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MEASUREMENT METHODS - ANNOTATIONS

The Clinical Measurement Ontology (CMO), Measurement Methods Ontology (MMO), and Experimental Condition Ontology (XCO) are currently being developed at the Rat Genome Database. For more information about these vocabularies please see Shimoyama et al. Three ontologies to define phenotype measurement data. Front Genet. 2012;3:87. Epub 2012 May 28 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:movement/behavior test apparatus method
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Accession:MMO:0000255 term browser browse the term
Definition:A method utilizing a piece of physical instrumentation, machinery or equipment designed and used to measure the movements and/or behaviors of an organism.


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active avoidance test using a two-way shuttle box apparatus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Anxrr21 Anxiety related response QTL 21 IDA RGD PMID:18971309 RGD:2313899 NCBI chr 5:65,696,672...129,038,896 JBrowse link
arm(s) of elevated plus maze apparatus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Anxrr4 Anxiety related response QTL 4 IDA RGD PMID:14739700 RGD:737695 NCBI chr 5:136,354,114...173,707,219 JBrowse link
Q Anxrr7 Anxiety related response QTL 7 IDA RGD PMID:14739700 RGD:737695 NCBI chr 2:123,456,539...168,456,539 JBrowse link
Q Anxrr8 Anxiety related response QTL 8 IDA RGD PMID:14739700 RGD:737695 NCBI chr 7:54,259,512...99,259,512 JBrowse link
Q Anxrr9 Anxiety related response QTL 9 IDA RGD PMID:14739700 RGD:737695 NCBI chr 8:102,051,964...133,307,652 JBrowse link
center of elevated plus maze apparatus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Anxrr12 Anxiety related response QTL 12 IDA RGD PMID:12972953 RGD:731213 NCBI chr 1:141,296,374...186,296,374 JBrowse link
Q Anxrr15 Anxiety related response QTL 15 IDA RGD PMID:12972953 RGD:731213 NCBI chr 8:104,682,575...133,307,652 JBrowse link
center of open field apparatus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Anxrr16 Anxiety related response QTL 16 IDA RGD PMID:10523818 RGD:631324 NCBI chr 4:94,893,247...168,046,938 JBrowse link
Q Anxrr17 Anxiety related response QTL 17 IDA RGD PMID:10523818 RGD:631324 NCBI chr 7:2,920,071...124,838,025 JBrowse link
Q Anxrr29 Anxiety related response QTL 29 IDA RGD PMID:21516450 RGD:6218999
Q Anxrr39 Anxiety related response QTL 39 IDA RGD PMID:21516450 RGD:6218999
Q Anxrr47 Anxiety related response QTL 47 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:8,052,189...53,052,189 JBrowse link
corner of open field apparatus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Anxrr42 Anxiety related response QTL 42 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:145,547,014...184,226,339 JBrowse link
defensive burying test term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Anxrr18 Anxiety related response QTL 18 IDA RGD PMID:16490266 RGD:1578499 NCBI chr 2:217,743,855...262,743,855 JBrowse link
elevated plus maze apparatus method term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Anxrr54 Anxiety related response QTL 54 IDA RGD PMID:27044679 RGD:11566049 NCBI chr 4:112,807,675...157,807,675 JBrowse link
enclosed arm of elevated plus maze apparatus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Anxrr10 Anxiety related response QTL 10 IDA RGD PMID:14739700 RGD:737695 NCBI chr 3:40,422,921...85,422,921 JBrowse link
Q Anxrr11 Anxiety related response QTL 11 IDA RGD PMID:14739700 RGD:737695 NCBI chr18:31,608,424...76,608,424 JBrowse link
fear conditioning test term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Anxrr55 Anxiety related response QTL 55 IDA RGD PMID:27044679 RGD:11566049 NCBI chr 4:29,549,895...112,807,890 JBrowse link
Morris water maze method term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Despr1 Despair related QTL 1 IDA RGD PMID:15457344 RGD:1302894
Q Despr10 Despair related QTL 10 IDA RGD PMID:15457344 RGD:1302894 NCBI chr 2:119,789,823...164,789,823 JBrowse link
Q Despr11 Despair related QTL 11 IDA RGD PMID:15457344 RGD:1302894 NCBI chr 3:29,908,255...74,908,255 JBrowse link
Q Despr12 Despair related QTL 12 IDA RGD PMID:15457344 RGD:1302894 NCBI chr 6:1...35,623,029 JBrowse link
Q Despr13 Despair related QTL 13 IDA RGD PMID:15457344 RGD:1302894 NCBI chr15:1...30,597,196 JBrowse link
Q Despr14 Despair related QTL 14 IDA RGD PMID:15457344 RGD:1302894 NCBI chr 8:10,388,439...55,388,439 JBrowse link
