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ONTOLOGY REPORT - ANNOTATIONS

Term:DNA repair complex
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Accession:GO:1990391 term browser browse the term
Definition:A protein complex involved in DNA repair processes including direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
Synonyms:exact_synonym: DNA damage repair complex
 narrow_synonym: WHY1 complex

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DNA repair complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascc1 activating signal cointegrator 1 complex subunit 1 located_in ISO (PMID:29997253) ComplexPortal PMID:29997253 NCBI chrNW_004955437:19,381,279...19,487,057
Ensembl chrNW_004955437:19,381,279...19,490,822 		JBrowse link
G Ascc2 activating signal cointegrator 1 complex subunit 2 located_in ISO (PMID:29997253) ComplexPortal PMID:29997253 NCBI chrNW_004955455:4,032,357...4,077,900
Ensembl chrNW_004955455:4,032,194...4,077,953 		JBrowse link
G Ascc3 activating signal cointegrator 1 complex subunit 3 located_in ISO (PMID:29997253) ComplexPortal PMID:29997253 NCBI chrNW_004955411:26,305,103...26,599,375
Ensembl chrNW_004955411:26,302,597...26,598,824 		JBrowse link
G Atm ATM serine/threonine kinase part_of ISO (PMID:24217620) MGI PMID:24217620 NCBI chrNW_004955412:10,422,753...10,531,406
Ensembl chrNW_004955412:10,426,135...10,530,545 		JBrowse link
G Brca1 BRCA1 DNA repair associated located_in ISO (PMID:19369211) ComplexPortal PMID:19369211 NCBI chrNW_004955451:16,819,463...16,870,780
Ensembl chrNW_004955451:16,819,023...16,855,528 		JBrowse link
G Brca2 BRCA2 DNA repair associated located_in ISO (PMID:19369211) ComplexPortal PMID:19369211 NCBI chrNW_004955431:13,449,287...13,526,878
Ensembl chrNW_004955431:13,449,543...13,527,432 		JBrowse link
G Fancd2 FA complementation group D2 located_in ISO (PMID:32269332) ComplexPortal PMID:32269332 NCBI chrNW_004955561:1,460,080...1,538,026
Ensembl chrNW_004955561:1,464,869...1,538,045 		JBrowse link
G Fanci FA complementation group I located_in ISO (PMID:32269332) ComplexPortal PMID:32269332 NCBI chrNW_004955416:15,788,812...15,857,933
Ensembl chrNW_004955416:15,788,922...15,853,480 		JBrowse link
G Kdm1a lysine demethylase 1A part_of ISO (PMID:24217620) MGI PMID:24217620 NCBI chrNW_004955452:3,044,042...3,104,650
Ensembl chrNW_004955452:3,044,264...3,104,418 		JBrowse link
G Palb2 partner and localizer of BRCA2 located_in ISO (PMID:19369211) ComplexPortal PMID:19369211 NCBI chrNW_004955493:2,149,053...2,175,482
Ensembl chrNW_004955493:2,147,862...2,175,781 		JBrowse link
G Phf21a PHD finger protein 21A part_of ISO (PMID:24217620) MGI PMID:24217620 NCBI chrNW_004955422:1,857,335...2,045,816
Ensembl chrNW_004955422:1,857,335...2,045,816 		JBrowse link
G Rcor1 REST corepressor 1 part_of ISO (PMID:24217620) MGI PMID:24217620 NCBI chrNW_004955538:1,774,910...1,880,550
Ensembl chrNW_004955538:1,774,910...1,880,545 		JBrowse link
G Rnf168 ring finger protein 168 part_of ISO (PMID:24217620) MGI PMID:24217620 NCBI chrNW_004955420:12,656,815...12,676,836
Ensembl chrNW_004955420:12,657,272...12,676,426 		JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 part_of ISO (PMID:24217620) MGI PMID:24217620 NCBI chrNW_004955416:9,962,736...10,035,433
Ensembl chrNW_004955416:9,962,897...10,035,278 		JBrowse link
DNA ligase IV complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lig4 DNA ligase 4 part_of ISO (PMID:9809069) UniProt PMID:9809069 NCBI chrNW_004955404:3,606,077...3,615,193
Ensembl chrNW_004955404:3,606,077...3,615,193 		JBrowse link
