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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term:abnormal crypts of Lieberkuhn morphology
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Accession:MP:0000490 term browser browse the term
Definition:any structural anomaly of the tubular intestinal glands found in the mucosal membranes
Synonyms:exact_synonym: abnormal intestinal gland morphology;   abnormal intestinal glands
 narrow_synonym: crypts of Lieberkuhn dysplasia;   intestinal gland dysplasia


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abnormal crypts of Lieberkuhn morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC, WNT signaling pathway regulator IAGP MGI PMID:10783317 PMID:15731405 PMID:18829546 NCBI chr18:34,353,350...34,455,243
Ensembl chr18:34,353,977...34,455,605 		JBrowse link
G B3gnt6 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 IAGP MGI PMID:17517967 NCBI chr 7:97,841,622...97,848,682
Ensembl chr 7:97,841,624...97,848,688 		JBrowse link
G Bmi1 Bmi1 polycomb ring finger oncogene IAGP MGI PMID:18536716 NCBI chr 2:18,681,953...18,691,440
Ensembl chr 2:18,681,829...18,691,440 		JBrowse link
G Braf Braf transforming gene IAGP MGI PMID:23845441 NCBI chr 6:39,580,171...39,702,592
Ensembl chr 6:39,580,171...39,702,397 		JBrowse link
G Btnl2 butyrophilin-like 2 IAGP MGI PMID:35017553 NCBI chr17:34,573,763...34,588,466
Ensembl chr17:34,573,796...34,588,469 		JBrowse link
G Cdc42 cell division cycle 42 IAGP MGI PMID:22354172 NCBI chr 4:137,047,011...137,085,007
Ensembl chr 4:137,047,007...137,085,031 		JBrowse link
G Cdkn1a cyclin dependent kinase inhibitor 1A IAGP MGI PMID:16322092 NCBI chr17:29,309,953...29,319,696
Ensembl chr17:29,309,950...29,319,701 		JBrowse link
G Cdkn1b cyclin dependent kinase inhibitor 1B IAGP MGI PMID:16322092 NCBI chr 6:134,897,364...134,902,488
Ensembl chr 6:134,897,364...134,902,476 		JBrowse link
G Cdx1 caudal type homeobox 1 IAGP MGI PMID:22190642 NCBI chr18:61,151,934...61,169,292
Ensembl chr18:61,151,934...61,169,271 		JBrowse link
G Cdx2 caudal type homeobox 2 IAGP MGI PMID:22190642 NCBI chr 5:147,237,710...147,244,059
Ensembl chr 5:147,237,615...147,244,080 		JBrowse link
G Cftr cystic fibrosis transmembrane conductance regulator IAGP MGI PMID:1380723 PMID:7482032 PMID:7685652 PMID:8589719 PMID:15921521 NCBI chr 6:18,170,686...18,322,769
Ensembl chr 6:18,170,686...18,322,767 		JBrowse link
G Ctnnb1 catenin beta 1 IAGP MGI PMID:15131783 PMID:18536716 NCBI chr 9:120,762,466...120,789,573
Ensembl chr 9:120,758,282...120,789,573 		JBrowse link
G Ctsd cathepsin D IAGP MGI PMID:7641679 NCBI chr 7:141,929,647...141,941,564
Ensembl chr 7:141,929,648...141,941,775 		JBrowse link
G E2f4 E2F transcription factor 4 IAGP MGI PMID:10983977 NCBI chr 8:106,024,295...106,032,002
Ensembl chr 8:106,024,295...106,032,002 		JBrowse link
G Ehf ets homologous factor IAGP MGI PMID:30224759 NCBI chr 2:103,093,776...103,133,620
Ensembl chr 2:103,093,778...103,133,623 		JBrowse link
G Elavl1 ELAV like RNA binding protein 1 IAGP MGI PMID:19884656 NCBI chr 8:4,334,781...4,375,104
Ensembl chr 8:4,335,382...4,375,413 		JBrowse link
G Epcam epithelial cell adhesion molecule IAGP MGI PMID:23209569 NCBI chr17:87,943,407...87,958,555
Ensembl chr17:87,943,407...87,958,557 		JBrowse link
G Ephb2 Eph receptor B2 IAGP MGI PMID:16777604 NCBI chr 4:136,374,850...136,563,637
Ensembl chr 4:136,374,850...136,563,299 		JBrowse link
G Fam3d FAM3 metabolism regulating signaling molecule D IAGP MGI PMID:33219235 NCBI chr14:14,091,010...14,120,836
Ensembl chr14:14,091,019...14,120,836 		JBrowse link
G Fem1a fem 1 homolog a IAGP MGI PMID:26439841 NCBI chr17:56,563,793...56,570,608
Ensembl chr17:56,563,810...56,570,610 		JBrowse link
G Folr1 folate receptor alpha IAGP MGI PMID:15705887 NCBI chr 7:101,507,551...101,519,974
Ensembl chr 7:101,507,538...101,519,995 		JBrowse link
G Foxl1 forkhead box L1 IAGP MGI PMID:16469829 NCBI chr 8:121,854,572...121,857,383
Ensembl chr 8:121,854,679...121,857,383 		JBrowse link
G Gata6os GATA binding protein 6, opposite strand IAGP MGI PMID:30224759 NCBI chr18:11,042,037...11,052,567
Ensembl chr18:10,987,944...11,052,936 		JBrowse link
G Glp2r glucagon-like peptide 2 receptor IAGP MGI PMID:18829546 NCBI chr11:67,554,877...67,661,979
Ensembl chr11:67,552,328...67,661,979 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:19884656 PMID:22354172 PMID:22469981 PMID:22510880 PMID:23222438 More... NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294 		JBrowse link
G H2az1 H2A.Z variant histone 1 IAGP MGI PMID:30842416 NCBI chr 3:137,570,248...137,572,683
Ensembl chr 3:137,570,248...137,572,683 		JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:30842416 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443 		JBrowse link
G Il10 interleukin 10 IAGP MGI PMID:8402911 NCBI chr 1:130,947,459...130,952,707
Ensembl chr 1:130,947,582...130,952,711 		JBrowse link
G Il10rb interleukin 10 receptor, beta IAGP MGI PMID:9463407 NCBI chr16:91,203,166...91,222,718
Ensembl chr16:91,203,052...91,222,722 		JBrowse link
G Il25 interleukin 25 IAGP MGI PMID:16606667 NCBI chr14:55,170,152...55,173,294
Ensembl chr14:55,170,152...55,173,294 		JBrowse link
G Il4ra interleukin 4 receptor, alpha IAGP MGI PMID:18220315 NCBI chr 7:125,151,443...125,178,646
Ensembl chr 7:125,151,292...125,178,646 		JBrowse link
G Itgb1 integrin beta 1 (fibronectin receptor beta) IAGP MGI PMID:17088430 NCBI chr 8:129,412,135...129,460,060
Ensembl chr 8:129,412,135...129,459,681 		JBrowse link
G Lgr5 leucine rich repeat containing G protein coupled receptor 5 IAGP MGI PMID:22190642 PMID:22354172 PMID:22464327 PMID:30224759 NCBI chr10:115,286,219...115,423,685
Ensembl chr10:115,286,216...115,423,685 		JBrowse link
G Lrig1 leucine-rich repeats and immunoglobulin-like domains 1 IAGP MGI PMID:22464327 NCBI chr 6:94,581,510...94,677,205
Ensembl chr 6:94,581,510...94,677,139 		JBrowse link
G Map2k1 mitogen-activated protein kinase kinase 1 IAGP MGI PMID:21514245 NCBI chr 9:64,093,066...64,160,887
Ensembl chr 9:64,093,052...64,160,913 		JBrowse link
G Map2k2 mitogen-activated protein kinase kinase 2 IAGP MGI PMID:21514245 NCBI chr10:80,941,749...80,960,531
Ensembl chr10:80,941,749...80,969,809 		JBrowse link
G Muc13 mucin 13, epithelial transmembrane IAGP MGI PMID:21636645 NCBI chr16:33,614,407...33,640,299
Ensembl chr16:33,614,407...33,640,304 		JBrowse link
G Nkx2-3 NK2 homeobox 3 IAGP MGI PMID:10207146 NCBI chr19:43,600,764...43,604,331
Ensembl chr19:43,600,764...43,604,331 		JBrowse link
