,026,307...52,146,348 		JBrowse link
G Stat5a signal transducer and activator of transcription 5A IAGP MGI PMID:23727894 NCBI chr11:100,750,177...100,775,995
Ensembl chr11:100,750,177...100,775,995 		JBrowse link
G Stat5b signal transducer and activator of transcription 5B IAGP MGI PMID:23727894 NCBI chr11:100,671,557...100,741,407
Ensembl chr11:100,671,557...100,741,550 		JBrowse link
G Stat6 signal transducer and activator of transcription 6 IAGP MGI PMID:23727894 NCBI chr10:127,478,855...127,496,856
Ensembl chr10:127,478,855...127,496,826 		JBrowse link
G Stk4 serine/threonine kinase 4 IEA MGI NCBI chr 2:163,916,033...163,997,444
Ensembl chr 2:163,912,242...163,997,444 		JBrowse link
G Tbx21 T-box 21 IAGP MGI PMID:19119024 NCBI chr11:96,988,833...97,006,157
Ensembl chr11:96,988,897...97,006,157 		JBrowse link
G Themis thymocyte selection associated IEA MGI NCBI chr10:28,544,356...28,759,816
Ensembl chr10:28,544,356...28,759,814 		JBrowse link
G Tox thymocyte selection-associated high mobility group box IAGP MGI PMID:18195075 PMID:20818394 NCBI chr 4:6,686,353...6,991,557
Ensembl chr 4:6,686,353...6,991,557 		JBrowse link
G Tpp2 tripeptidyl peptidase II IAGP MGI PMID:25414442 NCBI chr 1:43,973,130...44,042,160
Ensembl chr 1:43,972,807...44,042,160 		JBrowse link
G Trmt61a tRNA methyltransferase 61A IAGP MGI PMID:36138184 NCBI chr12:111,644,539...111,650,336
Ensembl chr12:111,644,539...111,650,336 		JBrowse link
G Vav1 vav 1 oncogene IAGP MGI PMID:19009524 NCBI chr17:57,586,080...57,636,236
Ensembl chr17:57,586,100...57,635,031 		JBrowse link
G Zbtb7b zinc finger and BTB domain containing 7B IAGP MGI PMID:9653162 NCBI chr 3:89,284,953...89,300,976
Ensembl chr 3:89,284,951...89,302,083 		JBrowse link
G Zfp335 zinc finger protein 335 IAGP MGI PMID:25343476 NCBI chr 2:164,733,802...164,756,034
Ensembl chr 2:164,733,802...164,753,677 		JBrowse link
abnormal CD8-positive, alpha-beta T cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G 1700016L21Rik RIKEN cDNA 1700016L21 gene IAGP MGI PMID:12196292 NCBI chr 1:80,423,649...80,453,377
Ensembl chr 1:80,405,912...80,457,752 		JBrowse link
G Atm ataxia telangiectasia mutated IEA MGI NCBI chr 9:53,348,422...53,448,125
Ensembl chr 9:53,350,449...53,448,040 		JBrowse link
G B2m beta-2 microglobulin IAGP MGI PMID:18776905 PMID:19597498 NCBI chr 2:121,978,168...121,983,563
Ensembl chr 2:121,978,167...121,983,564 		JBrowse link
G Cbfb core binding factor beta IAGP MGI PMID:17646405 NCBI chr 8:105,897,306...105,944,621
Ensembl chr 8:105,897,306...105,944,621 		JBrowse link
G Cd3e CD3 antigen, epsilon polypeptide IEA MGI NCBI chr 9:44,910,033...44,920,961
Ensembl chr 9:44,910,038...44,920,925 		JBrowse link
G Cd8a CD8 subunit alpha IEA MGI NCBI chr 6:71,350,411...71,356,155
Ensembl chr 6:71,350,411...71,356,157 		JBrowse link
G Cd8b1 CD8 subunit beta 1 IAGP MGI PMID:8064243 NCBI chr 6:71,299,772...71,314,476
Ensembl chr 6:71,299,772...71,314,478 		JBrowse link
G Ciita class II transactivator IEA MGI NCBI chr16:10,297,877...10,348,928
Ensembl chr16:10,297,923...10,346,282 		JBrowse link
G Ctsl cathepsin L IEA MGI NCBI chr13:64,509,704...64,518,586
Ensembl chr13:64,507,151...64,518,704 		JBrowse link
G Dock2 dedicator of cyto-kinesis 2 IEA MGI NCBI chr11:34,176,815...34,674,732
Ensembl chr11:34,176,815...34,674,719 		JBrowse link
G Dock8 dedicator of cytokinesis 8 IEA MGI NCBI chr19:24,976,753...25,179,796
Ensembl chr19:24,976,898...25,179,796 		JBrowse link
G Eomes eomesodermin IAGP MGI PMID:18635804 NCBI chr 9:118,307,259...118,315,176
Ensembl chr 9:118,307,280...118,315,200 		JBrowse link
G Ets1 E26 avian leukemia oncogene 1, 5' domain IAGP MGI PMID:16818745 NCBI chr 9:32,547,501...32,669,116
Ensembl chr 9:32,547,517...32,669,116 		JBrowse link
G Gimap5 GTPase, IMAP family member 5 IAGP MGI PMID:18796632 NCBI chr 6:48,723,131...48,731,134
Ensembl chr 6:48,723,131...48,731,144 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:18354198 PMID:20123962 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294 		JBrowse link
G Ikbkb inhibitor of kappaB kinase beta IEA MGI NCBI chr 8:23,149,228...23,196,605
Ensembl chr 8:23,149,228...23,196,605 		JBrowse link
G Il15 interleukin 15 IAGP MGI PMID:16880398 NCBI chr 8:83,058,253...83,129,883
Ensembl chr 8:83,058,261...83,129,851 		JBrowse link
G Il2rb interleukin 2 receptor, beta chain IEA MGI NCBI chr15:78,363,456...78,396,569
Ensembl chr15:78,363,456...78,379,471 		JBrowse link
G Il7r interleukin 7 receptor IAGP MGI PMID:23267098 NCBI chr15:9,505,880...9,530,270
Ensembl chr15:9,505,874...9,530,262 		JBrowse link
G Inpp5d inositol polyphosphate-5-phosphatase D IEA MGI NCBI chr 1:87,548,034...87,648,232
Ensembl chr 1:87,548,034...87,648,229 		JBrowse link
G Itk IL2 inducible T cell kinase IAGP MGI PMID:16860759 PMID:16880398 PMID:19009524 NCBI chr11:46,215,975...46,280,342
Ensembl chr11:46,215,977...46,280,342 		JBrowse link
G Lmbr1l limb region 1 like IAGP MGI PMID:31073040 NCBI chr15:98,801,798...98,815,944
Ensembl chr15:98,801,798...98,816,112 		JBrowse link
G Nfkb2 nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100 IEA MGI NCBI chr19:46,285,478...46,300,839
Ensembl chr19:46,292,759...46,300,824 		JBrowse link
G Pgam1 phosphoglycerate mutase 1 IAGP MGI PMID:32709928 NCBI chr19:41,900,310...41,907,104
Ensembl chr19:41,900,362...41,907,099 		JBrowse link
G Plcg1 phospholipase C, gamma 1 IAGP MGI PMID:20123962 NCBI chr 2:160,573,230...160,617,680
Ensembl chr 2:160,573,220...160,617,680 		JBrowse link
G Prkdc protein kinase, DNA activated, catalytic polypeptide IEA MGI NCBI chr16:15,455,698...15,660,103
Ensembl chr16:15,455,730...15,660,099 		JBrowse link
G Ptger1 prostaglandin E receptor 1 (subtype EP1) IAGP MGI PMID:17967902 NCBI chr 8:84,393,171...84,399,385
Ensembl chr 8:84,393,307...84,399,382 		JBrowse link
G Ptpn6 protein tyrosine phosphatase, non-receptor type 6 IEA MGI NCBI chr 6:124,697,670...124,715,672
Ensembl chr 6:124,697,670...124,715,677 		JBrowse link
G Ptprc protein tyrosine phosphatase receptor type C IAGP MGI PMID:24068938 NCBI chr 1:137,990,601...138,103,491
Ensembl chr 1:137,990,599...138,103,446 		JBrowse link
G Rag1 recombination activating 1 IEA MGI NCBI chr 2:101,468,597...101,479,877
Ensembl chr 2:101,468,627...101,479,846 		JBrowse link
G Rasgrp1 RAS guanyl releasing protein 1 IAGP MGI PMID:22719950 NCBI chr 2:117,110,464...117,173,358
Ensembl chr 2:117,110,474...117,173,482 		JBrowse link
G Rorc RAR-related orphan receptor gamma IAGP MGI PMID:28846085 NCBI chr 3:94,280,106...94,305,583
Ensembl chr 3:94,280,101...94,305,583 		JBrowse link
G Runx1 runt related transcription factor 1 IAGP MGI PMID:17646406 NCBI chr16:92,398,354...92,622,962
Ensembl chr16:92,398,354...92,623,037 		JBrowse link
G Runx3 runt related transcription factor 3 IAGP MGI PMID:17646405 PMID:18776905 NCBI chr 4:134,847,956...134,905,301
Ensembl chr 4:134,847,963...134,905,301 		JBrowse link
G Sash3 SAM and SH3 domain containing 3 IAGP MGI PMID:16227612 NCBI chr  X:47,235,313...47,250,442
Ensembl chr  X:47,235,313...47,250,442 		JBrowse link
G Stat1 signal transducer and activator of transcription 1 IEA MGI NCBI chr 1:52,158,588...52,201,024
Ensembl chr 1:52,158,599...52,201,024 		JBrowse link
G Tbx21 T-box 21 IAGP MGI PMID:18635804 NCBI chr11:96,988,833...97,006,157
Ensembl chr11:96,988,897...97,006,157 		JBrowse link
G Themis thymocyte selection associated IAGP MGI PMID:19597498 NCBI chr10:28,544,356...28,759,816
Ensembl chr10:28,544,356...28,759,814 		JBrowse link
G Tpp2 tripeptidyl peptidase II IAGP MGI PMID:25414442 NCBI chr 1:43,973,130...44,042,160
Ensembl chr 1:43,972,807...44,042,160 		JBrowse link
G Vav1 vav 1 oncogene IAGP MGI PMID:19009524 NCBI chr17:57,586,080...57,636,236
Ensembl chr17:57,586,100...57,635,031 		JBrowse link
G Xrcc5 X-ray repair complementing defective repair in Chinese hamster cells 5 IEA MGI NCBI chr 1:72,346,576...72,434,112
Ensembl chr 1:72,346,586...72,434,111 		JBrowse link
G Zap70 zeta-chain (TCR) associated protein kinase IAGP MGI PMID:19841086 NCBI chr 1:36,800,912...36,821,899
Ensembl chr 1:36,800,879...36,821,899 		JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 IEA MGI NCBI chr12:76,416,825...76,443,729
Ensembl chr12:76,417,040...76,443,724 		JBrowse link
G Zbtb7b zinc finger and BTB domain containing 7B IAGP MGI PMID:18776905 NCBI chr 3:89,284,953...89,300,976
Ensembl chr 3:89,284,951...89,302,083 		JBrowse link
G Zfat zinc finger and AT hook domain containing IAGP MGI PMID:22828507 NCBI chr15:67,955,563...68,130,771
Ensembl chr15:67,955,613...68,130,705 		JBrowse link
G Zfp335 zinc finger protein 335 IAGP MGI PMID:25343476 NCBI chr 2:164,733,802...164,756,034
Ensembl chr 2:164,733,802...164,753,677 		JBrowse link
abnormal double-negative T cell morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aff1 AF4/FMR2 family, member 1 IAGP MGI PMID:12629167 NCBI chr 5:103,840,307...104,003,188
Ensembl chr 5:103,840,240...104,003,188 		JBrowse link
G Bmi1 Bmi1 polycomb ring finger oncogene IAGP MGI PMID:7926765 NCBI chr 2:18,681,953...18,691,440
Ensembl chr 2:18,681,829...18,691,440 		JBrowse link
G Card11 caspase recruitment domain family, member 11 IAGP MGI PMID:12867038 PMID:19260764 NCBI chr 5:140,858,109...140,986,398
Ensembl chr 5:140,858,745...140,986,337 		JBrowse link
G Cbl Casitas B-lineage lymphoma IAGP MGI PMID:16211006 NCBI chr 9:44,054,273...44,145,556
Ensembl chr 9:44,054,273...44,145,346 		JBrowse link
G Cd247 CD247 antigen IAGP MGI PMID:7520000 PMID:10072519 NCBI chr 1:165,607,514...165,698,722
Ensembl chr 1:165,616,250...165,704,846 		JBrowse link
