ONTOLOGY REPORT - ANNOTATIONS |
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Term: | regulation of autophagosome assembly |
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Accession: | GO:2000785
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browse the term
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Definition: | Any process that modulates the frequency, rate or extent of autophagosome assembly. |
Synonyms: | exact_synonym: | regulation of autophagic vacuole assembly; regulation of autophagosome biosynthesis; regulation of autophagosome formation |
| related_synonym: | regulation of PAS formation; regulation of autophagic vacuole formation |
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Chek2 |
checkpoint kinase 2 |
involved_in |
ISO |
(PMID:37943659) |
RGD |
PMID:37943659 |
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NCBI chr12:45,788,823...45,821,382
Ensembl chr12:45,788,827...45,821,286
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Efnb1 |
ephrin B1 |
involved_in acts_upstream_of_positive_effect |
IEA ISO |
GO_REF:0000107 (PMID:33280498) |
Ensembl RGD |
PMID:33280498 |
GO_REF:0000107 |
NCBI chr X:64,257,351...64,270,158
Ensembl chr X:64,257,351...64,270,157
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Ephb2 |
Eph receptor B2 |
acts_upstream_of_positive_effect |
ISO |
(PMID:33280498) |
RGD |
PMID:33280498 |
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NCBI chr 5:148,889,574...149,077,027
Ensembl chr 5:148,897,246...149,077,059
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Ift20 |
intraflagellar transport 20 |
involved_in |
ISO |
(PMID:24089209) |
RGD |
PMID:24089209 |
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NCBI chr10:63,432,597...63,438,125
Ensembl chr10:63,432,633...63,438,124
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Ift88 |
intraflagellar transport 88 |
involved_in |
ISO |
(PMID:24089209) |
RGD |
PMID:24089209 |
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NCBI chr15:31,573,325...31,666,068
Ensembl chr15:31,573,376...31,672,147
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Mtmr3 |
myotubularin related protein 3 |
involved_in |
IEA ISO |
GO_REF:0000107 (PMID:25578879) |
Ensembl RGD |
PMID:25578879 |
GO_REF:0000107 |
NCBI chr14:79,340,523...79,460,947
Ensembl chr14:79,340,513...79,461,041
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Mtor |
mechanistic target of rapamycin kinase |
involved_in |
ISO IEA |
(PMID:23524951) GO_REF:0000107 |
RGD Ensembl |
PMID:23524951 |
GO_REF:0000107 |
NCBI chr 5:158,884,856...158,994,311
Ensembl chr 5:158,884,804...158,994,311
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Pikfyve |
phosphoinositide kinase, FYVE-type zinc finger containing |
involved_in |
ISO |
(PMID:25578879) |
RGD |
PMID:25578879 |
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NCBI chr 9:66,563,747...66,657,873
Ensembl chr 9:66,563,727...66,657,868
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Rab1b |
RAB1B, member RAS oncogene family |
involved_in |
ISO |
(PMID:20545908) |
RGD |
PMID:20545908 |
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NCBI chr 1:202,405,759...202,413,850
Ensembl chr 1:202,405,759...202,413,868 Ensembl chr X:202,405,759...202,413,868
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RGD1359108 |
similar to RIKEN cDNA 3110043O21 |
involved_in |
ISO IEA ISS |
(PMID:27334615) GO_REF:0000107 GO_REF:0000024 |
RGD Ensembl UniProt |
PMID:27334615 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr 5:49,766,340...49,791,434
Ensembl chr 5:49,766,325...49,791,408
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Rnf186 |
ring finger protein 186 |
acts_upstream_of_positive_effect |
ISO |
(PMID:33280498) |
RGD |
PMID:33280498 |
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NCBI chr 5:151,210,492...151,211,716
Ensembl chr 5:151,210,492...151,211,716
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Rnf5 |
ring finger protein 5 |
acts_upstream_of_or_within |
ISO |
MGI:3775796 (PMID:23093945) |
RGD |
PMID:23093945 |
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NCBI chr20:4,145,539...4,147,985
Ensembl chr20:4,145,507...4,147,985
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Tbc1d14 |
TBC1 domain family, member 14 |
involved_in |
ISO IBA IEA |
(PMID:22613832) GO_REF:0000033 GO_REF:0000107 |
RGD GO_Central Ensembl |
PMID:22613832 |
GO_REF:0000033 GO_REF:0000107 |
NCBI chr14:74,172,652...74,272,182
Ensembl chr14:74,172,664...74,272,183
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Ubqln2 |
ubiquilin 2 |
involved_in |
ISO |
(PMID:20529957) |
RGD |
PMID:20529957 |
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NCBI chr X:17,853,086...17,856,505
Ensembl chr X:17,853,114...17,856,505
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Becn1 |
beclin 1 |
acts_upstream_of_or_within |
ISO |
MGI:2683833 (PMID:27994061) |
RGD |
PMID:27994061 |
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NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,231,388...86,246,742
