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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term:abnormal lacrimal gland morphology
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Accession:MP:0001346 term browser browse the term
Definition:any structural anomaly of the glands that secrete tears
Synonyms:exact_synonym: abnormal lachrymal glands morphology
 narrow_synonym: lacrimal gland dysplasia
 alt_id: MP:0000682


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abnormal lacrimal gland morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aire autoimmune regulator IAGP MGI PMID:20696775 NCBI chr10:77,865,856...77,879,444
Ensembl chr10:77,865,856...77,879,444 		JBrowse link
G Aqp5 aquaporin 5 IAGP MGI PMID:33013441 NCBI chr15:99,488,909...99,492,710
Ensembl chr15:99,488,663...99,492,710 		JBrowse link
G Ccr7 C-C motif chemokine receptor 7 IAGP MGI PMID:16473829 NCBI chr11:99,035,025...99,045,903
Ensembl chr11:99,035,022...99,045,903 		JBrowse link
G Cftr cystic fibrosis transmembrane conductance regulator IAGP MGI PMID:7685652 NCBI chr 6:18,170,686...18,322,769
Ensembl chr 6:18,170,686...18,322,767 		JBrowse link
G Ctnnd1 catenin delta 1 IAGP MGI PMID:16399075 NCBI chr 2:84,417,440...84,489,321
Ensembl chr 2:84,430,415...84,481,109
Ensembl chr 2:84,430,415...84,481,109 		JBrowse link
G Fas Fas cell surface death receptor IAGP MGI PMID:17898284 NCBI chr19:34,267,926...34,305,175
Ensembl chr19:34,268,066...34,305,172 		JBrowse link
G Foxc1 forkhead box C1 IAGP MGI PMID:16470615 NCBI chr13:31,990,629...31,994,618
Ensembl chr13:31,990,616...31,996,459 		JBrowse link
G Id3 inhibitor of DNA binding 3 IAGP MGI PMID:15485632 NCBI chr 4:135,871,133...135,872,703
Ensembl chr 4:135,870,808...135,873,066 		JBrowse link
G Il1r1 interleukin 1 receptor, type I IAGP MGI PMID:20696775 NCBI chr 1:40,261,651...40,355,361
Ensembl chr 1:40,264,240...40,356,417 		JBrowse link
G Klf5 Kruppel-like transcription factor 5 IAGP MGI PMID:21600198 NCBI chr14:99,536,127...99,550,848
Ensembl chr14:99,536,127...99,552,472 		JBrowse link
G Pax6 paired box 6 IAGP MGI PMID:22240097 NCBI chr 2:105,499,241...105,528,755
Ensembl chr 2:105,499,245...105,527,709 		JBrowse link
G Prlr prolactin receptor IAGP MGI PMID:11133844 NCBI chr15:10,177,324...10,349,276
Ensembl chr15:10,177,324...10,349,266 		JBrowse link
G Sirt1 sirtuin 1 IAGP MGI PMID:28273169 NCBI chr10:63,154,784...63,174,814
Ensembl chr10:63,154,784...63,217,483 		JBrowse link
G Tnfrsf9 tumor necrosis factor receptor superfamily, member 9 IAGP MGI PMID:17898284 NCBI chr 4:151,004,612...151,030,561
Ensembl chr 4:150,999,019...151,030,559 		JBrowse link
abnormal exorbital lacrimal gland morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G E2f1 E2F transcription factor 1 IAGP MGI PMID:8653789 NCBI chr 2:154,401,320...154,411,812
Ensembl chr 2:154,401,327...154,411,812 		JBrowse link
G Foxc1 forkhead box C1 IAGP MGI PMID:16470615 NCBI chr13:31,990,629...31,994,618
Ensembl chr13:31,990,616...31,996,459 		JBrowse link
abnormal lacrimal gland branching morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxc1 forkhead box C1 IAGP MGI PMID:16470615 NCBI chr13:31,990,629...31,994,618
Ensembl chr13:31,990,616...31,996,459 		JBrowse link
abnormal lacrimal gland development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr2 fibroblast growth factor receptor 2 IAGP MGI PMID:18077586 NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079 		JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:22745308 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443 		JBrowse link