G Cd3e CD3 antigen, epsilon polypeptide IAGP MGI PMID:11751756 PMID:16878135 NCBI chr 9:44,910,033...44,920,961
Ensembl chr 9:44,910,038...44,920,925 		JBrowse link
G Cd4 CD4 antigen IAGP MGI PMID:8500525 NCBI chr 6:124,841,656...124,865,210
Ensembl chr 6:124,841,655...124,865,184 		JBrowse link
G Cd8a CD8 subunit alpha IAGP MGI PMID:8500525 NCBI chr 6:71,350,411...71,356,155
Ensembl chr 6:71,350,411...71,356,157 		JBrowse link
G Dck deoxycytidine kinase IAGP MGI PMID:20080663 NCBI chr 5:88,912,872...88,931,136
Ensembl chr 5:88,912,855...88,931,140 		JBrowse link
G Fasl Fas ligand IAGP MGI PMID:14764677 NCBI chr 1:161,608,260...161,616,064
Ensembl chr 1:161,608,258...161,616,064 		JBrowse link
G Grap2 GRB2-related adaptor protein 2 IAGP MGI PMID:15265900 NCBI chr15:80,456,798...80,537,055
Ensembl chr15:80,456,795...80,537,055 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:17536012 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294 		JBrowse link
G Lat linker for activation of T cells IAGP MGI PMID:12065840 PMID:16878135 NCBI chr 7:125,962,999...125,968,877
Ensembl chr 7:125,962,996...125,968,742 		JBrowse link
G Lcp2 lymphocyte cytosolic protein 2 IAGP MGI PMID:18342008 NCBI chr11:33,996,928...34,042,281
Ensembl chr11:33,996,920...34,042,295 		JBrowse link
G Malt1 MALT1 paracaspase IAGP MGI PMID:14576442 NCBI chr18:65,564,010...65,612,138
Ensembl chr18:65,564,009...65,612,138 		JBrowse link
G Ncaph2 non-SMC condensin II complex, subunit H2 IAGP MGI PMID:17640884 NCBI chr15:89,239,920...89,257,030
Ensembl chr15:89,239,922...89,257,029 		JBrowse link
G Nfatc2 nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2 IAGP MGI PMID:17579027 NCBI chr 2:168,318,330...168,443,900
Ensembl chr 2:168,318,330...168,443,577 		JBrowse link
G Nfatc3 nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3 IAGP MGI PMID:17579027 NCBI chr 8:106,785,450...106,857,169
Ensembl chr 8:106,785,472...106,857,169 		JBrowse link
G Nfkbie nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon IAGP MGI PMID:10570287 NCBI chr17:45,866,626...45,874,095
Ensembl chr17:45,866,629...45,874,095 		JBrowse link
G Ptch1 patched 1 IAGP MGI PMID:17536012 NCBI chr13:63,656,142...63,721,274
Ensembl chr13:63,656,142...63,721,412 		JBrowse link
G Rag1 recombination activating 1 IAGP MGI PMID:7520000 PMID:15021880 NCBI chr 2:101,468,597...101,479,877
Ensembl chr 2:101,468,627...101,479,846 		JBrowse link
G Rag2 recombination activating gene 2 IAGP MGI PMID:15021880 PMID:17617584 NCBI chr 2:101,455,057...101,462,873
Ensembl chr 2:101,455,063...101,462,874 		JBrowse link
G Rhoh ras homolog family member H IAGP MGI PMID:17119112 NCBI chr 5:66,018,092...66,054,043
Ensembl chr 5:66,018,556...66,054,043 		JBrowse link
G Rictor RPTOR independent companion of MTOR, complex 2 IAGP MGI PMID:22815285 NCBI chr15:6,737,827...6,829,882
Ensembl chr15:6,737,860...6,829,882 		JBrowse link
G Shc1 src homology 2 domain-containing transforming protein C1 IAGP MGI PMID:12101399 NCBI chr 3:89,325,858...89,337,336
Ensembl chr 3:89,325,750...89,337,334 		JBrowse link
G Spi1 Spi-1 proto-oncogene IAGP MGI PMID:16311598 NCBI chr 2:90,912,750...90,946,104
Ensembl chr 2:90,912,735...90,946,101 		JBrowse link
G Stat5b signal transducer and activator of transcription 5B IAGP MGI PMID:9841920 NCBI chr11:100,671,557...100,741,407
Ensembl chr11:100,671,557...100,741,550 		JBrowse link
G Tcra T cell receptor alpha chain IAGP MGI PMID:17617584 PMID:18203137 NCBI chr14:52,665,424...54,461,655 JBrowse link
G Tcrb T cell receptor beta chain IAGP MGI PMID:17617584 PMID:19380806 NCBI chr 6:40,868,230...41,535,305 JBrowse link
G Tcrd T-cell receptor delta chain IAGP MGI PMID:16473278 PMID:18203137 NCBI chr14:54,183,530...54,396,655 JBrowse link
G Trdc T cell receptor delta, constant region IAGP MGI PMID:16878135 NCBI chr14:54,380,308...54,383,565
Ensembl chr14:54,380,308...54,386,325 		JBrowse link
G Trp53 transformation related protein 53 IAGP MGI PMID:16473278 NCBI chr11:69,471,174...69,482,699
Ensembl chr11:69,471,185...69,482,699 		JBrowse link
G Vav1 vav 1 oncogene IAGP MGI PMID:9354466 NCBI chr17:57,586,080...57,636,236
Ensembl chr17:57,586,100...57,635,031 		JBrowse link
G Was Wiskott-Aldrich syndrome IAGP MGI PMID:17878299 NCBI chr  X:7,947,705...7,956,730
Ensembl chr  X:7,947,692...7,956,737 		JBrowse link
G Wasl WASP like actin nucleation promoting factor IAGP MGI PMID:17878299 NCBI chr 6:24,613,809...24,665,185
Ensembl chr 6:24,613,804...24,665,008 		JBrowse link
G Zbtb7b zinc finger and BTB domain containing 7B IAGP MGI PMID:18776907 NCBI chr 3:89,284,953...89,300,976
Ensembl chr 3:89,284,951...89,302,083 		JBrowse link
G Zfp131 zinc finger protein 131 IAGP MGI PMID:26136427 NCBI chr13:120,226,722...120,253,070
Ensembl chr13:120,226,723...120,252,425 		JBrowse link
abnormal double-positive T cell morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B2m beta-2 microglobulin IAGP MGI PMID:18776905 NCBI chr 2:121,978,168...121,983,563
Ensembl chr 2:121,978,167...121,983,564 		JBrowse link
G Cbfb core binding factor beta IAGP MGI PMID:17646405 PMID:20360383 NCBI chr 8:105,897,306...105,944,621
Ensembl chr 8:105,897,306...105,944,621 		JBrowse link
G Cd3e CD3 antigen, epsilon polypeptide IAGP MGI PMID:23267019 NCBI chr 9:44,910,033...44,920,961
Ensembl chr 9:44,910,038...44,920,925 		JBrowse link
G Cd4 CD4 antigen IEA MGI NCBI chr 6:124,841,656...124,865,210
Ensembl chr 6:124,841,655...124,865,184 		JBrowse link
G Cd5l CD5 antigen-like IAGP MGI PMID:9892623 NCBI chr 3:87,265,188...87,278,381
Ensembl chr 3:87,265,188...87,278,380 		JBrowse link
G Cd8a CD8 subunit alpha IAGP MGI PMID:17082573 NCBI chr 6:71,350,411...71,356,155
Ensembl chr 6:71,350,411...71,356,157 		JBrowse link
G E2f1 E2F transcription factor 1 IAGP MGI PMID:8653790 PMID:15470032 NCBI chr 2:154,401,320...154,411,812
Ensembl chr 2:154,401,327...154,411,812 		JBrowse link
G Eef1a1 eukaryotic translation elongation factor 1 alpha 1 IAGP MGI PMID:19536265 NCBI chr 9:78,385,735...78,389,006
Ensembl chr 9:78,385,731...78,396,433 		JBrowse link
G Foxp3 forkhead box P3 IAGP MGI PMID:24164480 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484 		JBrowse link
G Gata3 GATA binding protein 3 IAGP MGI PMID:19934022 NCBI chr 2:9,861,889...9,894,845
Ensembl chr 2:9,861,889...9,894,845 		JBrowse link
G Id3 inhibitor of DNA binding 3 IAGP MGI PMID:10661402 NCBI chr 4:135,871,133...135,872,703
Ensembl chr 4:135,870,808...135,873,066 		JBrowse link
G Lcp2 lymphocyte cytosolic protein 2 IEA MGI NCBI chr11:33,996,928...34,042,281
Ensembl chr11:33,996,920...34,042,295 		JBrowse link
G Mapk1 mitogen-activated protein kinase 1 IAGP MGI PMID:16226508 NCBI chr16:16,801,246...16,865,317
Ensembl chr16:16,801,246...16,865,317 		JBrowse link
G Mcl1 myeloid cell leukemia sequence 1 IAGP MGI PMID:19234191 NCBI chr 3:95,564,017...95,583,553
Ensembl chr 3:95,566,099...95,570,487 		JBrowse link
G Prkdc protein kinase, DNA activated, catalytic polypeptide IAGP MGI PMID:8094405 NCBI chr16:15,455,698...15,660,103
Ensembl chr16:15,455,730...15,660,099 		JBrowse link
G Ptcra pre T cell antigen receptor alpha IAGP MGI PMID:17555992 NCBI chr17:47,066,589...47,074,659
Ensembl chr17:47,066,589...47,074,638 		JBrowse link
G Ptpn22 protein tyrosine phosphatase, non-receptor type 22 (lymphoid) IAGP MGI PMID:19299707 NCBI chr 3:103,763,891...103,819,568
Ensembl chr 3:103,767,111...103,819,563 		JBrowse link
G Ptprc protein tyrosine phosphatase receptor type C IAGP MGI PMID:19299707 NCBI chr 1:137,990,601...138,103,491
Ensembl chr 1:137,990,599...138,103,446 		JBrowse link
G Rag1 recombination activating 1 IAGP MGI PMID:15021880 NCBI chr 2:101,468,597...101,479,877
Ensembl chr 2:101,468,627...101,479,846 		JBrowse link
G Rag2 recombination activating gene 2 IAGP MGI PMID:9285410 PMID:15021880 PMID:17579027 NCBI chr 2:101,455,057...101,462,873
Ensembl chr 2:101,455,063...101,462,874 		JBrowse link
G Rasgrp1 RAS guanyl releasing protein 1 IAGP MGI PMID:24336796 NCBI chr 2:117,110,464...117,173,358
Ensembl chr 2:117,110,474...117,173,482 		JBrowse link
G Runx1 runt related transcription factor 1 IAGP MGI PMID:17646406 NCBI chr16:92,398,354...92,622,962
Ensembl chr16:92,398,354...92,623,037 		JBrowse link
G Runx3 runt related transcription factor 3 IAGP MGI PMID:18776905 NCBI chr 4:134,847,956...134,905,301
Ensembl chr 4:134,847,963...134,905,301 		JBrowse link
G Sla src-like adaptor IAGP MGI PMID:11567635 NCBI chr15:66,652,713...66,703,921
Ensembl chr15:66,652,668...66,703,678 		JBrowse link
G Tcra T cell receptor alpha chain IAGP MGI PMID:12049722 NCBI chr14:52,665,424...54,461,655 JBrowse link
G Tcrd T-cell receptor delta chain IAGP MGI PMID:12049722 NCBI chr14:54,183,530...54,396,655 JBrowse link
G Trp53 transformation related protein 53 IAGP MGI PMID:16473278 NCBI chr11:69,471,174...69,482,699
Ensembl chr11:69,471,185...69,482,699 		JBrowse link
G Was Wiskott-Aldrich syndrome IAGP MGI PMID:17878299 NCBI chr  X:7,947,705...7,956,730
Ensembl chr  X:7,947,692...7,956,737 		JBrowse link
G Wasl WASP like actin nucleation promoting factor IAGP MGI PMID:17878299 NCBI chr 6:24,613,809...24,665,185
Ensembl chr 6:24,613,804...24,665,008 		JBrowse link
G Zap70 zeta-chain (TCR) associated protein kinase IAGP MGI PMID:24164480 NCBI chr 1:36,800,912...36,821,899
Ensembl chr 1:36,800,879...36,821,899 		JBrowse link
G Zbtb7a zinc finger and BTB domain containing 7a IAGP MGI PMID:17495164 NCBI chr10:80,971,113...80,988,056
Ensembl chr10:80,971,054...80,988,829 		JBrowse link
G Zbtb7b zinc finger and BTB domain containing 7B IAGP MGI PMID:18776905 NCBI chr 3:89,284,953...89,300,976
