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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of autophagosome assembly
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Accession:GO:2000785 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of autophagosome assembly.
Synonyms:exact_synonym: regulation of autophagic vacuole assembly;   regulation of autophagosome biosynthesis;   regulation of autophagosome formation
 related_synonym: regulation of PAS formation;   regulation of autophagic vacuole formation


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regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C9orf72 C9orf72, member of C9orf72-SMCR8 complex involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:35,191,285...35,226,153
Ensembl chr 4:35,191,285...35,226,175
JBrowse link
G Ift20 intraflagellar transport 20 involved_in IMP (MGI:5527012|PMID:24089209) UniProt PMID:24089209 MGI:5527012 NCBI chr11:78,536,361...78,541,732
Ensembl chr11:78,536,361...78,541,737
JBrowse link
G Ift88 intraflagellar transport 88 involved_in IMP (MGI:5527012|PMID:24089209) UniProt PMID:24089209 MGI:5527012 NCBI chr14:57,424,064...57,517,936
Ensembl chr14:57,424,062...57,517,936
JBrowse link
G Mtmr3 myotubularin related protein 3 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:4,480,867...4,594,863
Ensembl chr11:4,480,868...4,594,863
JBrowse link
G Nprl2 NPR2 like, GATOR1 complex subunit involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 9:107,542,177...107,545,706
Ensembl chr 9:107,542,226...107,545,706
JBrowse link
G Nprl3 nitrogen permease regulator-like 3 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr11:32,231,963...32,267,707
Ensembl chr11:32,225,628...32,267,707
JBrowse link
G Pikfyve phosphoinositide kinase, FYVE type zinc finger containing involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:65,186,640...65,278,696
Ensembl chr 1:65,186,683...65,278,695
JBrowse link
G Rab1b RAB1B, member RAS oncogene family involved_in ISO (PMID:20545908) UniProt PMID:20545908 NCBI chr19:5,099,207...5,106,996
Ensembl chr19:5,099,205...5,107,072
JBrowse link
G Rnf5 ring finger protein 5 acts_upstream_of_or_within IMP (MGI:5469257|PMID:23093945) MGI PMID:23093945 MGI:5469257 NCBI chr17:34,601,099...34,603,561
Ensembl chr17:34,601,091...34,603,690
JBrowse link
G Tbc1d12 TBC1D12: TBC1 domain family, member 12 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr19:38,836,579...38,919,670
Ensembl chr19:38,836,579...38,919,923
JBrowse link
G Tbc1d14 TBC1 domain family, member 14 involved_in IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 5:36,490,604...36,586,271
Ensembl chr 5:36,490,604...36,593,276
JBrowse link
G Ubqln2 ubiquilin 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr  X:153,498,232...153,501,562
Ensembl chr  X:153,498,227...153,501,570
JBrowse link
negative regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Becn1 beclin 1, autophagy related acts_upstream_of_or_within IMP (MGI:5888970|PMID:27994061) MGI PMID:27994061 MGI:5888970 NCBI chr11:101,288,258...101,302,286
Ensembl chr11:101,285,952...101,302,286
JBrowse link
G Chmp4b charged multivesicular body protein 4B involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:154,657,026...154,694,783
Ensembl chr 2:154,651,705...154,694,785
JBrowse link
G Ehmt2 euchromatic histone lysine N-methyltransferase 2 acts_upstream_of_or_within IMP (MGI:5543871|PMID:23918802) MGI PMID:23918802 MGI:5543871 NCBI chr17:34,898,463...34,914,073
Ensembl chr17:34,898,469...34,914,052
JBrowse link
G Fez1 fasciculation and elongation protein zeta 1 (zygin I) involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:36,821,398...36,878,926
Ensembl chr 9:36,821,864...36,878,924
JBrowse link
G Fez2 fasciculation and elongation protein zeta 2 (zygin II) involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr17:78,369,212...78,418,152
Ensembl chr17:78,369,212...78,418,152
JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 involved_in IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr15:91,672,791...91,816,124
Ensembl chr15:91,673,175...91,816,120
JBrowse link
G Mtm1 X-linked myotubular myopathy gene 1 acts_upstream_of_or_within
involved_in
IMP
IBA
(MGI:5510937|PMID:23695157)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:21873635 PMID:23695157 MGI:5510937 MGI:6201960 NCBI chr  X:71,210,767...71,315,413