Q Despr15 Despair related QTL 15 IDA RGD PMID:15457344 RGD:1302894 NCBI chr20:1...24,652,101 JBrowse link
Q Despr2 Despair related QTL 2 IDA RGD PMID:15457344 RGD:1302894 NCBI chr 3:102,466,149...147,466,149 JBrowse link
Q Despr3 Despair related QTL3 IDA RGD PMID:15457344 RGD:1302894
Q Despr4 Despair related QTL 4 IDA RGD PMID:15457344 RGD:1302894 NCBI chr 8:10,388,439...55,388,439 JBrowse link
Q Despr5 Despair related QTL 5 IDA RGD PMID:15457344 RGD:1302894 NCBI chr 9:4,986,095...49,986,095 JBrowse link
Q Despr6 Despair related QTL 6 IDA RGD PMID:15457344 RGD:1302894 NCBI chr16:1...41,240,937 JBrowse link
Q Despr7 Despair related QTL 7 IDA RGD PMID:15457344 RGD:1302894 NCBI chr16:1,728,297...46,728,297 JBrowse link
Q Despr8 Despair related QTL 8 IDA RGD PMID:15457344 RGD:1302894 NCBI chr 1:1...24,368,159 JBrowse link
Q Despr9 Despair related QTL 9 IDA RGD PMID:15457344 RGD:1302894 NCBI chr 1:185,390,068...230,390,068 JBrowse link
Q Memor1 Memory QTL 1 IDA RGD PMID:14665699 RGD:1581736 NCBI chr  X:110,957,467...155,957,467 JBrowse link
Q Memor10 Memory QTL 10 IDA RGD PMID:16837653 RGD:1581615 NCBI chr 3:153,412,455...170,534,769 JBrowse link
Q Memor11 Memory QTL 11 IDA RGD PMID:16837653 RGD:1581615 NCBI chr 9:41,261,034...90,024,806 JBrowse link
Q Memor12 Memory QTL 12 IDA RGD PMID:16837653 RGD:1581615 NCBI chr20:4,108,956...49,108,956 JBrowse link
Q Memor18 Memory QTL 18 IDA RGD PMID:23469157 RGD:7394833 NCBI chr17:61,355,300...67,004,384 JBrowse link
Q Memor19 Memory QTL 19 IDA RGD PMID:23861781 RGD:7495755 NCBI chr 2:183,864,092...187,196,901 JBrowse link
Q Memor2 Memory QTL 2 IDA RGD PMID:14665699 RGD:1581736 NCBI chr  X:21,592,623...44,320,739 JBrowse link
Q Memor3 Memory QTL 3 IDA RGD PMID:16837653 RGD:1581615 NCBI chr 1:153,834,077...232,297,227 JBrowse link
Q Memor4 Memory QTL 4 IDA RGD PMID:16837653 RGD:1581615 NCBI chr 8:11,373,267...57,541,668 JBrowse link
Q Memor5 Memory QTL 5 IDA RGD PMID:16837653 RGD:1581615 NCBI chr17:42,541,872...85,446,768 JBrowse link
Q Memor6 Memory QTL 6 IDA RGD PMID:16837653 RGD:1581615 NCBI chr20:30,913,481...56,205,956 JBrowse link
Q Memor7 Memory QTL 7 IDA RGD PMID:16837653 RGD:1581615 NCBI chr11:21,944,229...66,944,229 JBrowse link
Q Memor8 Memory QTL 8 IDA RGD PMID:16837653 RGD:1581615 NCBI chr 2:157,914,311...204,022,555 JBrowse link
Q Memor9 Memory QTL 9 IDA RGD PMID:16837653 RGD:1581615 NCBI chr 2:214,870,793...251,212,353 JBrowse link
novel cage apparatus test utilizing automatic movement detection system term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Activ1 Activity QTL 1 IDA RGD PMID:12660808 RGD:631228 NCBI chr 8:110,212,979...116,947,981 JBrowse link
Q Activ2 Activity QTL 2 IDA RGD PMID:12660808 RGD:631228 NCBI chr 8:45,712,344...90,712,344 JBrowse link
Q Anxrr32 Anxiety related response QTL 32 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:145,547,014...184,226,339 JBrowse link
Q Anxrr33 Anxiety related response QTL 33 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:145,547,014...184,226,339 JBrowse link
Q Anxrr34 Anxiety related response QTL 34 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:145,547,014...184,226,339 JBrowse link
Q Anxrr35 Anxiety related response QTL 35 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:8,052,189...53,052,189 JBrowse link
Q Anxrr36 Anxiety related response QTL 36 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:155,386,197...184,226,339 JBrowse link
Q Anxrr37 Anxiety related response QTL 37 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:155,386,197...184,226,339 JBrowse link
Q Anxrr38 Anxiety related response QTL 38 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:155,386,197...184,226,339 JBrowse link
Q Anxrr43 Anxiety related response QTL 43 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:145,547,014...184,226,339 JBrowse link
Q Anxrr44 Anxiety related response QTL 44 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:155,386,197...184,226,339 JBrowse link
Q Anxrr45 Anxiety related response QTL 45 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:110,702,761...155,702,761 JBrowse link
Q Anxrr46 Anxiety related response QTL 46 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:110,702,761...155,702,761 JBrowse link
Q Anxrr48 Anxiety related response QTL 48 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:8,052,189...53,052,189 JBrowse link
