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MEASUREMENT METHODS - ANNOTATIONS

The Clinical Measurement Ontology (CMO), Measurement Methods Ontology (MMO), and Experimental Condition Ontology (XCO) are currently being developed at the Rat Genome Database. For more information about these vocabularies please see Shimoyama et al. Three ontologies to define phenotype measurement data. Front Genet. 2012;3:87. Epub 2012 May 28 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:movement/behavior test enclosure method
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Accession:MMO:0000256 term browser browse the term
Definition:A test utilizing an experimental instrument composed of a demarcated area used to measure and/or record movement or behavior of an organism.


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active avoidance test using a two-way shuttle box apparatus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Anxrr21 Anxiety related response QTL 21 IDA RGD PMID:18971309 RGD:2313899 NCBI chr 5:66,174,080...124,160,948 JBrowse link
center of open field apparatus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Anxrr16 Anxiety related response QTL 16 IDA RGD PMID:10523818 RGD:631324 NCBI chr 4:93,308,457...167,139,447 JBrowse link
Q Anxrr17 Anxiety related response QTL 17 IDA RGD PMID:10523818 RGD:631324 NCBI chr 7:924,703...115,097,879 JBrowse link
Q Anxrr29 Anxiety related response QTL 29 IDA RGD PMID:21516450 RGD:6218999
Q Anxrr39 Anxiety related response QTL 39 IDA RGD PMID:21516450 RGD:6218999
Q Anxrr47 Anxiety related response QTL 47 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:10,084,089...55,084,089 JBrowse link
corner of open field apparatus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Anxrr42 Anxiety related response QTL 42 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:144,639,524...182,687,754 JBrowse link
defensive burying test term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Anxrr18 Anxiety related response QTL 18 IDA RGD PMID:16490266 RGD:1578499 NCBI chr 2:200,990,457...245,990,457 JBrowse link
fear conditioning test term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Anxrr55 Anxiety related response QTL 55 IDA RGD PMID:27044679 RGD:11566049 NCBI chr 4:32,583,980...114,627,242 JBrowse link
novel cage apparatus test utilizing automatic movement detection system term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Activ1 Activity QTL 1 IDA RGD PMID:12660808 RGD:631228 NCBI chr 8:102,370,617...108,923,645 JBrowse link
Q Activ2 Activity QTL 2 IDA RGD PMID:12660808 RGD:631228 NCBI chr 8:41,866,876...86,866,876 JBrowse link
Q Anxrr32 Anxiety related response QTL 32 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:144,639,524...182,687,754 JBrowse link
Q Anxrr33 Anxiety related response QTL 33 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:144,639,524...182,687,754 JBrowse link
Q Anxrr34 Anxiety related response QTL 34 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:144,639,524...182,687,754 JBrowse link
Q Anxrr35 Anxiety related response QTL 35 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:10,084,089...55,084,089 JBrowse link
Q Anxrr36 Anxiety related response QTL 36 IDA RGD PMID:21516450 RGD:6218999
Q Anxrr37 Anxiety related response QTL 37 IDA RGD PMID:21516450 RGD:6218999
Q Anxrr38 Anxiety related response QTL 38 IDA RGD PMID:21516450 RGD:6218999
Q Anxrr43 Anxiety related response QTL 43 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:144,639,524...182,687,754 JBrowse link
Q Anxrr44 Anxiety related response QTL 44 IDA RGD PMID:21516450 RGD:6218999
Q Anxrr45 Anxiety related response QTL 45 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:110,870,972...155,870,972 JBrowse link
Q Anxrr46 Anxiety related response QTL 46 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:110,870,972...155,870,972 JBrowse link
Q Anxrr48 Anxiety related response QTL 48 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:10,084,089...55,084,089 JBrowse link
Q Anxrr52 Anxiety related response QTL 52 IDA RGD PMID:21516450 RGD:6218999
Q Anxrr53 Anxiety related response QTL 53 IDA RGD PMID:21516450 RGD:6218999
open field apparatus method term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Activ5 Activity QTL 5 IDA RGD PMID:19089625 RGD:2306974 NCBI chr16:42,396,345...84,729,064 JBrowse link
Q Anxrr13 Anxiety related response QTL 13 IDA RGD PMID:12972953 RGD:731213 NCBI chr 1:83,547,917...128,547,917 JBrowse link
Q Anxrr19 Anxiety related response QTL 19 IDA RGD PMID:16490266 RGD:1578499 NCBI chr10:18,167,841...63,167,841 JBrowse link
Q Anxrr20 Anxiety related response QTL 20 IDA RGD PMID:16490266 RGD:1578499 NCBI chr18:41,432,971...83,828,827 JBrowse link
Q Anxrr30 Anxiety related response QTL 30 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:62,753,847...107,753,847 JBrowse link
Q Anxrr40 Anxiety related response QTL 40 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:62,753,847...107,753,847 JBrowse link
Q Anxrr49 Anxiety related response QTL 49 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:62,753,847...107,753,847 JBrowse link
Q Anxrr51 Anxiety related response QTL 51 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:124,778,595...169,778,595 JBrowse link
periphery of open field apparatus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Activ3 Activity QTL 3 IDA RGD PMID:19089625 RGD:2306974 NCBI chr 2:168,594,495...213,594,495 JBrowse link
Q Activ4 Activity QTL 4 IDA RGD PMID:19089625 RGD:2306974 NCBI chr16:1...33,418,960 JBrowse link
Q Anxrr31 Anxiety related response QTL 31 IDA RGD PMID:21516450 RGD:6218999
Q Anxrr41 Anxiety related response QTL 41 IDA RGD PMID:21516450 RGD:6218999
Q Anxrr50 Anxiety related response QTL 50 IDA RGD PMID:21516450 RGD:6218999
Q Anxrr58 Anxiety related response QTL 58 IDA RGD PMID:27044679 RGD:11566049 NCBI chr 4:119,463,257...147,278,687 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  measurement method 2368
    in vivo method 1105
      body movement/behavior method 104
        movement/behavior test apparatus method 90
          movement/behavior test enclosure method 39
            SHIRPA test + 0
            activity monitoring apparatus method 0
            conditioned placed preference test 0
            defensive burying test 1
            fear conditioning test + 1
            forced swim test + 0
            go/no-go task 0
            hole-board test 0
            home cage monitoring method 0
            light-dark box test 0
            novel cage apparatus method + 16
            observational fear learning apparatus method 0
            open field apparatus method + 20
            operant conditioning chamber method + 0
            parallel rod floor apparatus method 0
            puzzle box apparatus method 0
            three-chamber assay + 0
            two way shuttlebox apparatus method + 1
            visual cliff apparatus method 0
            visual water box method 0
paths to the root