G Nr5a2 nuclear receptor subfamily 5, group A, member 2 IAGP MGI PMID:15327767 PMID:17670946 NCBI chr 1:136,770,300...136,888,186
Ensembl chr 1:136,770,309...136,888,186 		JBrowse link
G Nrbp1 nuclear receptor binding protein 1 IAGP MGI PMID:22510880 NCBI chr 5:31,398,227...31,408,910
Ensembl chr 5:31,398,208...31,408,910 		JBrowse link
G Nuak2 NUAK family, SNF1-like kinase, 2 IAGP MGI PMID:18307533 NCBI chr 1:132,243,827...132,261,233
Ensembl chr 1:132,243,864...132,261,226 		JBrowse link
G Pglyrp1 peptidoglycan recognition protein 1 IAGP MGI PMID:20709292 NCBI chr 7:18,618,615...18,624,363
Ensembl chr 7:18,605,256...18,624,384 		JBrowse link
G Pglyrp2 peptidoglycan recognition protein 2 IAGP MGI PMID:20709292 NCBI chr17:32,631,433...32,643,157
Ensembl chr17:32,631,433...32,643,141 		JBrowse link
G Pglyrp3 peptidoglycan recognition protein 3 IAGP MGI PMID:20709292 NCBI chr 3:91,919,784...91,939,979
Ensembl chr 3:91,921,890...91,938,889 		JBrowse link
G Pglyrp4 peptidoglycan recognition protein 4 IAGP MGI PMID:20709292 NCBI chr 3:90,634,008...90,648,824
Ensembl chr 3:90,634,213...90,648,824 		JBrowse link
G Polg polymerase (DNA directed), gamma IAGP MGI PMID:16020738 NCBI chr 7:79,095,979...79,117,659
Ensembl chr 7:79,095,979...79,116,110 		JBrowse link
G Polr2a polymerase (RNA) II (DNA directed) polypeptide A IAGP MGI PMID:21514245 NCBI chr11:69,624,823...69,649,459
Ensembl chr11:69,624,823...69,649,463 		JBrowse link
G Pot1b protection of telomeres 1B IAGP MGI PMID:18936156 NCBI chr17:55,958,190...56,019,647
Ensembl chr17:55,958,951...56,019,628 		JBrowse link
G Ppargc1a peroxisome proliferative activated receptor, gamma, coactivator 1 alpha IAGP MGI PMID:21467224 NCBI chr 5:51,611,591...52,273,316
Ensembl chr 5:51,611,592...51,725,068 		JBrowse link
G Rab11a RAB11A, member RAS oncogene family IAGP MGI PMID:25063677 NCBI chr 9:64,622,582...64,645,038
Ensembl chr 9:64,622,581...64,645,040 		JBrowse link
G Rab8a RAB8A, member RAS oncogene family IAGP MGI PMID:22354172 NCBI chr 8:72,915,044...72,935,210
Ensembl chr 8:72,915,044...72,937,748 		JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region IAGP MGI PMID:15959515 NCBI chr 5:53,713,121...53,814,787
Ensembl chr 5:53,623,494...53,814,704 		JBrowse link
G Ripk3 receptor-interacting serine-threonine kinase 3 IAGP MGI PMID:24557836 NCBI chr14:56,022,452...56,026,314
Ensembl chr14:56,022,452...56,026,322 		JBrowse link
G Runx3 runt related transcription factor 3 IAGP MGI PMID:15514019 NCBI chr 4:134,847,956...134,905,301
Ensembl chr 4:134,847,963...134,905,301 		JBrowse link
G Sgo1 shugoshin 1 IAGP MGI PMID:22262168 NCBI chr17:53,981,814...53,996,432
Ensembl chr17:53,981,814...53,996,361 		JBrowse link
G Slc19a1 solute carrier family 19 (folate transporter), member 1 IAGP MGI PMID:15705887 NCBI chr10:76,868,103...76,886,266
Ensembl chr10:76,868,075...76,896,836 		JBrowse link
G Slc6a4 solute carrier family 6 (neurotransmitter transporter, serotonin), member 4 IAGP MGI PMID:27111230 NCBI chr11:76,889,423...76,923,169
Ensembl chr11:76,889,429...76,923,166 		JBrowse link
G Spdef SAM pointed domain containing ets transcription factor IAGP MGI PMID:19549527 NCBI chr17:27,933,416...27,949,977
Ensembl chr17:27,933,326...27,947,929 		JBrowse link
G Tcf7l2 transcription factor 7 like 2, T cell specific, HMG box IAGP MGI PMID:21383188 NCBI chr19:55,730,227...55,922,091
Ensembl chr19:55,730,252...55,922,086 		JBrowse link
G Terc telomerase RNA component IAGP MGI PMID:15235603 PMID:18936156 NCBI chr 3:96,321,753...96,322,149
Ensembl chr 3:96,321,753...96,322,149 		JBrowse link
G Tert telomerase reverse transcriptase IAGP MGI PMID:21113150 NCBI chr13:73,775,030...73,797,962
Ensembl chr13:73,775,030...73,797,962 		JBrowse link
G Tff2 trefoil factor 2 (spasmolytic protein 1) IAGP MGI PMID:11805131 NCBI chr17:31,360,036...31,363,256
Ensembl chr17:31,360,023...31,363,256 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 IAGP MGI PMID:17481928 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502 		JBrowse link
G Trp53inp1 transformation related protein 53 inducible nuclear protein 1 IAGP MGI PMID:17242209 NCBI chr 4:11,156,441...11,174,379
Ensembl chr 4:11,156,431...11,174,379 		JBrowse link
G Ttll3 tubulin tyrosine ligase-like family, member 3 IAGP MGI PMID:25180231 NCBI chr 6:113,366,221...113,391,553
Ensembl chr 6:113,366,221...113,391,548 		JBrowse link
G Was Wiskott-Aldrich syndrome IAGP MGI PMID:9697838 PMID:17878299 NCBI chr  X:7,947,705...7,956,730
Ensembl chr  X:7,947,692...7,956,737 		JBrowse link
G Wasl WASP like actin nucleation promoting factor IAGP MGI PMID:17878299 NCBI chr 6:24,613,809...24,665,185
Ensembl chr 6:24,613,804...24,665,008 		JBrowse link
G Wrn Werner syndrome RecQ like helicase IAGP MGI PMID:15235603 NCBI chr 8:33,724,400...33,875,591
Ensembl chr 8:33,724,412...33,875,555 		JBrowse link
G Znhit1 zinc finger, HIT domain containing 1 IAGP MGI PMID:30842416 NCBI chr 5:137,011,048...137,016,813
Ensembl chr 5:137,011,018...137,016,875 		JBrowse link
abnormal colon goblet cell morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC, WNT signaling pathway regulator IAGP MGI PMID:17332369 NCBI chr18:34,353,350...34,455,243
Ensembl chr18:34,353,977...34,455,605 		JBrowse link
G Bdnf brain derived neurotrophic factor IAGP MGI PMID:10514401 NCBI chr 2:109,505,045...109,557,388
Ensembl chr 2:109,505,045...109,557,352 		JBrowse link
G Cftr cystic fibrosis transmembrane conductance regulator IAGP MGI PMID:7527588 PMID:8589719 NCBI chr 6:18,170,686...18,322,769
Ensembl chr 6:18,170,686...18,322,767 		JBrowse link
G E2f4 E2F transcription factor 4 IAGP MGI PMID:10983977 NCBI chr 8:106,024,295...106,032,002
Ensembl chr 8:106,024,295...106,032,002 		JBrowse link
G Ednrb endothelin receptor type B IAGP MGI PMID:24945437 NCBI chr14:104,052,055...104,081,764
Ensembl chr14:104,052,061...104,081,838 		JBrowse link
G Esr1 estrogen receptor 1 (alpha) IAGP MGI PMID:17332369 NCBI chr10:4,561,989...4,955,633
Ensembl chr10:4,561,593...4,955,614 		JBrowse link
G Esr2 estrogen receptor 2 (beta) IAGP MGI PMID:17332369 NCBI chr12:76,167,193...76,224,033
Ensembl chr12:76,167,193...76,224,033 		JBrowse link
G Fam3d FAM3 metabolism regulating signaling molecule D IAGP MGI PMID:33219235 NCBI chr14:14,091,010...14,120,836
Ensembl chr14:14,091,019...14,120,836 		JBrowse link
G Gimap5 GTPase, IMAP family member 5 IAGP MGI PMID:20190135 NCBI chr 6:48,723,131...48,731,134
