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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA repair complex
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Accession:GO:1990391 term browser browse the term
Definition:A protein complex involved in DNA repair processes including direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
Synonyms:exact_synonym: DNA damage repair complex
 narrow_synonym: WHY1 complex



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DNA repair complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascc1 activating signal cointegrator 1 complex subunit 1 located_in ISO (PMID:29997253) RGD PMID:29997253 NCBI chr20:27,941,053...28,031,272
Ensembl chr20:27,941,283...28,031,272
JBrowse link
G Ascc2 activating signal cointegrator 1 complex subunit 2 located_in ISO (PMID:29997253) RGD PMID:29997253 NCBI chr14:79,503,449...79,547,801
Ensembl chr14:79,503,517...79,545,494
JBrowse link
G Ascc3 activating signal cointegrator 1 complex subunit 3 located_in ISO (PMID:29997253) RGD PMID:29997253 NCBI chr20:53,510,137...53,795,446
Ensembl chr20:53,510,184...53,790,165
JBrowse link
G Atm ATM serine/threonine kinase part_of ISO (PMID:24217620) RGD PMID:24217620 NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437
JBrowse link
G Brca1 BRCA1, DNA repair associated located_in
part_of
ISO
IEA
(PMID:19369211)
GO_REF:0000107
RGD
Ensembl
PMID:19369211 GO_REF:0000107 NCBI chr10:86,417,441...86,477,762
Ensembl chr10:86,418,000...86,477,304
JBrowse link
G Brca2 BRCA2, DNA repair associated located_in
part_of
ISO
IEA
(PMID:19369211)
GO_REF:0000107
RGD
Ensembl
PMID:19369211 GO_REF:0000107 NCBI chr12:59,492...103,789
Ensembl chr12:59,819...100,567
JBrowse link
G Fancd2 FA complementation group D2 located_in ISO (PMID:32269332) RGD PMID:32269332 NCBI chr 4:146,679,014...146,743,422
Ensembl chr 4:146,679,179...146,743,412
JBrowse link
G Fanci FA complementation group I located_in ISO (PMID:32269332) RGD PMID:32269332 NCBI chr 1:133,327,264...133,383,661
Ensembl chr 1:133,327,297...133,383,640
JBrowse link
G Kdm1a lysine demethylase 1A part_of ISO (PMID:24217620) RGD PMID:24217620 NCBI chr 5:148,782,976...148,838,319
Ensembl chr 5:148,782,976...148,838,319
JBrowse link
G Palb2 partner and localizer of BRCA2 located_in ISO (PMID:19369211) RGD PMID:19369211 NCBI chr 1:176,665,076...176,689,053
Ensembl chr 1:176,665,076...176,688,990
JBrowse link
G Phf21a PHD finger protein 21A part_of ISO (PMID:24217620) RGD PMID:24217620 NCBI chr 3:78,158,760...78,331,903
Ensembl chr 3:78,194,549...78,331,865
JBrowse link
G Rcor1 REST corepressor 1 part_of ISO (PMID:24217620) RGD PMID:24217620 NCBI chr 6:130,069,606...130,146,164
Ensembl chr 6:130,069,392...130,146,153
JBrowse link
G Rnf168 ring finger protein 168 part_of ISO (MGI:5562615|PMID:24217620) RGD PMID:24217620 MGI:5562615 NCBI chr11:68,486,313...68,508,296
Ensembl chr11:68,486,321...68,508,277
JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 part_of ISO (MGI:5562615|PMID:24217620) RGD PMID:24217620 MGI:5562615 NCBI chr 3:108,166,574...108,270,229
Ensembl chr 3:108,169,980...108,269,822
JBrowse link
DNA ligase IV complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lig4 DNA ligase 4 part_of IBA
ISO
PMID:21873635
(PMID:9809069)
RGD PMID:9809069 PMID:21873635 RGD:13792537 NCBI chr16:79,518,393...79,526,956
Ensembl chr16:79,518,312...79,527,040
JBrowse link
