MAMMALIAN PHENOTYPE - ANNOTATIONS
The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term: abnormal scapula morphology
Accession: MP:0000149
browse the term
Definition: any structural anomaly of either or both of the large, flat bones of the back part of the shoulder
Synonyms: narrow_synonym: scapula dysplasia
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Alx1
ALX homeobox 1
IAGP
MGI
PMID:15728667
NCBI chr10:102,834,564...102,865,501
Ensembl chr10:102,834,568...102,866,076
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Alx3
aristaless-like homeobox 3
IAGP
MGI
PMID:15728667
NCBI chr 3:107,502,347...107,513,191
Ensembl chr 3:107,502,347...107,513,092
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Alx4
aristaless-like homeobox 4
IAGP
MGI
PMID:15728667
NCBI chr 2:93,472,779...93,511,686
Ensembl chr 2:93,472,729...93,511,684
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Bmi1
Bmi1 polycomb ring finger oncogene
IAGP
MGI
PMID:11290297
NCBI chr 2:18,681,953...18,691,440
Ensembl chr 2:18,681,829...18,691,440
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Bmp2
bone morphogenetic protein 2
IAGP
MGI
PMID:17194222
NCBI chr 2:133,394,079...133,404,816
Ensembl chr 2:133,394,079...133,404,805
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Bmp7
bone morphogenetic protein 7
IAGP
MGI
PMID:10631182 PMID:17194222
NCBI chr 2:172,709,805...172,782,114
Ensembl chr 2:172,709,805...172,782,114
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Bmper
BMP-binding endothelial regulator
IAGP
MGI
PMID:17035289
NCBI chr 9:23,134,372...23,396,511
Ensembl chr 9:23,134,372...23,396,496
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Bmpr1b
bone morphogenetic protein receptor, type 1B
IAGP
MGI
PMID:10631182
NCBI chr 3:141,540,230...141,875,335
Ensembl chr 3:141,542,897...141,875,186
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Cbfb
core binding factor beta
IAGP
MGI
PMID:16940420
NCBI chr 8:105,897,306...105,944,621
Ensembl chr 8:105,897,306...105,944,621
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Cbx2
chromobox 2
IAGP
MGI
PMID:9043087
NCBI chr11:118,913,845...118,922,101
Ensembl chr11:118,913,788...118,922,096
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Cdkn1a
cyclin dependent kinase inhibitor 1A
IAGP
MGI
PMID:11076674
NCBI chr17:29,309,953...29,319,696
Ensembl chr17:29,309,950...29,319,701
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Col2a1
collagen, type II, alpha 1
IAGP
MGI
PMID:24475193
NCBI chr15:97,873,483...97,902,525
Ensembl chr15:97,873,483...97,902,576
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Cxxc5
CXXC finger 5
IAGP
MGI
PMID:25633194
NCBI chr18:35,962,432...35,994,746
Ensembl chr18:35,962,450...35,994,741
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Cyp27b1
cytochrome P450, family 27, subfamily b, polypeptide 1
IEA
MGI
NCBI chr10:126,884,115...126,891,897
Ensembl chr10:126,884,119...126,888,875
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Enpp1
ectonucleotide pyrophosphatase/phosphodiesterase 1
IEA
MGI
NCBI chr10:24,513,812...24,588,057
Ensembl chr10:24,513,812...24,588,057
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Fermt2
fermitin family member 2
IAGP
MGI
PMID:26151572
NCBI chr14:45,696,252...45,767,767
Ensembl chr14:45,696,252...45,767,575
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Fgf10
fibroblast growth factor 10
IAGP
MGI
PMID:9916808
NCBI chr13:118,851,199...118,928,651
Ensembl chr13:118,806,327...118,928,651
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Fgfr2
fibroblast growth factor receptor 2
IAGP
MGI
PMID:11180951
NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079
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Foxc1
forkhead box C1
IEA
MGI
NCBI chr13:31,990,629...31,994,618
Ensembl chr13:31,990,616...31,996,459
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Gli3
GLI-Kruppel family member GLI3
IAGP
MGI
PMID:15728667 PMID:23792766
NCBI chr13:15,638,308...15,904,611
Ensembl chr13:15,637,820...15,904,611
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Hectd2
HECT domain E3 ubiquitin protein ligase 2
IEA
MGI
NCBI chr19:36,531,420...36,598,535
Ensembl chr19:36,532,039...36,598,535
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Hoxb5
homeobox B5
IAGP
MGI
