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ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of autophagosome assembly
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Accession:GO:2000785 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of autophagosome assembly.
Synonyms:exact_synonym: regulation of autophagic vacuole assembly;   regulation of autophagosome biosynthesis;   regulation of autophagosome formation
 related_synonym: regulation of PAS formation;   regulation of autophagic vacuole formation


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regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C9orf72 C9orf72-SMCR8 complex subunit involved_in IMP (PMID:27334615) UniProt PMID:27334615 NCBI chr 9:27,546,546...27,573,866
Ensembl chr 9:27,535,640...27,573,866 		JBrowse link
G EFNB1 ephrin B1 acts_upstream_of_positive_effect IDA (PMID:33280498) UniProt PMID:33280498 NCBI chr  X:68,829,021...68,842,160
Ensembl chr  X:68,829,021...68,842,160 		JBrowse link
G EPHB2 EPH receptor B2 acts_upstream_of_positive_effect IDA (PMID:33280498) UniProt PMID:33280498 NCBI chr 1:22,710,838...22,921,500
Ensembl chr 1:22,710,839...22,921,500 		JBrowse link
G IFT20 intraflagellar transport 20 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr17:28,328,326...28,335,472
Ensembl chr17:28,328,325...28,335,489 		JBrowse link
G IFT88 intraflagellar transport 88 involved_in ISS UniProt GO_REF:0000024 NCBI chr13:20,567,157...20,691,444
Ensembl chr13:20,567,138...20,691,444 		JBrowse link
G MTMR3 myotubularin related protein 3 involved_in IMP (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chr22:29,883,174...30,030,868
Ensembl chr22:29,883,169...30,030,868 		JBrowse link
G MTOR mechanistic target of rapamycin kinase involved_in IDA (PMID:23524951) UniProt PMID:23524951 NCBI chr 1:11,106,535...11,262,551
Ensembl chr 1:11,106,535...11,262,556 		JBrowse link
G PIKFYVE phosphoinositide kinase, FYVE-type zinc finger containing involved_in IMP (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chr 2:208,266,056...208,358,746
Ensembl chr 2:208,266,255...208,358,746 		JBrowse link
G RAB1B RAB1B, member RAS oncogene family involved_in IMP (PMID:20545908) UniProt PMID:20545908 NCBI chr11:66,268,639...66,277,492
Ensembl chr11:66,268,590...66,277,492 		JBrowse link
G RAB5A RAB5A, member RAS oncogene family involved_in TAS (PMID:24440914) ParkinsonsUK-UCL PMID:24440914 NCBI chr 3:19,947,097...19,985,175
Ensembl chr 3:19,947,097...19,985,175 		JBrowse link
G RNF186 ring finger protein 186 acts_upstream_of_positive_effect IDA (PMID:33280498) UniProt PMID:33280498 NCBI chr 1:19,814,029...19,815,283
Ensembl chr 1:19,814,029...19,815,283 		JBrowse link
G RNF5 ring finger protein 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23093945) Ensembl
MGI		 PMID:23093945 GO_REF:0000107 NCBI chr 6:32,178,405...32,180,793
Ensembl chr 6:32,178,405...32,180,793 		JBrowse link
G TBC1D12 TBC1 domain family member 12 involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:94,402,541...94,536,332
Ensembl chr10:94,402,541...94,536,332 		JBrowse link
G TBC1D14 TBC1 domain family member 14 involved_in IMP
IBA		 (PMID:22613832) BHF-UCL
GO_Central		 PMID:22613832 GO_REF:0000033 NCBI chr 4:6,909,466...7,033,114
Ensembl chr 4:6,909,242...7,033,118 		JBrowse link
G UBQLN2 ubiquilin 2 involved_in IMP (PMID:20529957) UniProt PMID:20529957 NCBI chr  X:56,563,627...56,567,868
Ensembl chr  X:56,563,627...56,567,868 		JBrowse link
negative regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BECN1 beclin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27994061) Ensembl
MGI		 PMID:27994061 GO_REF:0000107 NCBI chr17:42,810,132...42,824,282
Ensembl chr17:42,810,134...42,833,350 		JBrowse link