Ensembl chr 3:89,284,951...89,302,083 		JBrowse link
abnormal gamma-delta T cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd247 CD247 antigen IAGP MGI PMID:22945921 NCBI chr 1:165,607,514...165,698,722
Ensembl chr 1:165,616,250...165,704,846 		JBrowse link
G Il2rg interleukin 2 receptor, gamma chain IAGP MGI PMID:9334367 NCBI chr  X:100,307,991...100,311,861
Ensembl chr  X:100,307,984...100,311,861 		JBrowse link
G Il7r interleukin 7 receptor IAGP MGI PMID:8692964 NCBI chr15:9,505,880...9,530,270
Ensembl chr15:9,505,874...9,530,262 		JBrowse link
G Jag2 jagged 2 IAGP MGI PMID:9531541 NCBI chr12:112,871,439...112,893,437
Ensembl chr12:112,871,439...112,893,396 		JBrowse link
G Lat linker for activation of T cells IAGP MGI PMID:12065839 PMID:12970761 NCBI chr 7:125,962,999...125,968,877
Ensembl chr 7:125,962,996...125,968,742 		JBrowse link
G Rag2 recombination activating gene 2 IAGP MGI PMID:12531919 NCBI chr 2:101,455,057...101,462,873
Ensembl chr 2:101,455,063...101,462,874 		JBrowse link
G Tcrd T-cell receptor delta chain IAGP MGI PMID:8381716 NCBI chr14:54,183,530...54,396,655 JBrowse link
G Tcrg T cell receptor gamma chain IAGP MGI PMID:11911829 NCBI chr13:19,362,212...19,540,646 JBrowse link
abnormal negative T cell selection term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Caml calcium modulating ligand IAGP MGI PMID:16111633 NCBI chr13:55,770,818...55,780,229
Ensembl chr13:55,770,818...55,780,224 		JBrowse link
G Ccl21a C-C motif chemokine ligand 21 (serine) IAGP MGI PMID:28611158 NCBI chr 4:42,772,860...42,773,991
Ensembl chr 4:42,772,860...42,773,993 		JBrowse link
G Cd3e CD3 antigen, epsilon polypeptide IAGP MGI PMID:23267019 NCBI chr 9:44,910,033...44,920,961
Ensembl chr 9:44,910,038...44,920,925 		JBrowse link
G Cd8b1 CD8 subunit beta 1 IAGP MGI PMID:7889415 NCBI chr 6:71,299,772...71,314,476
Ensembl chr 6:71,299,772...71,314,478 		JBrowse link
G Elavl1 ELAV like RNA binding protein 1 IAGP MGI PMID:19454673 NCBI chr 8:4,334,781...4,375,104
Ensembl chr 8:4,335,382...4,375,413 		JBrowse link
G H2-Ab1 histocompatibility 2, class II antigen A, beta 1 IAGP MGI PMID:19597498 NCBI chr17:34,482,201...34,488,392
Ensembl chr17:34,476,663...34,488,393 		JBrowse link
G Hcls1 hematopoietic cell specific Lyn substrate 1 IAGP MGI PMID:7641686 NCBI chr16:36,755,345...36,783,576
Ensembl chr16:36,755,345...36,783,574 		JBrowse link
G Il6st interleukin 6 signal transducer IAGP MGI PMID:12370259 NCBI chr13:112,600,604...112,643,394
Ensembl chr13:112,600,604...112,646,620 		JBrowse link
G Immp2l IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) IAGP MGI PMID:8786307 NCBI chr12:41,074,060...42,002,371
Ensembl chr12:41,074,089...42,002,371 		JBrowse link
G Lcp2 lymphocyte cytosolic protein 2 IAGP MGI PMID:18342008 NCBI chr11:33,996,928...34,042,281
Ensembl chr11:33,996,920...34,042,295 		JBrowse link
G Ptpn2 protein tyrosine phosphatase, non-receptor type 2 IAGP MGI PMID:22590589 NCBI chr18:67,798,571...67,857,697
Ensembl chr18:67,798,581...67,857,665 		JBrowse link
G Tapbp TAP binding protein IAGP MGI PMID:10981964 NCBI chr17:34,138,452...34,148,264
Ensembl chr17:34,134,873...34,148,266 		JBrowse link
G Tcra T cell receptor alpha chain IAGP MGI PMID:12049722 NCBI chr14:52,665,424...54,461,655 JBrowse link
G Tcrd T-cell receptor delta chain IAGP MGI PMID:12049722 NCBI chr14:54,183,530...54,396,655 JBrowse link
G Themis thymocyte selection associated IAGP MGI PMID:19597498 PMID:19597499 NCBI chr10:28,544,356...28,759,816
Ensembl chr10:28,544,356...28,759,814 		JBrowse link
G Tnfrsf11a tumor necrosis factor receptor superfamily, member 11a, NFKB activator IAGP MGI PMID:17502664 NCBI chr 1:105,708,443...105,777,172
Ensembl chr 1:105,708,443...105,775,709 		JBrowse link
G Tnfrsf25 tumor necrosis factor receptor superfamily, member 25 IAGP MGI PMID:11313471 NCBI chr 4:152,199,985...152,204,568
Ensembl chr 4:152,200,391...152,204,576 		JBrowse link
G Tnfsf10 tumor necrosis factor (ligand) superfamily, member 10 IAGP MGI PMID:12577054 NCBI chr 3:27,371,226...27,393,814
Ensembl chr 3:27,371,177...27,396,576 		JBrowse link
G Vav1 vav 1 oncogene IAGP MGI PMID:9354466 PMID:16169499 NCBI chr17:57,586,080...57,636,236
Ensembl chr17:57,586,100...57,635,031 		JBrowse link
abnormal positive T cell selection term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl11b B cell leukemia/lymphoma 11B IAGP MGI PMID:17998389 NCBI chr12:107,876,662...107,970,404
Ensembl chr12:107,876,662...107,969,861 		JBrowse link
G Caml calcium modulating ligand IAGP MGI PMID:16111633 NCBI chr13:55,770,818...55,780,229
Ensembl chr13:55,770,818...55,780,224 		JBrowse link
G Cd3e CD3 antigen, epsilon polypeptide IAGP MGI PMID:23267019 NCBI chr 9:44,910,033...44,920,961
Ensembl chr 9:44,910,038...44,920,925 		JBrowse link
G Cd74 CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated) IAGP MGI PMID:10843678 NCBI chr18:60,936,921...60,945,724
Ensembl chr18:60,936,920...60,945,724 		JBrowse link
G Cd8a CD8 subunit alpha IAGP MGI PMID:17082573 NCBI chr 6:71,350,411...71,356,155
Ensembl chr 6:71,350,411...71,356,157 		JBrowse link
G Cd8b1 CD8 subunit beta 1 IAGP MGI PMID:7889415 NCBI chr 6:71,299,772...71,314,476
Ensembl chr 6:71,299,772...71,314,478 		JBrowse link
G Dicer1 dicer 1, ribonuclease type III IAGP MGI PMID:22179202 NCBI chr12:104,654,001...104,718,331
Ensembl chr12:104,654,001...104,718,211 		JBrowse link
G Elavl1 ELAV like RNA binding protein 1 IAGP MGI PMID:19454673 NCBI chr 8:4,334,781...4,375,104
Ensembl chr 8:4,335,382...4,375,413 		JBrowse link
G Elk4 ELK4, member of ETS oncogene family IAGP MGI PMID:14770179 NCBI chr 1:131,935,129...131,954,186
Ensembl chr 1:131,935,345...131,960,350 		JBrowse link
G Foxn1 forkhead box N1 IAGP MGI PMID:22179202 NCBI chr11:78,248,403...78,277,597
Ensembl chr11:78,248,403...78,277,384 		JBrowse link
G Git2 GIT ArfGAP 2 IAGP MGI PMID:20431621 NCBI chr 5:114,865,469...114,912,647
Ensembl chr 5:114,865,468...114,913,578 		JBrowse link
G H2-DMa histocompatibility 2, class II, locus DMa IAGP MGI PMID:8638109 PMID:10843678 NCBI chr17:34,338,667...34,358,075
Ensembl chr17:34,338,515...34,358,075 		JBrowse link
G Hivep2 human immunodeficiency virus type I enhancer binding protein 2 IAGP MGI PMID:15699073 NCBI chr10:13,841,819...14,027,122
Ensembl chr10:13,841,819...14,027,118 		JBrowse link
G Immp2l IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) IAGP MGI PMID:8786307 NCBI chr12:41,074,060...42,002,371
Ensembl chr12:41,074,089...42,002,371 		JBrowse link
G Itk IL2 inducible T cell kinase IAGP MGI PMID:8777721 PMID:12055226 PMID:19009524 NCBI chr11:46,215,975...46,280,342
Ensembl chr11:46,215,977...46,280,342 		JBrowse link
G Lcp2 lymphocyte cytosolic protein 2 IAGP MGI PMID:18342008 NCBI chr11:33,996,928...34,042,281
Ensembl chr11:33,996,920...34,042,295 		JBrowse link
G Mapk1 mitogen-activated protein kinase 1 IAGP MGI PMID:16226508 NCBI chr16:16,801,246...16,865,317
Ensembl chr16:16,801,246...16,865,317 		JBrowse link
G Mapk3 mitogen-activated protein kinase 3 IAGP MGI PMID:16226508 NCBI chr 7:126,358,798...126,364,988
Ensembl chr 7:126,358,773...126,364,991 		JBrowse link
G Ppp3r1 protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I) IAGP MGI PMID:15030770 NCBI chr11:17,109,298...17,150,380
Ensembl chr11:17,109,263...17,150,375 		JBrowse link
G Ppp4c protein phosphatase 4, catalytic subunit IAGP MGI PMID:17060460 NCBI chr 7:126,385,038...126,391,729
Ensembl chr 7:126,385,038...126,391,668 		JBrowse link
G Prkch protein kinase C, eta IAGP MGI PMID:22155788 NCBI chr12:73,631,570...73,824,959
Ensembl chr12:73,631,570...73,824,959 		JBrowse link
G Prkcq protein kinase C, theta IAGP MGI PMID:22155788 NCBI chr 2:11,176,922...11,306,033
Ensembl chr 2:11,176,919...11,306,033 		JBrowse link
G Prss16 serine protease 16 (thymus) IAGP MGI PMID:19283781 NCBI chr13:22,186,346...22,193,911
Ensembl chr13:22,186,343...22,193,912 		JBrowse link
G Ptpn2 protein tyrosine phosphatase, non-receptor type 2 IAGP MGI PMID:22590589 NCBI chr18:67,798,571...67,857,697
Ensembl chr18:67,798,581...67,857,665 		JBrowse link
G Ptprc protein tyrosine phosphatase receptor type C IAGP MGI PMID:10508267 NCBI chr 1:137,990,601...138,103,491
Ensembl chr 1:137,990,599...138,103,446 		JBrowse link
G Rag2 recombination activating gene 2 IAGP MGI PMID:10843678 PMID:19283781 NCBI chr 2:101,455,057...101,462,873
Ensembl chr 2:101,455,063...101,462,874 		JBrowse link
G Rasgrp1 RAS guanyl releasing protein 1 IAGP MGI PMID:12932358 NCBI chr 2:117,110,464...117,173,358
Ensembl chr 2:117,110,474...117,173,482 		JBrowse link
G Sit1 suppression inducing transmembrane adaptor 1 IAGP MGI PMID:16107703 NCBI chr 4:43,482,083...43,483,709
Ensembl chr 4:43,482,081...43,483,734 		JBrowse link
G Sla src-like adaptor IAGP MGI PMID:11567635 NCBI chr15:66,652,713...66,703,921
Ensembl chr15:66,652,668...66,703,678 		JBrowse link
G Tapbp TAP binding protein IAGP MGI PMID:10981964 NCBI chr17:34,138,452...34,148,264
Ensembl chr17:34,134,873...34,148,266 		JBrowse link
G Tcra T cell receptor alpha chain IAGP MGI PMID:17998389 PMID:23853545 NCBI chr14:52,665,424...54,461,655 JBrowse link
G Themis thymocyte selection associated IAGP MGI PMID:19597498 PMID:19597499 NCBI chr10:28,544,356...28,759,816
Ensembl chr10:28,544,356...28,759,814 		JBrowse link
G Tox thymocyte selection-associated high mobility group box IAGP MGI PMID:20818394 NCBI chr 4:6,686,353...6,991,557
Ensembl chr 4:6,686,353...6,991,557 		JBrowse link
G Vav1 vav 1 oncogene IAGP MGI PMID:19009524 NCBI chr17:57,586,080...57,636,236
Ensembl chr17:57,586,100...57,635,031 		JBrowse link