PMID:7828847
NCBI chr11:96,194,338...96,196,947
Ensembl chr11:96,194,162...96,196,947
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Lmna
lamin A
IAGP
MGI
PMID:12748643
NCBI chr 3:88,388,455...88,413,842
Ensembl chr 3:88,387,454...88,417,263
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Morc2a
microrchidia 2A
IEA
MGI
NCBI chr11:3,599,132...3,640,477
Ensembl chr11:3,599,191...3,640,477
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Pax1
paired box 1
IAGP
MGI
PMID:9671740 PMID:16093716 PMID:24538930
NCBI chr 2:147,203,850...147,216,972
Ensembl chr 2:147,203,845...147,235,215
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Pbx1
pre B cell leukemia homeobox 1
IAGP
MGI
PMID:11566859 PMID:22560297
NCBI chr 1:167,946,933...168,259,898
Ensembl chr 1:167,946,933...168,259,839
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Pcgf2
polycomb group ring finger 2
IAGP
MGI
PMID:11290297
NCBI chr11:97,579,647...97,593,260
Ensembl chr11:97,579,649...97,591,323
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Pdgfa
platelet derived growth factor, alpha
IAGP
MGI
PMID:15361870
NCBI chr 5:138,961,761...138,986,336
Ensembl chr 5:138,961,769...138,983,125
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Pdgfc
platelet-derived growth factor, C polypeptide
IAGP
MGI
PMID:15361870
NCBI chr 3:80,943,723...81,121,347
Ensembl chr 3:80,943,723...81,121,347
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Pdgfra
platelet derived growth factor receptor, alpha polypeptide
IAGP
MGI
PMID:9226440
NCBI chr 5:75,311,988...75,358,867
Ensembl chr 5:75,312,953...75,358,876
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Pkdcc
protein kinase domain containing, cytoplasmic
IAGP
MGI
PMID:23792766
NCBI chr17:83,522,708...83,532,496
Ensembl chr17:83,522,721...83,532,499
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Rara
retinoic acid receptor, alpha
IAGP
MGI
PMID:7607067
NCBI chr11:98,818,626...98,865,768
Ensembl chr11:98,818,644...98,865,768
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Rarg
retinoic acid receptor, gamma
IAGP
MGI
PMID:7607067
NCBI chr15:102,143,373...102,165,891
Ensembl chr15:102,143,373...102,165,952
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Rb1
RB transcriptional corepressor 1
IAGP
MGI
PMID:11076674
NCBI chr14:73,430,298...73,563,446
Ensembl chr14:73,421,113...73,563,262
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Rspo2
R-spondin 2
IAGP
MGI
PMID:22610508
NCBI chr15:42,884,184...43,034,990
Ensembl chr15:42,884,190...43,034,222
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Rspo3
R-spondin 3
IAGP
MGI
PMID:22610508
NCBI chr10:29,329,102...29,411,863
Ensembl chr10:29,328,412...29,411,863
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Shh
sonic hedgehog
IAGP
MGI
PMID:8270769
NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254
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Sirt1
sirtuin 1
IEA
MGI
NCBI chr10:63,154,784...63,174,814
Ensembl chr10:63,154,784...63,217,483
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Smpd3
sphingomyelin phosphodiesterase 3, neutral
IAGP
MGI
PMID:8456819
NCBI chr 8:106,979,180...107,064,597
Ensembl chr 8:106,979,180...107,064,620
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Sox9
SRY (sex determining region Y)-box 9
IAGP
MGI
PMID:11371614
NCBI chr11:112,673,036...112,678,583
Ensembl chr11:112,673,050...112,678,586
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Tbx15
T-box 15
IAGP
MGI
PMID:15652702 PMID:15728667
NCBI chr 3:99,147,671...99,261,576
Ensembl chr 3:99,147,697...99,261,575
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Tent5a
terminal nucleotidyltransferase 5A
IAGP
MGI
PMID:26803617
NCBI chr 9:85,202,492...85,209,203
Ensembl chr 9:85,202,492...85,209,401
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Tmem163
transmembrane protein 163
IAGP
MGI
PMID:22560297
NCBI chr 1:127,418,079...127,605,758
Ensembl chr 1:127,414,283...127,607,285
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Tram2
translocating chain-associating membrane protein 2
IEA
MGI
NCBI chr 1:21,071,621...21,149,449
Ensembl chr 1:21,066,523...21,149,453
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Vps25
vacuolar protein sorting 25
IAGP
MGI
PMID:25373905
NCBI chr11:101,144,533...101,150,377