G Kras Kirsten rat sarcoma viral oncogene homolog IAGP MGI PMID:22745308 NCBI chr 6:145,162,425...145,197,631
Ensembl chr 6:145,162,425...145,195,965 		JBrowse link
G Ndst1 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 IAGP MGI PMID:18077586 PMID:22745308 NCBI chr18:60,817,566...60,907,465
Ensembl chr18:60,817,566...60,881,722 		JBrowse link
G Ndst2 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2 IAGP MGI PMID:22745308 NCBI chr14:20,773,798...20,784,638
Ensembl chr14:20,773,798...20,784,630 		JBrowse link
G Ptpn11 protein tyrosine phosphatase, non-receptor type 11 IAGP MGI PMID:18077586 NCBI chr 5:121,268,596...121,329,460
Ensembl chr 5:121,268,596...121,329,460 		JBrowse link
G Rara retinoic acid receptor, alpha IAGP MGI PMID:7607067 NCBI chr11:98,818,626...98,865,768
Ensembl chr11:98,818,644...98,865,768 		JBrowse link
G Rarb retinoic acid receptor, beta IAGP MGI PMID:7607067 NCBI chr14:5,387,365...6,038,924
Ensembl chr14:5,650,540...6,038,924 		JBrowse link
G Rarg retinoic acid receptor, gamma IAGP MGI PMID:7607067 NCBI chr15:102,143,373...102,165,891
Ensembl chr15:102,143,373...102,165,952 		JBrowse link
G Six1 sine oculis-related homeobox 1 IAGP MGI PMID:12834866 NCBI chr12:73,088,601...73,093,486
Ensembl chr12:73,086,789...73,100,661 		JBrowse link
G Ugdh UDP-glucose dehydrogenase IAGP MGI PMID:22745308 NCBI chr 5:65,570,550...65,593,185
Ensembl chr 5:65,570,564...65,593,292 		JBrowse link
absent exorbital lacrimal gland term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr2 fibroblast growth factor receptor 2 IAGP MGI PMID:11274405 NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079 		JBrowse link
absent intraorbital lacrimal gland term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxc1 forkhead box C1 IAGP MGI PMID:16470615 NCBI chr13:31,990,629...31,994,618
Ensembl chr13:31,990,616...31,996,459 		JBrowse link
absent lacrimal gland bud term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr2 fibroblast growth factor receptor 2 IAGP MGI PMID:18077586 NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079 		JBrowse link
absent lacrimal glands term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 IAGP MGI PMID:10964474 NCBI chr13:118,851,199...118,928,651
Ensembl chr13:118,806,327...118,928,651 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 IAGP MGI PMID:18077586 PMID:20503384 NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079 		JBrowse link
G Fign fidgetin IEA MGI NCBI chr 2:63,801,852...63,928,382
Ensembl chr 2:63,801,851...63,928,382 		JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:22745308 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443 		JBrowse link
G Kras Kirsten rat sarcoma viral oncogene homolog IAGP MGI PMID:22745308 NCBI chr 6:145,162,425...145,197,631
Ensembl chr 6:145,162,425...145,195,965 		JBrowse link
G Ndst1 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 IAGP MGI PMID:18077586 PMID:22745308 NCBI chr18:60,817,566...60,907,465
Ensembl chr18:60,817,566...60,881,722 		JBrowse link
G Ndst2 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2 IAGP MGI PMID:18077586 PMID:22745308 NCBI chr14:20,773,798...20,784,638
Ensembl chr14:20,773,798...20,784,630 		JBrowse link
G Otx1 orthodenticle homeobox 1 IAGP MGI PMID:8841200 PMID:9077465 PMID:9521907 PMID:10068635 NCBI chr11:21,944,764...21,954,044
Ensembl chr11:21,944,764...21,952,897 		JBrowse link