Ensembl chr 6:48,723,131...48,731,144 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:18372904 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294 		JBrowse link
G Igf2bp1 insulin-like growth factor 2 mRNA binding protein 1 IAGP MGI PMID:15121863 NCBI chr11:95,847,989...95,896,770
Ensembl chr11:95,847,989...95,896,766 		JBrowse link
G Klf4 Kruppel-like transcription factor 4 (gut) IAGP MGI PMID:12015290 NCBI chr 4:55,527,137...55,536,984
Ensembl chr 4:55,527,143...55,532,466 		JBrowse link
G Kras Kirsten rat sarcoma viral oncogene homolog IAGP MGI PMID:18372904 NCBI chr 6:145,162,425...145,197,631
Ensembl chr 6:145,162,425...145,195,965 		JBrowse link
G Lep leptin IAGP MGI PMID:16455789 NCBI chr 6:29,060,220...29,073,875
Ensembl chr 6:29,060,219...29,073,876 		JBrowse link
G Nfil3 nuclear factor, interleukin 3, regulated IAGP MGI PMID:24442434 NCBI chr13:53,121,245...53,136,914
Ensembl chr13:53,121,245...53,135,109 		JBrowse link
G Slc9a8 solute carrier family 9 (sodium/hydrogen exchanger), member 8 IAGP MGI PMID:22575219 NCBI chr 2:167,261,678...167,318,920
Ensembl chr 2:167,263,632...167,318,920 		JBrowse link
G Tcf7l2 transcription factor 7 like 2, T cell specific, HMG box IAGP MGI PMID:21383188 NCBI chr19:55,730,227...55,922,091
Ensembl chr19:55,730,252...55,922,086 		JBrowse link
G Zranb1 zinc finger, RAN-binding domain containing 1 IAGP MGI PMID:36087511 NCBI chr 7:132,532,905...132,588,127
Ensembl chr 7:132,532,871...132,588,120 		JBrowse link
abnormal duodenum crypts of Lieberkuhn morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap1m2 adaptor protein complex AP-1, mu 2 subunit IAGP MGI PMID:23684748 NCBI chr 9:21,206,753...21,223,617
Ensembl chr 9:21,205,571...21,223,633 		JBrowse link
G B3gnt6 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 IAGP MGI PMID:27229122 NCBI chr 7:97,841,622...97,848,682
Ensembl chr 7:97,841,624...97,848,688 		JBrowse link
G Bmi1 Bmi1 polycomb ring finger oncogene IAGP MGI PMID:18536716 NCBI chr 2:18,681,953...18,691,440
Ensembl chr 2:18,681,829...18,691,440 		JBrowse link
G C1galt1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 IAGP MGI PMID:27229122 NCBI chr 6:7,845,224...7,872,042
Ensembl chr 6:7,844,842...7,875,687 		JBrowse link
G Cdhr2 cadherin-related family member 2 IAGP MGI PMID:30403560 NCBI chr13:54,849,276...54,884,475
Ensembl chr13:54,849,274...54,884,475 		JBrowse link
G Gatm glycine amidinotransferase (L-arginine:glycine amidinotransferase) IAGP MGI PMID:28137860 NCBI chr 2:122,424,954...122,441,758
Ensembl chr 2:122,424,948...122,441,784 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:18536716 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294 		JBrowse link
abnormal ileum crypts of Lieberkuhn morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpx1 glutathione peroxidase 1 IAGP MGI PMID:10915653 NCBI chr 9:108,216,279...108,217,541
Ensembl chr 9:108,216,102...108,217,542 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:22902753 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294 		JBrowse link
G Lgr5 leucine rich repeat containing G protein coupled receptor 5 IAGP MGI PMID:22902753 NCBI chr10:115,286,219...115,423,685
Ensembl chr10:115,286,216...115,423,685 		JBrowse link
G Slc9a8 solute carrier family 9 (sodium/hydrogen exchanger), member 8 IAGP MGI PMID:22575219 NCBI chr 2:167,261,678...167,318,920
Ensembl chr 2:167,263,632...167,318,920 		JBrowse link
abnormal jejunum crypts of Lieberkuhn morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap1m2 adaptor protein complex AP-1, mu 2 subunit IAGP MGI PMID:23684748 NCBI chr 9:21,206,753...21,223,617
Ensembl chr 9:21,205,571...21,223,633 		JBrowse link
G Bmi1 Bmi1 polycomb ring finger oncogene IAGP MGI PMID:18536716 NCBI chr 2:18,681,953...18,691,440
Ensembl chr 2:18,681,829...18,691,440 		JBrowse link
G Csnk1a1 casein kinase 1, alpha 1 IAGP MGI PMID:32728212 NCBI chr18:61,687,307...61,723,391
Ensembl chr18:61,688,345...61,723,132 		JBrowse link
G Gpx1 glutathione peroxidase 1 IAGP MGI PMID:10915653 NCBI chr 9:108,216,279...108,217,541
Ensembl chr 9:108,216,102...108,217,542 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:18536716 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294 		JBrowse link
G Nkx2-3 NK2 homeobox 3 IAGP MGI PMID:10926756 NCBI chr19:43,600,764...43,604,331
Ensembl chr19:43,600,764...43,604,331 		JBrowse link
G Trp53 transformation related protein 53 IAGP MGI PMID:32728212 NCBI chr11:69,471,174...69,482,699
Ensembl chr11:69,471,185...69,482,699 		JBrowse link
abnormal large intestine crypts of Lieberkuhn morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb1a ATP-binding cassette, sub-family B member 1A IAGP MGI PMID:9820555 NCBI chr 5:8,617,091...8,798,575
Ensembl chr 5:8,710,077...8,798,575 		JBrowse link
G Agr2 anterior gradient 2 IAGP MGI PMID:20025862 NCBI chr12:36,042,924...36,054,080
Ensembl chr12:36,042,906...36,054,086 		JBrowse link
G Akr1b8 aldo-keto reductase family 1, member B8 IAGP MGI PMID:25538260 NCBI chr 6:34,331,081...34,345,396
Ensembl chr 6:34,331,054...34,345,398 		JBrowse link
G Apc APC, WNT signaling pathway regulator IAGP MGI PMID:17332369 NCBI chr18:34,353,350...34,455,243
Ensembl chr18:34,353,977...34,455,605 		JBrowse link
G Braf Braf transforming gene IAGP MGI PMID:23845441 NCBI chr 6:39,580,171...39,702,592
Ensembl chr 6:39,580,171...39,702,397 		JBrowse link
G Btrc beta-transducin repeat containing protein IAGP MGI PMID:24469832 NCBI chr19:45,352,119...45,521,782
Ensembl chr19:45,352,173...45,518,452 		JBrowse link
G Casr calcium-sensing receptor IAGP MGI PMID:22094462 NCBI chr16:36,310,947...36,382,605
Ensembl chr16:36,314,058...36,382,503 		JBrowse link
G Cftr cystic fibrosis transmembrane conductance regulator IAGP MGI PMID:7545494 PMID:7556083 NCBI chr 6:18,170,686...18,322,769
Ensembl chr 6:18,170,686...18,322,767 		JBrowse link
G Ednrb endothelin receptor type B IAGP MGI PMID:24945437 NCBI chr14:104,052,055...104,081,764
Ensembl chr14:104,052,061...104,081,838 		JBrowse link
G Ephb2 Eph receptor B2 IAGP MGI PMID:16777604 NCBI chr 4:136,374,850...136,563,637
Ensembl chr 4:136,374,850...136,563,299 		JBrowse link
G Ephb3 Eph receptor B3 IAGP MGI PMID:16777604 NCBI chr16:21,023,530...21,042,054
Ensembl chr16:21,023,505...21,042,055 		JBrowse link
G Esr1 estrogen receptor 1 (alpha) IAGP MGI PMID:17332369 NCBI chr10:4,561,989...4,955,633
Ensembl chr10:4,561,593...4,955,614 		JBrowse link
G Esr2 estrogen receptor 2 (beta) IAGP MGI PMID:16477031 NCBI chr12:76,167,193...76,224,033
Ensembl chr12:76,167,193...76,224,033 		JBrowse link