Ensembl chr11:101,144,533...101,150,375
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Tbx15
T-box 15
IAGP
MGI
PMID:15652702
NCBI chr 3:99,147,671...99,261,576
Ensembl chr 3:99,147,697...99,261,575
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Chd7
chromodomain helicase DNA binding protein 7
IAGP
MGI
PMID:24840056
NCBI chr 4:8,690,345...8,868,449
Ensembl chr 4:8,690,406...8,867,659
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Gsc
goosecoid homeobox
IAGP
MGI
PMID:9533949
NCBI chr12:104,437,468...104,439,495
Ensembl chr12:104,437,468...104,439,589
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Gsc
goosecoid homeobox
IAGP
MGI
PMID:9533949
NCBI chr12:104,437,468...104,439,495
Ensembl chr12:104,437,468...104,439,589
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Alx1
ALX homeobox 1
IAGP
MGI
PMID:15728667
NCBI chr10:102,834,564...102,865,501
Ensembl chr10:102,834,568...102,866,076
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Alx4
aristaless-like homeobox 4
IAGP
MGI
PMID:15728667
NCBI chr 2:93,472,779...93,511,686
Ensembl chr 2:93,472,729...93,511,684
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Nabp2
nucleic acid binding protein 2
IAGP
MGI
PMID:22940690
NCBI chr10:128,237,263...128,247,426
Ensembl chr10:128,237,264...128,247,361
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Pax1
paired box 1
IAGP
MGI
PMID:16093716
NCBI chr 2:147,203,850...147,216,972
Ensembl chr 2:147,203,845...147,235,215
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Prrx1
paired related homeobox 1
IAGP
MGI
PMID:9729491
NCBI chr 1:163,072,688...163,142,714
Ensembl chr 1:163,072,688...163,141,279
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Prrx2
paired related homeobox 2
IAGP
MGI
PMID:9729491
NCBI chr 2:30,735,076...30,771,263
Ensembl chr 2:30,724,984...30,771,263
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Rbl1
RB transcriptional corepressor like 1
IAGP
MGI
PMID:24710275
NCBI chr 2:156,987,813...157,046,454
Ensembl chr 2:156,987,813...157,046,454
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Rbl2
RB transcriptional corepressor like 2
IAGP
MGI
PMID:24710275
NCBI chr 8:91,796,685...91,850,472
Ensembl chr 8:91,796,685...91,850,472
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Sox9
SRY (sex determining region Y)-box 9
IAGP
MGI
PMID:11371614
NCBI chr11:112,673,036...112,678,583
Ensembl chr11:112,673,050...112,678,586
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Tbx15
T-box 15
IAGP
MGI
PMID:15652702 PMID:15728667
NCBI chr 3:99,147,671...99,261,576
Ensembl chr 3:99,147,697...99,261,575
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Fgfr2
fibroblast growth factor receptor 2
IAGP
MGI
PMID:10631169
NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079
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Pax1
paired box 1
IAGP
MGI
PMID:9671740 PMID:16093716 PMID:24538930
NCBI chr 2:147,203,850...147,216,972
Ensembl chr 2:147,203,845...147,235,215
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Runx2
runt related transcription factor 2
IAGP
MGI
PMID:21597273
NCBI chr17:44,806,873...45,125,518
Ensembl chr17:44,806,874...45,125,684
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Tbx5
T-box 5
IAGP
MGI
PMID:12736217
NCBI chr 5:119,934,581...120,023,285
Ensembl chr 5:119,970,733...120,023,284
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Bmi1
Bmi1 polycomb ring finger oncogene
IAGP
MGI
PMID:11290297
NCBI chr 2:18,681,953...18,691,440
Ensembl chr 2:18,681,829...18,691,440
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Pcgf2
polycomb group ring finger 2
IAGP
MGI
PMID:11290297
NCBI chr11:97,579,647...97,593,260
Ensembl chr11:97,579,649...97,591,323
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Pdgfra
platelet derived growth factor receptor, alpha polypeptide
IAGP
MGI
PMID:9226440
NCBI chr 5:75,311,988...75,358,867
Ensembl chr 5:75,312,953...75,358,876
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Alx1
ALX homeobox 1
IAGP
MGI
PMID:15728667
NCBI chr10:102,834,564...102,865,501
Ensembl chr10:102,834,568...102,866,076
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Bmi1
Bmi1 polycomb ring finger oncogene
IAGP
MGI
PMID:11290297
NCBI chr 2:18,681,953...18,691,440
Ensembl chr 2:18,681,829...18,691,440
