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ONTOLOGY REPORT - ANNOTATIONS


Term:omegasome
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Accession:GO:1990462 term browser browse the term
Definition:Omega-shaped (as in the Greek capital letter) intracellular membrane-bounded organelle enriched in phosphatidylinositol 3-phosphate and dynamically connected to the endoplasmic reticulum. Omegasomes are the first step of the formation of autophagosomes via the phagophore assembly sites.


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omegasome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trim5 tripartite motif-containing 5 colocalizes_with ISO (PMID:25127057) RGD PMID:25127057 NCBI chr 1:169,446,774...169,463,760
Ensembl chr 1:169,446,805...169,534,896
JBrowse link
G Zfyve1 zinc finger FYVE-type containing 1 located_in ISO (PMID:24954904), (PMID:25876663), (PMID:31293035) RGD PMID:24954904 PMID:25876663 PMID:31293035 NCBI chr 6:107,031,411...107,080,590
Ensembl chr 6:107,031,412...107,080,524
JBrowse link
extrinsic component of omegasome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg14 autophagy related 14 located_in
is_active_in
ISO
IBA
(PMID:21518905)
PMID:21873635
RGD PMID:21518905, PMID:21873635 RGD:13792537 NCBI chr15:24,343,418...24,374,776
Ensembl chr15:24,343,314...24,374,753
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 located_in ISO (PMID:22885598) RGD PMID:22885598 NCBI chr12:51,908,105...51,934,704
Ensembl chr12:51,908,448...51,934,702
JBrowse link
G Zfyve1 zinc finger FYVE-type containing 1 located_in ISO (PMID:19898463) RGD PMID:19898463 NCBI chr 6:107,031,411...107,080,590
Ensembl chr 6:107,031,412...107,080,524
JBrowse link
integral component of omegasome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Emc6 ER membrane protein complex subunit 6 located_in ISO (PMID:23182941) RGD PMID:23182941 NCBI chr10:59,741,772...59,743,338
Ensembl chr10:59,741,772...59,743,315
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20138
    cellular anatomical entity 19840
      endomembrane system 4012
        omegasome 5
          omegasome membrane + 4
Path 2
Term Annotations click to browse term
  cellular_component 20138
    cellular anatomical entity 19840
      organelle 13143
        membrane-bounded organelle 11695
          intracellular membrane-bounded organelle 11230
            omegasome 5
              omegasome membrane + 4
paths to the root