G Xrcc4 X-ray repair cross complementing 4 part_of ISO (PMID:9242410) UniProt PMID:9242410 NCBI chrNW_004955418:27,174,510...27,426,245
Ensembl chrNW_004955418:27,173,659...27,426,264 		JBrowse link
DNA-dependent protein kinase-DNA ligase 4 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lig4 DNA ligase 4 part_of ISO (PMID:15194694), (PMID:34352203) UniProt
MGI		 PMID:15194694 PMID:34352203 NCBI chrNW_004955404:3,606,077...3,615,193
Ensembl chrNW_004955404:3,606,077...3,615,193 		JBrowse link
G Nhej1 non-homologous end joining factor 1 part_of ISO (PMID:34352203) UniProt PMID:34352203 NCBI chrNW_004955453:14,278,773...14,362,167
Ensembl chrNW_004955453:14,281,069...14,363,876 		JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit part_of ISO (PMID:15194694), (PMID:34352203) MGI PMID:15194694 PMID:34352203 NCBI chrNW_004955454:7,733,697...7,890,896
Ensembl chrNW_004955454:7,733,978...7,890,867 		JBrowse link
G Xrcc4 X-ray repair cross complementing 4 part_of ISO (PMID:15194694), (PMID:34352203) UniProt
MGI		 PMID:15194694 PMID:34352203 NCBI chrNW_004955418:27,174,510...27,426,245
Ensembl chrNW_004955418:27,173,659...27,426,264 		JBrowse link
G Xrcc5 X-ray repair cross complementing 5 part_of ISO (PMID:34352203) UniProt PMID:34352203 NCBI chrNW_004955453:16,967,453...17,054,634
Ensembl chrNW_004955453:16,967,453...17,054,634 		JBrowse link
G Xrcc6 X-ray repair cross complementing 6 part_of ISO (PMID:34352203) UniProt PMID:34352203 NCBI chrNW_004955413:27,135,785...27,158,344
Ensembl chrNW_004955413:27,135,805...27,159,750 		JBrowse link
nonhomologous end joining complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dclre1c DNA cross-link repair 1C part_of ISO (PMID:25941166) UniProt PMID:25941166 NCBI chrNW_004955429:19,461,446...19,501,908
Ensembl chrNW_004955429:19,461,528...19,505,321 		JBrowse link
G Lig4 DNA ligase 4 part_of ISO (PMID:20383123), (PMID:25941166) UniProt PMID:20383123 PMID:25941166 NCBI chrNW_004955404:3,606,077...3,615,193
Ensembl chrNW_004955404:3,606,077...3,615,193 		JBrowse link
G Nhej1 non-homologous end joining factor 1 part_of ISO (PMID:20383123), (PMID:25941166) UniProt PMID:20383123 PMID:25941166 NCBI chrNW_004955453:14,278,773...14,362,167
Ensembl chrNW_004955453:14,281,069...14,363,876 		JBrowse link
G Paxx PAXX non-homologous end joining factor part_of ISO (PMID:25670504), (PMID:25941166) UniProt PMID:25670504 PMID:25941166 NCBI chrNW_004955513:5,017,971...5,019,489
Ensembl chrNW_004955513:5,017,971...5,019,489 		JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit part_of ISO (PMID:20383123), (PMID:25941166) UniProt PMID:20383123 PMID:25941166 NCBI chrNW_004955454:7,733,697...7,890,896
Ensembl chrNW_004955454:7,733,978...7,890,867 		JBrowse link
G Xrcc4 X-ray repair cross complementing 4 part_of ISO (PMID:20383123), (PMID:25941166) UniProt PMID:20383123 PMID:25941166 NCBI chrNW_004955418:27,174,510...27,426,245
Ensembl chrNW_004955418:27,173,659...27,426,264 		JBrowse link
G Xrcc5 X-ray repair cross complementing 5 part_of ISO (PMID:20383123), (PMID:25941166) UniProt PMID:20383123 PMID:25941166 NCBI chrNW_004955453:16,967,453...17,054,634
Ensembl chrNW_004955453:16,967,453...17,054,634 		JBrowse link
G Xrcc6 X-ray repair cross complementing 6 part_of ISO (PMID:20383123), (PMID:25941166) UniProt PMID:20383123 PMID:25941166 NCBI chrNW_004955413:27,135,785...27,158,344
Ensembl chrNW_004955413:27,135,805...27,159,750 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 12554
    protein-containing complex 4416
      catalytic complex 1326
        DNA repair complex 22
          MutS complex 0
          excinuclease repair complex 0
          nonhomologous end joining complex + 8
paths to the root