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MEASUREMENT METHODS - ANNOTATIONS

The Clinical Measurement Ontology (CMO), Measurement Methods Ontology (MMO), and Experimental Condition Ontology (XCO) are currently being developed at the Rat Genome Database. For more information about these vocabularies please see Shimoyama et al. Three ontologies to define phenotype measurement data. Front Genet. 2012;3:87. Epub 2012 May 28 or contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:ex vivo light microscopy with immunohistochemistry and digital image analysis
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Accession:MMO:0000422 term browser browse the term
Definition:A method performed outside the living body, e.g., on isolated tissue, which incorporates use of light microscopy and immunohistochemistry to produce picture files stored as data expressed in a discrete numerical form, followed by use of computer software to evaluate these resulting microscopic images. Light microscopy is the examination or observation of material through a light microscope, an optical instrument that uses visible light (electromagnetic radiation with wavelengths between approximately 390 and 700 nm) processed through a lens or a combination of lenses to produce magnified images. Immunohistochemistry is the microscopic localization of specific antigens in tissues by staining with antibodies labeled with fluorescent or pigmented material.


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ex vivo light microscopy with immunohistochemistry and digital image analysis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Gcr3 Gastric cancer resistance QTL 3 IDA RGD PMID:10706129 RGD:69698 NCBI chr16:17,696,791...82,635,055 JBrowse link
Q Lnnr1 Liver neoplastic nodule remodeling QTL 1 IDA RGD PMID:12672032 RGD:629574 NCBI chr 7:34,293,282...79,293,282 JBrowse link
Q Lnnr2 Liver neoplastic nodule remodeling QTL 2 IDA RGD PMID:12672032 RGD:629574 NCBI chr 1:233,948,574...260,522,016 JBrowse link
Q Neuinf4 Neuroinflammation QTL 4 IDA RGD PMID:19525015 RGD:2311085 NCBI chr 1:1...28,736,750 JBrowse link
Q Neuinf5 Neuroinflammation QTL 5 IDA RGD PMID:19525015 RGD:2311085 NCBI chr 7:9,462,246...58,265,113 JBrowse link
Q Neuinf6 Neuroinflammation QTL 6 IDA RGD PMID:19525015 RGD:2311085 NCBI chr 7:1...27,829,089 JBrowse link
Q Neuinf7 Neuroinflammation QTL 7 IDA RGD PMID:19525015 RGD:2311085 NCBI chr10:72,224,939...107,211,142 JBrowse link

Related Phenotype Data for Term "ex vivo light microscopy with immunohistochemistry and digital image analysis" (MMO:0000422)

Rat Strains:
Clinical Measurements:
Experimental Conditions:
Measurement Methods:
Term paths to the root
Path 1
Term Annotations click to browse term
  measurement method 2368
    ex vivo method 1236
      ex vivo microscopy 132
        ex vivo light microscopy 127
          ex vivo light microscopy with immunohistochemistry 7
            ex vivo light microscopy with immunohistochemistry and digital image analysis 7
Path 2
Term Annotations click to browse term
  measurement method 2368
    ex vivo method 1236
      ex vivo microscopy 132
        histology 8
          histochemistry 8
            immunohistochemistry 7
              ex vivo light microscopy with immunohistochemistry 7
                ex vivo light microscopy with immunohistochemistry and digital image analysis 7
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