G Fbxw11 F-box and WD-40 domain protein 11 IAGP MGI PMID:24469832 NCBI chr11:32,592,595...32,696,816
Ensembl chr11:32,592,724...32,696,816 		JBrowse link
G Fgf10 fibroblast growth factor 10 IAGP MGI PMID:16956603 NCBI chr13:118,851,199...118,928,651
Ensembl chr13:118,806,327...118,928,651 		JBrowse link
G Filip1l filamin A interacting protein 1-like IAGP MGI PMID:34417201 NCBI chr16:57,173,376...57,393,167
Ensembl chr16:57,173,456...57,393,489 		JBrowse link
G Fpr2 formyl peptide receptor 2 IAGP MGI PMID:23454745 NCBI chr17:18,108,086...18,114,214
Ensembl chr17:18,108,086...18,114,214 		JBrowse link
G Gfus GDP-L-fucose synthase IAGP MGI PMID:12186857 NCBI chr15:75,796,532...75,801,613
Ensembl chr15:75,796,525...75,801,681 		JBrowse link
G Gimap5 GTPase, IMAP family member 5 IAGP MGI PMID:20190135 NCBI chr 6:48,723,131...48,731,134
Ensembl chr 6:48,723,131...48,731,144 		JBrowse link
G Gnai2 G protein subunit alpha i2 IAGP MGI PMID:8613481 NCBI chr 9:107,491,324...107,512,542
Ensembl chr 9:107,491,324...107,512,566 		JBrowse link
G Gpa33 glycoprotein A33 transmembrane IAGP MGI PMID:19856415 NCBI chr 1:165,957,790...165,994,079
Ensembl chr 1:165,957,807...165,994,079 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:18372904 PMID:19897935 PMID:22896614 PMID:23222438 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294 		JBrowse link
G Guca2a guanylate cyclase activator 2a (guanylin) IAGP MGI PMID:12466132 NCBI chr 4:119,494,929...119,496,662
Ensembl chr 4:119,494,901...119,496,668 		JBrowse link
G Hdac2 histone deacetylase 2 IAGP MGI PMID:17909008 NCBI chr10:36,850,293...36,877,885
Ensembl chr10:36,850,540...36,877,885 		JBrowse link
G Igf2bp1 insulin-like growth factor 2 mRNA binding protein 1 IAGP MGI PMID:15121863 NCBI chr11:95,847,989...95,896,770
Ensembl chr11:95,847,989...95,896,766 		JBrowse link
G Il17re interleukin 17 receptor E IAGP MGI PMID:21993848 NCBI chr 6:113,435,659...113,447,719
Ensembl chr 6:113,435,445...113,447,719 		JBrowse link
G Il22 interleukin 22 IAGP MGI PMID:18264109 NCBI chr10:118,040,456...118,045,952
Ensembl chr10:118,040,847...118,045,952 		JBrowse link
G Il23r interleukin 23 receptor IAGP MGI PMID:22089030 NCBI chr 6:67,399,906...67,468,838
Ensembl chr 6:67,399,916...67,468,839 		JBrowse link
G Klf5 Kruppel-like transcription factor 5 IAGP MGI PMID:18395082 NCBI chr14:99,536,127...99,550,848
Ensembl chr14:99,536,127...99,552,472 		JBrowse link
G Kras Kirsten rat sarcoma viral oncogene homolog IAGP MGI PMID:11323676 PMID:18372904 PMID:30952657 NCBI chr 6:145,162,425...145,197,631
Ensembl chr 6:145,162,425...145,195,965 		JBrowse link
G Ltbp4 latent transforming growth factor beta binding protein 4 IAGP MGI PMID:12208849 NCBI chr 7:27,004,566...27,039,142
Ensembl chr 7:27,004,561...27,037,117 		JBrowse link
G Lypd8 LY6/PLAUR domain containing 8 IAGP MGI PMID:27027293 NCBI chr11:58,269,869...58,281,365
Ensembl chr11:58,269,869...58,281,554 		JBrowse link
G Misp mitotic spindle positioning IAGP MGI PMID:36596561 NCBI chr10:79,656,853...79,666,286
Ensembl chr10:79,656,823...79,666,324 		JBrowse link
G Muc2 mucin 2 IAGP MGI PMID:18318598 PMID:24945909 NCBI chr 7:141,276,583...141,308,428
Ensembl chr 7:141,276,583...141,308,430 		JBrowse link
G Ndor1 NADPH dependent diflavin oxidoreductase 1 IAGP MGI PMID:30254136 NCBI chr 2:25,134,825...25,145,458
Ensembl chr 2:25,134,833...25,146,034
Ensembl chr 2:25,134,833...25,146,034
Ensembl chr 2:25,134,833...25,146,034 		JBrowse link
G Nlrp6 NLR family, pyrin domain containing 6 IAGP MGI PMID:21565393 NCBI chr 7:140,500,777...140,509,105
Ensembl chr 7:140,500,815...140,509,105 		JBrowse link
G Pi4ka phosphatidylinositol 4-kinase alpha IAGP MGI PMID:22896614 NCBI chr16:17,098,215...17,224,178
Ensembl chr16:17,098,215...17,224,178 		JBrowse link
G Prkdc protein kinase, DNA activated, catalytic polypeptide IAGP MGI PMID:9990036 NCBI chr16:15,455,698...15,660,103
Ensembl chr16:15,455,730...15,660,099 		JBrowse link
G Prss8 serine protease 8 (prostasin) IAGP MGI PMID:29617460 NCBI chr 7:127,524,889...127,529,266
Ensembl chr 7:127,524,888...127,529,276 		JBrowse link
G Pycard PYD and CARD domain containing IAGP MGI PMID:21565393 NCBI chr 7:127,590,545...127,593,039
Ensembl chr 7:127,588,880...127,593,039 		JBrowse link
G Rag2 recombination activating gene 2 IAGP MGI PMID:17923086 PMID:22089030 NCBI chr 2:101,455,057...101,462,873
Ensembl chr 2:101,455,063...101,462,874 		JBrowse link
G Rnpc3 RNA-binding region (RNP1, RRM) containing 3 IAGP MGI PMID:30254136 NCBI chr 3:113,398,716...113,423,798
Ensembl chr 3:113,398,716...113,423,798 		JBrowse link
G Rprd1b regulation of nuclear pre-mRNA domain containing 1B IAGP MGI PMID:33431892 NCBI chr 2:157,870,395...157,920,127
Ensembl chr 2:157,870,417...157,974,217 		JBrowse link
G Sav1 salvador family WW domain containing 1 IAGP MGI PMID:18369314 PMID:21041407 NCBI chr12:70,011,786...70,033,864
Ensembl chr12:70,011,786...70,033,776 		JBrowse link
G Slc26a3 solute carrier family 26, member 3 IAGP MGI PMID:17001077 NCBI chr12:31,483,141...31,523,921
Ensembl chr12:31,440,870...31,523,916 		JBrowse link
G Slc5a6 solute carrier family 5 (sodium-dependent vitamin transporter), member 6 IAGP MGI PMID:23104561 PMID:31369292 NCBI chr 5:31,193,380...31,206,268
Ensembl chr 5:31,193,380...31,206,268 		JBrowse link
G Spint1 serine protease inhibitor, Kunitz type 1 IAGP MGI PMID:21840293 NCBI chr 2:119,067,841...119,079,995
Ensembl chr 2:119,067,843...119,080,008 		JBrowse link
G Spint2 serine protease inhibitor, Kunitz type 2 IAGP MGI PMID:29617460 NCBI chr 7:28,955,755...28,981,484
Ensembl chr 7:28,955,748...28,981,337 		JBrowse link
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 IAGP MGI PMID:19897935 NCBI chr12:87,351,832...87,435,129
Ensembl chr12:87,351,832...87,435,129 		JBrowse link
G St14 suppression of tumorigenicity 14 (colon carcinoma) IAGP MGI PMID:19717635 NCBI chr 9:30,999,886...31,043,138
Ensembl chr 9:31,000,698...31,043,149 		JBrowse link
G Tbx21 T-box 21 IAGP MGI PMID:17923086 NCBI chr11:96,988,833...97,006,157
Ensembl chr11:96,988,897...97,006,157 		JBrowse link
G Tlr2 toll-like receptor 2 IAGP MGI PMID:20885960 NCBI chr 3:83,743,579...83,749,045
Ensembl chr 3:83,743,579...83,749,074 		JBrowse link
G Tmem258 transmembrane protein 258 IAGP MGI PMID:27974209 NCBI chr19:10,181,566...10,185,188
Ensembl chr19:10,181,378...10,185,188 		JBrowse link
G Tmpo thymopoietin IAGP MGI PMID:18849980 NCBI chr10:90,983,433...91,017,614
Ensembl chr10:90,983,433...91,017,177 		JBrowse link
