Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:DNA repair complex
go back to main search page
Accession:GO:1990391 term browser browse the term
Definition:A protein complex involved in DNA repair processes including direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
Synonyms:exact_synonym: DNA damage repair complex
 narrow_synonym: WHY1 complex


show annotations for term's descendants           Sort by:
 
DNA repair complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase part_of ISO (PMID:24217620) RGD PMID:24217620 NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437
JBrowse link
G Kdm1a lysine demethylase 1A part_of ISO (PMID:24217620) RGD PMID:24217620 NCBI chr 5:148,782,976...148,838,319
Ensembl chr 5:148,782,976...148,838,319
JBrowse link
G Phf21a PHD finger protein 21A part_of ISO (PMID:24217620) RGD PMID:24217620 NCBI chr 3:78,158,760...78,331,903
Ensembl chr 3:78,194,549...78,331,865
JBrowse link
G Rcor1 REST corepressor 1 part_of ISO (PMID:24217620) RGD PMID:24217620 NCBI chr 6:130,069,606...130,146,164
Ensembl chr 6:130,069,392...130,146,153
JBrowse link
G Rnf168 ring finger protein 168 part_of ISO (MGI:5562615|PMID:24217620) RGD PMID:24217620 MGI:5562615 NCBI chr11:68,486,313...68,508,296
Ensembl chr11:68,486,321...68,508,277
JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 part_of ISO (MGI:5562615|PMID:24217620) RGD PMID:24217620 MGI:5562615 NCBI chr 3:108,166,574...108,270,229
Ensembl chr 3:108,169,980...108,269,822
JBrowse link
DNA-dependent protein kinase-DNA ligase 4 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lig4 DNA ligase 4 part_of IBA
ISO
PMID:21873635
(PMID:15194694)
(MGI:3052572|PMID:15194694)
RGD PMID:15194694 PMID:21873635 MGI:3052572, RGD:13792537 NCBI chr16:79,518,393...79,526,956
Ensembl chr16:79,518,312...79,527,040
JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit part_of ISO (PMID:15194694) RGD PMID:15194694 NCBI chr11:85,040,790...85,258,357
Ensembl chr11:85,040,792...85,257,952
JBrowse link
G Xrcc4 X-ray repair cross complementing 4 part_of IBA
ISO
PMID:21873635
(PMID:15194694)
(MGI:3052572|PMID:15194694)
RGD PMID:15194694 PMID:21873635 MGI:3052572, RGD:13792537 NCBI chr 2:20,948,464...21,197,705
Ensembl chr 2:20,951,200...21,197,808
JBrowse link
G Xrcc5 X-ray repair cross complementing 5 TAS RGD PMID:11966321 RGD:727219 NCBI chr 9:73,955,220...74,044,020
Ensembl chr 9:73,955,216...74,044,018
JBrowse link
ERCC4-ERCC1 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit part_of ISO
IBA
(PMID:14690602), (PMID:17055345)
PMID:21873635
RGD PMID:14690602 PMID:17055345 PMID:21873635 RGD:13792537 NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963
JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit part_of ISO (PMID:14690602), (PMID:17055345) RGD PMID:14690602 PMID:17055345 NCBI chr10:2,416,259...2,448,364 JBrowse link
G Slx4 SLX4 structure-specific endonuclease subunit colocalizes_with
part_of
ISO
IEA
(PMID:19595721), (PMID:19596235), (PMID:19596236)
GO_REF:0000107
RGD
Ensembl
PMID:19595721 PMID:19596235 PMID:19596236 GO_REF:0000107 NCBI chr10:11,526,563...11,549,291
Ensembl chr10:11,528,424...11,549,295
JBrowse link
G Xrcc1 X-ray repair cross complementing 1 part_of ISO (MGI:3758502|PMID:14690602) RGD PMID:14690602 MGI:3758502 NCBI chr 1:80,140,495...80,168,705
Ensembl chr 1:80,141,207...80,168,701
JBrowse link
G Xrcc4 X-ray repair cross complementing 4 part_of ISO (MGI:3758502|PMID:14690602) RGD PMID:14690602 MGI:3758502 NCBI chr 2:20,948,464...21,197,705
Ensembl chr 2:20,951,200...21,197,808
JBrowse link
mismatch repair complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mlh1 mutL homolog 1 part_of IBA
IEA
PMID:21873635
GO_REF:0000002
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617
JBrowse link
G Mlh3 mutL homolog 3 part_of IBA
ISO
PMID:21873635
(MGI:5315075|PMID:22164254)
RGD PMID:22164254 PMID:21873635 MGI:5315075, RGD:13792537 NCBI chr 6:104,881,483...104,917,686
Ensembl chr 6:104,881,483...104,917,728
JBrowse link
G Msh2 mutS homolog 2 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:6,813,793...6,872,960
Ensembl chr 6:6,813,795...6,872,938
JBrowse link