G Zap70 zeta-chain (TCR) associated protein kinase IAGP MGI PMID:14647385 PMID:19841086 NCBI chr 1:36,800,912...36,821,899
Ensembl chr 1:36,800,879...36,821,899 		JBrowse link
abnormal T cell clonal deletion term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd28 CD28 antigen IAGP MGI PMID:11342622 NCBI chr 1:60,785,547...60,812,521
Ensembl chr 1:60,755,959...60,812,518 		JBrowse link
G Cd40lg CD40 ligand IAGP MGI PMID:11342622 NCBI chr  X:56,257,448...56,269,402
Ensembl chr  X:56,257,503...56,269,402 		JBrowse link
G Cd5 CD5 antigen IAGP MGI PMID:11342622 NCBI chr19:10,695,471...10,716,390
Ensembl chr19:10,694,480...10,716,366 		JBrowse link
G Fas Fas cell surface death receptor IAGP MGI PMID:8700897 NCBI chr19:34,267,926...34,305,175
Ensembl chr19:34,268,066...34,305,172 		JBrowse link
G Fyn Fyn proto-oncogene IAGP MGI PMID:1387588 NCBI chr10:39,245,735...39,441,377
Ensembl chr10:39,244,851...39,441,377 		JBrowse link
G Il2rb interleukin 2 receptor, beta chain IAGP MGI PMID:12196288 NCBI chr15:78,363,456...78,396,569
Ensembl chr15:78,363,456...78,379,471 		JBrowse link
G Il6st interleukin 6 signal transducer IAGP MGI PMID:12370259 NCBI chr13:112,600,604...112,643,394
Ensembl chr13:112,600,604...112,646,620 		JBrowse link
G Trap1a tumor rejection antigen P1A IAGP MGI PMID:22140254 NCBI chr  X:138,234,432...138,238,918
Ensembl chr  X:138,234,432...138,238,918 		JBrowse link
G Zap70 zeta-chain (TCR) associated protein kinase IAGP MGI PMID:19841086 NCBI chr 1:36,800,912...36,821,899
Ensembl chr 1:36,800,879...36,821,899 		JBrowse link
abnormal T cell receptor alpha chain V-J recombination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prkdc protein kinase, DNA activated, catalytic polypeptide IAGP MGI PMID:9768755 NCBI chr16:15,455,698...15,660,103
Ensembl chr16:15,455,730...15,660,099 		JBrowse link
abnormal T cell receptor beta chain V(D)J recombination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl11b B cell leukemia/lymphoma 11B IAGP MGI PMID:12717433 NCBI chr12:107,876,662...107,970,404
Ensembl chr12:107,876,662...107,969,861 		JBrowse link
G Cpa3 carboxypeptidase A3, mast cell IAGP MGI PMID:19110448 NCBI chr 3:20,269,780...20,296,373
Ensembl chr 3:20,269,784...20,296,345 		JBrowse link
G Dclre1c DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae) IAGP MGI PMID:19349461 NCBI chr 2:3,425,112...3,475,248
Ensembl chr 2:3,425,168...3,465,167 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:19110448 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294 		JBrowse link
G Lig4 ligase IV, DNA, ATP-dependent IAGP MGI PMID:20133615 NCBI chr 8:10,020,020...10,027,680
Ensembl chr 8:10,019,049...10,027,686 		JBrowse link
G Notch1 notch 1 IAGP MGI PMID:19110448 NCBI chr 2:26,347,914...26,393,834
Ensembl chr 2:26,347,915...26,406,675 		JBrowse link
G Prkdc protein kinase, DNA activated, catalytic polypeptide IAGP MGI PMID:9768755 PMID:9768756 PMID:9990036 NCBI chr16:15,455,698...15,660,103
Ensembl chr16:15,455,730...15,660,099 		JBrowse link
G Rag1 recombination activating 1 IAGP MGI PMID:19126872 NCBI chr 2:101,468,597...101,479,877
Ensembl chr 2:101,468,627...101,479,846 		JBrowse link
G Tcrb T cell receptor beta chain IAGP MGI PMID:12530977 PMID:18250443 PMID:19070901 PMID:19380806 NCBI chr 6:40,868,230...41,535,305 JBrowse link
G Upf2 UPF2 regulator of nonsense transcripts homolog (yeast) IAGP MGI PMID:18483223 NCBI chr 2:5,956,218...6,061,514
Ensembl chr 2:5,956,280...6,061,514 		JBrowse link
abnormal T cell receptor delta chain V(D)J recombination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lat linker for activation of T cells IAGP MGI PMID:19701892 NCBI chr 7:125,962,999...125,968,877
Ensembl chr 7:125,962,996...125,968,742 		JBrowse link
G Prkdc protein kinase, DNA activated, catalytic polypeptide IAGP MGI PMID:9768755 PMID:9990036 NCBI chr16:15,455,698...15,660,103
Ensembl chr16:15,455,730...15,660,099 		JBrowse link
G Rag2 recombination activating gene 2 IAGP MGI PMID:17579065 NCBI chr 2:101,455,057...101,462,873
Ensembl chr 2:101,455,063...101,462,874 		JBrowse link
G Rnf168 ring finger protein 168 IAGP MGI PMID:21552324 NCBI chr16:32,096,279...32,120,260
Ensembl chr16:32,096,277...32,120,252 		JBrowse link
abnormal T cell receptor gamma chain V-J recombination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lat linker for activation of T cells IAGP MGI PMID:19701892 NCBI chr 7:125,962,999...125,968,877
Ensembl chr 7:125,962,996...125,968,742 		JBrowse link
G Tcrd T-cell receptor delta chain IAGP MGI PMID:11911829 NCBI chr14:54,183,530...54,396,655 JBrowse link
G Tcrg T cell receptor gamma chain IAGP MGI PMID:11911829 PMID:18378791 NCBI chr13:19,362,212...19,540,646 JBrowse link
abnormal T cell receptor V(D)J recombination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cadm1 cell adhesion molecule 1 IAGP MGI PMID:22084409 NCBI chr 9:47,441,468...47,773,578
Ensembl chr 9:47,441,471...47,769,413 		JBrowse link
G Dclre1c DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae) IAGP MGI PMID:23207905 NCBI chr 2:3,425,112...3,475,248
Ensembl chr 2:3,425,168...3,465,167 		JBrowse link
G Ercc6l2 excision repair cross-complementing rodent repair deficiency, complementation group 6 like 2 IAGP MGI PMID:32355287 NCBI chr13:63,958,793...64,048,116
Ensembl chr13:63,963,054...64,048,116 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:18354198 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294 		JBrowse link
G Lig4 ligase IV, DNA, ATP-dependent IAGP MGI PMID:20133615 NCBI chr 8:10,020,020...10,027,680
Ensembl chr 8:10,019,049...10,027,686 		JBrowse link
G Nhej1 non-homologous end joining factor 1 IAGP MGI PMID:23207905 PMID:32355287 NCBI chr 1:75,006,505...75,101,870
Ensembl chr 1:75,006,298...75,101,844 		JBrowse link
G Nudcd3 NudC domain containing 3 IAGP MGI PMID:38787962 NCBI chr11:6,055,705...6,150,190
Ensembl chr11:6,055,691...6,150,415 		JBrowse link
G Prkdc protein kinase, DNA activated, catalytic polypeptide IAGP MGI PMID:9768756 NCBI chr16:15,455,698...15,660,103
Ensembl chr16:15,455,730...15,660,099 		JBrowse link
G Psmb11 proteasome (prosome, macropain) subunit, beta type, 11 IAGP MGI PMID:23569244 NCBI chr14:54,862,767...54,867,013
Ensembl chr14:54,858,890...54,867,013 		JBrowse link
G Psmb8 proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7) IAGP MGI PMID:23569244 NCBI chr17:34,417,169...34,420,428
Ensembl chr17:34,416,695...34,420,428 		JBrowse link
G Rag1 recombination activating 1 IAGP MGI PMID:1547488 PMID:9584189 PMID:19126872 NCBI chr 2:101,468,597...101,479,877
Ensembl chr 2:101,468,627...101,479,846 		JBrowse link
G Rag2 recombination activating gene 2 IAGP MGI PMID:1547487 NCBI chr 2:101,455,057...101,462,873
Ensembl chr 2:101,455,063...101,462,874 		JBrowse link
G Trp53 transformation related protein 53 IAGP MGI PMID:23207905 NCBI chr11:69,471,174...69,482,699
Ensembl chr11:69,471,185...69,482,699 		JBrowse link
abnormal T cell selection term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elk4 ELK4, member of ETS oncogene family IAGP MGI PMID:14770179 NCBI chr 1:131,935,129...131,954,186
Ensembl chr 1:131,935,345...131,960,350 		JBrowse link
G Lat linker for activation of T cells IAGP MGI PMID:12065839 NCBI chr 7:125,962,999...125,968,877
Ensembl chr 7:125,962,996...125,968,742 		JBrowse link
G Lrrc8a leucine rich repeat containing 8A VRAC subunit A IAGP MGI PMID:24752297 NCBI chr 2:30,127,781...30,153,802
Ensembl chr 2:30,127,727...30,153,802 		JBrowse link
G Ptprc protein tyrosine phosphatase receptor type C IEA MGI NCBI chr 1:137,990,601...138,103,491
Ensembl chr 1:137,990,599...138,103,446 		JBrowse link
G Sit1 suppression inducing transmembrane adaptor 1 IAGP MGI PMID:16107703 NCBI chr 4:43,482,083...43,483,709
Ensembl chr 4:43,482,081...43,483,734 		JBrowse link
G Zap70 zeta-chain (TCR) associated protein kinase IAGP MGI PMID:14647385 NCBI chr 1:36,800,912...36,821,899
Ensembl chr 1:36,800,879...36,821,899 		JBrowse link
abnormal T follicular helper cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl6 B cell leukemia/lymphoma 6 IAGP MGI PMID:23980208 NCBI chr16:23,780,058...23,807,602
Ensembl chr16:23,783,802...23,807,602 		JBrowse link
G Prdm1 PR domain containing 1, with ZNF domain IAGP MGI PMID:21948081 NCBI chr10:44,313,170...44,404,579
Ensembl chr10:44,313,173...44,404,497 		JBrowse link
G Rinl Ras and Rab interactor-like IAGP MGI PMID:37703004 NCBI chr 7:28,488,186...28,498,390
Ensembl chr 7:28,488,394...28,498,388 		JBrowse link
abnormal T-helper 1 cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abat 4-aminobutyrate aminotransferase IAGP MGI PMID:36192601 NCBI chr16:8,331,293...8,439,432
Ensembl chr16:8,331,293...8,439,432 		JBrowse link
G Cbfb core binding factor beta IAGP MGI PMID:17646405 NCBI chr 8:105,897,306...105,944,621
Ensembl chr 8:105,897,306...105,944,621 		JBrowse link
G Cd247 CD247 antigen IAGP MGI PMID:22945921 NCBI chr 1:165,607,514...165,698,722
Ensembl chr 1:165,616,250...165,704,846 		JBrowse link
G Cd274 CD274 antigen IAGP MGI PMID:20639491 NCBI chr19:29,339,428...29,365,495
Ensembl chr19:29,344,855...29,365,495 		JBrowse link
G Efnb1 ephrin B1 IAGP MGI PMID:21976681 NCBI chr  X:98,179,667...98,192,628
Ensembl chr  X:98,179,736...98,192,597 		JBrowse link
G Efnb2 ephrin B2 IAGP MGI PMID:21976681 NCBI chr 8:8,667,235...8,711,242
Ensembl chr 8:8,667,434...8,711,242 		JBrowse link
G Gadd45b growth arrest and DNA-damage-inducible 45 beta IAGP MGI PMID:14691480 NCBI chr10:80,765,925...80,768,038
Ensembl chr10:80,765,907...80,768,038 		JBrowse link
G Gadd45g growth arrest and DNA-damage-inducible 45 gamma IAGP MGI PMID:14691480 NCBI chr13:52,000,711...52,002,511