G Tnfaip8 tumor necrosis factor, alpha-induced protein 8 IAGP MGI PMID:37459052 NCBI chr18:50,112,494...50,226,296
Ensembl chr18:50,112,494...50,240,240 		JBrowse link
G Tnfaip8l1 tumor necrosis factor, alpha-induced protein 8-like 1 IAGP MGI PMID:37459052 NCBI chr17:56,469,439...56,491,249
Ensembl chr17:56,469,477...56,480,955 		JBrowse link
G Twist2 twist basic helix-loop-helix transcription factor 2 IAGP MGI PMID:24855947 NCBI chr 1:91,729,183...91,775,756
Ensembl chr 1:91,729,183...91,775,750 		JBrowse link
G Vdr vitamin D (1,25-dihydroxyvitamin D3) receptor IAGP MGI PMID:11532865 PMID:17962355 NCBI chr15:97,752,308...97,806,177
Ensembl chr15:97,752,306...97,808,511 		JBrowse link
abnormal large intestine goblet cell morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyrib CYFIP related Rac1 interactor B IAGP MGI PMID:31285585 NCBI chr15:63,800,943...63,932,627
Ensembl chr15:63,800,946...63,932,327 		JBrowse link
G Rprd1b regulation of nuclear pre-mRNA domain containing 1B IAGP MGI PMID:33431892 NCBI chr 2:157,870,395...157,920,127
Ensembl chr 2:157,870,417...157,974,217 		JBrowse link
abnormal Paneth cell morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC, WNT signaling pathway regulator IAGP MGI PMID:26214133 NCBI chr18:34,353,350...34,455,243
Ensembl chr18:34,353,977...34,455,605 		JBrowse link
G Api5 apoptosis inhibitor 5 IAGP MGI PMID:36198790 NCBI chr 2:94,242,073...94,268,490
Ensembl chr 2:94,242,027...94,268,481 		JBrowse link
G Atg16l1 autophagy related 16 like 1 IAGP MGI PMID:18849966 PMID:23973919 PMID:24089213 PMID:36198790 NCBI chr 1:87,683,730...87,720,150
Ensembl chr 1:87,683,592...87,720,150 		JBrowse link
G Atg5 autophagy related 5 IAGP MGI PMID:18849966 NCBI chr10:44,144,325...44,240,295
Ensembl chr10:44,144,354...44,240,287 		JBrowse link
G Atg7 autophagy related 7 IAGP MGI PMID:26214133 NCBI chr 6:114,620,075...114,837,565
Ensembl chr 6:114,620,058...114,837,575 		JBrowse link
G Cdc42 cell division cycle 42 IAGP MGI PMID:22354172 NCBI chr 4:137,047,011...137,085,007
Ensembl chr 4:137,047,007...137,085,031 		JBrowse link
G Ephb2 Eph receptor B2 IAGP MGI PMID:16777604 NCBI chr 4:136,374,850...136,563,637
Ensembl chr 4:136,374,850...136,563,299 		JBrowse link
G Ephb3 Eph receptor B3 IAGP MGI PMID:16777604 NCBI chr16:21,023,530...21,042,054
Ensembl chr16:21,023,505...21,042,055 		JBrowse link
G Fen1 flap structure specific endonuclease 1 IAGP MGI PMID:12119409 NCBI chr19:10,176,496...10,181,757
Ensembl chr19:10,176,496...10,181,533 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:24339869 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294 		JBrowse link
G Hprt1 hypoxanthine phosphoribosyltransferase 1 IAGP MGI PMID:24667635 NCBI chr  X:52,076,955...52,110,537
Ensembl chr  X:52,077,014...52,110,536 		JBrowse link
G Lgr5 leucine rich repeat containing G protein coupled receptor 5 IAGP MGI PMID:22510880 NCBI chr10:115,286,219...115,423,685
Ensembl chr10:115,286,216...115,423,685 		JBrowse link
G Lpo lactoperoxidase IAGP MGI PMID:34127712 NCBI chr11:87,697,254...87,716,750
Ensembl chr11:87,697,254...87,719,115 		JBrowse link
G Nrbp1 nuclear receptor binding protein 1 IAGP MGI PMID:22510880 NCBI chr 5:31,398,227...31,408,910
Ensembl chr 5:31,398,208...31,408,910 		JBrowse link
G Nrip1 nuclear receptor interacting protein 1 IAGP MGI PMID:24667635 NCBI chr16:76,084,291...76,170,930
Ensembl chr16:76,084,288...76,170,715 		JBrowse link
G Pten phosphatase and tensin homolog IAGP MGI PMID:19168705 NCBI chr19:32,734,977...32,803,560
Ensembl chr19:32,734,897...32,803,560 		JBrowse link
G Rab8a RAB8A, member RAS oncogene family IAGP MGI PMID:22354172 NCBI chr 8:72,915,044...72,935,210
Ensembl chr 8:72,915,044...72,937,748 		JBrowse link
G Sec23b SEC23 homolog B, COPII coat complex component IAGP MGI PMID:22745161 NCBI chr 2:144,398,165...144,432,673
Ensembl chr 2:144,398,149...144,432,669 		JBrowse link
G Slc39a4 solute carrier family 39 (zinc transporter), member 4 IAGP MGI PMID:22737083 NCBI chr15:76,496,583...76,501,579
Ensembl chr15:76,496,583...76,501,584 		JBrowse link
G Spdef SAM pointed domain containing ets transcription factor IAGP MGI PMID:19549527 NCBI chr17:27,933,416...27,949,977
Ensembl chr17:27,933,326...27,947,929 		JBrowse link
G Tcrd T cell receptor delta chain IAGP MGI PMID:36198790 NCBI chr14:54,183,530...54,396,655 JBrowse link
G Xbp1 X-box binding protein 1 IAGP MGI PMID:24089213 NCBI chr11:5,470,641...5,475,993
Ensembl chr11:5,470,659...5,475,893 		JBrowse link
G Yipf6 Yip1 domain family, member 6 IAGP MGI PMID:22802641 NCBI chr  X:97,979,922...97,992,627
Ensembl chr  X:97,979,922...97,992,623 		JBrowse link
abnormal small intestine crypts of Lieberkuhn morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap1m2 adaptor protein complex AP-1, mu 2 subunit IAGP MGI PMID:23684748 NCBI chr 9:21,206,753...21,223,617
Ensembl chr 9:21,205,571...21,223,633 		JBrowse link
G Apc APC, WNT signaling pathway regulator IAGP MGI PMID:15716339 NCBI chr18:34,353,350...34,455,243
Ensembl chr18:34,353,977...34,455,605 		JBrowse link
G Areg amphiregulin IAGP MGI PMID:11438495 NCBI chr 5:91,287,458...91,296,291
Ensembl chr 5:91,287,458...91,296,291 		JBrowse link
G Ascl2 achaete-scute family bHLH transcription factor 2 IAGP MGI PMID:19269367 NCBI chr 7:142,520,559...142,523,001
Ensembl chr 7:142,520,566...142,523,001 		JBrowse link
G Atoh1 atonal bHLH transcription factor 1 IAGP MGI PMID:17570220 NCBI chr 6:64,706,109...64,708,229
Ensembl chr 6:64,706,109...64,708,229 		JBrowse link
G B4galt1 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 IAGP MGI PMID:9155011 NCBI chr 4:40,804,602...40,855,711
Ensembl chr 4:40,804,602...40,854,005 		JBrowse link
G Bcl2 B cell leukemia/lymphoma 2 IAGP MGI PMID:7812968 NCBI chr 1:106,465,906...106,642,020
Ensembl chr 1:106,465,908...106,642,004 		JBrowse link
G Car2 carbonic anhydrase 2 IAGP MGI PMID:16217040 NCBI chr 3:14,951,329...14,965,830
Ensembl chr 3:14,951,333...14,965,830 		JBrowse link
G Car9 carbonic anhydrase 9 IAGP MGI PMID:16217040 NCBI chr 4:43,507,026...43,513,729
Ensembl chr 4:43,506,966...43,513,729 		JBrowse link
G Cdc25a cell division cycle 25A IAGP MGI PMID:19273838 PMID:21283624 NCBI chr 9:109,704,545...109,722,963
Ensembl chr 9:109,704,647...109,722,963 		JBrowse link
G Cdc25b cell division cycle 25B IAGP MGI PMID:19273838 PMID:21283624 NCBI chr 2:131,028,356...131,040,431
Ensembl chr 2:131,028,869...131,040,417 		JBrowse link
G Cdc25c cell division cycle 25C IAGP MGI PMID:19273838 PMID:21283624 NCBI chr18:34,866,046...34,884,644
