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MEASUREMENT METHODS - ANNOTATIONS

The Clinical Measurement Ontology (CMO), Measurement Methods Ontology (MMO), and Experimental Condition Ontology (XCO) are currently being developed at the Rat Genome Database. For more information about these vocabularies please see Shimoyama et al. Three ontologies to define phenotype measurement data. Front Genet. 2012;3:87. Epub 2012 May 28 or contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:transcript expression assay
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Accession:MMO:0000641 term browser browse the term
Definition:Any method which measures the levels, timing, and/or location, or differential quantification of specific gene transcripts, that is, RNA molecules formed from DNA templates during transcription.
Synonyms:related_synonym: RNA expression assay;   transcription profiling assay
 xref: OBI:0000424
 display_synonym: transcript expression


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real-time polymerase chain reaction assay term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Neuinf10 Neuroinflammation QTL 10 IDA RGD PMID:19525015 RGD:2311085 NCBI chr11:31,239,134...78,851,519 JBrowse link
Q Neuinf11 Neuroinflammation QTL 11 IDA RGD PMID:19525015 RGD:2311085 NCBI chr 3:15,005,422...76,927,699 JBrowse link
Q Neuinf12 Neuroinflammation QTL 12 IDA RGD PMID:19525015 RGD:2311085 NCBI chr15:1...55,302,115 JBrowse link
Q Neuinf8 Neuroinflammation QTL 8 IDA RGD PMID:19525015 RGD:2311085 NCBI chr 1:57,336,763...151,090,257 JBrowse link
Q Neuinf9 Neuroinflammation QTL 9 IDA RGD PMID:19525015 RGD:2311085 NCBI chr10:5,801,990...62,146,030 JBrowse link
Term paths to the root
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Term Annotations click to browse term
  measurement method 2368
    molecular method 34
      expression assay 12
        transcript expression assay 5
          Northern blot assay 0
          RNA-seq assay + 0
          cDNA clone-based transcript expression assay 0
          high throughput transcription profiling by array + 0
          nuclease protection assay + 0
          nucleic acid dot/slot blot assay 0
          polymerase chain reaction assay + 5
          primer extension assay 0
          ribonucleic acid in situ hybridization assay 0
          serial analysis of gene expression assay 0
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