Ensembl chr13:52,000,714...52,002,504 		JBrowse link
G Gpr174 G protein-coupled receptor 174 IAGP MGI PMID:26077720 NCBI chr  X:106,299,484...106,340,377
Ensembl chr  X:106,299,484...106,340,375 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:21468021 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294 		JBrowse link
G Ifngr2 interferon gamma receptor 2 IAGP MGI PMID:9653170 NCBI chr16:91,343,947...91,360,895
Ensembl chr16:91,343,960...91,362,511 		JBrowse link
G Il10 interleukin 10 IAGP MGI PMID:16778988 NCBI chr 1:130,947,459...130,952,707
Ensembl chr 1:130,947,582...130,952,711 		JBrowse link
G Il4 interleukin 4 IAGP MGI PMID:16778988 NCBI chr11:53,503,287...53,509,492
Ensembl chr11:53,493,809...53,509,496 		JBrowse link
G Irf4 interferon regulatory factor 4 IAGP MGI PMID:12189207 NCBI chr13:30,933,191...30,950,965
Ensembl chr13:30,933,209...30,950,959 		JBrowse link
G Map4k3 mitogen-activated protein kinase kinase kinase kinase 3 IAGP MGI PMID:21983831 NCBI chr17:80,887,942...81,039,118
Ensembl chr17:80,887,941...81,035,914 		JBrowse link
G Mapk11 mitogen-activated protein kinase 11 IEA MGI NCBI chr15:89,026,685...89,033,809
Ensembl chr15:89,026,689...89,033,831 		JBrowse link
G Mapk14 mitogen-activated protein kinase 14 IEA MGI NCBI chr17:28,910,316...28,967,379
Ensembl chr17:28,910,303...28,967,380 		JBrowse link
G Mapk8 mitogen-activated protein kinase 8 IAGP MGI PMID:9851932 NCBI chr14:33,099,855...33,169,213
Ensembl chr14:33,099,855...33,169,115 		JBrowse link
G Mapk9 mitogen-activated protein kinase 9 IAGP MGI PMID:9806643 NCBI chr11:49,737,558...49,777,248
Ensembl chr11:49,737,578...49,777,248 		JBrowse link
G Myd88 myeloid differentiation primary response gene 88 IAGP MGI PMID:18656388 NCBI chr 9:119,165,000...119,169,084
Ensembl chr 9:119,165,000...119,170,477 		JBrowse link
G Nbr1 NBR1, autophagy cargo receptor IAGP MGI PMID:20808283 NCBI chr11:101,442,933...101,472,777
Ensembl chr11:101,442,975...101,472,777 		JBrowse link
G Nr4a2 nuclear receptor subfamily 4, group A, member 2 IAGP MGI PMID:21468021 NCBI chr 2:56,996,845...57,014,152
Ensembl chr 2:56,996,842...57,014,015 		JBrowse link
G Pcsk1 proprotein convertase subtilisin/kexin type 1 IAGP MGI PMID:22396549 NCBI chr13:75,237,407...75,282,980
Ensembl chr13:75,237,945...75,282,980 		JBrowse link
G Prkcq protein kinase C, theta IAGP MGI PMID:15528385 NCBI chr 2:11,176,922...11,306,033
Ensembl chr 2:11,176,919...11,306,033 		JBrowse link
G Ptger1 prostaglandin E receptor 1 (subtype EP1) IAGP MGI PMID:17967902 NCBI chr 8:84,393,171...84,399,385
Ensembl chr 8:84,393,307...84,399,382 		JBrowse link
G Rel reticuloendotheliosis oncogene IAGP MGI PMID:12235116 NCBI chr11:23,686,847...23,720,969
Ensembl chr11:23,686,847...23,720,970 		JBrowse link
G Sema4a sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A IAGP MGI PMID:15780988 NCBI chr 3:88,343,266...88,368,500
Ensembl chr 3:88,343,266...88,368,489 		JBrowse link
G Sit1 suppression inducing transmembrane adaptor 1 IAGP MGI PMID:16107703 NCBI chr 4:43,482,083...43,483,709
Ensembl chr 4:43,482,081...43,483,734 		JBrowse link
G Slc1a5 solute carrier family 1 (neutral amino acid transporter), member 5 IAGP MGI PMID:24792914 NCBI chr 7:16,515,259...16,532,199
Ensembl chr 7:16,515,265...16,532,199 		JBrowse link
G Smad7 SMAD family member 7 IAGP MGI PMID:20354004 NCBI chr18:75,500,436...75,529,006
Ensembl chr18:75,500,600...75,529,006 		JBrowse link
G Stat6 signal transducer and activator of transcription 6 IAGP MGI PMID:8602264 PMID:9834104 NCBI chr10:127,478,855...127,496,856
Ensembl chr10:127,478,855...127,496,826 		JBrowse link
G Tbx21 T-box 21 IAGP MGI PMID:11786644 NCBI chr11:96,988,833...97,006,157
Ensembl chr11:96,988,897...97,006,157 		JBrowse link
G Tnfrsf4 tumor necrosis factor receptor superfamily, member 4 IAGP MGI PMID:20808283 NCBI chr 4:156,098,049...156,101,070
Ensembl chr 4:156,098,300...156,101,069 		JBrowse link
G Unc93b1 unc-93 homolog B1, TLR signaling regulator IAGP MGI PMID:21683627 NCBI chr19:3,985,222...3,999,340
Ensembl chr19:3,985,186...3,999,340 		JBrowse link
abnormal T-helper 17 cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abat 4-aminobutyrate aminotransferase IAGP MGI PMID:36192601 NCBI chr16:8,331,293...8,439,432
Ensembl chr16:8,331,293...8,439,432 		JBrowse link
G Ackr4 atypical chemokine receptor 4 IAGP MGI PMID:20562329 NCBI chr 9:103,974,881...104,003,842
Ensembl chr 9:103,961,356...104,004,132 		JBrowse link
G B9d2 B9 protein domain 2 IAGP MGI PMID:21435587 NCBI chr 7:25,380,205...25,385,987
Ensembl chr 7:25,380,205...25,385,983 		JBrowse link
G Cd4 CD4 antigen IAGP MGI PMID:33238133 NCBI chr 6:124,841,656...124,865,210
Ensembl chr 6:124,841,655...124,865,184 		JBrowse link
G Efnb1 ephrin B1 IAGP MGI PMID:21976681 NCBI chr  X:98,179,667...98,192,628
Ensembl chr  X:98,179,736...98,192,597 		JBrowse link
G Efnb2 ephrin B2 IAGP MGI PMID:21976681 NCBI chr 8:8,667,235...8,711,242
Ensembl chr 8:8,667,434...8,711,242 		JBrowse link
G Gabrb3 GABRB3, gamma-aminobutyric acid type A receptor subunit beta 3 IAGP MGI PMID:36192601 NCBI chr 7:57,240,266...57,478,550
Ensembl chr 7:57,069,440...57,478,550 		JBrowse link
G Gfm1 G elongation factor, mitochondrial 1 IAGP MGI PMID:33238133 NCBI chr 3:67,337,448...67,382,401
Ensembl chr 3:67,337,429...67,383,862 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:21468021 PMID:23966625 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294 		JBrowse link
G Map4k3 mitogen-activated protein kinase kinase kinase kinase 3 IAGP MGI PMID:21983831 NCBI chr17:80,887,942...81,039,118
Ensembl chr17:80,887,941...81,035,914 		JBrowse link
G Mapk11 mitogen-activated protein kinase 11 IEA MGI NCBI chr15:89,026,685...89,033,809
Ensembl chr15:89,026,689...89,033,831 		JBrowse link
G Mapk14 mitogen-activated protein kinase 14 IEA MGI NCBI chr17:28,910,316...28,967,379
Ensembl chr17:28,910,303...28,967,380 		JBrowse link
G Mir155 microRNA 155 IAGP MGI PMID:26163372 NCBI chr16:84,511,028...84,511,092
Ensembl chr16:84,511,028...84,511,092 		JBrowse link
G Nr4a2 nuclear receptor subfamily 4, group A, member 2 IAGP MGI PMID:21468021 NCBI chr 2:56,996,845...57,014,152
Ensembl chr 2:56,996,842...57,014,015 		JBrowse link
G Otud5 OTU domain containing 5 IAGP MGI PMID:25470037 NCBI chr  X:7,705,852...7,742,861
Ensembl chr  X:7,707,603...7,742,865 		JBrowse link
G Pparg peroxisome proliferator activated receptor gamma IAGP MGI PMID:19737866 NCBI chr 6:115,337,828...115,467,365
Ensembl chr 6:115,337,912...115,467,360 		JBrowse link
G Rorc RAR-related orphan receptor gamma IAGP MGI PMID:28846085 NCBI chr 3:94,280,106...94,305,583
Ensembl chr 3:94,280,101...94,305,583 		JBrowse link
G Slc1a5 solute carrier family 1 (neutral amino acid transporter), member 5 IAGP MGI PMID:24792914 NCBI chr 7:16,515,259...16,532,199
Ensembl chr 7:16,515,265...16,532,199 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 IAGP MGI PMID:21435587 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502 		JBrowse link
G Unc93b1 unc-93 homolog B1, TLR signaling regulator IAGP MGI PMID:21683627 NCBI chr19:3,985,222...3,999,340
Ensembl chr19:3,985,186...3,999,340 		JBrowse link
abnormal T-helper 2 cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Batf basic leucine zipper transcription factor, ATF-like IAGP MGI PMID:20421391 NCBI chr12:85,733,494...85,755,861
Ensembl chr12:85,733,443...85,755,861 		JBrowse link
G Bhlhe41 basic helix-loop-helix family, member e41 IAGP MGI PMID:19881507 NCBI chr 6:145,803,969...145,811,146
Ensembl chr 6:145,803,969...145,811,284 		JBrowse link
G C3ar1 complement component 3a receptor 1 IAGP MGI PMID:12421977 NCBI chr 6:122,824,099...122,833,116
Ensembl chr 6:122,824,097...122,833,120 		JBrowse link
G Card11 caspase recruitment domain family, member 11 IAGP MGI PMID:16751370 NCBI chr 5:140,858,109...140,986,398
Ensembl chr 5:140,858,745...140,986,337 		JBrowse link
G Cblb Casitas B-lineage lymphoma b IAGP MGI PMID:19009524 NCBI chr16:51,851,593...52,028,410
Ensembl chr16:51,851,588...52,028,411 		JBrowse link
G Cish cytokine inducible SH2-containing protein IAGP MGI PMID:23727894 NCBI chr 9:107,173,858...107,179,983
Ensembl chr 9:107,173,225...107,179,983 		JBrowse link
G Col10a1 collagen, type X, alpha 1 IAGP MGI PMID:22692895 NCBI chr10:34,265,977...34,273,081
Ensembl chr10:34,265,977...34,273,081 		JBrowse link
G Foxp3 forkhead box P3 IAGP MGI PMID:24135136 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484 		JBrowse link
G Icosl icos ligand IAGP MGI PMID:12833154 NCBI chr10:77,904,921...77,915,359
Ensembl chr10:77,905,136...77,919,747 		JBrowse link
G Il10 interleukin 10 IAGP MGI PMID:16778988 NCBI chr 1:130,947,459...130,952,707
Ensembl chr 1:130,947,582...130,952,711 		JBrowse link
G Il12b interleukin 12b IAGP MGI PMID:16778988 NCBI chr11:44,290,890...44,305,504
Ensembl chr11:44,290,890...44,304,860 		JBrowse link
G Il13 interleukin 13 IAGP MGI PMID:9768762 NCBI chr11:53,522,150...53,525,529
Ensembl chr11:53,522,151...53,525,529 		JBrowse link
G Il17ra interleukin 17 receptor A IAGP MGI PMID:20154671 NCBI chr 6:120,440,143...120,460,692
Ensembl chr 6:120,440,208...120,464,520 		JBrowse link
G Il4 interleukin 4 IAGP MGI PMID:18719110 NCBI chr11:53,503,287...53,509,492
Ensembl chr11:53,493,809...53,509,496 		JBrowse link
G Itch itchy, E3 ubiquitin protein ligase IAGP MGI PMID:24135136 NCBI chr 2:154,975,401...155,068,775
Ensembl chr 2:154,975,429...155,068,775 		JBrowse link
G Itk IL2 inducible T cell kinase IAGP MGI PMID:19009524 NCBI chr11:46,215,975...46,280,342
Ensembl chr11:46,215,977...46,280,342 		JBrowse link