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Bmper
BMP-binding endothelial regulator
IAGP
MGI
PMID:17035289
NCBI chr 9:23,134,372...23,396,511
Ensembl chr 9:23,134,372...23,396,496
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Gli3
GLI-Kruppel family member GLI3
IAGP
MGI
PMID:15728667
NCBI chr13:15,638,308...15,904,611
Ensembl chr13:15,637,820...15,904,611
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Mtf2
metal response element binding transcription factor 2
IAGP
MGI
PMID:21059868
NCBI chr 5:108,213,518...108,257,085
Ensembl chr 5:108,213,540...108,256,870
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Pcgf2
polycomb group ring finger 2
IAGP
MGI
PMID:11290297 PMID:21059868
NCBI chr11:97,579,647...97,593,260
Ensembl chr11:97,579,649...97,591,323
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Phc1
polyhomeotic 1
IAGP
MGI
PMID:16024804
NCBI chr 6:122,294,690...122,317,551
Ensembl chr 6:122,294,690...122,317,520
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Phc2
polyhomeotic 2
IAGP
MGI
PMID:16024804
NCBI chr 4:128,548,448...128,646,674
Ensembl chr 4:128,548,495...128,646,674
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Ptch1
patched 1
IAGP
MGI
PMID:23897749
NCBI chr13:63,656,142...63,721,274
Ensembl chr13:63,656,142...63,721,412
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Tbx15
T-box 15
IAGP
MGI
PMID:15652702 PMID:15728667
NCBI chr 3:99,147,671...99,261,576
Ensembl chr 3:99,147,697...99,261,575
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Vps25
vacuolar protein sorting 25
IAGP
MGI
PMID:25373905
NCBI chr11:101,144,533...101,150,377
Ensembl chr11:101,144,533...101,150,375
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Wnt7a
wingless-type MMTV integration site family, member 7A
IEA
MGI
NCBI chr 6:91,340,963...91,388,335
Ensembl chr 6:91,340,963...91,388,345
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Apc
APC, WNT signaling pathway regulator
IAGP
MGI
PMID:19356224
NCBI chr18:34,353,350...34,455,243
Ensembl chr18:34,353,977...34,455,605
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Pbx1
pre B cell leukemia homeobox 1
IAGP
MGI
PMID:22560297
NCBI chr 1:167,946,933...168,259,898
Ensembl chr 1:167,946,933...168,259,839
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Sox9
SRY (sex determining region Y)-box 9
IAGP
MGI
PMID:11857796 PMID:12414734 PMID:21484342 PMID:23907671
NCBI chr11:112,673,036...112,678,583
Ensembl chr11:112,673,050...112,678,586
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Tmem163
transmembrane protein 163
IAGP
MGI
PMID:22560297
NCBI chr 1:127,418,079...127,605,758
Ensembl chr 1:127,414,283...127,607,285
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2700049A03Rik
RIKEN cDNA 2700049A03 gene
IAGP
MGI
PMID:21750036
NCBI chr12:71,183,627...71,356,273
Ensembl chr12:71,183,622...71,290,077
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Bpnt2
3'(2'), 5'-bisphosphate nucleotidase 2
IAGP
MGI
PMID:18695242 PMID:23479625
NCBI chr 4:4,762,484...4,793,306
Ensembl chr 4:4,762,484...4,793,355
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Fermt2
fermitin family member 2
IAGP
MGI
PMID:26151572
NCBI chr14:45,696,252...45,767,767
Ensembl chr14:45,696,252...45,767,575
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Gli3
GLI-Kruppel family member GLI3
IAGP
MGI
PMID:23644062
NCBI chr13:15,638,308...15,904,611
Ensembl chr13:15,637,820...15,904,611
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Hapln1
hyaluronan and proteoglycan link protein 1
IAGP
MGI
PMID:9988279
NCBI chr13:89,688,654...89,759,951
Ensembl chr13:89,687,915...89,759,771
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Ihh
Indian hedgehog
IAGP
MGI
PMID:11748145
NCBI chr 1:74,984,474...74,990,831
Ensembl chr 1:74,984,474...74,990,831
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Nabp2
nucleic acid binding protein 2
IAGP
MGI
PMID:23408915
NCBI chr10:128,237,263...128,247,426
Ensembl chr10:128,237,264...128,247,361
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Npr2
natriuretic peptide receptor 2
IAGP
MGI
PMID:5713631
NCBI chr 4:43,629,015...43,651,437
Ensembl chr 4:43,631,935...43,651,244
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Papss2
3'-phosphoadenosine 5'-phosphosulfate synthase 2
IAGP
MGI