G EHMT2 euchromatic histone lysine methyltransferase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23918802) Ensembl
MGI		 PMID:23918802 GO_REF:0000107 NCBI chr 6:31,879,759...31,897,698
Ensembl chr 6:31,879,759...31,897,698 		JBrowse link
G FEZ1 fasciculation and elongation protein zeta 1 involved_in IMP (PMID:25495476) GO_Central PMID:25495476 NCBI chr11:125,442,881...125,496,265
Ensembl chr11:125,442,881...125,592,568 		JBrowse link
G FEZ2 fasciculation and elongation protein zeta 2 involved_in IMP (PMID:25495476) GO_Central PMID:25495476 NCBI chr 2:36,552,258...36,598,168
Ensembl chr 2:36,531,805...36,646,087 		JBrowse link
G LRRK2 leucine rich repeat kinase 2 involved_in IMP (PMID:23916833) ParkinsonsUK-UCL PMID:23916833 NCBI chr12:40,224,997...40,369,285
Ensembl chr12:40,196,744...40,369,285 		JBrowse link
G MTM1 myotubularin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:23695157) Ensembl
MGI
GO_Central
TreeGrafter		 PMID:23695157 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr  X:150,562,653...150,673,143
Ensembl chr  X:150,568,417...150,673,143 		JBrowse link
G NUPR1 nuclear protein 1, transcriptional regulator involved_in IMP (PMID:20181828) UniProt PMID:20181828 NCBI chr16:28,532,708...28,538,974
Ensembl chr16:28,532,708...28,539,008 		JBrowse link
G PHF23 PHD finger protein 23 involved_in IMP
IBA
IEA		 (PMID:25484098) GO_Central
TreeGrafter		 PMID:25484098 GO_REF:0000033 GO_REF:0000118 NCBI chr17:7,235,038...7,240,828
Ensembl chr17:7,235,029...7,239,722 		JBrowse link
G PINK1 PTEN induced kinase 1 involved_in IMP (PMID:19279012) ParkinsonsUK-UCL PMID:19279012 NCBI chr 1:20,633,458...20,651,511
Ensembl chr 1:20,633,458...20,651,511 		JBrowse link
G SCFD1 sec1 family domain containing 1 involved_in IMP (PMID:21242315) UniProt PMID:21242315 NCBI chr14:30,622,254...30,735,850
Ensembl chr14:30,622,291...30,737,694 		JBrowse link
G SEC22B SEC22 homolog B, vesicle trafficking protein involved_in IMP (PMID:21242315) UniProt PMID:21242315 NCBI chr 1:120,150,898...120,176,520
Ensembl chr 1:120,150,898...120,176,520 		JBrowse link
G SMCR8 SMCR8-C9orf72 complex subunit involved_in IMP (PMID:28195531) HGNC PMID:28195531 NCBI chr17:18,315,293...18,328,056
Ensembl chr17:18,315,293...18,328,056 		JBrowse link
G TMEM39A transmembrane protein 39A involved_in IMP
IEA
IBA		 (PMID:31806350) UniProt
TreeGrafter
GO_Central		 PMID:31806350 GO_REF:0000033 GO_REF:0000118 NCBI chr 3:119,428,949...119,463,615
Ensembl chr 3:119,428,949...119,468,830 		JBrowse link
positive regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG2A autophagy related 2A involved_in IDA (PMID:30952800), (PMID:31271352) UniProt PMID:30952800 PMID:31271352 NCBI chr11:64,894,546...64,917,209
Ensembl chr11:64,894,546...64,917,209 		JBrowse link
G BECN1 beclin 1 involved_in ISO
IEA		 RGD
Ensembl		 PMID:25561470 GO_REF:0000107 RGD:11561937 NCBI chr17:42,810,132...42,824,282
Ensembl chr17:42,810,134...42,833,350 		JBrowse link
G ELAPOR1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in IMP (PMID:21072319) BHF-UCL PMID:21072319 NCBI chr 1:109,114,115...109,206,781
Ensembl chr 1:109,113,679...109,206,781 		JBrowse link
G LRSAM1 leucine rich repeat and sterile alpha motif containing 1 involved_in IMP (PMID:25484098) GO_Central PMID:25484098 NCBI chr 9:127,451,486...127,503,501
Ensembl chr 9:127,451,489...127,503,499 		JBrowse link
G MOAP1 modulator of apoptosis 1 involved_in IEA
IMP		 (PMID:33783314) Ensembl
UniProt		 PMID:33783314 GO_REF:0000107 NCBI chr14:93,182,199...93,184,897
Ensembl chr14:93,182,199...93,184,923 		JBrowse link
G PIP4K2A phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in IMP (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chr10:22,534,854...22,714,578