G Map4k3 mitogen-activated protein kinase kinase kinase kinase 3 IAGP MGI PMID:21983831 NCBI chr17:80,887,942...81,039,118
Ensembl chr17:80,887,941...81,035,914 		JBrowse link
G Mapk11 mitogen-activated protein kinase 11 IEA MGI NCBI chr15:89,026,685...89,033,809
Ensembl chr15:89,026,689...89,033,831 		JBrowse link
G Mapk14 mitogen-activated protein kinase 14 IEA MGI NCBI chr17:28,910,316...28,967,379
Ensembl chr17:28,910,303...28,967,380 		JBrowse link
G Nbr1 NBR1, autophagy cargo receptor IAGP MGI PMID:20808283 NCBI chr11:101,442,933...101,472,777
Ensembl chr11:101,442,975...101,472,777 		JBrowse link
G Pbrm1 polybromo 1 IAGP MGI PMID:22336179 NCBI chr14:30,741,095...30,843,549
Ensembl chr14:30,741,095...30,843,549 		JBrowse link
G Pgap3 post-GPI attachment to proteins 3 IAGP MGI PMID:23864655 NCBI chr11:98,279,498...98,292,022
Ensembl chr11:98,279,503...98,291,316 		JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region IAGP MGI PMID:15137944 NCBI chr 5:53,713,121...53,814,787
Ensembl chr 5:53,623,494...53,814,704 		JBrowse link
G Rsad2 radical S-adenosyl methionine domain containing 2 IAGP MGI PMID:19047684 NCBI chr12:26,492,742...26,506,451
Ensembl chr12:26,492,745...26,506,451 		JBrowse link
G Slc1a5 solute carrier family 1 (neutral amino acid transporter), member 5 IAGP MGI PMID:24792914 NCBI chr 7:16,515,259...16,532,199
Ensembl chr 7:16,515,265...16,532,199 		JBrowse link
G Stat6 signal transducer and activator of transcription 6 IAGP MGI PMID:8602264 PMID:8624821 PMID:18719110 NCBI chr10:127,478,855...127,496,856
Ensembl chr10:127,478,855...127,496,826 		JBrowse link
G Tnfrsf4 tumor necrosis factor receptor superfamily, member 4 IAGP MGI PMID:20808283 NCBI chr 4:156,098,049...156,101,070
Ensembl chr 4:156,098,300...156,101,069 		JBrowse link
G Tslp thymic stromal lymphopoietin IAGP MGI PMID:22585305 NCBI chr18:32,948,436...32,952,852
Ensembl chr18:32,948,436...32,952,850 		JBrowse link
arrested T cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt1 thymoma viral proto-oncogene 1 IAGP MGI PMID:17442925 NCBI chr12:112,620,260...112,641,266
Ensembl chr12:112,620,255...112,641,318 		JBrowse link
G Akt2 thymoma viral proto-oncogene 2 IAGP MGI PMID:17442925 NCBI chr 7:27,290,977...27,340,251
Ensembl chr 7:27,290,977...27,340,251 		JBrowse link
G Akt3 thymoma viral proto-oncogene 3 IAGP MGI PMID:17442925 NCBI chr 1:176,847,642...177,091,688
Ensembl chr 1:176,847,639...177,085,769 		JBrowse link
G Apc APC, WNT signaling pathway regulator IAGP MGI PMID:16025118 NCBI chr18:34,353,350...34,455,243
Ensembl chr18:34,353,977...34,455,605 		JBrowse link
G B2m beta-2 microglobulin IAGP MGI PMID:9103418 NCBI chr 2:121,978,168...121,983,563
Ensembl chr 2:121,978,167...121,983,564 		JBrowse link
G Carm1 coactivator-associated arginine methyltransferase 1 IAGP MGI PMID:19897492 NCBI chr 9:21,458,163...21,500,763
Ensembl chr 9:21,458,190...21,503,919 		JBrowse link
G Cbx2 chromobox 2 IAGP MGI PMID:9043087 NCBI chr11:118,913,845...118,922,101
Ensembl chr11:118,913,788...118,922,096 		JBrowse link
G Cd1d1 CD1d1 antigen IAGP MGI PMID:11550008 NCBI chr 3:86,903,141...86,919,665
Ensembl chr 3:86,903,141...86,906,748 		JBrowse link
G Cd3d CD3 antigen, delta polypeptide IAGP MGI PMID:9135151 NCBI chr 9:44,893,067...44,898,350
Ensembl chr 9:44,893,084...44,898,637 		JBrowse link
G Cd3e CD3 antigen, epsilon polypeptide IAGP MGI PMID:9843989 PMID:11751756 PMID:12065839 NCBI chr 9:44,910,033...44,920,961
Ensembl chr 9:44,910,038...44,920,925 		JBrowse link
G Cd83 CD83 antigen IAGP MGI PMID:11955430 NCBI chr13:43,938,661...43,956,608
Ensembl chr13:43,938,251...43,956,608 		JBrowse link
G Cdkn1a cyclin dependent kinase inhibitor 1A IAGP MGI PMID:21258009 NCBI chr17:29,309,953...29,319,696
Ensembl chr17:29,309,950...29,319,701 		JBrowse link
G Chd4 chromodomain helicase DNA binding protein 4 IAGP MGI PMID:15189737 NCBI chr 6:125,073,144...125,107,554
Ensembl chr 6:125,072,944...125,107,554 		JBrowse link
G Commd10 COMM domain containing 10 IAGP MGI PMID:21258009 NCBI chr18:47,091,917...47,242,435
Ensembl chr18:47,091,883...47,367,351 		JBrowse link
G Dclre1c DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae) IAGP MGI PMID:12504013 PMID:15699179 PMID:18501428 PMID:19692705 NCBI chr 2:3,425,112...3,475,248
Ensembl chr 2:3,425,168...3,465,167 		JBrowse link
G Fbxw7 F-box and WD-40 domain protein 7 IAGP MGI PMID:17984302 NCBI chr 3:84,721,901...84,886,505
Ensembl chr 3:84,722,575...84,886,505 		JBrowse link
G Fyn Fyn proto-oncogene IAGP MGI PMID:8934569 PMID:8934570 NCBI chr10:39,245,735...39,441,377
Ensembl chr10:39,244,851...39,441,377 		JBrowse link
G Gata3 GATA binding protein 3 IAGP MGI PMID:14670303 NCBI chr 2:9,861,889...9,894,845
Ensembl chr 2:9,861,889...9,894,845 		JBrowse link
G Gfi1 growth factor independent 1 transcription repressor IAGP MGI PMID:17116877 NCBI chr 5:107,864,521...107,873,671
Ensembl chr 5:107,864,523...107,873,902 		JBrowse link
G Grap2 GRB2-related adaptor protein 2 IAGP MGI PMID:11239162 NCBI chr15:80,456,798...80,537,055
Ensembl chr15:80,456,795...80,537,055 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:16951689 PMID:17923094 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294 		JBrowse link
G Hdac1 histone deacetylase 1 IAGP MGI PMID:23287868 NCBI chr 4:129,409,897...129,436,516
Ensembl chr 4:129,409,897...129,436,506 		JBrowse link
G Hdac2 histone deacetylase 2 IAGP MGI PMID:23287868 NCBI chr10:36,850,293...36,877,885
Ensembl chr10:36,850,540...36,877,885 		JBrowse link
G Ikzf1 IKAROS family zinc finger 1 IAGP MGI PMID:7923373 PMID:12479824 NCBI chr11:11,634,970...11,722,930
Ensembl chr11:11,634,980...11,722,926 		JBrowse link
G Il2rg interleukin 2 receptor, gamma chain IAGP MGI PMID:15024050 NCBI chr  X:100,307,991...100,311,861
Ensembl chr  X:100,307,984...100,311,861 		JBrowse link
G Il7r interleukin 7 receptor IAGP MGI PMID:7964471 NCBI chr15:9,505,880...9,530,270
Ensembl chr15:9,505,874...9,530,262 		JBrowse link
G Itpkb inositol 1,4,5-trisphosphate 3-kinase B IAGP MGI PMID:14517551 PMID:15064401 NCBI chr 1:180,156,655...180,252,367
Ensembl chr 1:180,158,050...180,252,367 		JBrowse link
G Itpkc inositol 1,4,5-trisphosphate 3-kinase C IAGP MGI PMID:14517551 NCBI chr 7:26,906,595...26,928,042
Ensembl chr 7:26,906,597...26,928,086 		JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase IAGP MGI PMID:15024050 NCBI chr 5:75,735,647...75,817,382
Ensembl chr 5:75,735,576...75,817,382 		JBrowse link
G Lat linker for activation of T cells IAGP MGI PMID:10204488 PMID:12065839 PMID:12871507 PMID:12970761 PMID:15153499 More... NCBI chr 7:125,962,999...125,968,877
Ensembl chr 7:125,962,996...125,968,742 		JBrowse link
G Lcp2 lymphocyte cytosolic protein 2 IAGP MGI PMID:19380761 NCBI chr11:33,996,928...34,042,281
Ensembl chr11:33,996,920...34,042,295 		JBrowse link
G Lig4 ligase IV, DNA, ATP-dependent IAGP MGI PMID:9823897 NCBI chr 8:10,020,020...10,027,680
Ensembl chr 8:10,019,049...10,027,686 		JBrowse link
G Mcl1 myeloid cell leukemia sequence 1 IAGP MGI PMID:14668867 NCBI chr 3:95,564,017...95,583,553
Ensembl chr 3:95,566,099...95,570,487 		JBrowse link
G Ncor1 nuclear receptor co-repressor 1 IAGP MGI PMID:11030619 NCBI chr11:62,207,132...62,348,200
Ensembl chr11:62,207,252...62,349,367 		JBrowse link
G Nkap NFKB activating protein IAGP MGI PMID:19409814 NCBI chr  X:36,390,416...36,414,399
Ensembl chr  X:36,390,448...36,414,399 		JBrowse link
G Noc2l NOC2 like nucleolar associated transcriptional repressor IAGP MGI PMID:25201955 NCBI chr 4:156,319,112...156,332,078
Ensembl chr 4:156,320,376...156,332,073 		JBrowse link
G Notch1 notch 1 IAGP MGI PMID:17261636 NCBI chr 2:26,347,914...26,393,834
Ensembl chr 2:26,347,915...26,406,675 		JBrowse link
G Notch2 notch 2 IAGP MGI PMID:17261636 NCBI chr 3:97,920,854...98,057,683
Ensembl chr 3:97,920,843...98,057,677 		JBrowse link
G Prkdc protein kinase, DNA activated, catalytic polypeptide IAGP MGI PMID:9103418 PMID:9768755 PMID:9768756 NCBI chr16:15,455,698...15,660,103
Ensembl chr16:15,455,730...15,660,099 		JBrowse link
G Ptcra pre T cell antigen receptor alpha IAGP MGI PMID:15197172 NCBI chr17:47,066,589...47,074,659
Ensembl chr17:47,066,589...47,074,638 		JBrowse link
G Ptprc protein tyrosine phosphatase receptor type C IAGP MGI PMID:20346773 NCBI chr 1:137,990,601...138,103,491
Ensembl chr 1:137,990,599...138,103,446 		JBrowse link
G Rag1 recombination activating 1 IAGP MGI PMID:16169499 PMID:18684012 PMID:19126872 PMID:36037073 NCBI chr 2:101,468,597...101,479,877
Ensembl chr 2:101,468,627...101,479,846 		JBrowse link
G Rag2 recombination activating gene 2 IAGP MGI PMID:1547487 PMID:9341770 PMID:11602643 PMID:12531919 PMID:12618483 More... NCBI chr 2:101,455,057...101,462,873
Ensembl chr 2:101,455,063...101,462,874 		JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region IAGP MGI PMID:12039915 PMID:17591855 NCBI chr 5:53,713,121...53,814,787
Ensembl chr 5:53,623,494...53,814,704 		JBrowse link
G Rhoh ras homolog family member H IAGP MGI PMID:17028588 NCBI chr 5:66,018,092...66,054,043
Ensembl chr 5:66,018,556...66,054,043 		JBrowse link
G Rpl22 ribosomal protein L22 IAGP MGI PMID:17555992 NCBI chr 4:152,408,893...152,418,539
Ensembl chr 4:152,410,199...152,418,528 		JBrowse link
G Runx1 runt related transcription factor 1 IAGP MGI PMID:17646406 PMID:17994017 NCBI chr16:92,398,354...92,622,962
Ensembl chr16:92,398,354...92,623,037 		JBrowse link
G Satb1 special AT-rich sequence binding protein 1 IAGP MGI PMID:10716941 NCBI chr17:52,043,215...52,140,318
Ensembl chr17:52,043,215...52,140,318 		JBrowse link