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Ehmt2 |
euchromatic histone lysine methyltransferase 2 |
acts_upstream_of_or_within |
ISO |
(PMID:23918802) |
RGD |
PMID:23918802 |
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NCBI chr20:3,919,623...3,936,751
Ensembl chr20:3,919,624...3,941,547
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Fez1 |
fasciculation and elongation protein zeta 1 |
involved_in |
ISO ISS |
(PMID:25495476) GO_REF:0000024 |
RGD GO_Central |
PMID:25495476 |
GO_REF:0000024 |
NCBI chr 8:36,544,462...36,589,684
Ensembl chr 8:36,544,535...36,589,683
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Fez2 |
fasciculation and elongation protein zeta 2 |
involved_in |
ISS IEA ISO |
GO_REF:0000024 GO_REF:0000107 (PMID:25495476) |
GO_Central Ensembl RGD |
PMID:25495476 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr 6:16,654,572...16,694,628
Ensembl chr 6:16,654,614...16,694,626
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Lrrk2 |
leucine-rich repeat kinase 2 |
involved_in |
ISO |
(PMID:23916833) |
RGD |
PMID:23916833 |
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NCBI chr 7:122,826,696...122,987,711
Ensembl chr 7:122,826,696...122,987,703
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Mtm1 |
myotubularin 1 |
involved_in acts_upstream_of_or_within |
IBA ISO |
GO_REF:0000033 MGI:2450997 (PMID:23695157) |
GO_Central RGD |
PMID:23695157 |
GO_REF:0000033 |
NCBI chr 6:488,923...506,882
Ensembl chr 6:488,969...506,860
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Nupr1 |
nuclear protein 1, transcriptional regulator |
involved_in |
ISS ISO |
GO_REF:0000024 (PMID:20181828) |
UniProt RGD |
PMID:20181828 |
GO_REF:0000024 |
NCBI chr 1:181,213,292...181,215,327
Ensembl chr 1:181,213,368...181,215,281
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Phf23 |
PHD finger protein 23 |
involved_in |
ISO IBA IEA ISS |
(PMID:25484098) GO_REF:0000033 GO_REF:0000107 GO_REF:0000024 |
RGD GO_Central Ensembl |
PMID:25484098 |
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 |
NCBI chr10:54,718,663...54,722,784
Ensembl chr10:54,717,724...54,722,782
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Pink1 |
PTEN induced kinase 1 |
involved_in |
ISO |
(PMID:19279012) |
RGD |
PMID:19279012 |
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NCBI chr 5:150,530,523...150,542,635
Ensembl chr 5:150,530,523...150,542,635
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Scfd1 |
sec1 family domain containing 1 |
involved_in |
ISO |
(PMID:21242315) |
RGD |
PMID:21242315 |
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NCBI chr 6:68,795,810...68,874,076
Ensembl chr 6:68,795,878...68,874,078
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Sec22b |
SEC22 homolog B, vesicle trafficking protein |
involved_in |
ISO |
(PMID:21242315) |
RGD |
PMID:21242315 |
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NCBI chr 2:185,500,029...185,520,811
Ensembl chr 2:185,500,004...185,522,026
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Smcr8 |
SMCR8-C9orf72 complex subunit |
involved_in |
ISO |
(PMID:28195531) |
RGD |
PMID:28195531 |
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NCBI chr10:45,457,962...45,465,101
Ensembl chr10:45,457,605...45,468,876
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Tmem39a |
transmembrane protein 39a |
involved_in |
ISO IBA ISS |
(PMID:31806350) GO_REF:0000033 GO_REF:0000024 |
RGD GO_Central UniProt |
PMID:31806350 |
GO_REF:0000024 GO_REF:0000033 |
NCBI chr11:62,160,631...62,189,964
Ensembl chr11:62,160,631...62,189,964
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AABR07028769.1 |
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involved_in |
IEA |
GO_REF:0000107 |
Ensembl |
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GO_REF:0000107 |
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Atg2a |
autophagy related 2A |
involved_in |
ISO |
(PMID:30952800), (PMID:31271352) |
RGD |
PMID:30952800 PMID:31271352 |
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NCBI chr 1:203,542,559...203,562,242
Ensembl chr 1:203,542,559...203,562,242
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Atg7 |
autophagy related 7 |
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IMP |
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RGD |
PMID:33372336 |
RGD:407571673 |
NCBI chr 4:147,718,663...147,925,656
Ensembl chr 4:147,718,752...147,925,593
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Becn1 |
beclin 1 |
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IMP |
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RGD |
PMID:25561470 |
RGD:11561937 |
NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,231,388...86,246,742
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Elapor1 |
endosome-lysosome associated apoptosis and autophagy regulator 1 |
involved_in |
ISO |
(PMID:21072319) |
RGD |
PMID:21072319 |
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NCBI chr 2:196,089,199...196,169,055
Ensembl chr 2:196,091,646...196,168,716
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Lrsam1 |