Ensembl chr18:34,866,046...34,884,586 		JBrowse link
G Cdk7 cyclin dependent kinase 7 IAGP MGI PMID:22505032 NCBI chr13:100,833,532...100,867,454
Ensembl chr13:100,839,139...100,867,447 		JBrowse link
G Cftr cystic fibrosis transmembrane conductance regulator IAGP MGI PMID:7545494 PMID:22711878 NCBI chr 6:18,170,686...18,322,769
Ensembl chr 6:18,170,686...18,322,767 		JBrowse link
G Cldn15 claudin 15 IAGP MGI PMID:18242218 NCBI chr 5:136,996,723...137,004,699
Ensembl chr 5:136,995,470...137,004,712 		JBrowse link
G Ctps1 cytidine 5'-triphosphate synthase 1 IAGP MGI PMID:38438357 NCBI chr 4:120,397,065...120,427,473
Ensembl chr 4:120,397,065...120,427,473 		JBrowse link
G Cul4a cullin 4A IAGP MGI PMID:18339895 NCBI chr 8:13,155,623...13,197,940
Ensembl chr 8:13,155,621...13,197,940 		JBrowse link
G Egf epidermal growth factor IAGP MGI PMID:11438495 NCBI chr 3:129,471,223...129,548,971
Ensembl chr 3:129,471,214...129,548,965 		JBrowse link
G Enpp7 ectonucleotide pyrophosphatase/phosphodiesterase 7 IAGP MGI PMID:21177474 NCBI chr11:118,879,007...118,884,047
Ensembl chr11:118,879,014...118,884,047 		JBrowse link
G Fgf9 fibroblast growth factor 9 IAGP MGI PMID:18653563 NCBI chr14:58,308,543...58,350,311
Ensembl chr14:58,308,004...58,350,177 		JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 IAGP MGI PMID:18653563 NCBI chr 8:26,008,808...26,067,819
Ensembl chr 8:26,003,670...26,065,734 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 IAGP MGI PMID:18653563 NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079 		JBrowse link
G Foxl1 forkhead box L1 IAGP MGI PMID:9203584 NCBI chr 8:121,854,572...121,857,383
Ensembl chr 8:121,854,679...121,857,383 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:19273838 PMID:19897935 PMID:22896614 PMID:22902753 PMID:23222438 More... NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294 		JBrowse link
G Lgr5 leucine rich repeat containing G protein coupled receptor 5 IAGP MGI PMID:22902753 PMID:32052574 NCBI chr10:115,286,219...115,423,685
Ensembl chr10:115,286,216...115,423,685 		JBrowse link
G Mcm2 minichromosome maintenance complex component 2 IAGP MGI PMID:17717065 NCBI chr 6:88,860,456...88,875,762
Ensembl chr 6:88,860,456...88,875,762 		JBrowse link
G Mex3a mex3 RNA binding family member A IAGP MGI PMID:32052574 NCBI chr 3:88,439,253...88,448,701
Ensembl chr 3:88,439,702...88,448,703 		JBrowse link
G Ndor1 NADPH dependent diflavin oxidoreductase 1 IAGP MGI PMID:22505032 PMID:30254136 NCBI chr 2:25,134,825...25,145,458
Ensembl chr 2:25,134,833...25,146,034
Ensembl chr 2:25,134,833...25,146,034
Ensembl chr 2:25,134,833...25,146,034 		JBrowse link
G Neurog3 neurogenin 3 IAGP MGI PMID:20364088 NCBI chr10:61,968,869...61,970,542
Ensembl chr10:61,968,869...61,970,542 		JBrowse link
G Orc1 origin recognition complex, subunit 1 IAGP MGI PMID:29967292 NCBI chr 4:108,436,651...108,472,030
Ensembl chr 4:108,436,620...108,472,030 		JBrowse link
G Pcid2 PCI domain containing 2 IAGP MGI PMID:18339895 NCBI chr 8:13,125,476...13,155,343
Ensembl chr 8:13,127,189...13,155,459 		JBrowse link
G Pi4ka phosphatidylinositol 4-kinase alpha IAGP MGI PMID:22896614 NCBI chr16:17,098,215...17,224,178
Ensembl chr16:17,098,215...17,224,178 		JBrowse link
G Pten phosphatase and tensin homolog IAGP MGI PMID:19168705 NCBI chr19:32,734,977...32,803,560
Ensembl chr19:32,734,897...32,803,560 		JBrowse link
G Ptgs1 prostaglandin-endoperoxide synthase 1 IAGP MGI PMID:11052981 NCBI chr 2:36,106,758...36,142,287
Ensembl chr 2:36,120,438...36,142,284 		JBrowse link
G Rc3h1 RING CCCH (C3H) domains 1 IAGP MGI PMID:23451046 NCBI chr 1:160,733,981...160,802,546
Ensembl chr 1:160,733,988...160,802,548 		JBrowse link
G Rela v-rel reticuloendotheliosis viral oncogene homolog A (avian) IAGP MGI PMID:18250470 NCBI chr19:5,686,993...5,698,162
Ensembl chr19:5,687,511...5,698,158 		JBrowse link
G Rnf43 ring finger protein 43 IAGP MGI PMID:22895187 NCBI chr11:87,553,913...87,626,365
Ensembl chr11:87,553,548...87,626,365 		JBrowse link
G Rnpc3 RNA-binding region (RNP1, RRM) containing 3 IAGP MGI PMID:30254136 NCBI chr 3:113,398,716...113,423,798
Ensembl chr 3:113,398,716...113,423,798 		JBrowse link
G Sav1 salvador family WW domain containing 1 IAGP MGI PMID:21041407 NCBI chr12:70,011,786...70,033,864
Ensembl chr12:70,011,786...70,033,776 		JBrowse link
G Slc39a4 solute carrier family 39 (zinc transporter), member 4 IAGP MGI PMID:22737083 NCBI chr15:76,496,583...76,501,579
Ensembl chr15:76,496,583...76,501,584 		JBrowse link
G Slc6a4 solute carrier family 6 (neurotransmitter transporter, serotonin), member 4 IAGP MGI PMID:27111230 NCBI chr11:76,889,423...76,923,169
Ensembl chr11:76,889,429...76,923,166 		JBrowse link
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 IAGP MGI PMID:19897935 NCBI chr12:87,351,832...87,435,129
Ensembl chr12:87,351,832...87,435,129 		JBrowse link
G Stx2 syntaxin 2 IAGP MGI PMID:16710473 NCBI chr 5:129,061,621...129,085,664
Ensembl chr 5:129,061,621...129,085,638 		JBrowse link
G Tgfa transforming growth factor alpha IAGP MGI PMID:11438495 NCBI chr 6:86,172,020...86,252,726
Ensembl chr 6:86,172,205...86,252,701 		JBrowse link
G Tnfaip3 tumor necrosis factor, alpha-induced protein 3 IAGP MGI PMID:20530205 NCBI chr10:18,876,658...18,891,158
Ensembl chr10:18,876,658...18,891,405 		JBrowse link
G Twist2 twist basic helix-loop-helix transcription factor 2 IAGP MGI PMID:18653563 NCBI chr 1:91,729,183...91,775,756
Ensembl chr 1:91,729,183...91,775,750 		JBrowse link
G Znrf3 zinc and ring finger 3 IAGP MGI PMID:22895187 NCBI chr11:5,226,329...5,394,847
Ensembl chr11:5,226,324...5,394,847 		JBrowse link
absent Paneth cells term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc42 cell division cycle 42 IAGP MGI PMID:22354172 NCBI chr 4:137,047,011...137,085,007
Ensembl chr 4:137,047,007...137,085,031 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:17980593 PMID:22354172 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294 		JBrowse link
G Kras Kirsten rat sarcoma viral oncogene homolog IAGP MGI PMID:30952657 NCBI chr 6:145,162,425...145,197,631
Ensembl chr 6:145,162,425...145,195,965 		JBrowse link
G Lgr5 leucine rich repeat containing G protein coupled receptor 5 IAGP MGI PMID:22354172 NCBI chr10:115,286,219...115,423,685
Ensembl chr10:115,286,216...115,423,685 		JBrowse link
G Tcf7l2 transcription factor 7 like 2, T cell specific, HMG box IAGP MGI PMID:22393260 NCBI chr19:55,730,227...55,922,091
Ensembl chr19:55,730,252...55,922,086 		JBrowse link
