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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of autophagosome assembly
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Accession:GO:2000785 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of autophagosome assembly.
Synonyms:exact_synonym: regulation of autophagic vacuole assembly;   regulation of autophagosome biosynthesis;   regulation of autophagosome formation
 related_synonym: regulation of PAS formation;   regulation of autophagic vacuole formation


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regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C9orf72 C9orf72-SMCR8 complex subunit involved_in ISO (PMID:27334615) UniProt PMID:27334615 NCBI chrNW_004955472:7,299,092...7,337,591
Ensembl chrNW_004955472:7,310,788...7,337,735
JBrowse link
G Ift20 intraflagellar transport 20 involved_in ISO (MGI:5527012|PMID:24089209) UniProt PMID:24089209 MGI:5527012 NCBI chrNW_004955481:4,799,548...4,807,751
Ensembl chrNW_004955481:4,799,548...4,807,751
JBrowse link
G Ift88 intraflagellar transport 88 involved_in ISO (MGI:5527012|PMID:24089209) UniProt PMID:24089209 MGI:5527012 NCBI chrNW_004955497:1,338,959...1,454,788
Ensembl chrNW_004955497:1,338,904...1,455,122
JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing involved_in ISO (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chrNW_004955457:6,749,226...6,841,855
Ensembl chrNW_004955457:6,748,534...6,842,489
JBrowse link
G Rab1b RAB1B, member RAS oncogene family involved_in ISO (PMID:20545908) UniProt PMID:20545908 NCBI chrNW_004955422:19,039,741...19,047,088
Ensembl chrNW_004955422:19,039,632...19,047,088
JBrowse link
G Rnf5 ring finger protein 5 acts_upstream_of_or_within ISO (MGI:5469257|PMID:23093945) MGI PMID:23093945 MGI:5469257 NCBI chrNW_004955437:643,133...645,528
Ensembl chrNW_004955437:643,170...645,528
JBrowse link
G Tbc1d14 TBC1 domain family member 14 involved_in ISO (PMID:22613832) BHF-UCL PMID:22613832 NCBI chrNW_004955514:3,485,975...3,553,840
Ensembl chrNW_004955514:3,485,841...3,567,377
JBrowse link
G Ubqln2 ubiquilin 2 involved_in ISO (PMID:20529957) UniProt PMID:20529957 NCBI chrNW_004955475:3,260,209...3,263,586
Ensembl chrNW_004955475:3,260,503...3,262,380
JBrowse link
negative regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Becn1 beclin 1 acts_upstream_of_or_within ISO (MGI:5888970|PMID:27994061) MGI PMID:27994061 MGI:5888970 NCBI chrNW_004955451:16,616,595...16,625,731
Ensembl chrNW_004955451:16,616,595...16,625,730
JBrowse link
G Chmp4b charged multivesicular body protein 4B involved_in ISO (PMID:21975012) UniProt PMID:21975012 NCBI chrNW_004955422:27,482,239...27,526,798
Ensembl chrNW_004955422:27,478,698...27,526,575
JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 acts_upstream_of_or_within ISO (MGI:5543871|PMID:23918802) MGI PMID:23918802 MGI:5543871 NCBI chrNW_004955437:396,736...411,144
Ensembl chrNW_004955437:396,742...411,144
JBrowse link
G Fez1 fasciculation and elongation protein zeta 1 involved_in ISO (PMID:25495476) GO_Central PMID:25495476 NCBI chrNW_004955412:26,477,995...26,530,686
Ensembl chrNW_004955412:26,477,301...26,531,354
JBrowse link
G Fez2 fasciculation and elongation protein zeta 2 involved_in ISO (PMID:25495476) GO_Central PMID:25495476 NCBI chrNW_004955441:4,421,936...4,456,070 JBrowse link
G Lrrk2 leucine rich repeat kinase 2 involved_in ISO (PMID:23916833) ParkinsonsUK-UCL PMID:23916833 NCBI chrNW_004955505:84,324...216,923
Ensembl chrNW_004955505:81,796...216,923
JBrowse link
G Mtm1 myotubularin 1 acts_upstream_of_or_within ISO (MGI:5510937|PMID:23695157) MGI PMID:23695157 MGI:5510937 NCBI chrNW_004955498:6,329,402...6,444,708
Ensembl chrNW_004955498:6,329,275...6,445,169
JBrowse link
G Nupr1 nuclear protein 1, transcriptional regulator involved_in ISO (PMID:20181828) UniProt PMID:20181828 NCBI chrNW_004955493:6,746,380...6,747,763
Ensembl chrNW_004955493:6,746,380...6,747,763
JBrowse link
G Phf23 PHD finger protein 23 involved_in ISO (PMID:25484098) GO_Central PMID:25484098 NCBI chrNW_004955467:9,671,133...9,675,434
Ensembl chrNW_004955467:9,671,133...9,675,434
JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO (PMID:19279012) ParkinsonsUK-UCL PMID:19279012 NCBI chrNW_004955452:1,171,115...1,186,338
Ensembl chrNW_004955452:1,171,205...1,185,125
JBrowse link
G Scfd1 sec1 family domain containing 1 involved_in ISO (PMID:21242315) UniProt PMID:21242315 NCBI chrNW_004955409:29,805,909...29,903,208
Ensembl chrNW_004955409:29,805,909...29,903,208
JBrowse link
G Sec22b SEC22 homolog B, vesicle trafficking protein involved_in ISO (PMID:21242315) UniProt PMID:21242315 NCBI chrNW_004955568:1,559,519...1,587,782
Ensembl chrNW_004955568:1,559,452...1,587,782
JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit involved_in ISO (PMID:28195531) HGNC PMID:28195531 NCBI chrNW_004955478:11,002,174...11,015,123
Ensembl chrNW_004955478:11,002,174...11,015,123
JBrowse link
G Tmem39a transmembrane protein 39A involved_in ISO (PMID:31806350) UniProt PMID:31806350 NCBI chrNW_004955427:19,118,631...19,184,315
Ensembl chrNW_004955427:19,133,434...19,184,344
JBrowse link
positive regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Becn1 beclin 1 ISO RGD PMID:25561470 RGD:11561937 NCBI chrNW_004955451:16,616,595...16,625,731
Ensembl chrNW_004955451:16,616,595...16,625,730
JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in ISO (PMID:21072319) BHF-UCL PMID:21072319 NCBI chrNW_004955435:12,531,651...12,626,969
Ensembl chrNW_004955435:12,531,642...12,627,874
JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 involved_in ISO (PMID:25484098) GO_Central PMID:25484098 NCBI chrNW_004955419:1,121,127...1,154,356
Ensembl chrNW_004955419:1,121,127...1,154,356
JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in ISO (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chrNW_004955429:6,231,135...6,399,672
Ensembl chrNW_004955429:6,336,355...6,399,672
JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in ISO (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chrNW_004955451:13,842,814...13,856,301
Ensembl chrNW_004955451:13,842,814...13,856,302
JBrowse link
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase type 2 gamma involved_in ISO (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chrNW_004955458:5,315,083...5,327,617
Ensembl chrNW_004955458:5,315,376...5,327,617
JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 involved_in ISO (PMID:25495476) GO_Central PMID:25495476 NCBI chrNW_004955440:2,551,015...2,645,938
Ensembl chrNW_004955440:2,550,982...2,646,331
JBrowse link
G Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in ISO (PMID:25495476) GO_Central PMID:25495476 NCBI chrNW_004955520:3,411,504...3,483,703
Ensembl chrNW_004955520:3,411,770...3,483,413
JBrowse link
G Ralb RAS like proto-oncogene B involved_in ISO (PMID:24056301) UniProt PMID:24056301 NCBI chrNW_004955459:9,533,081...9,574,464
Ensembl chrNW_004955459:9,531,538...9,574,766
JBrowse link
G Sh3glb1 SH3 domain containing GRB2 like, endophilin B1 involved_in ISO (PMID:21068542)
(MGI:5634888|PMID:21068542)
UniProt PMID:21068542 MGI:5634888 NCBI chrNW_004955423:7,393,186...7,414,199
Ensembl chrNW_004955423:7,393,186...7,423,903
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 ISO RGD PMID:23448468 RGD:13208863 NCBI chrNW_004955482:760,200...777,133
Ensembl chrNW_004955482:761,811...777,133
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11978
    cellular process 11211
      regulation of cellular process 7877
        regulation of cellular component biogenesis 916
          regulation of organelle assembly 207
            regulation of autophagosome assembly 32
              negative regulation of autophagosome assembly 14
              positive regulation of autophagosome assembly 11
Path 2
Term Annotations click to browse term
  biological_process 11978
    cellular process 11211
      cellular metabolic process 6947
        cellular catabolic process 1476
          autophagy 361
            macroautophagy 200
              autophagosome organization 82
                autophagosome assembly 77
                  regulation of autophagosome assembly 32
                    negative regulation of autophagosome assembly 14
                    positive regulation of autophagosome assembly 11
paths to the root