leucine rich repeat and sterile alpha motif containing 1 |
involved_in |
ISO |
(PMID:25484098) |
RGD |
PMID:25484098 |
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NCBI chr 3:16,223,367...16,264,261
Ensembl chr 3:16,223,367...16,264,154
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Moap1 |
modulator of apoptosis 1 |
involved_in |
ISO |
(PMID:33783314) |
RGD |
PMID:33783314 |
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NCBI chr 6:121,882,565...121,884,500
Ensembl chr 6:121,882,366...121,898,643
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Pip4k2a |
phosphatidylinositol-5-phosphate 4-kinase type 2 alpha |
involved_in |
ISO IEA |
(PMID:25578879) GO_REF:0000107 |
RGD Ensembl |
PMID:25578879 |
GO_REF:0000107 |
NCBI chr17:81,496,669...81,668,180
Ensembl chr17:81,496,670...81,668,029
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Pip4k2b |
phosphatidylinositol-5-phosphate 4-kinase type 2 beta |
involved_in |
ISO IEA |
(PMID:25578879) GO_REF:0000107 |
RGD Ensembl |
PMID:25578879 |
GO_REF:0000107 |
NCBI chr10:82,706,016...82,734,938
Ensembl chr10:82,701,098...82,734,938
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Pip4k2c |
phosphatidylinositol-5-phosphate 4-kinase type 2 gamma |
involved_in |
ISO IEA |
(PMID:25578879) GO_REF:0000107 |
RGD Ensembl |
PMID:25578879 |
GO_REF:0000107 |
NCBI chr 7:63,020,004...63,035,086
Ensembl chr 7:63,020,000...63,035,078
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Rab3gap1 |
RAB3 GTPase activating protein catalytic subunit 1 |
involved_in |
ISO IBA IEA ISS |
(PMID:25495476) GO_REF:0000033 GO_REF:0000107 GO_REF:0000024 |
RGD GO_Central Ensembl |
PMID:25495476 |
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 |
NCBI chr13:39,355,698...39,429,154
Ensembl chr13:39,352,247...39,429,169
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Rab3gap2 |
RAB3 GTPase activating non-catalytic protein subunit 2 |
involved_in |
ISS IEA ISO |
GO_REF:0000024 GO_REF:0000107 (PMID:25495476) |
GO_Central Ensembl RGD |
PMID:25495476 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr13:96,757,430...96,828,930
Ensembl chr13:96,757,460...96,829,478
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Ralb |
RAS like proto-oncogene B |
involved_in |
ISO IEA |
(PMID:24056301) GO_REF:0000107 |
RGD Ensembl |
PMID:24056301 |
GO_REF:0000107 |
NCBI chr13:30,588,036...30,624,199
Ensembl chr13:30,588,033...30,624,202
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Sh3glb1 |
SH3 domain -containing GRB2-like endophilin B1 |
involved_in |
ISO IEA |
(PMID:21068542) GO_REF:0000107 |
RGD Ensembl |
PMID:21068542 |
GO_REF:0000107 |
NCBI chr 2:233,750,838...233,784,817
Ensembl chr 2:233,750,838...233,784,784
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Snx18 |
sorting nexin 18 |
involved_in |
ISO |
(PMID:29437695) |
RGD |
PMID:29437695 |
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NCBI chr 2:45,232,325...45,258,345
Ensembl chr 2:45,232,325...45,258,345
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Snx30 |
sorting nexin family member 30 |
involved_in |
ISO |
(PMID:32513819) |
RGD |
PMID:32513819 |
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NCBI chr 5:74,683,902...74,813,013
Ensembl chr 5:74,684,015...74,792,631
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Snx4 |
sorting nexin 4 |
involved_in |
ISO IBA |
(PMID:32513819), (PMID:33468622) GO_REF:0000033 |
RGD GO_Central |
PMID:32513819 PMID:33468622 |
GO_REF:0000033 |
NCBI chr11:67,460,872...67,518,143
Ensembl chr11:67,460,870...67,518,174
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Snx7 |
sorting nexin 7 |
involved_in |
ISO |
(PMID:32513819) |
RGD |
PMID:32513819 |
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NCBI chr 2:205,843,164...205,927,737
Ensembl chr 2:205,842,837...205,927,763
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Trim32 |
tripartite motif-containing 32 |
involved_in |
ISO |
(PMID:37943659) |
RGD |
PMID:37943659 |
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NCBI chr 5:79,005,139...79,016,615
Ensembl chr 5:78,999,389...79,022,018
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Ulk1 |
unc-51 like autophagy activating kinase 1 |
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IMP |
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RGD |
PMID:23448468 |
RGD:13208863 |
NCBI chr12:45,851,710...45,877,966
Ensembl chr12:45,851,710...45,877,966
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Wdr45 |
WD repeat domain 45 |
involved_in |
ISO IEA ISS |
(PMID:31271352) GO_REF:0000107 GO_REF:0000024 |
RGD Ensembl UniProt |
PMID:31271352 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr X:14,776,280...14,782,202
Ensembl chr X:14,776,293...14,782,202
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Wipi1 |
WD repeat domain, phosphoinositide interacting 1 |
involved_in |
ISO |
(PMID:31271352) |
RGD |
PMID:31271352 |
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NCBI chr10:94,542,946...94,580,174
Ensembl chr10:94,542,946...94,579,846
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