G Msh3 mutS homolog 3 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:23,444,326...23,585,777 JBrowse link
G Msh6 mutS homolog 6 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:6,562,631...6,579,995
Ensembl chr 6:6,562,632...6,579,956
JBrowse link
G Pms1 PMS1 homolog 1, mismatch repair system component part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:48,229,403...48,340,237
Ensembl chr 9:48,253,410...48,340,237
JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:10,676,819...10,701,161
Ensembl chr12:10,676,764...10,701,066
JBrowse link
MutLalpha complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mlh1 mutL homolog 1 part_of IEA
ISO
IBA
GO_REF:0000107
(MGI:3653556|PMID:16713580), (MGI:5315075|PMID:22164254)
PMID:21873635
Ensembl
RGD
PMID:16713580 PMID:22164254 PMID:21873635 GO_REF:0000107 MGI:3653556 MGI:5315075, RGD:13792537 NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617
JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component part_of IBA
ISO
PMID:21873635
(MGI:3653556|PMID:16713580)
RGD PMID:16713580 PMID:21873635 MGI:3653556, RGD:13792537 NCBI chr12:10,676,819...10,701,161
Ensembl chr12:10,676,764...10,701,066
JBrowse link
MutSalpha complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Msh2 mutS homolog 2 part_of IBA
ISO
ISS
IEA
PMID:21873635
(MGI:3653556|PMID:16713580)
GO_REF:0000024
GO_REF:0000104
(PMID:23622243), (PMID:8942985)
RGD
UniProt
PMID:8942985 PMID:16713580 PMID:23622243 PMID:21873635 GO_REF:0000024 GO_REF:0000104 MGI:3653556, RGD:13792537 NCBI chr 6:6,813,793...6,872,960
Ensembl chr 6:6,813,795...6,872,938
JBrowse link
G Msh4 mutS homolog 4 part_of IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 2:242,785,392...242,844,609
Ensembl chr 2:242,792,661...242,843,487
JBrowse link
G Msh6 mutS homolog 6 part_of IBA
ISO
PMID:21873635
(MGI:3653556|PMID:16713580)
(PMID:23622243), (PMID:8942985)
RGD PMID:8942985 PMID:16713580 PMID:23622243 PMID:21873635 MGI:3653556, RGD:13792537 NCBI chr 6:6,562,631...6,579,995
Ensembl chr 6:6,562,632...6,579,956
JBrowse link
MutSbeta complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Msh2 mutS homolog 2 part_of IBA
IEA
ISO
PMID:21873635
GO_REF:0000107
(PMID:8942985)
Ensembl
RGD
PMID:8942985 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 6:6,813,793...6,872,960
Ensembl chr 6:6,813,795...6,872,938
JBrowse link
G Msh3 mutS homolog 3 part_of IBA
ISO
PMID:21873635
(PMID:8942985)
RGD PMID:8942985 PMID:21873635 RGD:13792537 NCBI chr 2:23,444,326...23,585,777 JBrowse link
nonhomologous end joining complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dclre1c DNA cross-link repair 1C part_of ISO
ISS
(PMID:25941166)
GO_REF:0000024
RGD
UniProt
PMID:25941166 GO_REF:0000024 NCBI chr17:74,775,828...74,810,089
Ensembl chr17:74,776,935...74,809,186
JBrowse link
G Lig4 DNA ligase 4 part_of ISO (PMID:20383123), (PMID:25941166) RGD PMID:20383123 PMID:25941166 NCBI chr16:79,518,393...79,526,956
Ensembl chr16:79,518,312...79,527,040
JBrowse link
G Nhej1 nonhomologous end-joining factor 1 part_of IBA
ISS
ISO
PMID:21873635
GO_REF:0000024
(PMID:20383123), (PMID:25941166)
UniProt
RGD
PMID:20383123 PMID:25941166 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 9:76,526,322...76,622,488
Ensembl chr 9:76,526,324...76,622,444
JBrowse link
G Paxx PAXX, non-homologous end joining factor part_of IBA
ISO
PMID:21873635
(PMID:25670504), (PMID:25941166)
RGD PMID:25670504 PMID:25941166 PMID:21873635 RGD:13792537 NCBI chr 3:8,274,762...8,276,338
Ensembl chr 3:8,274,762...8,276,521
JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit part_of ISO (PMID:20383123), (PMID:25941166) RGD PMID:20383123 PMID:25941166 NCBI chr11:85,040,790...85,258,357
Ensembl chr11:85,040,792...85,257,952
JBrowse link
G Xrcc4 X-ray repair cross complementing 4 part_of ISO (PMID:20383123), (PMID:25941166) RGD PMID:20383123 PMID:25941166 NCBI chr 2:20,948,464...21,197,705
Ensembl chr 2:20,951,200...21,197,808
JBrowse link
G Xrcc5 X-ray repair cross complementing 5 part_of ISO (PMID:20383123), (PMID:25941166) RGD PMID:20383123 PMID:25941166 NCBI chr 9:73,955,220...74,044,020
Ensembl chr 9:73,955,216...74,044,018