G Xbp1 X-box binding protein 1 IAGP MGI PMID:18775308 NCBI chr11:5,470,641...5,475,993
Ensembl chr11:5,470,659...5,475,893 		JBrowse link
crypts of Lieberkuhn abscesses term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb1a ATP-binding cassette, sub-family B member 1A IAGP MGI PMID:9820555 NCBI chr 5:8,617,091...8,798,575
Ensembl chr 5:8,710,077...8,798,575 		JBrowse link
G Cftr cystic fibrosis transmembrane conductance regulator IAGP MGI PMID:7505691 NCBI chr 6:18,170,686...18,322,769
Ensembl chr 6:18,170,686...18,322,767 		JBrowse link
G Cyld CYLD lysine 63 deubiquitinase IAGP MGI PMID:21804564 NCBI chr 8:89,423,506...89,478,574
Ensembl chr 8:89,423,675...89,478,573 		JBrowse link
G Fadd Fas associated via death domain IAGP MGI PMID:21804564 NCBI chr 7:144,132,060...144,136,178
Ensembl chr 7:144,131,055...144,136,200 		JBrowse link
G Foxp3 forkhead box P3 IAGP MGI PMID:16275384 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484 		JBrowse link
G Gfus GDP-L-fucose synthase IAGP MGI PMID:12186857 NCBI chr15:75,796,532...75,801,613
Ensembl chr15:75,796,525...75,801,681 		JBrowse link
G Gpx1 glutathione peroxidase 1 IAGP MGI PMID:11518697 NCBI chr 9:108,216,279...108,217,541
Ensembl chr 9:108,216,102...108,217,542 		JBrowse link
G Gpx2 glutathione peroxidase 2 IAGP MGI PMID:11518697 NCBI chr12:76,839,109...76,842,328
Ensembl chr12:76,839,107...76,842,273 		JBrowse link
G Ikbkg inhibitor of kappaB kinase gamma IAGP MGI PMID:21804564 NCBI chr  X:73,436,883...73,498,013
Ensembl chr  X:73,436,896...73,497,460 		JBrowse link
G Il10 interleukin 10 IAGP MGI PMID:15534372 NCBI chr 1:130,947,459...130,952,707
Ensembl chr 1:130,947,582...130,952,711 		JBrowse link
G Itgav integrin alpha V IAGP MGI PMID:17895374 NCBI chr 2:83,554,796...83,637,261
Ensembl chr 2:83,554,741...83,637,260 		JBrowse link
G Pik3cd phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta IAGP MGI PMID:12130661 NCBI chr 4:149,733,625...149,787,023
Ensembl chr 4:149,733,625...149,787,028 		JBrowse link
G Rc3h1 RING CCCH (C3H) domains 1 IAGP MGI PMID:23451046 NCBI chr 1:160,733,981...160,802,546
Ensembl chr 1:160,733,988...160,802,548 		JBrowse link
G Slc5a6 solute carrier family 5 (sodium-dependent vitamin transporter), member 6 IAGP MGI PMID:31369292 NCBI chr 5:31,193,380...31,206,268
Ensembl chr 5:31,193,380...31,206,268 		JBrowse link
G Tcra T cell receptor alpha chain IAGP MGI PMID:8104709 NCBI chr14:52,665,424...54,461,655 JBrowse link
G Tgfb1 transforming growth factor, beta 1 IAGP MGI PMID:17481928 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502 		JBrowse link
G Was Wiskott-Aldrich syndrome IAGP MGI PMID:9697838 NCBI chr  X:7,947,705...7,956,730
Ensembl chr  X:7,947,692...7,956,737 		JBrowse link
G Wipf1 WAS/WASL interacting protein family, member 1 IAGP MGI PMID:17086554 NCBI chr 2:73,259,954...73,359,831
Ensembl chr 2:73,259,954...73,360,078 		JBrowse link
G Xbp1 X-box binding protein 1 IAGP MGI PMID:18775308 NCBI chr11:5,470,641...5,475,993
Ensembl chr11:5,470,659...5,475,893 		JBrowse link
decreased colon goblet cell number term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts18 ADAM metallopeptidase with thrombospondin type 1 motif 18 IAGP MGI PMID:28145888 NCBI chr 8:114,423,755...114,575,975
Ensembl chr 8:114,423,758...114,575,370 		JBrowse link
G Gpa33 glycoprotein A33 transmembrane IAGP MGI PMID:19856415 NCBI chr 1:165,957,790...165,994,079
Ensembl chr 1:165,957,807...165,994,079 		JBrowse link
G Misp mitotic spindle positioning IAGP MGI PMID:36596561 NCBI chr10:79,656,853...79,666,286
Ensembl chr10:79,656,823...79,666,324 		JBrowse link
G Prss8 serine protease 8 (prostasin) IAGP MGI PMID:29617460 NCBI chr 7:127,524,889...127,529,266
Ensembl chr 7:127,524,888...127,529,276 		JBrowse link
G Slc12a2 solute carrier family 12, member 2 IAGP MGI PMID:31655271 NCBI chr18:58,011,505...58,079,893
Ensembl chr18:58,011,750...58,079,893 		JBrowse link
G Spint2 serine protease inhibitor, Kunitz type 2 IAGP MGI PMID:29617460 NCBI chr 7:28,955,755...28,981,484
Ensembl chr 7:28,955,748...28,981,337 		JBrowse link
G Tvp23b trans-golgi network vesicle protein 23B IAGP MGI PMID:37339972 NCBI chr11:62,770,281...62,786,012
Ensembl chr11:62,770,281...62,807,606 		JBrowse link
decreased Paneth cell number term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Api5 apoptosis inhibitor 5 IAGP MGI PMID:36198790 NCBI chr 2:94,242,073...94,268,490
Ensembl chr 2:94,242,027...94,268,481 		JBrowse link
G Atg16l1 autophagy related 16 like 1 IAGP MGI PMID:23973919 PMID:36198790 NCBI chr 1:87,683,730...87,720,150
Ensembl chr 1:87,683,592...87,720,150 		JBrowse link
G Cbfa2t2 CBFA2/RUNX1 translocation partner 2 IAGP MGI PMID:16227606 NCBI chr 2:154,278,018...154,381,276
Ensembl chr 2:154,278,401...154,381,276 		JBrowse link
G Cdc42 cell division cycle 42 IAGP MGI PMID:22354172 NCBI chr 4:137,047,011...137,085,007
Ensembl chr 4:137,047,007...137,085,031 		JBrowse link
G Ctnnb1 catenin beta 1 IAGP MGI PMID:15131783 NCBI chr 9:120,762,466...120,789,573
Ensembl chr 9:120,758,282...120,789,573 		JBrowse link
G Cyld CYLD lysine 63 deubiquitinase IAGP MGI PMID:21804564 NCBI chr 8:89,423,506...89,478,574
Ensembl chr 8:89,423,675...89,478,573 		JBrowse link
G Fadd Fas associated via death domain IAGP MGI PMID:21804564 NCBI chr 7:144,132,060...144,136,178
Ensembl chr 7:144,131,055...144,136,200 		JBrowse link
G Htr2a 5-hydroxytryptamine (serotonin) receptor 2A IAGP MGI PMID:11960784 NCBI chr14:74,878,314...74,944,299
Ensembl chr14:74,878,280...74,946,934 		JBrowse link
G Lgr5 leucine rich repeat containing G protein coupled receptor 5 IAGP MGI PMID:27736879 NCBI chr10:115,286,219...115,423,685
Ensembl chr10:115,286,216...115,423,685 		JBrowse link
G Mex3a mex3 RNA binding family member A IAGP MGI PMID:32052574 NCBI chr 3:88,439,253...88,448,701
Ensembl chr 3:88,439,702...88,448,703 		JBrowse link
G Myd88 myeloid differentiation primary response gene 88 IAGP MGI PMID:21804564 NCBI chr 9:119,165,000...119,169,084
Ensembl chr 9:119,165,000...119,170,477 		JBrowse link
G Rprd1b regulation of nuclear pre-mRNA domain containing 1B IAGP MGI PMID:33431892 NCBI chr 2:157,870,395...157,920,127
Ensembl chr 2:157,870,417...157,974,217 		JBrowse link
G Slc39a7 solute carrier family 39 (zinc transporter), member 7 IAGP MGI PMID:27736879 NCBI chr17:34,247,240...34,250,664
Ensembl chr17:34,247,243...34,250,656 		JBrowse link
G Spdef SAM pointed domain containing ets transcription factor IAGP MGI PMID:19549527 NCBI chr17:27,933,416...27,949,977
