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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of autophagosome assembly
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Accession:GO:2000785 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of autophagosome assembly.
Synonyms:exact_synonym: regulation of autophagic vacuole assembly;   regulation of autophagosome biosynthesis;   regulation of autophagosome formation
 related_synonym: regulation of PAS formation;   regulation of autophagic vacuole formation


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regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADPRHL1 ADP-ribosylhydrolase like 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:78,662,293...78,677,945 JBrowse link
G C10H9orf72 chromosome 10 C9orf72 homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:38,389,366...38,415,903
Ensembl chr10:38,389,331...38,415,903
JBrowse link
G IFT20 intraflagellar transport 20 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:44,609,586...44,616,685
Ensembl chr12:44,609,586...44,616,669
JBrowse link
G IFT88 intraflagellar transport 88 involved_in ISO (MGI:5527012|PMID:24089209) UniProt PMID:24089209 MGI:5527012 NCBI chr11:943,444...1,025,617
Ensembl chr11:943,469...1,022,953
JBrowse link
G MTMR3 myotubularin related protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:46,874,977...47,022,581
Ensembl chr14:46,875,032...47,023,505
JBrowse link
G NPRL3 NPR3 like, GATOR1 complex subunit involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:41,478,465...41,540,719
Ensembl chr 3:41,479,193...41,545,023
JBrowse link
G PIKFYVE phosphoinositide kinase, FYVE-type zinc finger containing involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:111,372,148...111,468,720
Ensembl chr15:111,372,173...111,467,919
JBrowse link
G RNF5 ring finger protein 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5469257|PMID:23093945) Ensembl
MGI
PMID:23093945 GO_REF:0000107 MGI:5469257 NCBI chr 7:24,215,493...24,217,983
Ensembl chr 7:24,215,703...24,217,972
JBrowse link
G TBC1D12 TBC1 domain family member 12 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:105,806,384...105,919,986
Ensembl chr14:105,829,857...105,920,924
JBrowse link
G TBC1D14 TBC1 domain family member 14 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:3,833,314...3,918,783 JBrowse link
G UBQLN2 ubiquilin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:48,948,062...48,951,392
Ensembl chr  X:48,948,389...48,950,263
JBrowse link
negative regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BECN1 beclin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5888970|PMID:27994061) Ensembl
MGI
PMID:27994061 GO_REF:0000107 MGI:5888970 NCBI chr12:20,041,914...20,054,249
Ensembl chr12:20,041,956...20,054,373
JBrowse link
G CHMP4A charged multivesicular body protein 4A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:75,089,092...75,093,796
Ensembl chr 7:75,088,271...75,097,761
JBrowse link
G CHMP4B charged multivesicular body protein 4B involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:37,285,422...37,334,103
Ensembl chr17:37,285,441...37,334,101
JBrowse link
G EHMT2 euchromatic histone lysine methyltransferase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5543871|PMID:23918802) Ensembl
MGI
PMID:23918802 GO_REF:0000107 MGI:5543871 NCBI chr 7:23,977,683...23,992,673
Ensembl chr 7:23,977,683...23,993,478
JBrowse link
G FEZ1 fasciculation and elongation protein zeta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:52,621,175...52,672,660
Ensembl chr 9:52,621,178...52,672,660
JBrowse link
G FEZ2 fasciculation and elongation protein zeta 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:103,566,214...103,612,855
Ensembl chr 3:103,566,221...103,615,775
JBrowse link
G LOC100157002 vesicle-trafficking protein SEC22b involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:100,880,843...100,900,942
Ensembl chr 4:100,880,914...100,906,062
JBrowse link
G LRRK2 leucine rich repeat kinase 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:71,800,337...71,945,828
Ensembl chr 5:71,800,240...71,944,938
JBrowse link
G MTM1 myotubularin 1 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:5510937|PMID:23695157)
GO_Central
MGI
PMID:21873635 PMID:23695157 MGI:5510937 NCBI chr  X:122,286,904...122,379,302
Ensembl chr  X:122,286,916...122,379,299
JBrowse link
G NUPR1 nuclear protein 1, transcriptional regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:18,402,781...18,404,411
Ensembl chr 3:18,402,935...18,511,087
JBrowse link
G PHF23 PHD finger protein 23 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:52,590,801...52,595,208
Ensembl chr12:52,590,801...52,598,175
JBrowse link
G PINK1 PTEN induced kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:78,863,195...78,884,663
Ensembl chr 6:78,863,190...78,884,644
JBrowse link
G SCFD1 sec1 family domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:68,694,579...68,851,055
Ensembl chr 7:68,691,239...68,851,008
JBrowse link
G SMCR8 SMCR8-C9orf72 complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:60,435,276...60,443,525
Ensembl chr12:60,435,273...60,443,520
JBrowse link
G TMEM39A transmembrane protein 39A involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:140,797,098...140,830,732
Ensembl chr13:140,797,205...140,831,277
JBrowse link
positive regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BECN1 beclin 1 ISO RGD PMID:25561470 RGD:11561937 NCBI chr12:20,041,914...20,054,249
Ensembl chr12:20,041,956...20,054,373
JBrowse link
G ELAPOR1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:110,881,770...110,954,092
Ensembl chr 4:110,881,773...110,954,065
JBrowse link
G LRSAM1 leucine rich repeat and sterile alpha motif containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:267,964,875...268,008,833
Ensembl chr 1:267,964,928...268,008,825
JBrowse link
G PIP4K2A phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:52,224,367...52,408,928
Ensembl chr10:52,223,425...52,408,922
JBrowse link
G PIP4K2B phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:23,317,113...23,345,661
Ensembl chr12:23,317,185...23,346,424
JBrowse link
G PIP4K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:22,854,142...22,867,032
Ensembl chr 5:22,854,137...22,867,037
JBrowse link
G RAB3GAP1 RAB3 GTPase activating protein catalytic subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:16,756,368...16,893,148
Ensembl chr15:16,753,877...16,816,754
JBrowse link
G RAB3GAP2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:9,734,766...9,828,330
Ensembl chr10:9,734,767...9,828,345
JBrowse link
G RALB RAS like proto-oncogene B involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:31,064,341...31,118,437
Ensembl chr15:31,064,355...31,122,621
JBrowse link
G SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:129,361,596...129,395,790
Ensembl chr 4:129,357,548...129,395,583
JBrowse link
G ULK1 unc-51 like autophagy activating kinase 1 ISO RGD PMID:23448468 RGD:13208863 NCBI chr14:23,423,693...23,448,130
Ensembl chr14:23,423,696...23,448,138
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16579
    cellular process 15862
      regulation of cellular process 10987
        regulation of cellular component biogenesis 1017
          regulation of organelle assembly 224
            regulation of autophagosome assembly 36
              negative regulation of autophagosome assembly 15
              positive regulation of autophagosome assembly 11
Path 2
Term Annotations click to browse term
  biological_process 16579
    cellular process 15862
      cellular metabolic process 9472
        cellular catabolic process 1980
          autophagy 429
            macroautophagy 227
              autophagosome organization 100
                autophagosome assembly 94
                  regulation of autophagosome assembly 36
                    negative regulation of autophagosome assembly 15
                    positive regulation of autophagosome assembly 11
paths to the root