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MEASUREMENT METHODS - ANNOTATIONS

The Clinical Measurement Ontology (CMO), Measurement Methods Ontology (MMO), and Experimental Condition Ontology (XCO) are currently being developed at the Rat Genome Database. For more information about these vocabularies please see Shimoyama et al. Three ontologies to define phenotype measurement data. Front Genet. 2012;3:87. Epub 2012 May 28 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:ex vivo light microscopy with histochemistry and digital image analysis
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Accession:MMO:0000560 term browser browse the term
Definition:A method performed outside the living body, for instance, on isolated cells or tissues, which incorporates the use of light microscopy and histochemistry to produce picture files stored as data expressed in a discrete numerical form, followed by use of computer software to evaluate these resulting microscopic images.


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ex vivo light microscopy with immunohistochemistry and digital image analysis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Gcr3 Gastric cancer resistance QTL 3 IDA RGD PMID:10706129 RGD:69698 NCBI chr16:19,398,187...70,590,230 JBrowse link
Q Lnnr1 Liver neoplastic nodule remodeling QTL 1 IDA RGD PMID:12672032 RGD:629574 NCBI chr 7:40,872,682...85,872,682 JBrowse link
Q Lnnr2 Liver neoplastic nodule remodeling QTL 2 IDA RGD PMID:12672032 RGD:629574 NCBI chr 1:255,728,828...282,763,074 JBrowse link
Q Neuinf4 Neuroinflammation QTL 4 IDA RGD PMID:19525015 RGD:2311085 NCBI chr 1:1...28,468,970 JBrowse link
Q Neuinf5 Neuroinflammation QTL 5 IDA RGD PMID:19525015 RGD:2311085 NCBI chr 7:12,328,467...67,193,263 JBrowse link
Q Neuinf6 Neuroinflammation QTL 6 IDA RGD PMID:19525015 RGD:2311085 NCBI chr 7:1...34,147,172 JBrowse link
Q Neuinf7 Neuroinflammation QTL 7 IDA RGD PMID:19525015 RGD:2311085 NCBI chr10:75,544,754...112,626,471 JBrowse link

Related Phenotype Data for Term "ex vivo light microscopy with histochemistry and digital image analysis" (MMO:0000560)

Rat Strains:
Clinical Measurements:
Experimental Conditions:
Measurement Methods:

Term paths to the root
Path 1
Term Annotations click to browse term
  measurement method 2368
    ex vivo method 1236
      ex vivo microscopy 132
        ex vivo light microscopy 127
          ex vivo light microscopy with digital image analysis 56
            ex vivo light microscopy with histochemistry and digital image analysis 7
              ex vivo light microscopy with immunohistochemistry and digital image analysis 7
Path 2
Term Annotations click to browse term
  measurement method 2368
    ex vivo method 1236
      ex vivo microscopy 132
        histology 8
          histochemistry 8
            ex vivo light microscopy with histochemistry 8
              ex vivo light microscopy with histochemistry and digital image analysis 7
                ex vivo light microscopy with immunohistochemistry and digital image analysis 7
paths to the root