Ensembl chr17:27,933,326...27,947,929 		JBrowse link
G Stk26 serine/threonine kinase 26 IAGP MGI PMID:34240584 NCBI chr  X:49,930,052...49,981,980
Ensembl chr  X:49,929,924...49,981,974 		JBrowse link
G Tcf7l2 transcription factor 7 like 2, T cell specific, HMG box IAGP MGI PMID:22393260 NCBI chr19:55,730,227...55,922,091
Ensembl chr19:55,730,252...55,922,086 		JBrowse link
G Tcrd T cell receptor delta chain IAGP MGI PMID:36198790 NCBI chr14:54,183,530...54,396,655 JBrowse link
G Tnf tumor necrosis factor IAGP MGI PMID:21804564 NCBI chr17:35,418,343...35,420,983
Ensembl chr17:35,418,357...35,420,983 		JBrowse link
G Tvp23b trans-golgi network vesicle protein 23B IAGP MGI PMID:37339972 NCBI chr11:62,770,281...62,786,012
Ensembl chr11:62,770,281...62,807,606 		JBrowse link
G Xbp1 X-box binding protein 1 IAGP MGI PMID:18775308 NCBI chr11:5,470,641...5,475,993
Ensembl chr11:5,470,659...5,475,893 		JBrowse link
G Yipf6 Yip1 domain family, member 6 IAGP MGI PMID:22802641 NCBI chr  X:97,979,922...97,992,627
Ensembl chr  X:97,979,922...97,992,623 		JBrowse link
dilated crypt of Lieberkuhn term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cftr cystic fibrosis transmembrane conductance regulator IAGP MGI PMID:7505691 PMID:7527588 PMID:7685652 PMID:8605891 PMID:35392567 NCBI chr 6:18,170,686...18,322,769
Ensembl chr 6:18,170,686...18,322,767 		JBrowse link
ectopic Paneth cells term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 IAGP MGI PMID:15131783 NCBI chr 9:120,762,466...120,789,573
Ensembl chr 9:120,758,282...120,789,573 		JBrowse link
G Ephb2 Eph receptor B2 IAGP MGI PMID:19914164 NCBI chr 4:136,374,850...136,563,637
Ensembl chr 4:136,374,850...136,563,299 		JBrowse link
G Ephb3 Eph receptor B3 IAGP MGI PMID:19914164 NCBI chr16:21,023,530...21,042,054
Ensembl chr16:21,023,505...21,042,055 		JBrowse link
G Foxl1 forkhead box L1 IAGP MGI PMID:16469829 NCBI chr 8:121,854,572...121,857,383
Ensembl chr 8:121,854,679...121,857,383 		JBrowse link
G Fzd5 frizzled class receptor 5 IAGP MGI PMID:15778706 NCBI chr 1:64,769,717...64,776,907
Ensembl chr 1:64,769,717...64,776,910 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:22510880 PMID:22902753 PMID:25690852 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294 		JBrowse link
G Klf4 Kruppel-like transcription factor 4 (gut) IAGP MGI PMID:22384261 NCBI chr 4:55,527,137...55,536,984
Ensembl chr 4:55,527,143...55,532,466 		JBrowse link
G Lgr5 leucine rich repeat containing G protein coupled receptor 5 IAGP MGI PMID:22510880 PMID:22902753 NCBI chr10:115,286,219...115,423,685
Ensembl chr10:115,286,216...115,423,685 		JBrowse link
G Nrbp1 nuclear receptor binding protein 1 IAGP MGI PMID:22510880 NCBI chr 5:31,398,227...31,408,910
Ensembl chr 5:31,398,208...31,408,910 		JBrowse link
G Tcf7l2 transcription factor 7 like 2, T cell specific, HMG box IAGP MGI PMID:22393260 NCBI chr19:55,730,227...55,922,091
Ensembl chr19:55,730,252...55,922,086 		JBrowse link
increased colon goblet cell number term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Btbd8 BTB domain containing 8 IAGP MGI PMID:38558797 NCBI chr 5:107,585,796...107,660,426
Ensembl chr 5:107,585,863...107,659,073 		JBrowse link
G Filip1l filamin A interacting protein 1-like IAGP MGI PMID:34417201 NCBI chr16:57,173,376...57,393,167
Ensembl chr16:57,173,456...57,393,489 		JBrowse link
G Lpo lactoperoxidase IAGP MGI PMID:34127712 NCBI chr11:87,697,254...87,716,750
Ensembl chr11:87,697,254...87,719,115 		JBrowse link
G Ndst4 N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4 IAGP MGI PMID:27793051 NCBI chr 3:125,197,678...125,522,550
Ensembl chr 3:125,197,725...125,522,548 		JBrowse link
G Nup35 nucleoporin 35 IAGP MGI PMID:27427419 NCBI chr 2:80,469,156...80,490,415
Ensembl chr 2:80,447,580...80,489,250 		JBrowse link
increased Paneth cell number term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agr2 anterior gradient 2 IAGP MGI PMID:20025862 NCBI chr12:36,042,924...36,054,080
Ensembl chr12:36,042,906...36,054,086 		JBrowse link
G Cdx2 caudal type homeobox 2 IAGP MGI PMID:22190642 NCBI chr 5:147,237,710...147,244,059
Ensembl chr 5:147,237,615...147,244,080 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:20025862 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294 		JBrowse link
G Klf4 Kruppel-like transcription factor 4 (gut) IAGP MGI PMID:22384261 NCBI chr 4:55,527,137...55,536,984
Ensembl chr 4:55,527,143...55,532,466 		JBrowse link
G Lgr5 leucine rich repeat containing G protein coupled receptor 5 IAGP MGI PMID:22190642 NCBI chr10:115,286,219...115,423,685
Ensembl chr10:115,286,216...115,423,685 		JBrowse link
G Lpo lactoperoxidase IAGP MGI PMID:34127712 NCBI chr11:87,697,254...87,716,750
Ensembl chr11:87,697,254...87,719,115 		JBrowse link
G Rnf43 ring finger protein 43 IAGP MGI PMID:22895187 NCBI chr11:87,553,913...87,626,365
Ensembl chr11:87,553,548...87,626,365 		JBrowse link
G Usp22 ubiquitin specific peptidase 22 IAGP MGI PMID:26431380 NCBI chr11:61,042,607...61,065,885
Ensembl chr11:61,042,611...61,065,881 		JBrowse link
G Znhit1 zinc finger, HIT domain containing 1 IAGP MGI PMID:30842416 NCBI chr 5:137,011,048...137,016,813
Ensembl chr 5:137,011,018...137,016,875 		JBrowse link
G Znrf3 zinc and ring finger 3 IAGP MGI PMID:22895187 NCBI chr11:5,226,329...5,394,847
Ensembl chr11:5,226,324...5,394,847 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 16963
    endocrine/exocrine gland phenotype 3451
      abnormal gland morphology 3210
        abnormal exocrine gland morphology 1111
          abnormal crypts of Lieberkuhn morphology 208
            abnormal intestinal crypt stem cell morphology + 0
            abnormal large intestine crypts of Lieberkuhn morphology + 75
            abnormal small intestine crypts of Lieberkuhn morphology + 94
            crypts of Lieberkuhn abscesses 19
            dilated crypt of Lieberkuhn 1
Path 2
Term Annotations click to browse term
  mammalian phenotype 16963
    digestive/alimentary phenotype 1913
      abnormal digestive system morphology 1569
        abnormal intestine morphology 684
          abnormal intestinal mucosa morphology 265
            abnormal crypts of Lieberkuhn morphology 208
              abnormal intestinal crypt stem cell morphology + 0
              abnormal large intestine crypts of Lieberkuhn morphology + 75
              abnormal small intestine crypts of Lieberkuhn morphology + 94
              crypts of Lieberkuhn abscesses 19
              dilated crypt of Lieberkuhn 1
paths to the root