JBrowse link
G Xrcc6 X-ray repair cross complementing 6 part_of ISO (PMID:20383123), (PMID:25941166) RGD PMID:20383123 PMID:25941166 NCBI chr 7:113,542,992...113,563,762
Ensembl chr 7:113,543,057...113,563,762
JBrowse link
nucleotide-excision repair complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit part_of ISO (PMID:3290851), (PMID:7559382), (PMID:8197175) RGD PMID:3290851 PMID:7559382 PMID:8197175 NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963
JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit part_of ISO (PMID:10644440) RGD PMID:10644440 NCBI chr10:2,416,259...2,448,364 JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease part_of ISO (PMID:11259578) RGD PMID:11259578 NCBI chr 9:46,309,477...46,354,478
Ensembl chr 9:46,309,389...46,354,472
JBrowse link
G Ercc8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit part_of IBA
ISO
PMID:21873635
(PMID:12732143)
RGD PMID:12732143 PMID:21873635 RGD:13792537 NCBI chr 2:39,647,393...39,686,229
Ensembl chr 2:39,647,452...39,684,859
JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit part_of ISO
IEA
(PMID:20713449)
GO_REF:0000107
RGD
Ensembl
PMID:20713449 GO_REF:0000107 NCBI chr 1:95,025,462...95,041,559
Ensembl chr 1:95,025,499...95,036,465
JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor part_of ISO (PMID:11259578) RGD PMID:11259578 NCBI chr 4:123,993,670...124,020,922
Ensembl chr 4:123,993,666...124,021,010
JBrowse link
nucleotide-excision repair factor 1 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC117889.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit part_of IBA
ISO
PMID:21873635
(PMID:10413517)
RGD PMID:10413517 PMID:21873635 RGD:13792537 NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963
JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit part_of ISO
IBA
(PMID:10413517)
PMID:21873635
RGD PMID:10413517 PMID:21873635 RGD:13792537 NCBI chr10:2,416,259...2,448,364 JBrowse link
G Xpa XPA, DNA damage recognition and repair factor part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:60,431,673...60,476,438
Ensembl chr 5:60,431,673...60,475,726
JBrowse link
nucleotide-excision repair factor 2 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Xpc XPC complex subunit, DNA damage recognition and repair factor part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:123,993,670...124,020,922
Ensembl chr 4:123,993,666...124,021,010
JBrowse link
nucleotide-excision repair factor 3 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:23,883,613...23,914,326
Ensembl chr18:23,883,580...23,914,329
JBrowse link
Shu complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Swsap1 SWIM-type zinc finger 7 associated protein 1 part_of IBA
ISO
PMID:21873635
(PMID:21965664)
RGD PMID:21965664 PMID:21873635 RGD:13792537 NCBI chr 8:20,486,680...20,489,213
Ensembl chr 8:20,486,678...20,489,211
JBrowse link
G Zswim7 zinc finger, SWIM-type containing 7 part_of ISO
IBA
(PMID:21965664)
PMID:21873635
RGD PMID:21965664 PMID:21873635 RGD:13792537 NCBI chr10:46,953,311...46,969,800
Ensembl chr10:46,957,525...46,969,671
JBrowse link
XPC complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cetn2 centrin 2 part_of ISO (PMID:11279143) RGD PMID:11279143 NCBI chr  X:150,769,944...150,775,052
Ensembl chr  X:150,769,953...150,774,919
JBrowse link
G Rad23b RAD23 homolog B, nucleotide excision repair protein part_of ISS
ISO
GO_REF:0000024
(PMID:11279143)
UniProt
RGD
PMID:11279143 GO_REF:0000024 NCBI chr 5:70,090,232...70,128,340
Ensembl chr 5:70,090,232...70,128,319
JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor part_of IBA
ISO
PMID:21873635
(PMID:11279143), (PMID:31527837)
RGD PMID:11279143 PMID:31527837 PMID:21873635 RGD:13792537 NCBI chr 4:123,993,670...124,020,922
Ensembl chr 4:123,993,666...124,021,010
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20010
    protein-containing complex 6011
      DNA repair complex 37
        Sad1-Kms1 LINC complex 0
        Shu complex 2
        excinuclease repair complex 0
        mismatch repair complex + 8
        nonhomologous end joining complex + 8
        nucleotide-excision repair complex + 14
paths to the root