Ensembl chr  X:71,210,767...71,315,691
JBrowse link
G Nupr1 nuclear protein transcription regulator 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 7:126,623,246...126,625,470
Ensembl chr 7:126,623,249...126,630,861
JBrowse link
G Phf23 PHD finger protein 23 involved_in IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr11:69,995,766...70,000,011
Ensembl chr11:69,995,777...70,000,009
JBrowse link
G Pink1 PTEN induced putative kinase 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:138,313,409...138,326,296
Ensembl chr 4:138,313,409...138,326,307
JBrowse link
G Scfd1 Sec1 family domain containing 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr12:51,377,513...51,450,104
Ensembl chr12:51,377,510...51,450,101
JBrowse link
G Sec22b SEC22 homolog B, vesicle trafficking protein involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 3:97,901,227...97,922,318
Ensembl chr 3:97,901,190...97,923,276
JBrowse link
G Smcr8 Smith-Magenis syndrome chromosome region, candidate 8 homolog (human) involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:60,777,525...60,788,287
Ensembl chr11:60,777,524...60,788,287
JBrowse link
G Tmem39a transmembrane protein 39a involved_in IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr16:38,558,698...38,592,162
Ensembl chr16:38,558,698...38,592,162
JBrowse link
positive regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Becn1 beclin 1, autophagy related involved_in ISO RGD
MGI
PMID:25561470 GO_REF:0000096 MGI:4417868 RGD:11561937 NCBI chr11:101,288,258...101,302,286
Ensembl chr11:101,285,952...101,302,286
JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 3:108,455,679...108,536,745
Ensembl chr 3:108,455,694...108,536,536
JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:32,925,215...32,961,654
Ensembl chr 2:32,925,216...32,961,614
JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase, type II, alpha involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:18,842,255...18,998,291
Ensembl chr 2:18,842,255...18,998,126
JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase, type II, beta involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:97,715,157...97,744,704
Ensembl chr11:97,715,157...97,744,704
JBrowse link
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase, type II, gamma involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:127,197,067...127,211,628
Ensembl chr10:127,197,067...127,211,585
JBrowse link
G Rab3gap1 RAB3 GTPase activating protein subunit 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:127,868,755...127,943,876
Ensembl chr 1:127,868,773...127,943,868
JBrowse link
G Rab3gap2 RAB3 GTPase activating protein subunit 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:185,204,088...185,286,756
Ensembl chr 1:185,204,117...185,286,759
JBrowse link
G Ralb v-ral simian leukemia viral oncogene B involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:119,470,305...119,504,782
Ensembl chr 1:119,470,305...119,504,794
JBrowse link
G Sh3glb1 SH3-domain GRB2-like B1 (endophilin) involved_in ISO
IMP
(MGI:5634888|PMID:21068542) MGI
UniProt
PMID:21068542 GO_REF:0000096 MGI:4834177 MGI:5634888 NCBI chr 3:144,683,665...144,720,408
Ensembl chr 3:144,683,678...144,720,335
JBrowse link
G Ulk1 unc-51 like kinase 1 involved_in ISO RGD
MGI
PMID:23448468 GO_REF:0000096 MGI:4417868 RGD:13208863 NCBI chr 5:110,784,489...110,810,120
Ensembl chr 5:110,784,488...110,810,097
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28611
    cellular process 17617
      regulation of cellular process 12012
        regulation of cellular component biogenesis 1036
          regulation of organelle assembly 229
            regulation of autophagosome assembly 36
              negative regulation of autophagosome assembly 14
              positive regulation of autophagosome assembly 11
Path 2
Term Annotations click to browse term
  biological_process 28611
    cellular process 17617
      cellular metabolic process 10085
        cellular catabolic process 2146
          autophagy 459
            macroautophagy 230
              autophagosome organization 102
                autophagosome assembly 96
                  regulation of autophagosome assembly 36
                    negative regulation of autophagosome assembly 14
                    positive regulation of autophagosome assembly 11
paths to the root