G Slc46a2 solute carrier family 46, member 2 IAGP MGI PMID:18684012 NCBI chr 4:59,905,899...59,915,056
Ensembl chr 4:59,905,126...59,915,056 		JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 IAGP MGI PMID:12932351 NCBI chr 9:21,527,377...21,615,526
Ensembl chr 9:21,527,465...21,615,526 		JBrowse link
G Tcf12 transcription factor 12 IAGP MGI PMID:10958665 NCBI chr 9:71,751,534...72,019,611
Ensembl chr 9:71,749,970...72,019,153 		JBrowse link
G Tcra T cell receptor alpha chain IAGP MGI PMID:1359428 PMID:17442925 PMID:23853545 NCBI chr14:52,665,424...54,461,655 JBrowse link
G Tcrb T cell receptor beta chain IAGP MGI PMID:1359428 PMID:10850719 NCBI chr 6:40,868,230...41,535,305 JBrowse link
G Tcrd T-cell receptor delta chain IAGP MGI PMID:1359428 NCBI chr14:54,183,530...54,396,655 JBrowse link
G Themis thymocyte selection associated IAGP MGI PMID:19597497 NCBI chr10:28,544,356...28,759,816
Ensembl chr10:28,544,356...28,759,814 		JBrowse link
G Tnfsf11 tumor necrosis factor (ligand) superfamily, member 11 IAGP MGI PMID:9950424 NCBI chr14:78,514,886...78,545,483
Ensembl chr14:78,514,885...78,545,483 		JBrowse link
G Tox thymocyte selection-associated high mobility group box IAGP MGI PMID:18195075 NCBI chr 4:6,686,353...6,991,557
Ensembl chr 4:6,686,353...6,991,557 		JBrowse link
G Vav1 vav 1 oncogene IAGP MGI PMID:14623913 PMID:16169499 NCBI chr17:57,586,080...57,636,236
Ensembl chr17:57,586,100...57,635,031 		JBrowse link
G Vav2 vav 2 oncogene IAGP MGI PMID:14623913 NCBI chr 2:27,152,116...27,317,620
Ensembl chr 2:27,152,116...27,317,045 		JBrowse link
G Vav3 vav 3 oncogene IAGP MGI PMID:14623913 NCBI chr 3:109,247,757...109,593,010
Ensembl chr 3:109,247,969...109,593,014 		JBrowse link
G Xrcc5 X-ray repair complementing defective repair in Chinese hamster cells 5 IAGP MGI PMID:8756720 NCBI chr 1:72,346,576...72,434,112
Ensembl chr 1:72,346,586...72,434,111 		JBrowse link
G Zap70 zeta-chain (TCR) associated protein kinase IAGP MGI PMID:9208839 PMID:9794398 NCBI chr 1:36,800,912...36,821,899
Ensembl chr 1:36,800,879...36,821,899 		JBrowse link
G Zbtb17 zinc finger and BTB domain containing 17 IAGP MGI PMID:21258009 NCBI chr 4:141,171,984...141,195,248
Ensembl chr 4:141,171,965...141,195,241 		JBrowse link
G Zfp131 zinc finger protein 131 IAGP MGI PMID:26136427 NCBI chr13:120,226,722...120,253,070
Ensembl chr13:120,226,723...120,252,425 		JBrowse link
decreased DN1 thymic pro-T cell number term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arhgap45 Rho GTPase activating protein 45 IAGP MGI PMID:33719206 NCBI chr10:79,852,505...79,867,305
Ensembl chr10:79,852,487...79,867,306 		JBrowse link
G Cdk6 cyclin dependent kinase 6 IAGP MGI PMID:21508411 NCBI chr 5:3,391,004...3,581,008
Ensembl chr 5:3,391,485...3,581,008 		JBrowse link
G Commd10 COMM domain containing 10 IAGP MGI PMID:21258009 NCBI chr18:47,091,917...47,242,435
Ensembl chr18:47,091,883...47,367,351 		JBrowse link
G Dclre1c DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae) IAGP MGI PMID:24069355 NCBI chr 2:3,425,112...3,475,248
Ensembl chr 2:3,425,168...3,465,167 		JBrowse link
G Gmnn geminin IAGP MGI PMID:20107189 NCBI chr13:24,935,828...24,954,222
Ensembl chr13:24,935,828...24,945,906 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 IAGP MGI PMID:21093323 NCBI chr16:29,883,259...29,886,614
Ensembl chr16:29,883,202...29,886,614 		JBrowse link
G Ikzf1 IKAROS family zinc finger 1 IAGP MGI PMID:24013668 NCBI chr11:11,634,970...11,722,930
Ensembl chr11:11,634,980...11,722,926 		JBrowse link
G Mcm4 minichromosome maintenance complex component 4 IAGP MGI PMID:23133403 NCBI chr16:15,441,761...15,455,264
Ensembl chr16:15,441,761...15,455,264 		JBrowse link
G Prkch protein kinase C, eta IAGP MGI PMID:22155788 NCBI chr12:73,631,570...73,824,959
Ensembl chr12:73,631,570...73,824,959 		JBrowse link
G Prkcq protein kinase C, theta IAGP MGI PMID:22155788 NCBI chr 2:11,176,922...11,306,033
Ensembl chr 2:11,176,919...11,306,033 		JBrowse link
G Rictor RPTOR independent companion of MTOR, complex 2 IAGP MGI PMID:22815285 NCBI chr15:6,737,827...6,829,882
Ensembl chr15:6,737,860...6,829,882 		JBrowse link
G Snrnp40 small nuclear ribonucleoprotein 40 (U5) IAGP MGI PMID:31427773 NCBI chr 4:130,253,925...130,283,826
Ensembl chr 4:130,253,925...130,283,819 		JBrowse link
G Syk spleen tyrosine kinase IAGP MGI PMID:22728826 NCBI chr13:52,736,670...52,802,828
Ensembl chr13:52,737,209...52,802,828 		JBrowse link
G Zbtb17 zinc finger and BTB domain containing 17 IAGP MGI PMID:21258009 NCBI chr 4:141,171,984...141,195,248
Ensembl chr 4:141,171,965...141,195,241 		JBrowse link
decreased DN2 thymocyte number term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl11a BCL11 transcription factor A IAGP MGI PMID:23230003 NCBI chr11:24,026,498...24,123,558
Ensembl chr11:24,028,056...24,124,123 		JBrowse link
G Cdk6 cyclin dependent kinase 6 IAGP MGI PMID:21508411 NCBI chr 5:3,391,004...3,581,008
Ensembl chr 5:3,391,485...3,581,008 		JBrowse link
G Commd10 COMM domain containing 10 IAGP MGI PMID:21258009 NCBI chr18:47,091,917...47,242,435
Ensembl chr18:47,091,883...47,367,351 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:23230003 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 IAGP MGI PMID:21093323 NCBI chr16:29,883,259...29,886,614
Ensembl chr16:29,883,202...29,886,614 		JBrowse link
G Ikzf1 IKAROS family zinc finger 1 IAGP MGI PMID:24013668 NCBI chr11:11,634,970...11,722,930
Ensembl chr11:11,634,980...11,722,926 		JBrowse link
G Lrrc8a leucine rich repeat containing 8A VRAC subunit A IAGP MGI PMID:24752297 NCBI chr 2:30,127,781...30,153,802
Ensembl chr 2:30,127,727...30,153,802 		JBrowse link
G Msi2 musashi RNA-binding protein 2 IAGP MGI PMID:21613258 NCBI chr11:88,230,208...88,609,197
Ensembl chr11:88,230,208...88,609,339 		JBrowse link
G Phf6 PHD finger protein 6 IAGP MGI PMID:30755422 NCBI chr  X:52,001,091...52,045,838
Ensembl chr  X:52,001,143...52,045,820 		JBrowse link
G Prnp prion protein IAGP MGI PMID:16517717 NCBI chr 2:131,751,848...131,780,356
Ensembl chr 2:131,751,848...131,780,349 		JBrowse link
G Rictor RPTOR independent companion of MTOR, complex 2 IAGP MGI PMID:22815285 NCBI chr15:6,737,827...6,829,882
Ensembl chr15:6,737,860...6,829,882 		JBrowse link
G Tle4 transducin-like enhancer of split 4 IAGP MGI PMID:25153823 NCBI chr19:14,425,434...14,575,542
Ensembl chr19:14,425,514...14,575,415 		JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 IAGP MGI PMID:22201126 NCBI chr12:76,416,825...76,443,729
Ensembl chr12:76,417,040...76,443,724 		JBrowse link
G Zbtb17 zinc finger and BTB domain containing 17 IAGP MGI PMID:21258009 NCBI chr 4:141,171,984...141,195,248
Ensembl chr 4:141,171,965...141,195,241 		JBrowse link
G Zfp131 zinc finger protein 131 IAGP MGI PMID:26136427 NCBI chr13:120,226,722...120,253,070
Ensembl chr13:120,226,723...120,252,425 		JBrowse link
decreased DN3 thymocyte number term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Commd10 COMM domain containing 10 IAGP MGI PMID:21258009 NCBI chr18:47,091,917...47,242,435
Ensembl chr18:47,091,883...47,367,351 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 IAGP MGI PMID:21093323 NCBI chr16:29,883,259...29,886,614
Ensembl chr16:29,883,202...29,886,614 		JBrowse link
G Ikzf1 IKAROS family zinc finger 1 IAGP MGI PMID:24013668 NCBI chr11:11,634,970...11,722,930
Ensembl chr11:11,634,980...11,722,926 		JBrowse link
G Lrrc8a leucine rich repeat containing 8A VRAC subunit A IAGP MGI PMID:24752297 NCBI chr 2:30,127,781...30,153,802
Ensembl chr 2:30,127,727...30,153,802 		JBrowse link
G Msi2 musashi RNA-binding protein 2 IAGP MGI PMID:21613258 NCBI chr11:88,230,208...88,609,197
Ensembl chr11:88,230,208...88,609,339 		JBrowse link
G Noc2l NOC2 like nucleolar associated transcriptional repressor IAGP MGI PMID:25201955 NCBI chr 4:156,319,112...156,332,078
Ensembl chr 4:156,320,376...156,332,073 		JBrowse link
G Rictor RPTOR independent companion of MTOR, complex 2 IAGP MGI PMID:22815285 NCBI chr15:6,737,827...6,829,882
Ensembl chr15:6,737,860...6,829,882 		JBrowse link
G Tsc22d3 TSC22 domain family, member 3 IAGP MGI PMID:22556341 NCBI chr  X:139,440,277...139,501,257
Ensembl chr  X:139,440,277...139,501,408 		JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 IAGP MGI PMID:22201126 NCBI chr12:76,416,825...76,443,729
Ensembl chr12:76,417,040...76,443,724 		JBrowse link
G Zbtb17 zinc finger and BTB domain containing 17 IAGP MGI PMID:21258009 NCBI chr 4:141,171,984...141,195,248
Ensembl chr 4:141,171,965...141,195,241 		JBrowse link
G Zfp131 zinc finger protein 131 IAGP MGI PMID:26136427 NCBI chr13:120,226,722...120,253,070
Ensembl chr13:120,226,723...120,252,425 		JBrowse link
decreased DN4 thymocyte number term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk6 cyclin dependent kinase 6 IAGP MGI PMID:21508411 NCBI chr 5:3,391,004...3,581,008
Ensembl chr 5:3,391,485...3,581,008 		JBrowse link
G Dclre1c DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae) IAGP MGI PMID:24069355 NCBI chr 2:3,425,112...3,475,248
Ensembl chr 2:3,425,168...3,465,167 		JBrowse link
G Efnb1 ephrin B1 IAGP MGI PMID:21976681 NCBI chr  X:98,179,667...98,192,628
Ensembl chr  X:98,179,736...98,192,597 		JBrowse link
G Efnb2 ephrin B2 IAGP MGI PMID:21976681 NCBI chr 8:8,667,235...8,711,242
Ensembl chr 8:8,667,434...8,711,242 		JBrowse link
G Gmnn geminin IAGP MGI PMID:20107189 NCBI chr13:24,935,828...24,954,222
Ensembl chr13:24,935,828...24,945,906 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 IAGP MGI PMID:21093323 NCBI chr16:29,883,259...29,886,614
Ensembl chr16:29,883,202...29,886,614 		JBrowse link