PMID:23479625
NCBI chr19:32,573,072...32,644,587
Ensembl chr19:32,573,190...32,644,587
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Pds5b
PDS5 cohesin associated factor B
IAGP
MGI
PMID:17652350
NCBI chr 5:150,597,178...150,734,174
Ensembl chr 5:150,597,204...150,734,155
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Smo
smoothened, frizzled class receptor
IAGP
MGI
PMID:11748145
NCBI chr 6:29,735,480...29,761,359
Ensembl chr 6:29,735,502...29,761,364
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Zeb1
zinc finger E-box binding homeobox 1
IAGP
MGI
PMID:9389660
NCBI chr18:5,591,330...5,775,468
Ensembl chr18:5,591,860...5,775,467
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Alx1
ALX homeobox 1
IAGP
MGI
PMID:15728667
NCBI chr10:102,834,564...102,865,501
Ensembl chr10:102,834,568...102,866,076
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Alx4
aristaless-like homeobox 4
IAGP
MGI
PMID:15728667
NCBI chr 2:93,472,779...93,511,686
Ensembl chr 2:93,472,729...93,511,684
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Gli3
GLI-Kruppel family member GLI3
IAGP
MGI
PMID:15728667
NCBI chr13:15,638,308...15,904,611
Ensembl chr13:15,637,820...15,904,611
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Pax1
paired box 1
IAGP
MGI
PMID:10656775 PMID:24538930
NCBI chr 2:147,203,850...147,216,972
Ensembl chr 2:147,203,845...147,235,215
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Tbx15
T-box 15
IAGP
MGI
PMID:13654621 PMID:15652702 PMID:15728667
NCBI chr 3:99,147,671...99,261,576
Ensembl chr 3:99,147,697...99,261,575
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Alx1
ALX homeobox 1
IAGP
MGI
PMID:15728667
NCBI chr10:102,834,564...102,865,501
Ensembl chr10:102,834,568...102,866,076
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Alx4
aristaless-like homeobox 4
IAGP
MGI
PMID:15728667
NCBI chr 2:93,472,779...93,511,686
Ensembl chr 2:93,472,729...93,511,684
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Bmper
BMP-binding endothelial regulator
IAGP
MGI
PMID:17035289
NCBI chr 9:23,134,372...23,396,511
Ensembl chr 9:23,134,372...23,396,496
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Cacna1s
calcium channel, voltage-dependent, L type, alpha 1S subunit
IAGP
MGI
PMID:14300095
NCBI chr 1:135,980,549...136,047,268
Ensembl chr 1:135,980,488...136,047,560
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Chst11
carbohydrate sulfotransferase 11
IAGP
MGI
PMID:16079159
NCBI chr10:82,820,274...83,031,738
Ensembl chr10:82,821,332...83,031,734
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Fgfr2
fibroblast growth factor receptor 2
IAGP
MGI
PMID:10631169
NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079
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Gli3
GLI-Kruppel family member GLI3
IAGP
MGI
PMID:15728667
NCBI chr13:15,638,308...15,904,611
Ensembl chr13:15,637,820...15,904,611
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Lmx1b
LIM homeobox transcription factor 1 beta
IAGP
MGI
PMID:9590288
NCBI chr 2:33,450,977...33,531,219
Ensembl chr 2:33,450,977...33,530,620
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Msx1
msh homeobox 1
IAGP
MGI
PMID:15930102
NCBI chr 5:37,977,835...37,981,929
Ensembl chr 5:37,977,829...37,981,927
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Msx2
msh homeobox 2
IAGP
MGI
PMID:15930102
NCBI chr13:53,620,917...53,626,816
Ensembl chr13:53,620,920...53,627,110
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Postn
periostin, osteoblast specific factor
IAGP
MGI
PMID:16314533
NCBI chr 3:54,266,688...54,298,462
Ensembl chr 3:54,268,530...54,298,458
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Sox9
SRY (sex determining region Y)-box 9
IAGP
MGI
PMID:11371614
NCBI chr11:112,673,036...112,678,583
Ensembl chr11:112,673,050...112,678,586
G
Tbx15
T-box 15
IAGP
MGI
PMID:13654621 PMID:15652702 PMID:15728667
NCBI chr 3:99,147,671...99,261,576
Ensembl chr 3:99,147,697...99,261,575
G
Tent5a
terminal nucleotidyltransferase 5A
IAGP
MGI
PMID:26803617
NCBI chr 9:85,202,492...85,209,203
Ensembl chr 9:85,202,492...85,209,401
G
Tnni2
troponin I, skeletal, fast 2
IAGP
MGI
PMID:25340332
NCBI chr 7:141,995,553...141,998,147
Ensembl chr 7:141,995,545...141,998,147
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all