Ensembl chr10:22,534,854...22,714,578 		JBrowse link
G PIP4K2B phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in IMP (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chr17:38,765,691...38,799,556
Ensembl chr17:38,765,691...38,800,126 		JBrowse link
G PIP4K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma involved_in IMP (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chr12:57,591,192...57,603,418
Ensembl chr12:57,591,174...57,603,418 		JBrowse link
G RAB3GAP1 RAB3 GTPase activating protein catalytic subunit 1 involved_in IMP (PMID:25495476) GO_Central PMID:25495476 NCBI chr 2:135,052,292...135,176,396
Ensembl chr 2:135,052,289...135,176,667 		JBrowse link
G RAB3GAP2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in IMP (PMID:25495476) GO_Central PMID:25495476 NCBI chr 1:220,148,293...220,272,453
Ensembl chr 1:220,148,293...220,272,529 		JBrowse link
G RALB RAS like proto-oncogene B involved_in IMP (PMID:24056301) UniProt PMID:24056301 NCBI chr 2:120,240,070...120,294,710
Ensembl chr 2:120,240,064...120,294,710 		JBrowse link
G SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 involved_in IMP (PMID:21068542) UniProt PMID:21068542 NCBI chr 1:86,704,576...86,748,184
Ensembl chr 1:86,704,570...86,748,184 		JBrowse link
G SNX18 sorting nexin 18 involved_in IMP (PMID:29437695) UniProt PMID:29437695 NCBI chr 5:54,517,759...54,648,005
Ensembl chr 5:54,517,759...54,546,586 		JBrowse link
G SNX30 sorting nexin family member 30 involved_in IMP (PMID:32513819) UniProt PMID:32513819 NCBI chr 9:112,749,723...112,885,769
Ensembl chr 9:112,750,760...112,881,671 		JBrowse link
G SNX4 sorting nexin 4 involved_in IMP
IBA
IEA		 (PMID:32513819), (PMID:33468622) UniProt
GO_Central
TreeGrafter		 PMID:32513819 PMID:33468622 GO_REF:0000033 GO_REF:0000118 NCBI chr 3:125,446,650...125,520,202
Ensembl chr 3:125,446,650...125,520,202 		JBrowse link
G SNX7 sorting nexin 7 involved_in IMP (PMID:32513819) UniProt PMID:32513819 NCBI chr 1:98,661,319...98,760,500
Ensembl chr 1:98,661,701...98,760,500 		JBrowse link
G TRIM32 tripartite motif containing 32 involved_in IDA (PMID:37943659) UniProt PMID:37943659 NCBI chr 9:116,687,305...116,701,299
Ensembl chr 9:116,687,305...116,701,300 		JBrowse link
G ULK1 unc-51 like autophagy activating kinase 1 involved_in ISO
IEA		 RGD
Ensembl		 PMID:23448468 GO_REF:0000107 RGD:13208863 NCBI chr12:131,894,622...131,923,150
Ensembl chr12:131,894,622...131,923,150 		JBrowse link
G WDR45 WD repeat domain 45 involved_in IDA (PMID:31271352) UniProt PMID:31271352 NCBI chr  X:49,074,442...49,101,178
Ensembl chr  X:49,074,433...49,101,170 		JBrowse link
G WIPI1 WD repeat domain, phosphoinositide interacting 1 involved_in IDA (PMID:31271352) UniProt PMID:31271352 NCBI chr17:68,421,281...68,457,496
Ensembl chr17:68,420,948...68,457,513 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19770
    cellular process 18460
      regulation of cellular process 12502
        regulation of cellular component biogenesis 1201
          regulation of organelle assembly 280
            regulation of autophagosome assembly 47
              negative regulation of autophagosome assembly 13
              positive regulation of autophagosome assembly 20
Path 2
Term Annotations click to browse term
  biological_process 19770
    cellular process 18460
      cellular metabolic process 11168
        cellular catabolic process 1899
          autophagy 629
            macroautophagy 369
              autophagosome organization 128
                autophagosome assembly 120
                  regulation of autophagosome assembly 47
                    negative regulation of autophagosome assembly 13
                    positive regulation of autophagosome assembly 20
paths to the root