G Nhej1 nonhomologous end-joining factor 1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:76,526,322...76,622,488
Ensembl chr 9:76,526,324...76,622,444
JBrowse link
G Xrcc4 X-ray repair cross complementing 4 part_of IBA
ISO
PMID:21873635
(PMID:9242410)
RGD PMID:9242410 PMID:21873635 RGD:13792537 NCBI chr 2:20,948,464...21,197,705
Ensembl chr 2:20,951,200...21,197,808
JBrowse link
DNA-dependent protein kinase-DNA ligase 4 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lig4 DNA ligase 4 part_of IBA
ISO
PMID:21873635
(PMID:15194694)
(MGI:3052572|PMID:15194694)
RGD PMID:15194694 PMID:21873635 MGI:3052572, RGD:13792537 NCBI chr16:79,518,393...79,526,956
Ensembl chr16:79,518,312...79,527,040
JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit part_of ISO (PMID:15194694) RGD PMID:15194694 NCBI chr11:85,040,790...85,258,357
Ensembl chr11:85,040,792...85,257,952
JBrowse link
G Xrcc4 X-ray repair cross complementing 4 part_of IBA
ISO
PMID:21873635
(PMID:15194694)
(MGI:3052572|PMID:15194694)
RGD PMID:15194694 PMID:21873635 MGI:3052572, RGD:13792537 NCBI chr 2:20,948,464...21,197,705
Ensembl chr 2:20,951,200...21,197,808
JBrowse link
G Xrcc5 X-ray repair cross complementing 5 TAS RGD PMID:11966321 RGD:727219 NCBI chr 9:73,955,220...74,044,020
Ensembl chr 9:73,955,216...74,044,018
JBrowse link
nonhomologous end joining complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dclre1c DNA cross-link repair 1C part_of ISO
ISS
(PMID:25941166)
GO_REF:0000024
RGD
UniProt
PMID:25941166 GO_REF:0000024 NCBI chr17:74,775,828...74,810,089
Ensembl chr17:74,776,935...74,809,186
JBrowse link
G Lig4 DNA ligase 4 part_of ISO (PMID:20383123), (PMID:25941166) RGD PMID:20383123 PMID:25941166 NCBI chr16:79,518,393...79,526,956
Ensembl chr16:79,518,312...79,527,040
JBrowse link
G Nhej1 nonhomologous end-joining factor 1 part_of IBA
ISS
ISO
PMID:21873635
GO_REF:0000024
(PMID:20383123), (PMID:25941166)
UniProt
RGD
PMID:20383123 PMID:25941166 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 9:76,526,322...76,622,488
Ensembl chr 9:76,526,324...76,622,444
JBrowse link
G Paxx PAXX, non-homologous end joining factor part_of IBA
ISO
PMID:21873635
(PMID:25670504), (PMID:25941166)
RGD PMID:25670504 PMID:25941166 PMID:21873635 RGD:13792537 NCBI chr 3:8,274,762...8,276,338
Ensembl chr 3:8,274,762...8,276,521
JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit part_of ISO (PMID:20383123), (PMID:25941166) RGD PMID:20383123 PMID:25941166 NCBI chr11:85,040,790...85,258,357
Ensembl chr11:85,040,792...85,257,952
JBrowse link
G Xrcc4 X-ray repair cross complementing 4 part_of ISO (PMID:20383123), (PMID:25941166) RGD PMID:20383123 PMID:25941166 NCBI chr 2:20,948,464...21,197,705
Ensembl chr 2:20,951,200...21,197,808
JBrowse link
G Xrcc5 X-ray repair cross complementing 5 part_of ISO (PMID:20383123), (PMID:25941166) RGD PMID:20383123 PMID:25941166 NCBI chr 9:73,955,220...74,044,020
Ensembl chr 9:73,955,216...74,044,018
JBrowse link
G Xrcc6 X-ray repair cross complementing 6 part_of ISO (PMID:20383123), (PMID:25941166) RGD PMID:20383123 PMID:25941166 NCBI chr 7:113,542,992...113,563,762
Ensembl chr 7:113,543,057...113,563,762
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20534
    protein-containing complex 6321
      catalytic complex 1869
        DNA repair complex 22
          MutS complex 0
          excinuclease repair complex 0
          nonhomologous end joining complex + 8
paths to the root