G Ptpn11 protein tyrosine phosphatase, non-receptor type 11 IAGP MGI PMID:18077586 NCBI chr 5:121,268,596...121,329,460
Ensembl chr 5:121,268,596...121,329,460 		JBrowse link
G Trp63 transformation related protein 63 IAGP MGI PMID:10227294 NCBI chr16:25,502,513...25,710,842
Ensembl chr16:25,502,513...25,710,852 		JBrowse link
G Ugdh UDP-glucose dehydrogenase IAGP MGI PMID:22745308 NCBI chr 5:65,570,550...65,593,185
Ensembl chr 5:65,570,564...65,593,292 		JBrowse link
enlarged lacrimal gland term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pitx3 paired-like homeodomain transcription factor 3 IAGP MGI PMID:4970465 NCBI chr19:46,123,720...46,136,764
Ensembl chr19:46,124,124...46,136,765 		JBrowse link
lacrimal gland atrophy term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cftr cystic fibrosis transmembrane conductance regulator IAGP MGI PMID:7505691 NCBI chr 6:18,170,686...18,322,769
Ensembl chr 6:18,170,686...18,322,767 		JBrowse link
G Fas Fas cell surface death receptor IAGP MGI PMID:1565490 NCBI chr19:34,267,926...34,305,175
Ensembl chr19:34,268,066...34,305,172 		JBrowse link
lacrimal gland degeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Notch1 notch 1 IAGP MGI PMID:23293291 NCBI chr 2:26,347,914...26,393,834
Ensembl chr 2:26,347,915...26,406,675 		JBrowse link
lacrimal gland hypertrophy term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ncdn neurochondrin IAGP MGI PMID:12904583 NCBI chr 4:126,637,548...126,647,203
Ensembl chr 4:126,637,543...126,647,231 		JBrowse link
G Vsx2 visual system homeobox 2 IAGP MGI PMID:13994395 NCBI chr12:84,616,602...84,642,231
Ensembl chr12:84,616,536...84,642,231 		JBrowse link
lacrimal gland necrosis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Klf5 Kruppel-like transcription factor 5 IAGP MGI PMID:21600198 NCBI chr14:99,536,127...99,550,848
Ensembl chr14:99,536,127...99,552,472 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 16965
    endocrine/exocrine gland phenotype 3451
      abnormal gland morphology 3210
        abnormal exocrine gland morphology 1111
          abnormal lacrimal gland morphology 34
            abnormal exorbital lacrimal gland morphology + 3
            abnormal intraorbital lacrimal gland morphology + 1
            abnormal lacrimal gland development + 12
            abnormal lacrimal gland myoepithelium morphology 0
            abnormal lacrimal sac morphology 0
            absent lacrimal glands 11
            enlarged lacrimal gland + 3
            lacrimal gland atrophy 2
            lacrimal gland degeneration 1
            lacrimal gland hypoplasia 0
            lacrimal gland necrosis 1
Path 2
Term Annotations click to browse term
  mammalian phenotype 16965
    vision/eye phenotype 3150
      abnormal eye morphology 2990
        abnormal ocular surface morphology 93
          abnormal lacrimal apparatus morphology 36
            abnormal lacrimal gland morphology 34
              abnormal exorbital lacrimal gland morphology + 3
              abnormal intraorbital lacrimal gland morphology + 1
              abnormal lacrimal gland development + 12
              abnormal lacrimal gland myoepithelium morphology 0
              abnormal lacrimal sac morphology 0
              absent lacrimal glands 11
              enlarged lacrimal gland + 3
              lacrimal gland atrophy 2
              lacrimal gland degeneration 1
              lacrimal gland hypoplasia 0
              lacrimal gland necrosis 1
paths to the root