Q Anxrr52 Anxiety related response QTL 52 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:155,386,197...184,226,339 JBrowse link
Q Anxrr53 Anxiety related response QTL 53 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:155,386,197...184,226,339 JBrowse link
open arm of elevated plus maze apparatus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Anxrr14 Anxiety related response QTL 14 IDA RGD PMID:12972953 RGD:731213 NCBI chr 1:141,296,374...186,296,374 JBrowse link
Q Anxrr3 Anxiety related response QTL 3 IDA RGD PMID:14739700 RGD:737695 NCBI chr 2:7,893,600...52,893,600 JBrowse link
Q Anxrr5 Anxiety related response QTL 5 IDA RGD PMID:14739700 RGD:737695 NCBI chr 6:88,507,712...133,507,712 JBrowse link
Q Anxrr56 Anxiety related response QTL 56 IDA RGD PMID:27044679 RGD:11566049 NCBI chr 4:86,312,589...147,702,403 JBrowse link
Q Anxrr57 Anxiety related response QTL 57 IDA RGD PMID:27044679 RGD:11566049 NCBI chr 4:146,086,918...168,047,091 JBrowse link
Q Anxrr6 Anxiety related response QTL 6 IDA RGD PMID:14739700 RGD:737695 NCBI chr 7:22,168,412...67,168,412 JBrowse link
open field apparatus method term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Activ5 Activity QTL 5 IDA RGD PMID:19089625 RGD:2306974 NCBI chr16:46,558,188...90,668,790 JBrowse link
Q Anxrr13 Anxiety related response QTL 13 IDA RGD PMID:12972953 RGD:731213 NCBI chr 1:91,093,646...136,093,646 JBrowse link
Q Anxrr19 Anxiety related response QTL 19 IDA RGD PMID:16490266 RGD:1578499 NCBI chr10:19,402,814...64,402,814 JBrowse link
Q Anxrr20 Anxiety related response QTL 20 IDA RGD PMID:16490266 RGD:1578499 NCBI chr18:46,319,476...88,201,929 JBrowse link
Q Anxrr30 Anxiety related response QTL 30 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:63,812,687...108,812,687 JBrowse link
Q Anxrr40 Anxiety related response QTL 40 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:63,812,687...108,812,687 JBrowse link
Q Anxrr49 Anxiety related response QTL 49 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:63,812,687...108,812,687 JBrowse link
Q Anxrr51 Anxiety related response QTL 51 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:123,587,009...168,587,009 JBrowse link
periphery of open field apparatus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Activ3 Activity QTL 3 IDA RGD PMID:19089625 RGD:2306974 NCBI chr 2:183,984,665...228,984,665 JBrowse link
Q Activ4 Activity QTL 4 IDA RGD PMID:19089625 RGD:2306974 NCBI chr16:1...34,465,490 JBrowse link
Q Anxrr31 Anxiety related response QTL 31 IDA RGD PMID:21516450 RGD:6218999
Q Anxrr41 Anxiety related response QTL 41 IDA RGD PMID:21516450 RGD:6218999
Q Anxrr50 Anxiety related response QTL 50 IDA RGD PMID:21516450 RGD:6218999
Q Anxrr58 Anxiety related response QTL 58 IDA RGD PMID:27044679 RGD:11566049 NCBI chr 4:120,318,422...146,087,100 JBrowse link
test apparatus method utilizing piezoelectric accelerometer term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Ppulsi1 Prepulse inhibition QTL 1 IDA RGD PMID:12426667 RGD:629579 NCBI chr 2:142,053,350...228,984,665 JBrowse link
Q Ppulsi2 Prepulse inhibition QTL 2 IDA RGD PMID:12426667 RGD:629579 NCBI chr18:53,861,252...77,151,443 JBrowse link
treadmill method term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Arunc4 Aerobic running capacity QTL 4 IDA RGD PMID:17179209 RGD:1598978 NCBI chr16:1,090,054...86,162,972 JBrowse link
Q Arunc5 Aerobic running capacity QTL 5 IDA RGD PMID:17179209 RGD:1598978 NCBI chr 3:78,700,444...123,700,444 JBrowse link
treadmill method with electric shock source and automated tracking term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Arunc1 Aerobic running capacity QTL 1 IDA RGD PMID:12079278 RGD:619535 NCBI chr16:35,307,110...63,909,364 JBrowse link
Q Arunc2 Aerobic running capacity QTL 2 IDA RGD PMID:12079278 RGD:619535 NCBI chr16:73,219,638...80,115,794 JBrowse link
Q Arunc3 Aerobic running capacity QTL 3 IDA RGD PMID:12079278 RGD:619535 NCBI chr 3:2,631,421...33,477,544 JBrowse link

Term paths to the root
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Term Annotations click to browse term
  measurement method 2368
    in vivo method 1105
      body movement/behavior method 104
        movement/behavior test apparatus method 90
          movement/behavior test enclosure method + 39
          movement/behavior test maze method + 44
          test apparatus method utilizing mechanical transducer + 2
          treadmill method + 5
paths to the root