G Lrrc8a leucine rich repeat containing 8A VRAC subunit A IAGP MGI PMID:24752297 NCBI chr 2:30,127,781...30,153,802
Ensembl chr 2:30,127,727...30,153,802 		JBrowse link
G Nkap NFKB activating protein IAGP MGI PMID:19409814 NCBI chr  X:36,390,416...36,414,399
Ensembl chr  X:36,390,448...36,414,399 		JBrowse link
G Nmt1 N-myristoyltransferase 1 IAGP MGI PMID:26423150 NCBI chr11:102,919,163...102,959,734
Ensembl chr11:102,919,016...102,959,738 		JBrowse link
G Nmt2 N-myristoyltransferase 2 IAGP MGI PMID:26423150 NCBI chr 2:3,285,249...3,329,914
Ensembl chr 2:3,285,249...3,329,914 		JBrowse link
G Noc2l NOC2 like nucleolar associated transcriptional repressor IAGP MGI PMID:25201955 NCBI chr 4:156,319,112...156,332,078
Ensembl chr 4:156,320,376...156,332,073 		JBrowse link
G Pole3 polymerase (DNA directed), epsilon 3 (p17 subunit) IAGP MGI PMID:32553171 NCBI chr 4:62,440,889...62,443,305
Ensembl chr 4:62,440,886...62,443,305 		JBrowse link
G Prkch protein kinase C, eta IAGP MGI PMID:22155788 NCBI chr12:73,631,570...73,824,959
Ensembl chr12:73,631,570...73,824,959 		JBrowse link
G Prkcq protein kinase C, theta IAGP MGI PMID:22155788 NCBI chr 2:11,176,922...11,306,033
Ensembl chr 2:11,176,919...11,306,033 		JBrowse link
G Prnp prion protein IAGP MGI PMID:16517717 NCBI chr 2:131,751,848...131,780,356
Ensembl chr 2:131,751,848...131,780,349 		JBrowse link
G Ptcra pre T cell antigen receptor alpha IAGP MGI PMID:17555992 PMID:23509324 NCBI chr17:47,066,589...47,074,659
Ensembl chr17:47,066,589...47,074,638 		JBrowse link
G Ptprc protein tyrosine phosphatase receptor type C IAGP MGI PMID:24068938 NCBI chr 1:137,990,601...138,103,491
Ensembl chr 1:137,990,599...138,103,446 		JBrowse link
G Rictor RPTOR independent companion of MTOR, complex 2 IAGP MGI PMID:22815285 NCBI chr15:6,737,827...6,829,882
Ensembl chr15:6,737,860...6,829,882 		JBrowse link
G Septin9 septin 9 IAGP MGI PMID:23644740 NCBI chr11:117,090,487...117,253,151
Ensembl chr11:117,090,487...117,253,151 		JBrowse link
G Snrnp40 small nuclear ribonucleoprotein 40 (U5) IAGP MGI PMID:31427773 NCBI chr 4:130,253,925...130,283,826
Ensembl chr 4:130,253,925...130,283,819 		JBrowse link
G Sos1 SOS Ras/Rac guanine nucleotide exchange factor 1 IAGP MGI PMID:21746917 NCBI chr17:80,701,181...80,787,882
Ensembl chr17:80,701,180...80,787,882 		JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 IAGP MGI PMID:22201126 NCBI chr12:76,416,825...76,443,729
Ensembl chr12:76,417,040...76,443,724 		JBrowse link
G Zfp131 zinc finger protein 131 IAGP MGI PMID:26136427 NCBI chr13:120,226,722...120,253,070
Ensembl chr13:120,226,723...120,252,425 		JBrowse link
decreased double-negative T cell number term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl11b B cell leukemia/lymphoma 11B IAGP MGI PMID:17998389 NCBI chr12:107,876,662...107,970,404
Ensembl chr12:107,876,662...107,969,861 		JBrowse link
G Birc5 baculoviral IAP repeat-containing 5 IAGP MGI PMID:14757745 NCBI chr11:117,740,063...117,746,569
Ensembl chr11:117,740,077...117,746,569 		JBrowse link
G Cdk6 cyclin dependent kinase 6 IAGP MGI PMID:19155308 NCBI chr 5:3,391,004...3,581,008
Ensembl chr 5:3,391,485...3,581,008 		JBrowse link
G Chek2 checkpoint kinase 2 IAGP MGI PMID:16357220 NCBI chr 5:110,987,668...111,022,006
Ensembl chr 5:110,987,845...111,022,011 		JBrowse link
G Commd10 COMM domain containing 10 IAGP MGI PMID:21258009 NCBI chr18:47,091,917...47,242,435
Ensembl chr18:47,091,883...47,367,351 		JBrowse link
G Cpa3 carboxypeptidase A3, mast cell IAGP MGI PMID:19110448 NCBI chr 3:20,269,780...20,296,373
Ensembl chr 3:20,269,784...20,296,345 		JBrowse link
G Fas Fas cell surface death receptor IAGP MGI PMID:9109438 PMID:16973389 NCBI chr19:34,267,926...34,305,175
Ensembl chr19:34,268,066...34,305,172 		JBrowse link
G Fbxw7 F-box and WD-40 domain protein 7 IAGP MGI PMID:18474632 NCBI chr 3:84,721,901...84,886,505
Ensembl chr 3:84,722,575...84,886,505 		JBrowse link
G Flt3 FMS-like tyrosine kinase 3 IAGP MGI PMID:7621074 NCBI chr 5:147,267,551...147,337,299
Ensembl chr 5:147,267,551...147,337,299 		JBrowse link
G Flt3l FMS-like tyrosine kinase 3 ligand IAGP MGI PMID:12387740 NCBI chr 7:44,780,607...44,785,914
Ensembl chr 7:44,779,212...44,785,856 		JBrowse link
G Foxn1 forkhead box N1 IAGP MGI PMID:14528302 NCBI chr11:78,248,403...78,277,597
Ensembl chr11:78,248,403...78,277,384 		JBrowse link
G Gata3 GATA binding protein 3 IAGP MGI PMID:19934022 NCBI chr 2:9,861,889...9,894,845
Ensembl chr 2:9,861,889...9,894,845 		JBrowse link
G Gfi1 growth factor independent 1 transcription repressor IAGP MGI PMID:16397623 NCBI chr 5:107,864,521...107,873,671
Ensembl chr 5:107,864,523...107,873,902 		JBrowse link
G Gpr15 G protein-coupled receptor 15 IAGP MGI PMID:23661644 NCBI chr16:58,537,006...58,539,235
Ensembl chr16:58,537,796...58,539,433 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:16951689 PMID:28846072 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294 		JBrowse link
G Ifng interferon gamma IAGP MGI PMID:9109438 NCBI chr10:118,276,951...118,281,799
Ensembl chr10:118,276,951...118,281,797 		JBrowse link
G Igbp1 immunoglobulin (CD79A) binding protein 1 IAGP MGI PMID:12811850 NCBI chr  X:99,537,897...99,559,731
Ensembl chr  X:99,537,897...99,559,731 		JBrowse link
G Igh immunoglobulin heavy chain complex IAGP MGI PMID:16968900 NCBI chr12:113,222,388...115,973,574 JBrowse link
G Ikzf1 IKAROS family zinc finger 1 IAGP MGI PMID:12871645 PMID:24013668 NCBI chr11:11,634,970...11,722,930
Ensembl chr11:11,634,980...11,722,926 		JBrowse link
G Il2rg interleukin 2 receptor, gamma chain IAGP MGI PMID:7697543 NCBI chr  X:100,307,991...100,311,861
Ensembl chr  X:100,307,984...100,311,861 		JBrowse link
G Il7 interleukin 7 IAGP MGI PMID:23018454 NCBI chr 3:7,637,088...7,678,820
Ensembl chr 3:7,635,054...7,678,820 		JBrowse link
G Kat6a K(lysine) acetyltransferase 6A IAGP MGI PMID:16651658 NCBI chr 8:23,349,458...23,433,275
Ensembl chr 8:23,349,551...23,433,275 		JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase IAGP MGI PMID:7621074 NCBI chr 5:75,735,647...75,817,382
Ensembl chr 5:75,735,576...75,817,382 		JBrowse link
G Kitl kit ligand IAGP MGI PMID:19874813 NCBI chr10:99,851,477...99,936,278
Ensembl chr10:99,851,492...99,936,278 		JBrowse link
G Kmt2e lysine (K)-specific methyltransferase 2E IAGP MGI PMID:18952892 NCBI chr 5:23,638,034...23,709,233
Ensembl chr 5:23,639,439...23,709,233 		JBrowse link
G Kras Kirsten rat sarcoma viral oncogene homolog IAGP MGI PMID:28846072 NCBI chr 6:145,162,425...145,197,631
Ensembl chr 6:145,162,425...145,195,965 		JBrowse link
G Lat linker for activation of T cells IAGP MGI PMID:10204488 PMID:12871507 NCBI chr 7:125,962,999...125,968,877
Ensembl chr 7:125,962,996...125,968,742 		JBrowse link
G Lcp2 lymphocyte cytosolic protein 2 IAGP MGI PMID:19401562 NCBI chr11:33,996,928...34,042,281
Ensembl chr11:33,996,920...34,042,295 		JBrowse link
G Lig4 ligase IV, DNA, ATP-dependent IAGP MGI PMID:20133615 NCBI chr 8:10,020,020...10,027,680
Ensembl chr 8:10,019,049...10,027,686 		JBrowse link
G Lrfn2 leucine rich repeat and fibronectin type III domain containing 2 IAGP MGI PMID:7926766 NCBI chr17:49,238,630...49,404,619
Ensembl chr17:49,239,407...49,404,616 		JBrowse link
G Lrrc8a leucine rich repeat containing 8A VRAC subunit A IAGP MGI PMID:24752297 NCBI chr 2:30,127,781...30,153,802
Ensembl chr 2:30,127,727...30,153,802 		JBrowse link
G Mcl1 myeloid cell leukemia sequence 1 IAGP MGI PMID:14668867 PMID:18566418 PMID:19234191 NCBI chr 3:95,564,017...95,583,553
Ensembl chr 3:95,566,099...95,570,487 		JBrowse link
G Mdm2 transformed mouse 3T3 cell double minute 2 IAGP MGI PMID:12509446 NCBI chr10:117,524,780...117,546,663
Ensembl chr10:117,524,780...117,546,663 		JBrowse link
G Msi2 musashi RNA-binding protein 2 IAGP MGI PMID:21613258 NCBI chr11:88,230,208...88,609,197
Ensembl chr11:88,230,208...88,609,339 		JBrowse link
G Nampt nicotinamide phosphoribosyltransferase IAGP MGI PMID:18802071 NCBI chr12:32,870,334...32,903,368
Ensembl chr12:32,869,544...32,903,348 		JBrowse link
G Ncaph2 non-SMC condensin II complex, subunit H2 IAGP MGI PMID:17640884 NCBI chr15:89,239,920...89,257,030
Ensembl chr15:89,239,922...89,257,029 		JBrowse link
G Nfkbia nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha IAGP MGI PMID:11067893 NCBI chr12:55,536,194...55,539,432
Ensembl chr12:55,536,195...55,539,432 		JBrowse link
G Notch1 notch 1 IAGP MGI PMID:10367900 PMID:18227520 PMID:19110448 NCBI chr 2:26,347,914...26,393,834
Ensembl chr 2:26,347,915...26,406,675 		JBrowse link
G Pax1 paired box 1 IAGP MGI PMID:16093716 NCBI chr 2:147,203,850...147,216,972
Ensembl chr 2:147,203,845...147,235,215 		JBrowse link
G Pbx1 pre B cell leukemia homeobox 1 IAGP MGI PMID:18462698 NCBI chr 1:167,946,933...168,259,898
Ensembl chr 1:167,946,933...168,259,839 		JBrowse link
G Pdia6 protein disulfide isomerase associated 6 IAGP MGI PMID:31985756 NCBI chr12:17,316,590...17,334,786
Ensembl chr12:17,316,546...17,334,771 		JBrowse link
G Phf6 PHD finger protein 6 IAGP MGI PMID:31395598 NCBI chr  X:52,001,091...52,045,838
Ensembl chr  X:52,001,143...52,045,820 		JBrowse link
G Plcg1 phospholipase C, gamma 1 IAGP MGI PMID:20123962 NCBI chr 2:160,573,230...160,617,680
Ensembl chr 2:160,573,220...160,617,680 		JBrowse link
G Prkch protein kinase C, eta IAGP MGI PMID:22155788 NCBI chr12:73,631,570...73,824,959
Ensembl chr12:73,631,570...73,824,959 		JBrowse link
G Prkcq protein kinase C, theta IAGP MGI PMID:22155788 NCBI chr 2:11,176,922...11,306,033
Ensembl chr 2:11,176,919...11,306,033 		JBrowse link
G Prkdc protein kinase, DNA activated, catalytic polypeptide