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MEASUREMENT METHODS - ANNOTATIONS

The Clinical Measurement Ontology (CMO), Measurement Methods Ontology (MMO), and Experimental Condition Ontology (XCO) are currently being developed at the Rat Genome Database. For more information about these vocabularies please see Shimoyama et al. Three ontologies to define phenotype measurement data. Front Genet. 2012;3:87. Epub 2012 May 28 or contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:cell-based biologic assay
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Accession:MMO:0000239 term browser browse the term
Definition:Any method to determine one or more biologic factors, i.e., variables that influence the viability and/or functioning of living cells or tissues, in isolated cells.


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Fura-2 intracellular calcium assay term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Calcic1 Intracellular calcium level QTL 1 IDA RGD PMID:15882549 RGD:1547855 NCBI chr12:28,064,433...40,130,419 JBrowse link
Q Calcic2 Intracellular calcium level QTL 2 IDA RGD PMID:17261463 RGD:1599588 NCBI chr12:28,064,433...46,669,029 JBrowse link
radioactive glucose uptake assay with liquid scintillation counting term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Gluco11 Glucose level QTL 11 IDA RGD PMID:15752738 RGD:1357415 NCBI chr 4:85,379,421...167,139,601 JBrowse link
Q Gluco12 Glucose level QTL12 IDA RGD PMID:15752738 RGD:1357415 NCBI chr 4:5,218,392...29,593,287 JBrowse link
Q Gluco16 Glucose level QTL 16 IDA RGD PMID:9171835 RGD:61078 NCBI chr 4:1...30,372,989 JBrowse link
Q Gluco17 Glucose level QTL 17 IDA RGD PMID:9171835 RGD:61078
Q Gluco3 Glucose level QTL 3 IDA RGD PMID:9171835 RGD:61078
Q Gluco4 Glucose level QTL 4 IDA RGD PMID:9171835 RGD:61078 NCBI chr 4:1...33,250,345 JBrowse link
Q Gluco5 Glucose level QTL 5 IDA RGD PMID:9171835 RGD:61078 NCBI chr 4:1...33,250,345 JBrowse link
Term paths to the root
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  measurement method 2368
    ex vivo method 1236
      isolated cell method 14
        cell-based biologic assay 9
          cell-based electrophysiological assay + 0
          glucose uptake assay + 7
          intracellular calcium assay + 2
          lipolysis assay + 0
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